Multiple sequence alignment - TraesCS5D01G291400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G291400 chr5D 100.000 3000 0 0 1 3000 389037350 389034351 0.000000e+00 5541.0
1 TraesCS5D01G291400 chr5D 100.000 40 0 0 2961 3000 407357476 407357515 1.150000e-09 75.0
2 TraesCS5D01G291400 chr5A 95.458 1409 36 10 876 2258 491963261 491961855 0.000000e+00 2222.0
3 TraesCS5D01G291400 chr5A 90.604 745 36 15 2260 3000 491961822 491961108 0.000000e+00 957.0
4 TraesCS5D01G291400 chr5A 94.397 232 12 1 1 232 544437945 544438175 3.680000e-94 355.0
5 TraesCS5D01G291400 chr5A 100.000 40 0 0 2961 3000 512711871 512711910 1.150000e-09 75.0
6 TraesCS5D01G291400 chr5B 87.472 1764 139 39 936 2632 467386787 467385039 0.000000e+00 1958.0
7 TraesCS5D01G291400 chr5B 87.216 1322 91 31 776 2085 467499256 467498001 0.000000e+00 1434.0
8 TraesCS5D01G291400 chr5B 80.247 324 40 12 2681 2997 488264460 488264766 3.890000e-54 222.0
9 TraesCS5D01G291400 chr7D 94.372 231 13 0 1 231 50976771 50977001 3.680000e-94 355.0
10 TraesCS5D01G291400 chr7D 93.939 231 14 0 1 231 50869478 50869708 1.710000e-92 350.0
11 TraesCS5D01G291400 chr7D 93.939 231 14 0 1 231 50901285 50901515 1.710000e-92 350.0
12 TraesCS5D01G291400 chr7D 93.939 231 14 0 1 231 50933267 50933497 1.710000e-92 350.0
13 TraesCS5D01G291400 chrUn 93.939 231 14 0 1 231 358036274 358036504 1.710000e-92 350.0
14 TraesCS5D01G291400 chrUn 93.939 231 14 0 1 231 358104246 358104476 1.710000e-92 350.0
15 TraesCS5D01G291400 chrUn 93.939 231 14 0 1 231 403046876 403046646 1.710000e-92 350.0
16 TraesCS5D01G291400 chr4D 93.562 233 13 2 1 231 387456895 387457127 2.210000e-91 346.0
17 TraesCS5D01G291400 chr4D 91.304 69 2 3 642 708 309498415 309498481 1.150000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G291400 chr5D 389034351 389037350 2999 True 5541.0 5541 100.000 1 3000 1 chr5D.!!$R1 2999
1 TraesCS5D01G291400 chr5A 491961108 491963261 2153 True 1589.5 2222 93.031 876 3000 2 chr5A.!!$R1 2124
2 TraesCS5D01G291400 chr5B 467385039 467386787 1748 True 1958.0 1958 87.472 936 2632 1 chr5B.!!$R1 1696
3 TraesCS5D01G291400 chr5B 467498001 467499256 1255 True 1434.0 1434 87.216 776 2085 1 chr5B.!!$R2 1309

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.034896 TTCCAGCTCGTTTGGACTCC 59.965 55.0 5.09 0.0 44.13 3.85 F
58 59 0.106149 AGCTCGTTTGGACTCCGTTT 59.894 50.0 0.00 0.0 0.00 3.60 F
235 236 0.172578 TGGAGACGTATCAAGGTGCG 59.827 55.0 12.92 0.0 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1233 1252 2.099427 GAGGGTGTAGTCGAAGATGTCC 59.901 54.545 0.0 0.0 40.67 4.02 R
1989 2024 3.120649 GCTTCTTGGTGTTCATGTCGTAC 60.121 47.826 0.0 0.0 0.00 3.67 R
2117 2152 1.893544 ACAAGAAGAGAGGTCGTCGA 58.106 50.000 0.0 0.0 36.40 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.722021 AAAATCACCGTAAATTTCCAGCT 57.278 34.783 0.00 0.00 0.00 4.24
43 44 4.965119 AATCACCGTAAATTTCCAGCTC 57.035 40.909 0.00 0.00 0.00 4.09
44 45 2.343101 TCACCGTAAATTTCCAGCTCG 58.657 47.619 0.00 0.00 0.00 5.03
45 46 2.073816 CACCGTAAATTTCCAGCTCGT 58.926 47.619 0.00 0.00 0.00 4.18
46 47 2.482721 CACCGTAAATTTCCAGCTCGTT 59.517 45.455 0.00 0.00 0.00 3.85
47 48 3.058501 CACCGTAAATTTCCAGCTCGTTT 60.059 43.478 0.00 0.00 0.00 3.60
48 49 3.058501 ACCGTAAATTTCCAGCTCGTTTG 60.059 43.478 0.00 0.00 0.00 2.93
49 50 3.488489 CGTAAATTTCCAGCTCGTTTGG 58.512 45.455 0.00 0.00 37.04 3.28
50 51 3.187637 CGTAAATTTCCAGCTCGTTTGGA 59.812 43.478 0.00 2.03 42.81 3.53
51 52 3.643159 AAATTTCCAGCTCGTTTGGAC 57.357 42.857 5.09 0.00 44.13 4.02
52 53 2.568623 ATTTCCAGCTCGTTTGGACT 57.431 45.000 5.09 0.00 44.13 3.85
53 54 1.878953 TTTCCAGCTCGTTTGGACTC 58.121 50.000 5.09 0.00 44.13 3.36
54 55 0.034896 TTCCAGCTCGTTTGGACTCC 59.965 55.000 5.09 0.00 44.13 3.85
55 56 1.738099 CCAGCTCGTTTGGACTCCG 60.738 63.158 0.00 0.00 37.96 4.63
56 57 1.006102 CAGCTCGTTTGGACTCCGT 60.006 57.895 0.00 0.00 0.00 4.69
57 58 0.600255 CAGCTCGTTTGGACTCCGTT 60.600 55.000 0.00 0.00 0.00 4.44
58 59 0.106149 AGCTCGTTTGGACTCCGTTT 59.894 50.000 0.00 0.00 0.00 3.60
59 60 0.234884 GCTCGTTTGGACTCCGTTTG 59.765 55.000 0.00 0.00 0.00 2.93
60 61 1.860676 CTCGTTTGGACTCCGTTTGA 58.139 50.000 0.00 0.00 0.00 2.69
61 62 2.413837 CTCGTTTGGACTCCGTTTGAT 58.586 47.619 0.00 0.00 0.00 2.57
62 63 3.581755 CTCGTTTGGACTCCGTTTGATA 58.418 45.455 0.00 0.00 0.00 2.15
63 64 4.181578 CTCGTTTGGACTCCGTTTGATAT 58.818 43.478 0.00 0.00 0.00 1.63
64 65 4.571919 TCGTTTGGACTCCGTTTGATATT 58.428 39.130 0.00 0.00 0.00 1.28
65 66 4.998672 TCGTTTGGACTCCGTTTGATATTT 59.001 37.500 0.00 0.00 0.00 1.40
66 67 5.121142 TCGTTTGGACTCCGTTTGATATTTC 59.879 40.000 0.00 0.00 0.00 2.17
67 68 5.121768 CGTTTGGACTCCGTTTGATATTTCT 59.878 40.000 0.00 0.00 0.00 2.52
68 69 6.348213 CGTTTGGACTCCGTTTGATATTTCTT 60.348 38.462 0.00 0.00 0.00 2.52
69 70 7.368059 GTTTGGACTCCGTTTGATATTTCTTT 58.632 34.615 0.00 0.00 0.00 2.52
70 71 7.519032 TTGGACTCCGTTTGATATTTCTTTT 57.481 32.000 0.00 0.00 0.00 2.27
71 72 7.141100 TGGACTCCGTTTGATATTTCTTTTC 57.859 36.000 0.00 0.00 0.00 2.29
72 73 6.940298 TGGACTCCGTTTGATATTTCTTTTCT 59.060 34.615 0.00 0.00 0.00 2.52
73 74 7.094805 TGGACTCCGTTTGATATTTCTTTTCTG 60.095 37.037 0.00 0.00 0.00 3.02
74 75 6.612306 ACTCCGTTTGATATTTCTTTTCTGC 58.388 36.000 0.00 0.00 0.00 4.26
75 76 6.206634 ACTCCGTTTGATATTTCTTTTCTGCA 59.793 34.615 0.00 0.00 0.00 4.41
76 77 6.611381 TCCGTTTGATATTTCTTTTCTGCAG 58.389 36.000 7.63 7.63 0.00 4.41
77 78 6.429692 TCCGTTTGATATTTCTTTTCTGCAGA 59.570 34.615 13.74 13.74 0.00 4.26
78 79 7.040755 TCCGTTTGATATTTCTTTTCTGCAGAA 60.041 33.333 25.16 25.16 0.00 3.02
79 80 7.061094 CCGTTTGATATTTCTTTTCTGCAGAAC 59.939 37.037 28.46 13.94 33.13 3.01
80 81 7.805071 CGTTTGATATTTCTTTTCTGCAGAACT 59.195 33.333 28.46 11.37 33.13 3.01
81 82 9.122613 GTTTGATATTTCTTTTCTGCAGAACTC 57.877 33.333 28.46 14.18 33.13 3.01
82 83 7.984422 TGATATTTCTTTTCTGCAGAACTCA 57.016 32.000 28.46 12.00 33.13 3.41
83 84 8.394971 TGATATTTCTTTTCTGCAGAACTCAA 57.605 30.769 28.46 18.59 33.13 3.02
84 85 8.849168 TGATATTTCTTTTCTGCAGAACTCAAA 58.151 29.630 28.46 23.41 33.13 2.69
85 86 9.683069 GATATTTCTTTTCTGCAGAACTCAAAA 57.317 29.630 28.46 22.87 33.13 2.44
86 87 7.998753 ATTTCTTTTCTGCAGAACTCAAAAG 57.001 32.000 28.46 25.31 36.02 2.27
87 88 6.515272 TTCTTTTCTGCAGAACTCAAAAGT 57.485 33.333 28.46 0.00 36.10 2.66
88 89 7.624360 TTCTTTTCTGCAGAACTCAAAAGTA 57.376 32.000 28.46 18.24 36.10 2.24
89 90 7.624360 TCTTTTCTGCAGAACTCAAAAGTAA 57.376 32.000 28.46 15.14 36.10 2.24
90 91 7.697691 TCTTTTCTGCAGAACTCAAAAGTAAG 58.302 34.615 28.46 22.74 36.10 2.34
91 92 6.377327 TTTCTGCAGAACTCAAAAGTAAGG 57.623 37.500 28.46 0.00 33.48 2.69
92 93 5.290493 TCTGCAGAACTCAAAAGTAAGGA 57.710 39.130 15.67 0.00 33.48 3.36
93 94 5.680619 TCTGCAGAACTCAAAAGTAAGGAA 58.319 37.500 15.67 0.00 33.48 3.36
94 95 6.119536 TCTGCAGAACTCAAAAGTAAGGAAA 58.880 36.000 15.67 0.00 33.48 3.13
95 96 6.601613 TCTGCAGAACTCAAAAGTAAGGAAAA 59.398 34.615 15.67 0.00 33.48 2.29
96 97 7.122055 TCTGCAGAACTCAAAAGTAAGGAAAAA 59.878 33.333 15.67 0.00 33.48 1.94
112 113 2.877043 AAAAACAGAAGCTGGCACTG 57.123 45.000 14.32 14.32 35.51 3.66
113 114 1.035139 AAAACAGAAGCTGGCACTGG 58.965 50.000 17.92 0.00 35.51 4.00
114 115 0.825010 AAACAGAAGCTGGCACTGGG 60.825 55.000 17.92 0.00 35.51 4.45
115 116 3.060615 CAGAAGCTGGCACTGGGC 61.061 66.667 0.00 0.00 43.74 5.36
116 117 3.255397 AGAAGCTGGCACTGGGCT 61.255 61.111 0.21 0.00 44.01 5.19
117 118 2.749441 GAAGCTGGCACTGGGCTC 60.749 66.667 0.21 0.00 44.01 4.70
118 119 3.255397 AAGCTGGCACTGGGCTCT 61.255 61.111 0.21 0.00 44.01 4.09
119 120 1.903877 GAAGCTGGCACTGGGCTCTA 61.904 60.000 0.21 0.00 44.01 2.43
120 121 1.908340 AAGCTGGCACTGGGCTCTAG 61.908 60.000 0.21 0.00 44.01 2.43
121 122 2.906458 CTGGCACTGGGCTCTAGG 59.094 66.667 0.21 0.00 44.01 3.02
122 123 1.992277 CTGGCACTGGGCTCTAGGT 60.992 63.158 0.21 0.00 44.01 3.08
123 124 1.538876 TGGCACTGGGCTCTAGGTT 60.539 57.895 0.21 0.00 44.01 3.50
124 125 0.252513 TGGCACTGGGCTCTAGGTTA 60.253 55.000 0.21 0.00 44.01 2.85
125 126 0.909623 GGCACTGGGCTCTAGGTTAA 59.090 55.000 0.21 0.00 44.01 2.01
126 127 1.490910 GGCACTGGGCTCTAGGTTAAT 59.509 52.381 0.21 0.00 44.01 1.40
127 128 2.704065 GGCACTGGGCTCTAGGTTAATA 59.296 50.000 0.21 0.00 44.01 0.98
128 129 3.244249 GGCACTGGGCTCTAGGTTAATAG 60.244 52.174 0.21 0.00 44.01 1.73
129 130 3.244249 GCACTGGGCTCTAGGTTAATAGG 60.244 52.174 0.00 0.00 40.25 2.57
130 131 3.967987 CACTGGGCTCTAGGTTAATAGGT 59.032 47.826 0.00 0.00 0.00 3.08
131 132 4.409247 CACTGGGCTCTAGGTTAATAGGTT 59.591 45.833 0.00 0.00 0.00 3.50
132 133 5.601313 CACTGGGCTCTAGGTTAATAGGTTA 59.399 44.000 0.00 0.00 0.00 2.85
133 134 5.839606 ACTGGGCTCTAGGTTAATAGGTTAG 59.160 44.000 0.00 0.00 0.00 2.34
134 135 5.785123 TGGGCTCTAGGTTAATAGGTTAGT 58.215 41.667 0.00 0.00 0.00 2.24
135 136 5.837438 TGGGCTCTAGGTTAATAGGTTAGTC 59.163 44.000 0.00 0.00 0.00 2.59
136 137 5.245751 GGGCTCTAGGTTAATAGGTTAGTCC 59.754 48.000 0.00 0.00 0.00 3.85
137 138 5.245751 GGCTCTAGGTTAATAGGTTAGTCCC 59.754 48.000 0.00 0.00 36.75 4.46
138 139 5.837438 GCTCTAGGTTAATAGGTTAGTCCCA 59.163 44.000 0.00 0.00 36.75 4.37
139 140 6.325804 GCTCTAGGTTAATAGGTTAGTCCCAA 59.674 42.308 0.00 0.00 36.75 4.12
140 141 7.147602 GCTCTAGGTTAATAGGTTAGTCCCAAA 60.148 40.741 0.00 0.00 36.75 3.28
141 142 8.683776 TCTAGGTTAATAGGTTAGTCCCAAAA 57.316 34.615 0.00 0.00 36.75 2.44
142 143 9.114938 TCTAGGTTAATAGGTTAGTCCCAAAAA 57.885 33.333 0.00 0.00 36.75 1.94
143 144 9.916360 CTAGGTTAATAGGTTAGTCCCAAAAAT 57.084 33.333 0.00 0.00 36.75 1.82
144 145 8.818622 AGGTTAATAGGTTAGTCCCAAAAATC 57.181 34.615 0.00 0.00 36.75 2.17
145 146 8.395605 AGGTTAATAGGTTAGTCCCAAAAATCA 58.604 33.333 0.00 0.00 36.75 2.57
146 147 9.197306 GGTTAATAGGTTAGTCCCAAAAATCAT 57.803 33.333 0.00 0.00 36.75 2.45
154 155 9.476202 GGTTAGTCCCAAAAATCATATAAATGC 57.524 33.333 0.00 0.00 32.76 3.56
232 233 2.649331 CGTTGGAGACGTATCAAGGT 57.351 50.000 12.92 0.00 46.49 3.50
233 234 2.259618 CGTTGGAGACGTATCAAGGTG 58.740 52.381 12.92 0.00 46.49 4.00
234 235 2.000447 GTTGGAGACGTATCAAGGTGC 59.000 52.381 12.92 0.00 0.00 5.01
235 236 0.172578 TGGAGACGTATCAAGGTGCG 59.827 55.000 12.92 0.00 0.00 5.34
236 237 0.527817 GGAGACGTATCAAGGTGCGG 60.528 60.000 12.92 0.00 0.00 5.69
237 238 0.454600 GAGACGTATCAAGGTGCGGA 59.545 55.000 5.07 0.00 0.00 5.54
238 239 0.456221 AGACGTATCAAGGTGCGGAG 59.544 55.000 0.00 0.00 0.00 4.63
239 240 0.527817 GACGTATCAAGGTGCGGAGG 60.528 60.000 0.00 0.00 0.00 4.30
240 241 1.255667 ACGTATCAAGGTGCGGAGGT 61.256 55.000 0.00 0.00 0.00 3.85
241 242 0.806102 CGTATCAAGGTGCGGAGGTG 60.806 60.000 0.00 0.00 0.00 4.00
242 243 1.090052 GTATCAAGGTGCGGAGGTGC 61.090 60.000 0.00 0.00 0.00 5.01
243 244 2.252072 TATCAAGGTGCGGAGGTGCC 62.252 60.000 0.00 0.00 0.00 5.01
258 259 4.821589 GCCGACGAGCCCAAGGAG 62.822 72.222 0.00 0.00 0.00 3.69
259 260 4.821589 CCGACGAGCCCAAGGAGC 62.822 72.222 0.00 0.00 0.00 4.70
260 261 3.764466 CGACGAGCCCAAGGAGCT 61.764 66.667 0.00 0.00 45.23 4.09
261 262 2.125350 GACGAGCCCAAGGAGCTG 60.125 66.667 0.00 3.40 41.75 4.24
262 263 3.672295 GACGAGCCCAAGGAGCTGG 62.672 68.421 0.00 8.02 41.75 4.85
263 264 3.393970 CGAGCCCAAGGAGCTGGA 61.394 66.667 0.00 0.00 41.75 3.86
264 265 2.959484 CGAGCCCAAGGAGCTGGAA 61.959 63.158 0.00 0.00 41.75 3.53
265 266 1.077858 GAGCCCAAGGAGCTGGAAG 60.078 63.158 0.00 0.00 41.75 3.46
266 267 2.044551 GCCCAAGGAGCTGGAAGG 60.045 66.667 0.00 0.00 38.96 3.46
267 268 2.606587 GCCCAAGGAGCTGGAAGGA 61.607 63.158 0.00 0.00 38.96 3.36
268 269 1.606531 CCCAAGGAGCTGGAAGGAG 59.393 63.158 0.00 0.00 38.96 3.69
269 270 1.077858 CCAAGGAGCTGGAAGGAGC 60.078 63.158 0.00 0.00 38.96 4.70
270 271 1.449246 CAAGGAGCTGGAAGGAGCG 60.449 63.158 0.00 0.00 44.24 5.03
271 272 3.322318 AAGGAGCTGGAAGGAGCGC 62.322 63.158 0.00 0.00 44.24 5.92
272 273 4.087892 GGAGCTGGAAGGAGCGCA 62.088 66.667 11.47 0.00 44.24 6.09
273 274 2.511145 GAGCTGGAAGGAGCGCAG 60.511 66.667 11.47 0.00 44.24 5.18
301 302 4.760047 GCGCAGGTCCATGTCCGT 62.760 66.667 0.30 0.00 0.00 4.69
302 303 2.509336 CGCAGGTCCATGTCCGTC 60.509 66.667 0.00 0.00 0.00 4.79
303 304 2.509336 GCAGGTCCATGTCCGTCG 60.509 66.667 0.00 0.00 0.00 5.12
304 305 2.184322 CAGGTCCATGTCCGTCGG 59.816 66.667 4.39 4.39 0.00 4.79
305 306 3.075005 AGGTCCATGTCCGTCGGG 61.075 66.667 12.29 0.00 0.00 5.14
306 307 4.832608 GGTCCATGTCCGTCGGGC 62.833 72.222 9.51 9.51 0.00 6.13
307 308 4.077184 GTCCATGTCCGTCGGGCA 62.077 66.667 22.86 22.86 0.00 5.36
308 309 3.770040 TCCATGTCCGTCGGGCAG 61.770 66.667 24.75 15.32 0.00 4.85
309 310 4.838152 CCATGTCCGTCGGGCAGG 62.838 72.222 24.75 23.86 0.00 4.85
310 311 4.838152 CATGTCCGTCGGGCAGGG 62.838 72.222 24.75 14.86 0.00 4.45
342 343 3.264845 GGTGGGGGTGGTGGTGAT 61.265 66.667 0.00 0.00 0.00 3.06
343 344 2.035626 GTGGGGGTGGTGGTGATG 59.964 66.667 0.00 0.00 0.00 3.07
344 345 2.121735 TGGGGGTGGTGGTGATGA 60.122 61.111 0.00 0.00 0.00 2.92
345 346 2.230653 TGGGGGTGGTGGTGATGAG 61.231 63.158 0.00 0.00 0.00 2.90
346 347 2.677228 GGGGTGGTGGTGATGAGG 59.323 66.667 0.00 0.00 0.00 3.86
347 348 1.923395 GGGGTGGTGGTGATGAGGA 60.923 63.158 0.00 0.00 0.00 3.71
348 349 1.299976 GGGTGGTGGTGATGAGGAC 59.700 63.158 0.00 0.00 0.00 3.85
349 350 1.079127 GGTGGTGGTGATGAGGACG 60.079 63.158 0.00 0.00 0.00 4.79
350 351 1.741770 GTGGTGGTGATGAGGACGC 60.742 63.158 0.00 0.00 0.00 5.19
351 352 2.509336 GGTGGTGATGAGGACGCG 60.509 66.667 3.53 3.53 0.00 6.01
352 353 3.188786 GTGGTGATGAGGACGCGC 61.189 66.667 5.73 0.00 0.00 6.86
353 354 3.381983 TGGTGATGAGGACGCGCT 61.382 61.111 5.73 0.00 0.00 5.92
354 355 2.049767 TGGTGATGAGGACGCGCTA 61.050 57.895 5.73 0.00 0.00 4.26
355 356 1.299468 GGTGATGAGGACGCGCTAG 60.299 63.158 5.73 0.00 0.00 3.42
356 357 1.946650 GTGATGAGGACGCGCTAGC 60.947 63.158 5.73 4.06 40.74 3.42
357 358 2.355244 GATGAGGACGCGCTAGCC 60.355 66.667 5.73 2.35 41.18 3.93
358 359 4.271816 ATGAGGACGCGCTAGCCG 62.272 66.667 19.72 19.72 41.18 5.52
360 361 4.189188 GAGGACGCGCTAGCCGAA 62.189 66.667 25.67 0.00 41.18 4.30
361 362 3.486252 GAGGACGCGCTAGCCGAAT 62.486 63.158 25.67 13.95 41.18 3.34
362 363 3.030882 GGACGCGCTAGCCGAATC 61.031 66.667 25.67 16.06 41.18 2.52
363 364 3.030882 GACGCGCTAGCCGAATCC 61.031 66.667 25.67 11.84 41.18 3.01
364 365 4.587189 ACGCGCTAGCCGAATCCC 62.587 66.667 25.67 2.90 41.18 3.85
366 367 4.280494 GCGCTAGCCGAATCCCGA 62.280 66.667 9.66 0.00 41.76 5.14
367 368 2.354773 CGCTAGCCGAATCCCGAC 60.355 66.667 9.66 0.00 41.76 4.79
368 369 2.029221 GCTAGCCGAATCCCGACC 59.971 66.667 2.29 0.00 41.76 4.79
369 370 2.335369 CTAGCCGAATCCCGACCG 59.665 66.667 0.00 0.00 41.76 4.79
370 371 3.843117 CTAGCCGAATCCCGACCGC 62.843 68.421 0.00 0.00 41.76 5.68
374 375 4.514577 CGAATCCCGACCGCTGCT 62.515 66.667 0.00 0.00 41.76 4.24
375 376 2.586357 GAATCCCGACCGCTGCTC 60.586 66.667 0.00 0.00 0.00 4.26
376 377 4.162690 AATCCCGACCGCTGCTCC 62.163 66.667 0.00 0.00 0.00 4.70
413 414 2.754658 GGGACCCGAAGCTCGAGA 60.755 66.667 18.75 0.00 43.74 4.04
414 415 2.776913 GGGACCCGAAGCTCGAGAG 61.777 68.421 18.75 3.59 43.74 3.20
415 416 1.749638 GGACCCGAAGCTCGAGAGA 60.750 63.158 18.75 0.00 43.74 3.10
425 426 3.187313 TCGAGAGAGGGTTGGGGA 58.813 61.111 0.00 0.00 34.84 4.81
426 427 1.000486 TCGAGAGAGGGTTGGGGAG 60.000 63.158 0.00 0.00 34.84 4.30
427 428 1.000486 CGAGAGAGGGTTGGGGAGA 60.000 63.158 0.00 0.00 0.00 3.71
428 429 1.040339 CGAGAGAGGGTTGGGGAGAG 61.040 65.000 0.00 0.00 0.00 3.20
429 430 0.689412 GAGAGAGGGTTGGGGAGAGG 60.689 65.000 0.00 0.00 0.00 3.69
430 431 1.156322 AGAGAGGGTTGGGGAGAGGA 61.156 60.000 0.00 0.00 0.00 3.71
431 432 0.689412 GAGAGGGTTGGGGAGAGGAG 60.689 65.000 0.00 0.00 0.00 3.69
432 433 2.285743 AGGGTTGGGGAGAGGAGC 60.286 66.667 0.00 0.00 0.00 4.70
433 434 3.412408 GGGTTGGGGAGAGGAGCC 61.412 72.222 0.00 0.00 0.00 4.70
434 435 3.787001 GGTTGGGGAGAGGAGCCG 61.787 72.222 0.00 0.00 0.00 5.52
435 436 4.475135 GTTGGGGAGAGGAGCCGC 62.475 72.222 0.00 0.00 38.71 6.53
437 438 4.804420 TGGGGAGAGGAGCCGCAT 62.804 66.667 0.00 0.00 42.57 4.73
438 439 3.934962 GGGGAGAGGAGCCGCATC 61.935 72.222 0.00 0.00 38.18 3.91
439 440 3.157252 GGGAGAGGAGCCGCATCA 61.157 66.667 0.00 0.00 0.00 3.07
440 441 2.420890 GGAGAGGAGCCGCATCAG 59.579 66.667 0.00 0.00 0.00 2.90
441 442 2.420890 GAGAGGAGCCGCATCAGG 59.579 66.667 0.00 0.00 0.00 3.86
442 443 2.042537 AGAGGAGCCGCATCAGGA 60.043 61.111 0.00 0.00 0.00 3.86
443 444 2.107953 GAGGAGCCGCATCAGGAC 59.892 66.667 0.00 0.00 0.00 3.85
444 445 2.685017 AGGAGCCGCATCAGGACA 60.685 61.111 0.00 0.00 0.00 4.02
445 446 2.202987 GGAGCCGCATCAGGACAG 60.203 66.667 0.00 0.00 0.00 3.51
446 447 2.894387 GAGCCGCATCAGGACAGC 60.894 66.667 0.00 0.00 0.00 4.40
450 451 3.857854 CGCATCAGGACAGCGTGC 61.858 66.667 9.08 0.00 45.82 5.34
451 452 3.503363 GCATCAGGACAGCGTGCC 61.503 66.667 0.00 0.00 0.00 5.01
452 453 2.821366 CATCAGGACAGCGTGCCC 60.821 66.667 0.00 0.00 0.00 5.36
453 454 3.321648 ATCAGGACAGCGTGCCCA 61.322 61.111 0.00 0.00 0.00 5.36
454 455 3.320879 ATCAGGACAGCGTGCCCAG 62.321 63.158 0.00 0.00 0.00 4.45
485 486 4.711949 CGCAGCAAGCCAGGGAGT 62.712 66.667 0.00 0.00 41.38 3.85
486 487 2.282745 GCAGCAAGCCAGGGAGTT 60.283 61.111 0.00 0.00 37.23 3.01
487 488 2.633509 GCAGCAAGCCAGGGAGTTG 61.634 63.158 0.00 0.00 37.23 3.16
488 489 2.282745 AGCAAGCCAGGGAGTTGC 60.283 61.111 14.63 14.63 45.68 4.17
489 490 2.598394 GCAAGCCAGGGAGTTGCA 60.598 61.111 16.56 0.00 44.87 4.08
490 491 2.633509 GCAAGCCAGGGAGTTGCAG 61.634 63.158 16.56 0.00 44.87 4.41
491 492 2.282745 AAGCCAGGGAGTTGCAGC 60.283 61.111 0.00 0.00 0.00 5.25
492 493 3.875510 AAGCCAGGGAGTTGCAGCC 62.876 63.158 0.00 0.00 0.00 4.85
510 511 3.658422 GGCCGGGGGAAGGAGTTT 61.658 66.667 2.18 0.00 0.00 2.66
511 512 2.439245 GCCGGGGGAAGGAGTTTT 59.561 61.111 2.18 0.00 0.00 2.43
512 513 1.687014 GCCGGGGGAAGGAGTTTTA 59.313 57.895 2.18 0.00 0.00 1.52
513 514 0.393944 GCCGGGGGAAGGAGTTTTAG 60.394 60.000 2.18 0.00 0.00 1.85
514 515 1.282382 CCGGGGGAAGGAGTTTTAGA 58.718 55.000 0.00 0.00 0.00 2.10
515 516 1.844497 CCGGGGGAAGGAGTTTTAGAT 59.156 52.381 0.00 0.00 0.00 1.98
516 517 2.158798 CCGGGGGAAGGAGTTTTAGATC 60.159 54.545 0.00 0.00 0.00 2.75
517 518 2.158798 CGGGGGAAGGAGTTTTAGATCC 60.159 54.545 0.00 0.00 35.71 3.36
519 520 3.117851 GGGGGAAGGAGTTTTAGATCCTG 60.118 52.174 0.00 0.00 45.39 3.86
520 521 3.780850 GGGGAAGGAGTTTTAGATCCTGA 59.219 47.826 0.00 0.00 45.39 3.86
521 522 4.141597 GGGGAAGGAGTTTTAGATCCTGAG 60.142 50.000 0.00 0.00 45.39 3.35
522 523 4.471747 GGGAAGGAGTTTTAGATCCTGAGT 59.528 45.833 0.00 0.00 45.39 3.41
523 524 5.661759 GGGAAGGAGTTTTAGATCCTGAGTA 59.338 44.000 0.00 0.00 45.39 2.59
524 525 6.183360 GGGAAGGAGTTTTAGATCCTGAGTAG 60.183 46.154 0.00 0.00 45.39 2.57
525 526 6.183360 GGAAGGAGTTTTAGATCCTGAGTAGG 60.183 46.154 0.00 0.00 45.39 3.18
534 535 3.849064 CTGAGTAGGAGAGGGGCG 58.151 66.667 0.00 0.00 0.00 6.13
535 536 2.442272 TGAGTAGGAGAGGGGCGC 60.442 66.667 0.00 0.00 0.00 6.53
536 537 3.597728 GAGTAGGAGAGGGGCGCG 61.598 72.222 0.00 0.00 0.00 6.86
561 562 4.521062 CGAGGGCGCAAGGAGGAG 62.521 72.222 10.83 0.00 38.28 3.69
562 563 4.168291 GAGGGCGCAAGGAGGAGG 62.168 72.222 10.83 0.00 38.28 4.30
569 570 3.474570 CAAGGAGGAGGCCCGGAG 61.475 72.222 0.73 0.00 37.58 4.63
599 600 3.781307 CACCCGCCGGATCAGGAA 61.781 66.667 16.86 0.00 0.00 3.36
600 601 3.782443 ACCCGCCGGATCAGGAAC 61.782 66.667 16.86 0.00 0.00 3.62
601 602 3.781307 CCCGCCGGATCAGGAACA 61.781 66.667 16.86 0.00 0.00 3.18
602 603 2.511600 CCGCCGGATCAGGAACAC 60.512 66.667 16.86 0.00 0.00 3.32
603 604 2.511600 CGCCGGATCAGGAACACC 60.512 66.667 16.86 0.00 0.00 4.16
604 605 2.990479 GCCGGATCAGGAACACCT 59.010 61.111 16.86 0.00 33.85 4.00
611 612 2.046892 CAGGAACACCTGCGGAGG 60.047 66.667 22.94 22.94 43.51 4.30
612 613 2.203788 AGGAACACCTGCGGAGGA 60.204 61.111 31.46 0.00 42.93 3.71
620 621 2.840102 CTGCGGAGGAGGGTAGGG 60.840 72.222 0.00 0.00 44.33 3.53
621 622 4.475444 TGCGGAGGAGGGTAGGGG 62.475 72.222 0.00 0.00 0.00 4.79
622 623 4.153330 GCGGAGGAGGGTAGGGGA 62.153 72.222 0.00 0.00 0.00 4.81
623 624 2.198980 CGGAGGAGGGTAGGGGAG 59.801 72.222 0.00 0.00 0.00 4.30
624 625 2.615773 GGAGGAGGGTAGGGGAGG 59.384 72.222 0.00 0.00 0.00 4.30
625 626 2.615773 GAGGAGGGTAGGGGAGGG 59.384 72.222 0.00 0.00 0.00 4.30
626 627 3.043404 AGGAGGGTAGGGGAGGGG 61.043 72.222 0.00 0.00 0.00 4.79
627 628 4.188511 GGAGGGTAGGGGAGGGGG 62.189 77.778 0.00 0.00 0.00 5.40
628 629 3.040814 GAGGGTAGGGGAGGGGGA 61.041 72.222 0.00 0.00 0.00 4.81
629 630 3.374742 AGGGTAGGGGAGGGGGAC 61.375 72.222 0.00 0.00 0.00 4.46
630 631 4.874533 GGGTAGGGGAGGGGGACG 62.875 77.778 0.00 0.00 0.00 4.79
655 656 4.888325 ATGGGAGGGCTCGGGGAG 62.888 72.222 0.00 0.00 0.00 4.30
670 671 3.721706 GAGGGGGTCTGCTGGGTG 61.722 72.222 0.00 0.00 0.00 4.61
678 679 4.845580 CTGCTGGGTGGCGGCTAG 62.846 72.222 11.43 4.69 34.52 3.42
683 684 4.484872 GGGTGGCGGCTAGGGTTC 62.485 72.222 11.43 0.00 0.00 3.62
684 685 4.484872 GGTGGCGGCTAGGGTTCC 62.485 72.222 11.43 0.00 0.00 3.62
685 686 4.484872 GTGGCGGCTAGGGTTCCC 62.485 72.222 11.43 0.00 0.00 3.97
712 713 3.793060 CCGTGGAAGAGGGACACT 58.207 61.111 0.00 0.00 33.13 3.55
713 714 2.971676 CCGTGGAAGAGGGACACTA 58.028 57.895 0.00 0.00 33.13 2.74
714 715 0.531200 CCGTGGAAGAGGGACACTAC 59.469 60.000 0.00 0.00 33.13 2.73
715 716 1.254026 CGTGGAAGAGGGACACTACA 58.746 55.000 0.00 0.00 33.13 2.74
716 717 1.825474 CGTGGAAGAGGGACACTACAT 59.175 52.381 0.00 0.00 33.13 2.29
717 718 2.233922 CGTGGAAGAGGGACACTACATT 59.766 50.000 0.00 0.00 33.13 2.71
718 719 3.446161 CGTGGAAGAGGGACACTACATTA 59.554 47.826 0.00 0.00 33.13 1.90
719 720 4.081862 CGTGGAAGAGGGACACTACATTAA 60.082 45.833 0.00 0.00 33.13 1.40
720 721 5.420409 GTGGAAGAGGGACACTACATTAAG 58.580 45.833 0.00 0.00 32.58 1.85
721 722 5.046520 GTGGAAGAGGGACACTACATTAAGT 60.047 44.000 0.00 0.00 32.58 2.24
722 723 5.546499 TGGAAGAGGGACACTACATTAAGTT 59.454 40.000 0.00 0.00 0.00 2.66
723 724 6.043938 TGGAAGAGGGACACTACATTAAGTTT 59.956 38.462 0.00 0.00 0.00 2.66
724 725 6.371825 GGAAGAGGGACACTACATTAAGTTTG 59.628 42.308 0.00 0.00 0.00 2.93
725 726 6.681729 AGAGGGACACTACATTAAGTTTGA 57.318 37.500 0.00 0.00 0.00 2.69
726 727 6.465084 AGAGGGACACTACATTAAGTTTGAC 58.535 40.000 0.00 0.00 0.00 3.18
727 728 5.557866 AGGGACACTACATTAAGTTTGACC 58.442 41.667 0.00 0.00 0.00 4.02
728 729 5.072600 AGGGACACTACATTAAGTTTGACCA 59.927 40.000 0.00 0.00 32.37 4.02
729 730 5.411669 GGGACACTACATTAAGTTTGACCAG 59.588 44.000 0.00 0.00 32.37 4.00
730 731 6.228258 GGACACTACATTAAGTTTGACCAGA 58.772 40.000 0.00 0.00 31.63 3.86
731 732 6.879458 GGACACTACATTAAGTTTGACCAGAT 59.121 38.462 0.00 0.00 31.63 2.90
732 733 7.390718 GGACACTACATTAAGTTTGACCAGATT 59.609 37.037 0.00 0.00 31.63 2.40
733 734 8.691661 ACACTACATTAAGTTTGACCAGATTT 57.308 30.769 0.00 0.00 0.00 2.17
734 735 9.787435 ACACTACATTAAGTTTGACCAGATTTA 57.213 29.630 0.00 0.00 0.00 1.40
743 744 7.145932 AGTTTGACCAGATTTAGTATGTTGC 57.854 36.000 0.00 0.00 0.00 4.17
744 745 6.714810 AGTTTGACCAGATTTAGTATGTTGCA 59.285 34.615 0.00 0.00 0.00 4.08
745 746 7.230510 AGTTTGACCAGATTTAGTATGTTGCAA 59.769 33.333 0.00 0.00 0.00 4.08
746 747 7.517614 TTGACCAGATTTAGTATGTTGCAAA 57.482 32.000 0.00 0.00 0.00 3.68
747 748 7.517614 TGACCAGATTTAGTATGTTGCAAAA 57.482 32.000 0.00 0.00 0.00 2.44
748 749 7.946207 TGACCAGATTTAGTATGTTGCAAAAA 58.054 30.769 0.00 0.00 0.00 1.94
749 750 8.584157 TGACCAGATTTAGTATGTTGCAAAAAT 58.416 29.630 0.00 2.10 0.00 1.82
750 751 9.423061 GACCAGATTTAGTATGTTGCAAAAATT 57.577 29.630 0.00 0.00 0.00 1.82
763 764 9.926158 ATGTTGCAAAAATTAACATCTACATGA 57.074 25.926 0.00 0.00 40.01 3.07
764 765 9.926158 TGTTGCAAAAATTAACATCTACATGAT 57.074 25.926 0.00 0.00 33.72 2.45
856 858 8.964420 TTTTTCTATAAAATTGGTCGCTTCAG 57.036 30.769 0.00 0.00 34.62 3.02
857 859 7.915293 TTTCTATAAAATTGGTCGCTTCAGA 57.085 32.000 0.00 0.00 0.00 3.27
858 860 6.903883 TCTATAAAATTGGTCGCTTCAGAC 57.096 37.500 0.00 0.00 40.25 3.51
859 861 6.403049 TCTATAAAATTGGTCGCTTCAGACA 58.597 36.000 0.00 0.00 42.62 3.41
860 862 5.957842 ATAAAATTGGTCGCTTCAGACAA 57.042 34.783 0.00 0.00 42.62 3.18
861 863 4.647424 AAAATTGGTCGCTTCAGACAAA 57.353 36.364 0.00 0.00 42.62 2.83
862 864 4.853924 AAATTGGTCGCTTCAGACAAAT 57.146 36.364 0.00 0.00 44.30 2.32
863 865 4.853924 AATTGGTCGCTTCAGACAAATT 57.146 36.364 6.64 6.64 45.16 1.82
864 866 3.624326 TTGGTCGCTTCAGACAAATTG 57.376 42.857 0.00 0.00 42.62 2.32
865 867 2.571212 TGGTCGCTTCAGACAAATTGT 58.429 42.857 0.00 0.00 42.62 2.71
866 868 3.734463 TGGTCGCTTCAGACAAATTGTA 58.266 40.909 0.00 0.00 42.62 2.41
867 869 3.496884 TGGTCGCTTCAGACAAATTGTAC 59.503 43.478 0.00 0.00 42.62 2.90
868 870 3.746492 GGTCGCTTCAGACAAATTGTACT 59.254 43.478 0.00 0.00 42.62 2.73
869 871 4.143094 GGTCGCTTCAGACAAATTGTACTC 60.143 45.833 0.00 0.00 42.62 2.59
870 872 3.994392 TCGCTTCAGACAAATTGTACTCC 59.006 43.478 0.00 0.00 0.00 3.85
871 873 3.745975 CGCTTCAGACAAATTGTACTCCA 59.254 43.478 0.00 0.00 0.00 3.86
872 874 4.377431 CGCTTCAGACAAATTGTACTCCAC 60.377 45.833 0.00 0.00 0.00 4.02
873 875 4.083271 GCTTCAGACAAATTGTACTCCACC 60.083 45.833 0.00 0.00 0.00 4.61
874 876 4.974645 TCAGACAAATTGTACTCCACCT 57.025 40.909 0.00 0.00 0.00 4.00
884 886 5.654603 TTGTACTCCACCTATACACACAG 57.345 43.478 0.00 0.00 0.00 3.66
887 889 1.831106 CTCCACCTATACACACAGCCA 59.169 52.381 0.00 0.00 0.00 4.75
1233 1252 2.044252 TCCCTCGACTTCCTCCCG 60.044 66.667 0.00 0.00 0.00 5.14
1333 1352 4.671590 TCCTCGTCTGCGACCCCA 62.672 66.667 0.00 0.00 42.81 4.96
1711 1739 2.746375 GCCGGAGATGATGTGGGGT 61.746 63.158 5.05 0.00 0.00 4.95
1742 1770 0.391130 GCTCCACAAGTACCGCATCA 60.391 55.000 0.00 0.00 0.00 3.07
1989 2024 2.391389 GGGCTTCGGCAACTTCTCG 61.391 63.158 0.00 0.00 43.96 4.04
2117 2152 2.632377 CTCTGCGTGACCATGGTAATT 58.368 47.619 19.80 0.00 0.00 1.40
2122 2157 1.586578 CGTGACCATGGTAATTCGACG 59.413 52.381 19.80 14.72 0.00 5.12
2207 2254 0.110056 CGATGCTGTCTTGTGCAACC 60.110 55.000 0.00 0.00 42.74 3.77
2368 2446 3.624410 TGTGATTGTGCATGACTATCTGC 59.376 43.478 0.00 3.38 37.61 4.26
2522 2636 3.753294 TGACACCTCTTTTCCTGTCTC 57.247 47.619 0.00 0.00 35.14 3.36
2533 2647 1.144936 CCTGTCTCGGAGCAATCCC 59.855 63.158 0.00 0.00 0.00 3.85
2535 2649 2.317149 CTGTCTCGGAGCAATCCCCC 62.317 65.000 0.00 0.00 0.00 5.40
2683 2817 5.511234 CTAATCAAGCTCTTTCCCCAATG 57.489 43.478 0.00 0.00 0.00 2.82
2684 2818 3.744940 ATCAAGCTCTTTCCCCAATGA 57.255 42.857 0.00 0.00 0.00 2.57
2685 2819 3.524095 TCAAGCTCTTTCCCCAATGAA 57.476 42.857 0.00 0.00 0.00 2.57
2686 2820 3.424703 TCAAGCTCTTTCCCCAATGAAG 58.575 45.455 0.00 0.00 0.00 3.02
2687 2821 3.160269 CAAGCTCTTTCCCCAATGAAGT 58.840 45.455 0.00 0.00 0.00 3.01
2688 2822 3.532641 AGCTCTTTCCCCAATGAAGTT 57.467 42.857 0.00 0.00 0.00 2.66
2689 2823 3.849527 AGCTCTTTCCCCAATGAAGTTT 58.150 40.909 0.00 0.00 0.00 2.66
2690 2824 4.226384 AGCTCTTTCCCCAATGAAGTTTT 58.774 39.130 0.00 0.00 0.00 2.43
2691 2825 4.281941 AGCTCTTTCCCCAATGAAGTTTTC 59.718 41.667 0.00 0.00 0.00 2.29
2692 2826 4.281941 GCTCTTTCCCCAATGAAGTTTTCT 59.718 41.667 0.00 0.00 0.00 2.52
2693 2827 5.565637 GCTCTTTCCCCAATGAAGTTTTCTC 60.566 44.000 0.00 0.00 0.00 2.87
2694 2828 5.454062 TCTTTCCCCAATGAAGTTTTCTCA 58.546 37.500 0.00 0.00 0.00 3.27
2695 2829 5.896678 TCTTTCCCCAATGAAGTTTTCTCAA 59.103 36.000 0.00 0.00 0.00 3.02
2696 2830 5.789643 TTCCCCAATGAAGTTTTCTCAAG 57.210 39.130 0.00 0.00 0.00 3.02
2697 2831 5.060427 TCCCCAATGAAGTTTTCTCAAGA 57.940 39.130 0.00 0.00 0.00 3.02
2698 2832 5.644188 TCCCCAATGAAGTTTTCTCAAGAT 58.356 37.500 0.00 0.00 0.00 2.40
2699 2833 5.477984 TCCCCAATGAAGTTTTCTCAAGATG 59.522 40.000 0.00 0.00 0.00 2.90
2700 2834 5.477984 CCCCAATGAAGTTTTCTCAAGATGA 59.522 40.000 0.00 0.00 0.00 2.92
2701 2835 6.015180 CCCCAATGAAGTTTTCTCAAGATGAA 60.015 38.462 0.00 0.00 0.00 2.57
2702 2836 7.436118 CCCAATGAAGTTTTCTCAAGATGAAA 58.564 34.615 0.00 0.00 0.00 2.69
2703 2837 7.383300 CCCAATGAAGTTTTCTCAAGATGAAAC 59.617 37.037 0.00 0.92 33.77 2.78
2704 2838 7.922278 CCAATGAAGTTTTCTCAAGATGAAACA 59.078 33.333 9.02 0.00 33.77 2.83
2705 2839 8.749499 CAATGAAGTTTTCTCAAGATGAAACAC 58.251 33.333 9.02 4.85 33.77 3.32
2706 2840 7.630242 TGAAGTTTTCTCAAGATGAAACACT 57.370 32.000 9.02 0.00 33.77 3.55
2742 2876 7.615365 TGTAAATTTGGCTATGAATGAACCTCT 59.385 33.333 0.00 0.00 0.00 3.69
2743 2877 9.120538 GTAAATTTGGCTATGAATGAACCTCTA 57.879 33.333 0.00 0.00 0.00 2.43
2756 2890 7.613022 TGAATGAACCTCTATTTTCTTGCATCT 59.387 33.333 0.00 0.00 0.00 2.90
2786 2921 4.830046 TGGCAGCTCAAAACCACTTAAATA 59.170 37.500 0.00 0.00 0.00 1.40
2817 2952 5.779806 ATCGTCGAAAGTTTTCATAGTGG 57.220 39.130 0.00 0.00 37.01 4.00
2818 2953 3.430895 TCGTCGAAAGTTTTCATAGTGGC 59.569 43.478 0.00 0.00 37.01 5.01
2857 2992 5.163854 GGATTTACGTCTCATCAACTTGTGG 60.164 44.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.096673 AGCTGGAAATTTACGGTGATTTTT 57.903 33.333 10.97 0.00 0.00 1.94
20 21 5.619086 CGAGCTGGAAATTTACGGTGATTTT 60.619 40.000 10.97 0.00 0.00 1.82
21 22 4.142687 CGAGCTGGAAATTTACGGTGATTT 60.143 41.667 10.97 4.61 0.00 2.17
22 23 3.374058 CGAGCTGGAAATTTACGGTGATT 59.626 43.478 10.97 0.00 0.00 2.57
23 24 2.936498 CGAGCTGGAAATTTACGGTGAT 59.064 45.455 10.97 0.00 0.00 3.06
24 25 2.289195 ACGAGCTGGAAATTTACGGTGA 60.289 45.455 10.97 0.00 0.00 4.02
25 26 2.073816 ACGAGCTGGAAATTTACGGTG 58.926 47.619 10.97 4.27 0.00 4.94
26 27 2.467566 ACGAGCTGGAAATTTACGGT 57.532 45.000 10.97 4.10 0.00 4.83
27 28 3.488489 CAAACGAGCTGGAAATTTACGG 58.512 45.455 4.71 4.71 0.00 4.02
28 29 3.187637 TCCAAACGAGCTGGAAATTTACG 59.812 43.478 1.44 0.00 40.08 3.18
29 30 4.215613 AGTCCAAACGAGCTGGAAATTTAC 59.784 41.667 1.44 0.00 44.55 2.01
30 31 4.394729 AGTCCAAACGAGCTGGAAATTTA 58.605 39.130 1.44 0.00 44.55 1.40
31 32 3.222603 AGTCCAAACGAGCTGGAAATTT 58.777 40.909 1.44 0.00 44.55 1.82
32 33 2.814336 GAGTCCAAACGAGCTGGAAATT 59.186 45.455 1.44 0.00 44.55 1.82
33 34 2.427506 GAGTCCAAACGAGCTGGAAAT 58.572 47.619 1.44 0.00 44.55 2.17
34 35 1.542547 GGAGTCCAAACGAGCTGGAAA 60.543 52.381 3.60 0.00 44.55 3.13
35 36 0.034896 GGAGTCCAAACGAGCTGGAA 59.965 55.000 3.60 0.00 44.55 3.53
36 37 1.671742 GGAGTCCAAACGAGCTGGA 59.328 57.895 3.60 0.00 40.77 3.86
37 38 1.738099 CGGAGTCCAAACGAGCTGG 60.738 63.158 10.49 0.00 35.05 4.85
38 39 0.600255 AACGGAGTCCAAACGAGCTG 60.600 55.000 10.49 0.00 45.00 4.24
39 40 0.106149 AAACGGAGTCCAAACGAGCT 59.894 50.000 10.49 0.00 45.00 4.09
40 41 0.234884 CAAACGGAGTCCAAACGAGC 59.765 55.000 10.49 0.00 45.00 5.03
41 42 1.860676 TCAAACGGAGTCCAAACGAG 58.139 50.000 10.49 0.00 45.00 4.18
42 43 2.536761 ATCAAACGGAGTCCAAACGA 57.463 45.000 10.49 0.18 45.00 3.85
43 44 4.939509 AATATCAAACGGAGTCCAAACG 57.060 40.909 10.49 0.00 45.00 3.60
44 45 6.496338 AGAAATATCAAACGGAGTCCAAAC 57.504 37.500 10.49 0.00 45.00 2.93
45 46 7.519032 AAAGAAATATCAAACGGAGTCCAAA 57.481 32.000 10.49 0.00 45.00 3.28
46 47 7.447238 AGAAAAGAAATATCAAACGGAGTCCAA 59.553 33.333 10.49 0.00 45.00 3.53
47 48 6.940298 AGAAAAGAAATATCAAACGGAGTCCA 59.060 34.615 10.49 0.00 45.00 4.02
48 49 7.244192 CAGAAAAGAAATATCAAACGGAGTCC 58.756 38.462 0.00 0.00 45.00 3.85
49 50 6.743172 GCAGAAAAGAAATATCAAACGGAGTC 59.257 38.462 0.00 0.00 45.00 3.36
51 52 6.611381 TGCAGAAAAGAAATATCAAACGGAG 58.389 36.000 0.00 0.00 0.00 4.63
52 53 6.429692 TCTGCAGAAAAGAAATATCAAACGGA 59.570 34.615 15.67 0.00 0.00 4.69
53 54 6.611381 TCTGCAGAAAAGAAATATCAAACGG 58.389 36.000 15.67 0.00 0.00 4.44
54 55 7.805071 AGTTCTGCAGAAAAGAAATATCAAACG 59.195 33.333 29.99 0.00 35.50 3.60
55 56 9.122613 GAGTTCTGCAGAAAAGAAATATCAAAC 57.877 33.333 29.99 13.39 35.50 2.93
56 57 8.849168 TGAGTTCTGCAGAAAAGAAATATCAAA 58.151 29.630 29.99 0.32 35.50 2.69
57 58 8.394971 TGAGTTCTGCAGAAAAGAAATATCAA 57.605 30.769 29.99 0.81 35.50 2.57
58 59 7.984422 TGAGTTCTGCAGAAAAGAAATATCA 57.016 32.000 29.99 18.56 35.50 2.15
59 60 9.683069 TTTTGAGTTCTGCAGAAAAGAAATATC 57.317 29.630 29.99 14.38 35.50 1.63
60 61 9.688592 CTTTTGAGTTCTGCAGAAAAGAAATAT 57.311 29.630 29.99 9.15 36.25 1.28
61 62 8.686334 ACTTTTGAGTTCTGCAGAAAAGAAATA 58.314 29.630 30.70 18.10 37.17 1.40
62 63 7.550712 ACTTTTGAGTTCTGCAGAAAAGAAAT 58.449 30.769 30.70 13.47 37.17 2.17
63 64 6.924111 ACTTTTGAGTTCTGCAGAAAAGAAA 58.076 32.000 30.70 24.22 37.17 2.52
64 65 6.515272 ACTTTTGAGTTCTGCAGAAAAGAA 57.485 33.333 30.70 21.07 37.17 2.52
65 66 7.201732 CCTTACTTTTGAGTTCTGCAGAAAAGA 60.202 37.037 30.70 18.34 37.17 2.52
66 67 6.914757 CCTTACTTTTGAGTTCTGCAGAAAAG 59.085 38.462 29.99 27.42 38.83 2.27
67 68 6.601613 TCCTTACTTTTGAGTTCTGCAGAAAA 59.398 34.615 29.99 18.22 35.58 2.29
68 69 6.119536 TCCTTACTTTTGAGTTCTGCAGAAA 58.880 36.000 29.99 12.98 35.58 2.52
69 70 5.680619 TCCTTACTTTTGAGTTCTGCAGAA 58.319 37.500 25.16 25.16 0.00 3.02
70 71 5.290493 TCCTTACTTTTGAGTTCTGCAGA 57.710 39.130 13.74 13.74 0.00 4.26
71 72 6.377327 TTTCCTTACTTTTGAGTTCTGCAG 57.623 37.500 7.63 7.63 0.00 4.41
72 73 6.767524 TTTTCCTTACTTTTGAGTTCTGCA 57.232 33.333 0.00 0.00 0.00 4.41
93 94 1.410153 CCAGTGCCAGCTTCTGTTTTT 59.590 47.619 11.92 0.00 0.00 1.94
94 95 1.035139 CCAGTGCCAGCTTCTGTTTT 58.965 50.000 11.92 0.00 0.00 2.43
95 96 0.825010 CCCAGTGCCAGCTTCTGTTT 60.825 55.000 11.92 0.00 0.00 2.83
96 97 1.228367 CCCAGTGCCAGCTTCTGTT 60.228 57.895 11.92 0.00 0.00 3.16
97 98 2.433446 CCCAGTGCCAGCTTCTGT 59.567 61.111 11.92 0.00 0.00 3.41
98 99 3.060615 GCCCAGTGCCAGCTTCTG 61.061 66.667 7.91 7.91 0.00 3.02
99 100 3.255397 AGCCCAGTGCCAGCTTCT 61.255 61.111 0.00 0.00 42.71 2.85
100 101 1.903877 TAGAGCCCAGTGCCAGCTTC 61.904 60.000 2.56 0.00 42.71 3.86
101 102 1.908340 CTAGAGCCCAGTGCCAGCTT 61.908 60.000 2.56 0.00 42.71 3.74
102 103 2.284921 TAGAGCCCAGTGCCAGCT 60.285 61.111 0.67 0.67 42.71 4.24
103 104 2.188994 CTAGAGCCCAGTGCCAGC 59.811 66.667 0.00 0.00 42.71 4.85
104 105 1.557269 AACCTAGAGCCCAGTGCCAG 61.557 60.000 0.00 0.00 42.71 4.85
105 106 0.252513 TAACCTAGAGCCCAGTGCCA 60.253 55.000 0.00 0.00 42.71 4.92
106 107 0.909623 TTAACCTAGAGCCCAGTGCC 59.090 55.000 0.00 0.00 42.71 5.01
107 108 3.244249 CCTATTAACCTAGAGCCCAGTGC 60.244 52.174 0.00 0.00 41.71 4.40
108 109 3.967987 ACCTATTAACCTAGAGCCCAGTG 59.032 47.826 0.00 0.00 0.00 3.66
109 110 4.282292 ACCTATTAACCTAGAGCCCAGT 57.718 45.455 0.00 0.00 0.00 4.00
110 111 5.839606 ACTAACCTATTAACCTAGAGCCCAG 59.160 44.000 0.00 0.00 0.00 4.45
111 112 5.785123 ACTAACCTATTAACCTAGAGCCCA 58.215 41.667 0.00 0.00 0.00 5.36
112 113 5.245751 GGACTAACCTATTAACCTAGAGCCC 59.754 48.000 0.00 0.00 35.41 5.19
113 114 5.245751 GGGACTAACCTATTAACCTAGAGCC 59.754 48.000 0.00 0.00 38.98 4.70
114 115 5.837438 TGGGACTAACCTATTAACCTAGAGC 59.163 44.000 0.00 0.00 38.98 4.09
115 116 7.909485 TTGGGACTAACCTATTAACCTAGAG 57.091 40.000 0.00 0.00 38.98 2.43
116 117 8.683776 TTTTGGGACTAACCTATTAACCTAGA 57.316 34.615 0.00 0.00 38.98 2.43
117 118 9.916360 ATTTTTGGGACTAACCTATTAACCTAG 57.084 33.333 0.00 0.00 38.98 3.02
118 119 9.910267 GATTTTTGGGACTAACCTATTAACCTA 57.090 33.333 0.00 0.00 38.98 3.08
119 120 8.395605 TGATTTTTGGGACTAACCTATTAACCT 58.604 33.333 0.00 0.00 38.98 3.50
120 121 8.584063 TGATTTTTGGGACTAACCTATTAACC 57.416 34.615 0.00 0.00 38.98 2.85
128 129 9.476202 GCATTTATATGATTTTTGGGACTAACC 57.524 33.333 0.00 0.00 33.37 2.85
214 215 2.000447 GCACCTTGATACGTCTCCAAC 59.000 52.381 0.00 0.00 0.00 3.77
215 216 1.403647 CGCACCTTGATACGTCTCCAA 60.404 52.381 0.00 0.00 0.00 3.53
216 217 0.172578 CGCACCTTGATACGTCTCCA 59.827 55.000 0.00 0.00 0.00 3.86
217 218 0.527817 CCGCACCTTGATACGTCTCC 60.528 60.000 0.00 0.00 0.00 3.71
218 219 0.454600 TCCGCACCTTGATACGTCTC 59.545 55.000 0.00 0.00 0.00 3.36
219 220 0.456221 CTCCGCACCTTGATACGTCT 59.544 55.000 0.00 0.00 0.00 4.18
220 221 0.527817 CCTCCGCACCTTGATACGTC 60.528 60.000 0.00 0.00 0.00 4.34
221 222 1.255667 ACCTCCGCACCTTGATACGT 61.256 55.000 0.00 0.00 0.00 3.57
222 223 0.806102 CACCTCCGCACCTTGATACG 60.806 60.000 0.00 0.00 0.00 3.06
223 224 1.090052 GCACCTCCGCACCTTGATAC 61.090 60.000 0.00 0.00 0.00 2.24
224 225 1.220749 GCACCTCCGCACCTTGATA 59.779 57.895 0.00 0.00 0.00 2.15
225 226 2.045926 GCACCTCCGCACCTTGAT 60.046 61.111 0.00 0.00 0.00 2.57
226 227 4.329545 GGCACCTCCGCACCTTGA 62.330 66.667 0.00 0.00 0.00 3.02
241 242 4.821589 CTCCTTGGGCTCGTCGGC 62.822 72.222 0.00 0.00 37.49 5.54
242 243 4.821589 GCTCCTTGGGCTCGTCGG 62.822 72.222 0.00 0.00 0.00 4.79
243 244 3.764466 AGCTCCTTGGGCTCGTCG 61.764 66.667 0.00 0.00 34.70 5.12
244 245 2.125350 CAGCTCCTTGGGCTCGTC 60.125 66.667 0.00 0.00 38.03 4.20
245 246 3.710722 CCAGCTCCTTGGGCTCGT 61.711 66.667 0.00 0.00 38.03 4.18
246 247 2.866085 CTTCCAGCTCCTTGGGCTCG 62.866 65.000 0.00 0.00 38.03 5.03
247 248 1.077858 CTTCCAGCTCCTTGGGCTC 60.078 63.158 0.00 0.00 38.03 4.70
248 249 2.610519 CCTTCCAGCTCCTTGGGCT 61.611 63.158 0.00 0.00 41.07 5.19
249 250 2.044551 CCTTCCAGCTCCTTGGGC 60.045 66.667 0.00 0.00 38.81 5.36
250 251 1.606531 CTCCTTCCAGCTCCTTGGG 59.393 63.158 0.00 0.00 38.81 4.12
251 252 1.077858 GCTCCTTCCAGCTCCTTGG 60.078 63.158 0.00 0.00 39.70 3.61
252 253 1.449246 CGCTCCTTCCAGCTCCTTG 60.449 63.158 0.00 0.00 37.25 3.61
253 254 2.985456 CGCTCCTTCCAGCTCCTT 59.015 61.111 0.00 0.00 37.25 3.36
254 255 3.780173 GCGCTCCTTCCAGCTCCT 61.780 66.667 0.00 0.00 37.25 3.69
255 256 4.087892 TGCGCTCCTTCCAGCTCC 62.088 66.667 9.73 0.00 37.25 4.70
256 257 2.511145 CTGCGCTCCTTCCAGCTC 60.511 66.667 9.73 0.00 37.25 4.09
257 258 4.774503 GCTGCGCTCCTTCCAGCT 62.775 66.667 9.73 0.00 46.28 4.24
284 285 4.760047 ACGGACATGGACCTGCGC 62.760 66.667 0.00 0.00 0.00 6.09
285 286 2.509336 GACGGACATGGACCTGCG 60.509 66.667 0.00 0.00 0.00 5.18
286 287 2.509336 CGACGGACATGGACCTGC 60.509 66.667 0.00 0.00 0.00 4.85
287 288 2.184322 CCGACGGACATGGACCTG 59.816 66.667 8.64 0.28 0.00 4.00
288 289 3.075005 CCCGACGGACATGGACCT 61.075 66.667 17.49 0.00 0.00 3.85
289 290 4.832608 GCCCGACGGACATGGACC 62.833 72.222 17.49 0.00 0.00 4.46
290 291 4.077184 TGCCCGACGGACATGGAC 62.077 66.667 17.49 0.00 0.00 4.02
291 292 3.770040 CTGCCCGACGGACATGGA 61.770 66.667 17.49 0.00 0.00 3.41
292 293 4.838152 CCTGCCCGACGGACATGG 62.838 72.222 17.49 9.76 0.00 3.66
293 294 4.838152 CCCTGCCCGACGGACATG 62.838 72.222 17.49 7.02 0.00 3.21
325 326 3.264845 ATCACCACCACCCCCACC 61.265 66.667 0.00 0.00 0.00 4.61
326 327 2.035626 CATCACCACCACCCCCAC 59.964 66.667 0.00 0.00 0.00 4.61
327 328 2.121735 TCATCACCACCACCCCCA 60.122 61.111 0.00 0.00 0.00 4.96
328 329 2.677228 CTCATCACCACCACCCCC 59.323 66.667 0.00 0.00 0.00 5.40
329 330 1.923395 TCCTCATCACCACCACCCC 60.923 63.158 0.00 0.00 0.00 4.95
330 331 1.299976 GTCCTCATCACCACCACCC 59.700 63.158 0.00 0.00 0.00 4.61
331 332 1.079127 CGTCCTCATCACCACCACC 60.079 63.158 0.00 0.00 0.00 4.61
332 333 1.741770 GCGTCCTCATCACCACCAC 60.742 63.158 0.00 0.00 0.00 4.16
333 334 2.662596 GCGTCCTCATCACCACCA 59.337 61.111 0.00 0.00 0.00 4.17
334 335 2.509336 CGCGTCCTCATCACCACC 60.509 66.667 0.00 0.00 0.00 4.61
335 336 2.279502 TAGCGCGTCCTCATCACCAC 62.280 60.000 8.43 0.00 0.00 4.16
336 337 2.004808 CTAGCGCGTCCTCATCACCA 62.005 60.000 8.43 0.00 0.00 4.17
337 338 1.299468 CTAGCGCGTCCTCATCACC 60.299 63.158 8.43 0.00 0.00 4.02
338 339 1.946650 GCTAGCGCGTCCTCATCAC 60.947 63.158 8.43 0.00 0.00 3.06
339 340 2.413351 GCTAGCGCGTCCTCATCA 59.587 61.111 8.43 0.00 0.00 3.07
340 341 2.355244 GGCTAGCGCGTCCTCATC 60.355 66.667 8.43 0.00 36.88 2.92
341 342 4.271816 CGGCTAGCGCGTCCTCAT 62.272 66.667 8.43 0.00 36.88 2.90
343 344 3.486252 ATTCGGCTAGCGCGTCCTC 62.486 63.158 20.20 0.91 36.88 3.71
344 345 3.486252 GATTCGGCTAGCGCGTCCT 62.486 63.158 20.20 0.00 36.88 3.85
345 346 3.030882 GATTCGGCTAGCGCGTCC 61.031 66.667 20.20 3.38 36.88 4.79
346 347 3.030882 GGATTCGGCTAGCGCGTC 61.031 66.667 20.20 13.52 36.88 5.19
347 348 4.587189 GGGATTCGGCTAGCGCGT 62.587 66.667 20.20 6.88 36.88 6.01
349 350 4.280494 TCGGGATTCGGCTAGCGC 62.280 66.667 9.00 0.00 39.77 5.92
350 351 2.354773 GTCGGGATTCGGCTAGCG 60.355 66.667 9.00 4.38 40.86 4.26
351 352 2.029221 GGTCGGGATTCGGCTAGC 59.971 66.667 6.04 6.04 44.01 3.42
352 353 2.335369 CGGTCGGGATTCGGCTAG 59.665 66.667 0.00 0.00 44.01 3.42
353 354 3.908081 GCGGTCGGGATTCGGCTA 61.908 66.667 0.00 0.00 44.01 3.93
357 358 4.514577 AGCAGCGGTCGGGATTCG 62.515 66.667 0.00 0.00 40.90 3.34
358 359 2.586357 GAGCAGCGGTCGGGATTC 60.586 66.667 0.00 0.00 0.00 2.52
359 360 4.162690 GGAGCAGCGGTCGGGATT 62.163 66.667 0.00 0.00 0.00 3.01
395 396 3.839432 CTCGAGCTTCGGGTCCCC 61.839 72.222 1.00 0.00 40.88 4.81
396 397 2.754658 TCTCGAGCTTCGGGTCCC 60.755 66.667 7.81 0.00 41.96 4.46
397 398 1.720694 CTCTCTCGAGCTTCGGGTCC 61.721 65.000 7.81 0.00 41.96 4.46
398 399 1.720694 CCTCTCTCGAGCTTCGGGTC 61.721 65.000 7.81 0.00 41.96 4.46
399 400 1.751162 CCTCTCTCGAGCTTCGGGT 60.751 63.158 7.81 0.00 41.96 5.28
400 401 2.485795 CCCTCTCTCGAGCTTCGGG 61.486 68.421 7.81 10.73 42.83 5.14
401 402 1.316706 AACCCTCTCTCGAGCTTCGG 61.317 60.000 7.81 7.20 40.88 4.30
402 403 0.179150 CAACCCTCTCTCGAGCTTCG 60.179 60.000 7.81 0.00 42.10 3.79
403 404 0.174617 CCAACCCTCTCTCGAGCTTC 59.825 60.000 7.81 0.00 35.90 3.86
404 405 1.261238 CCCAACCCTCTCTCGAGCTT 61.261 60.000 7.81 0.00 35.90 3.74
405 406 1.684049 CCCAACCCTCTCTCGAGCT 60.684 63.158 7.81 0.00 35.90 4.09
406 407 2.726351 CCCCAACCCTCTCTCGAGC 61.726 68.421 7.81 0.00 35.90 5.03
407 408 1.000486 TCCCCAACCCTCTCTCGAG 60.000 63.158 5.93 5.93 37.01 4.04
408 409 1.000486 CTCCCCAACCCTCTCTCGA 60.000 63.158 0.00 0.00 0.00 4.04
409 410 1.000486 TCTCCCCAACCCTCTCTCG 60.000 63.158 0.00 0.00 0.00 4.04
410 411 0.689412 CCTCTCCCCAACCCTCTCTC 60.689 65.000 0.00 0.00 0.00 3.20
411 412 1.156322 TCCTCTCCCCAACCCTCTCT 61.156 60.000 0.00 0.00 0.00 3.10
412 413 0.689412 CTCCTCTCCCCAACCCTCTC 60.689 65.000 0.00 0.00 0.00 3.20
413 414 1.394151 CTCCTCTCCCCAACCCTCT 59.606 63.158 0.00 0.00 0.00 3.69
414 415 2.371259 GCTCCTCTCCCCAACCCTC 61.371 68.421 0.00 0.00 0.00 4.30
415 416 2.285743 GCTCCTCTCCCCAACCCT 60.286 66.667 0.00 0.00 0.00 4.34
416 417 3.412408 GGCTCCTCTCCCCAACCC 61.412 72.222 0.00 0.00 0.00 4.11
417 418 3.787001 CGGCTCCTCTCCCCAACC 61.787 72.222 0.00 0.00 0.00 3.77
418 419 4.475135 GCGGCTCCTCTCCCCAAC 62.475 72.222 0.00 0.00 0.00 3.77
420 421 4.804420 ATGCGGCTCCTCTCCCCA 62.804 66.667 0.00 0.00 0.00 4.96
421 422 3.934962 GATGCGGCTCCTCTCCCC 61.935 72.222 0.00 0.00 0.00 4.81
422 423 3.157252 TGATGCGGCTCCTCTCCC 61.157 66.667 0.00 0.00 0.00 4.30
423 424 2.420890 CTGATGCGGCTCCTCTCC 59.579 66.667 0.00 0.00 0.00 3.71
424 425 2.130426 TCCTGATGCGGCTCCTCTC 61.130 63.158 0.00 0.00 0.00 3.20
425 426 2.042537 TCCTGATGCGGCTCCTCT 60.043 61.111 0.00 0.00 0.00 3.69
426 427 2.107953 GTCCTGATGCGGCTCCTC 59.892 66.667 0.00 0.00 0.00 3.71
427 428 2.685017 TGTCCTGATGCGGCTCCT 60.685 61.111 0.00 0.00 0.00 3.69
428 429 2.202987 CTGTCCTGATGCGGCTCC 60.203 66.667 0.00 0.00 0.00 4.70
429 430 2.894387 GCTGTCCTGATGCGGCTC 60.894 66.667 0.00 0.00 34.40 4.70
430 431 4.827087 CGCTGTCCTGATGCGGCT 62.827 66.667 0.00 0.00 45.07 5.52
434 435 3.503363 GGCACGCTGTCCTGATGC 61.503 66.667 0.00 0.00 35.51 3.91
435 436 2.821366 GGGCACGCTGTCCTGATG 60.821 66.667 1.95 0.00 39.55 3.07
436 437 3.320879 CTGGGCACGCTGTCCTGAT 62.321 63.158 9.50 0.00 44.07 2.90
437 438 4.007644 CTGGGCACGCTGTCCTGA 62.008 66.667 9.50 0.00 44.07 3.86
468 469 4.711949 ACTCCCTGGCTTGCTGCG 62.712 66.667 0.00 0.00 44.05 5.18
469 470 2.282745 AACTCCCTGGCTTGCTGC 60.283 61.111 0.00 0.00 41.94 5.25
470 471 2.633509 GCAACTCCCTGGCTTGCTG 61.634 63.158 12.27 0.00 37.82 4.41
471 472 2.282745 GCAACTCCCTGGCTTGCT 60.283 61.111 12.27 0.00 37.82 3.91
472 473 2.598394 TGCAACTCCCTGGCTTGC 60.598 61.111 12.52 12.52 40.63 4.01
473 474 2.633509 GCTGCAACTCCCTGGCTTG 61.634 63.158 0.00 0.00 0.00 4.01
474 475 2.282745 GCTGCAACTCCCTGGCTT 60.283 61.111 0.00 0.00 0.00 4.35
475 476 4.357279 GGCTGCAACTCCCTGGCT 62.357 66.667 0.50 0.00 0.00 4.75
493 494 1.855441 TAAAACTCCTTCCCCCGGCC 61.855 60.000 0.00 0.00 0.00 6.13
494 495 0.393944 CTAAAACTCCTTCCCCCGGC 60.394 60.000 0.00 0.00 0.00 6.13
495 496 1.282382 TCTAAAACTCCTTCCCCCGG 58.718 55.000 0.00 0.00 0.00 5.73
496 497 2.158798 GGATCTAAAACTCCTTCCCCCG 60.159 54.545 0.00 0.00 0.00 5.73
497 498 3.117851 CAGGATCTAAAACTCCTTCCCCC 60.118 52.174 0.00 0.00 39.95 5.40
498 499 3.780850 TCAGGATCTAAAACTCCTTCCCC 59.219 47.826 0.00 0.00 39.95 4.81
499 500 4.471747 ACTCAGGATCTAAAACTCCTTCCC 59.528 45.833 0.00 0.00 39.95 3.97
500 501 5.685520 ACTCAGGATCTAAAACTCCTTCC 57.314 43.478 0.00 0.00 39.95 3.46
501 502 6.608002 TCCTACTCAGGATCTAAAACTCCTTC 59.392 42.308 0.00 0.00 46.58 3.46
502 503 6.503944 TCCTACTCAGGATCTAAAACTCCTT 58.496 40.000 0.00 0.00 46.58 3.36
503 504 6.093617 TCCTACTCAGGATCTAAAACTCCT 57.906 41.667 0.00 0.00 46.58 3.69
516 517 1.830408 CGCCCCTCTCCTACTCAGG 60.830 68.421 0.00 0.00 44.17 3.86
517 518 2.494530 GCGCCCCTCTCCTACTCAG 61.495 68.421 0.00 0.00 0.00 3.35
518 519 2.442272 GCGCCCCTCTCCTACTCA 60.442 66.667 0.00 0.00 0.00 3.41
519 520 3.597728 CGCGCCCCTCTCCTACTC 61.598 72.222 0.00 0.00 0.00 2.59
544 545 4.521062 CTCCTCCTTGCGCCCTCG 62.521 72.222 4.18 0.00 39.07 4.63
545 546 4.168291 CCTCCTCCTTGCGCCCTC 62.168 72.222 4.18 0.00 0.00 4.30
552 553 3.474570 CTCCGGGCCTCCTCCTTG 61.475 72.222 0.84 0.00 0.00 3.61
553 554 4.806339 CCTCCGGGCCTCCTCCTT 62.806 72.222 0.84 0.00 0.00 3.36
582 583 3.781307 TTCCTGATCCGGCGGGTG 61.781 66.667 27.98 7.99 35.72 4.61
583 584 3.782443 GTTCCTGATCCGGCGGGT 61.782 66.667 27.98 21.98 35.72 5.28
584 585 3.781307 TGTTCCTGATCCGGCGGG 61.781 66.667 27.98 9.72 35.54 6.13
585 586 2.511600 GTGTTCCTGATCCGGCGG 60.512 66.667 22.51 22.51 0.00 6.13
586 587 2.511600 GGTGTTCCTGATCCGGCG 60.512 66.667 0.00 0.00 0.00 6.46
587 588 2.990479 AGGTGTTCCTGATCCGGC 59.010 61.111 0.00 0.00 43.33 6.13
603 604 2.840102 CCCTACCCTCCTCCGCAG 60.840 72.222 0.00 0.00 0.00 5.18
604 605 4.475444 CCCCTACCCTCCTCCGCA 62.475 72.222 0.00 0.00 0.00 5.69
605 606 4.153330 TCCCCTACCCTCCTCCGC 62.153 72.222 0.00 0.00 0.00 5.54
606 607 2.198980 CTCCCCTACCCTCCTCCG 59.801 72.222 0.00 0.00 0.00 4.63
607 608 2.615773 CCTCCCCTACCCTCCTCC 59.384 72.222 0.00 0.00 0.00 4.30
608 609 2.615773 CCCTCCCCTACCCTCCTC 59.384 72.222 0.00 0.00 0.00 3.71
609 610 3.043404 CCCCTCCCCTACCCTCCT 61.043 72.222 0.00 0.00 0.00 3.69
610 611 4.188511 CCCCCTCCCCTACCCTCC 62.189 77.778 0.00 0.00 0.00 4.30
611 612 3.040814 TCCCCCTCCCCTACCCTC 61.041 72.222 0.00 0.00 0.00 4.30
612 613 3.374742 GTCCCCCTCCCCTACCCT 61.375 72.222 0.00 0.00 0.00 4.34
613 614 4.874533 CGTCCCCCTCCCCTACCC 62.875 77.778 0.00 0.00 0.00 3.69
638 639 4.888325 CTCCCCGAGCCCTCCCAT 62.888 72.222 0.00 0.00 0.00 4.00
653 654 3.721706 CACCCAGCAGACCCCCTC 61.722 72.222 0.00 0.00 0.00 4.30
661 662 4.845580 CTAGCCGCCACCCAGCAG 62.846 72.222 0.00 0.00 0.00 4.24
666 667 4.484872 GAACCCTAGCCGCCACCC 62.485 72.222 0.00 0.00 0.00 4.61
667 668 4.484872 GGAACCCTAGCCGCCACC 62.485 72.222 0.00 0.00 0.00 4.61
692 693 4.452733 GTCCCTCTTCCACGGGCG 62.453 72.222 0.00 0.00 40.41 6.13
693 694 3.319198 TGTCCCTCTTCCACGGGC 61.319 66.667 0.00 0.00 40.41 6.13
694 695 0.613853 TAGTGTCCCTCTTCCACGGG 60.614 60.000 0.00 0.00 42.05 5.28
695 696 0.531200 GTAGTGTCCCTCTTCCACGG 59.469 60.000 0.00 0.00 34.34 4.94
696 697 1.254026 TGTAGTGTCCCTCTTCCACG 58.746 55.000 0.00 0.00 34.34 4.94
697 698 3.983044 AATGTAGTGTCCCTCTTCCAC 57.017 47.619 0.00 0.00 0.00 4.02
698 699 5.091552 ACTTAATGTAGTGTCCCTCTTCCA 58.908 41.667 0.00 0.00 0.00 3.53
699 700 5.678955 ACTTAATGTAGTGTCCCTCTTCC 57.321 43.478 0.00 0.00 0.00 3.46
700 701 7.117956 GTCAAACTTAATGTAGTGTCCCTCTTC 59.882 40.741 0.00 0.00 0.00 2.87
701 702 6.935208 GTCAAACTTAATGTAGTGTCCCTCTT 59.065 38.462 0.00 0.00 0.00 2.85
702 703 6.465084 GTCAAACTTAATGTAGTGTCCCTCT 58.535 40.000 0.00 0.00 0.00 3.69
703 704 5.642491 GGTCAAACTTAATGTAGTGTCCCTC 59.358 44.000 0.00 0.00 0.00 4.30
704 705 5.072600 TGGTCAAACTTAATGTAGTGTCCCT 59.927 40.000 0.00 0.00 0.00 4.20
705 706 5.310451 TGGTCAAACTTAATGTAGTGTCCC 58.690 41.667 0.00 0.00 0.00 4.46
706 707 6.228258 TCTGGTCAAACTTAATGTAGTGTCC 58.772 40.000 0.00 0.00 0.00 4.02
707 708 7.907214 ATCTGGTCAAACTTAATGTAGTGTC 57.093 36.000 0.00 0.00 0.00 3.67
708 709 8.691661 AAATCTGGTCAAACTTAATGTAGTGT 57.308 30.769 0.00 0.00 0.00 3.55
717 718 8.726988 GCAACATACTAAATCTGGTCAAACTTA 58.273 33.333 0.00 0.00 0.00 2.24
718 719 7.230510 TGCAACATACTAAATCTGGTCAAACTT 59.769 33.333 0.00 0.00 0.00 2.66
719 720 6.714810 TGCAACATACTAAATCTGGTCAAACT 59.285 34.615 0.00 0.00 0.00 2.66
720 721 6.908825 TGCAACATACTAAATCTGGTCAAAC 58.091 36.000 0.00 0.00 0.00 2.93
721 722 7.517614 TTGCAACATACTAAATCTGGTCAAA 57.482 32.000 0.00 0.00 0.00 2.69
722 723 7.517614 TTTGCAACATACTAAATCTGGTCAA 57.482 32.000 0.00 0.00 0.00 3.18
723 724 7.517614 TTTTGCAACATACTAAATCTGGTCA 57.482 32.000 0.00 0.00 0.00 4.02
724 725 8.986477 ATTTTTGCAACATACTAAATCTGGTC 57.014 30.769 0.00 0.00 0.00 4.02
737 738 9.926158 TCATGTAGATGTTAATTTTTGCAACAT 57.074 25.926 0.00 0.00 43.65 2.71
738 739 9.926158 ATCATGTAGATGTTAATTTTTGCAACA 57.074 25.926 0.00 0.00 35.06 3.33
838 840 5.957842 TTGTCTGAAGCGACCAATTTTAT 57.042 34.783 0.00 0.00 32.97 1.40
854 856 7.277981 GTGTATAGGTGGAGTACAATTTGTCTG 59.722 40.741 5.07 0.00 30.87 3.51
855 857 7.038587 TGTGTATAGGTGGAGTACAATTTGTCT 60.039 37.037 5.07 3.48 30.87 3.41
856 858 7.064253 GTGTGTATAGGTGGAGTACAATTTGTC 59.936 40.741 5.07 0.00 30.87 3.18
857 859 6.877322 GTGTGTATAGGTGGAGTACAATTTGT 59.123 38.462 7.30 7.30 30.87 2.83
858 860 6.876789 TGTGTGTATAGGTGGAGTACAATTTG 59.123 38.462 0.00 0.00 30.87 2.32
859 861 7.011499 TGTGTGTATAGGTGGAGTACAATTT 57.989 36.000 0.00 0.00 30.87 1.82
860 862 6.614694 TGTGTGTATAGGTGGAGTACAATT 57.385 37.500 0.00 0.00 30.87 2.32
861 863 5.395324 GCTGTGTGTATAGGTGGAGTACAAT 60.395 44.000 0.00 0.00 30.87 2.71
862 864 4.081862 GCTGTGTGTATAGGTGGAGTACAA 60.082 45.833 0.00 0.00 30.87 2.41
863 865 3.446161 GCTGTGTGTATAGGTGGAGTACA 59.554 47.826 0.00 0.00 0.00 2.90
864 866 3.181478 GGCTGTGTGTATAGGTGGAGTAC 60.181 52.174 0.00 0.00 0.00 2.73
865 867 3.028850 GGCTGTGTGTATAGGTGGAGTA 58.971 50.000 0.00 0.00 0.00 2.59
866 868 1.831736 GGCTGTGTGTATAGGTGGAGT 59.168 52.381 0.00 0.00 0.00 3.85
867 869 1.831106 TGGCTGTGTGTATAGGTGGAG 59.169 52.381 0.00 0.00 0.00 3.86
868 870 1.945580 TGGCTGTGTGTATAGGTGGA 58.054 50.000 0.00 0.00 0.00 4.02
869 871 2.779755 TTGGCTGTGTGTATAGGTGG 57.220 50.000 0.00 0.00 0.00 4.61
870 872 2.420022 GCTTTGGCTGTGTGTATAGGTG 59.580 50.000 0.00 0.00 35.22 4.00
871 873 2.618045 GGCTTTGGCTGTGTGTATAGGT 60.618 50.000 0.00 0.00 38.73 3.08
872 874 2.017049 GGCTTTGGCTGTGTGTATAGG 58.983 52.381 0.00 0.00 38.73 2.57
873 875 1.665679 CGGCTTTGGCTGTGTGTATAG 59.334 52.381 0.00 0.00 39.80 1.31
874 876 1.677518 CCGGCTTTGGCTGTGTGTATA 60.678 52.381 0.00 0.00 42.91 1.47
887 889 2.332654 GGATTCACACGCCGGCTTT 61.333 57.895 26.68 8.48 0.00 3.51
1233 1252 2.099427 GAGGGTGTAGTCGAAGATGTCC 59.901 54.545 0.00 0.00 40.67 4.02
1742 1770 3.532155 GTCCTCGGGCATCTCGCT 61.532 66.667 0.00 0.00 41.91 4.93
1989 2024 3.120649 GCTTCTTGGTGTTCATGTCGTAC 60.121 47.826 0.00 0.00 0.00 3.67
2117 2152 1.893544 ACAAGAAGAGAGGTCGTCGA 58.106 50.000 0.00 0.00 36.40 4.20
2122 2157 3.166679 ACAGGGTACAAGAAGAGAGGTC 58.833 50.000 0.00 0.00 0.00 3.85
2207 2254 5.775686 TGAAACAGAGGCATTTCAAAGATG 58.224 37.500 0.00 0.00 40.85 2.90
2368 2446 0.095245 CTACCGTGCACGCTCAATTG 59.905 55.000 33.17 19.59 38.18 2.32
2435 2539 8.693542 ATATTTTGTGCATTCTCAGTTTAAGC 57.306 30.769 0.00 0.00 0.00 3.09
2472 2576 6.763355 TGCTAGAAATTATCTGAGGACCATC 58.237 40.000 0.00 0.00 39.30 3.51
2522 2636 2.203070 CTTCGGGGGATTGCTCCG 60.203 66.667 10.68 10.68 43.11 4.63
2674 2808 5.454062 TCTTGAGAAAACTTCATTGGGGAA 58.546 37.500 0.00 0.00 0.00 3.97
2675 2809 5.060427 TCTTGAGAAAACTTCATTGGGGA 57.940 39.130 0.00 0.00 0.00 4.81
2676 2810 5.477984 TCATCTTGAGAAAACTTCATTGGGG 59.522 40.000 0.00 0.00 0.00 4.96
2677 2811 6.579666 TCATCTTGAGAAAACTTCATTGGG 57.420 37.500 0.00 0.00 0.00 4.12
2678 2812 7.922278 TGTTTCATCTTGAGAAAACTTCATTGG 59.078 33.333 8.80 0.00 36.80 3.16
2679 2813 8.749499 GTGTTTCATCTTGAGAAAACTTCATTG 58.251 33.333 8.80 0.00 36.80 2.82
2680 2814 8.689972 AGTGTTTCATCTTGAGAAAACTTCATT 58.310 29.630 8.80 0.00 36.80 2.57
2681 2815 8.230472 AGTGTTTCATCTTGAGAAAACTTCAT 57.770 30.769 8.80 0.00 36.80 2.57
2682 2816 7.630242 AGTGTTTCATCTTGAGAAAACTTCA 57.370 32.000 8.80 0.00 36.80 3.02
2683 2817 8.801913 CAAAGTGTTTCATCTTGAGAAAACTTC 58.198 33.333 8.80 4.32 36.49 3.01
2684 2818 7.761249 CCAAAGTGTTTCATCTTGAGAAAACTT 59.239 33.333 8.80 0.00 37.60 2.66
2685 2819 7.260603 CCAAAGTGTTTCATCTTGAGAAAACT 58.739 34.615 8.80 0.00 36.80 2.66
2686 2820 6.019559 GCCAAAGTGTTTCATCTTGAGAAAAC 60.020 38.462 0.00 2.74 36.80 2.43
2687 2821 6.042143 GCCAAAGTGTTTCATCTTGAGAAAA 58.958 36.000 0.00 0.00 36.80 2.29
2688 2822 5.126869 TGCCAAAGTGTTTCATCTTGAGAAA 59.873 36.000 0.00 0.00 32.93 2.52
2689 2823 4.644234 TGCCAAAGTGTTTCATCTTGAGAA 59.356 37.500 0.00 0.00 0.00 2.87
2690 2824 4.206375 TGCCAAAGTGTTTCATCTTGAGA 58.794 39.130 0.00 0.00 0.00 3.27
2691 2825 4.276678 TCTGCCAAAGTGTTTCATCTTGAG 59.723 41.667 0.00 0.00 0.00 3.02
2692 2826 4.206375 TCTGCCAAAGTGTTTCATCTTGA 58.794 39.130 0.00 0.00 0.00 3.02
2693 2827 4.572985 TCTGCCAAAGTGTTTCATCTTG 57.427 40.909 0.00 0.00 0.00 3.02
2694 2828 5.069516 ACAATCTGCCAAAGTGTTTCATCTT 59.930 36.000 0.00 0.00 0.00 2.40
2695 2829 4.586001 ACAATCTGCCAAAGTGTTTCATCT 59.414 37.500 0.00 0.00 0.00 2.90
2696 2830 4.874970 ACAATCTGCCAAAGTGTTTCATC 58.125 39.130 0.00 0.00 0.00 2.92
2697 2831 4.942761 ACAATCTGCCAAAGTGTTTCAT 57.057 36.364 0.00 0.00 0.00 2.57
2698 2832 5.843673 TTACAATCTGCCAAAGTGTTTCA 57.156 34.783 0.00 0.00 0.00 2.69
2699 2833 7.713764 AATTTACAATCTGCCAAAGTGTTTC 57.286 32.000 0.00 0.00 0.00 2.78
2700 2834 7.012232 CCAAATTTACAATCTGCCAAAGTGTTT 59.988 33.333 0.00 0.00 0.00 2.83
2701 2835 6.482973 CCAAATTTACAATCTGCCAAAGTGTT 59.517 34.615 0.00 0.00 0.00 3.32
2702 2836 5.990996 CCAAATTTACAATCTGCCAAAGTGT 59.009 36.000 0.00 0.00 0.00 3.55
2703 2837 5.106987 GCCAAATTTACAATCTGCCAAAGTG 60.107 40.000 0.00 0.00 0.00 3.16
2704 2838 4.996758 GCCAAATTTACAATCTGCCAAAGT 59.003 37.500 0.00 0.00 0.00 2.66
2705 2839 5.240121 AGCCAAATTTACAATCTGCCAAAG 58.760 37.500 0.00 0.00 0.00 2.77
2706 2840 5.226194 AGCCAAATTTACAATCTGCCAAA 57.774 34.783 0.00 0.00 0.00 3.28
2742 2876 7.665690 TGCCACTTTTAAGATGCAAGAAAATA 58.334 30.769 0.00 0.00 34.79 1.40
2743 2877 6.523840 TGCCACTTTTAAGATGCAAGAAAAT 58.476 32.000 0.00 0.00 34.79 1.82
2756 2890 3.449018 TGGTTTTGAGCTGCCACTTTTAA 59.551 39.130 0.00 0.00 0.00 1.52
2793 2928 6.018994 GCCACTATGAAAACTTTCGACGATAT 60.019 38.462 0.00 0.00 40.01 1.63
2802 2937 4.729868 AGGTCTGCCACTATGAAAACTTT 58.270 39.130 0.00 0.00 37.19 2.66
2857 2992 8.189709 AGTTTGAAAGAACTGCAAAAGAAATC 57.810 30.769 0.00 0.00 38.39 2.17
2961 3096 7.849804 TTCCAGTGAATCAAACTAATAGAGC 57.150 36.000 0.00 0.00 0.00 4.09
2966 3101 7.599998 GCACAATTTCCAGTGAATCAAACTAAT 59.400 33.333 0.00 0.00 37.97 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.