Multiple sequence alignment - TraesCS5D01G291000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G291000 chr5D 100.000 2603 0 0 1 2603 388795734 388793132 0.000000e+00 4807
1 TraesCS5D01G291000 chr5B 91.043 2233 105 38 192 2387 467139252 467137078 0.000000e+00 2928
2 TraesCS5D01G291000 chr5B 89.205 176 17 2 1 175 520372129 520371955 4.360000e-53 219
3 TraesCS5D01G291000 chr5A 89.016 874 38 28 772 1638 491742392 491743214 0.000000e+00 1029
4 TraesCS5D01G291000 chr5A 83.563 797 63 26 1679 2419 491743225 491744009 0.000000e+00 684
5 TraesCS5D01G291000 chr5A 90.020 501 22 7 228 713 491741903 491742390 7.910000e-175 623
6 TraesCS5D01G291000 chr6B 91.351 185 16 0 1 185 623354013 623354197 1.200000e-63 254
7 TraesCS5D01G291000 chrUn 90.909 176 15 1 1 175 260906486 260906661 4.330000e-58 235
8 TraesCS5D01G291000 chrUn 90.341 176 16 1 1 175 42026517 42026342 2.010000e-56 230
9 TraesCS5D01G291000 chrUn 89.655 174 17 1 3 175 369646445 369646272 1.210000e-53 220
10 TraesCS5D01G291000 chr7A 89.189 185 18 2 1 185 526183275 526183457 2.010000e-56 230
11 TraesCS5D01G291000 chr1D 88.770 187 18 3 1 185 315987128 315986943 2.610000e-55 226
12 TraesCS5D01G291000 chr3B 89.655 174 17 1 3 175 800067161 800066988 1.210000e-53 220
13 TraesCS5D01G291000 chr3A 87.500 184 21 2 4 185 562875705 562875522 7.300000e-51 211


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G291000 chr5D 388793132 388795734 2602 True 4807.000000 4807 100.000 1 2603 1 chr5D.!!$R1 2602
1 TraesCS5D01G291000 chr5B 467137078 467139252 2174 True 2928.000000 2928 91.043 192 2387 1 chr5B.!!$R1 2195
2 TraesCS5D01G291000 chr5A 491741903 491744009 2106 False 778.666667 1029 87.533 228 2419 3 chr5A.!!$F1 2191

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.183971 TTCGGCCTTCCAACCTTCAA 59.816 50.0 0.0 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1960 2020 2.106418 GACGCGTTGAAGTTTTGAACC 58.894 47.619 15.53 0.0 0.0 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.434774 GGTTCGGCCTTCCAACCT 59.565 61.111 0.00 0.00 38.93 3.50
28 29 1.228459 GGTTCGGCCTTCCAACCTT 60.228 57.895 0.00 0.00 38.93 3.50
29 30 1.241990 GGTTCGGCCTTCCAACCTTC 61.242 60.000 0.00 0.00 38.93 3.46
30 31 0.536460 GTTCGGCCTTCCAACCTTCA 60.536 55.000 0.00 0.00 0.00 3.02
31 32 0.183971 TTCGGCCTTCCAACCTTCAA 59.816 50.000 0.00 0.00 0.00 2.69
32 33 0.183971 TCGGCCTTCCAACCTTCAAA 59.816 50.000 0.00 0.00 0.00 2.69
33 34 0.313987 CGGCCTTCCAACCTTCAAAC 59.686 55.000 0.00 0.00 0.00 2.93
34 35 1.408969 GGCCTTCCAACCTTCAAACA 58.591 50.000 0.00 0.00 0.00 2.83
35 36 1.970640 GGCCTTCCAACCTTCAAACAT 59.029 47.619 0.00 0.00 0.00 2.71
36 37 3.161866 GGCCTTCCAACCTTCAAACATA 58.838 45.455 0.00 0.00 0.00 2.29
37 38 3.576550 GGCCTTCCAACCTTCAAACATAA 59.423 43.478 0.00 0.00 0.00 1.90
38 39 4.321974 GGCCTTCCAACCTTCAAACATAAG 60.322 45.833 0.00 0.00 0.00 1.73
40 41 4.220602 CCTTCCAACCTTCAAACATAAGGG 59.779 45.833 6.80 0.00 46.56 3.95
41 42 4.463050 TCCAACCTTCAAACATAAGGGT 57.537 40.909 6.80 0.00 45.12 4.34
42 43 4.810345 TCCAACCTTCAAACATAAGGGTT 58.190 39.130 6.80 0.00 41.38 4.11
43 44 5.212745 TCCAACCTTCAAACATAAGGGTTT 58.787 37.500 6.80 0.00 41.38 3.27
44 45 5.303333 TCCAACCTTCAAACATAAGGGTTTC 59.697 40.000 6.80 0.00 41.38 2.78
45 46 5.219633 CAACCTTCAAACATAAGGGTTTCG 58.780 41.667 6.80 0.00 41.38 3.46
46 47 4.721132 ACCTTCAAACATAAGGGTTTCGA 58.279 39.130 6.80 0.00 46.56 3.71
47 48 4.760204 ACCTTCAAACATAAGGGTTTCGAG 59.240 41.667 6.80 0.00 46.56 4.04
48 49 4.760204 CCTTCAAACATAAGGGTTTCGAGT 59.240 41.667 0.00 0.00 38.86 4.18
49 50 5.334879 CCTTCAAACATAAGGGTTTCGAGTG 60.335 44.000 0.00 0.00 38.86 3.51
50 51 4.710324 TCAAACATAAGGGTTTCGAGTGT 58.290 39.130 0.00 0.00 38.86 3.55
51 52 4.513692 TCAAACATAAGGGTTTCGAGTGTG 59.486 41.667 0.00 0.00 38.86 3.82
52 53 2.423577 ACATAAGGGTTTCGAGTGTGC 58.576 47.619 0.00 0.00 0.00 4.57
53 54 2.224426 ACATAAGGGTTTCGAGTGTGCA 60.224 45.455 0.00 0.00 0.00 4.57
54 55 2.851263 TAAGGGTTTCGAGTGTGCAT 57.149 45.000 0.00 0.00 0.00 3.96
55 56 1.523758 AAGGGTTTCGAGTGTGCATC 58.476 50.000 0.00 0.00 0.00 3.91
56 57 0.687354 AGGGTTTCGAGTGTGCATCT 59.313 50.000 0.00 0.00 0.00 2.90
57 58 1.072331 AGGGTTTCGAGTGTGCATCTT 59.928 47.619 0.00 0.00 0.00 2.40
58 59 1.464997 GGGTTTCGAGTGTGCATCTTC 59.535 52.381 0.00 0.00 0.00 2.87
59 60 1.126846 GGTTTCGAGTGTGCATCTTCG 59.873 52.381 9.53 9.53 0.00 3.79
60 61 1.126846 GTTTCGAGTGTGCATCTTCGG 59.873 52.381 14.05 1.51 0.00 4.30
61 62 0.317160 TTCGAGTGTGCATCTTCGGT 59.683 50.000 14.05 0.00 0.00 4.69
62 63 0.388520 TCGAGTGTGCATCTTCGGTG 60.389 55.000 14.05 0.00 0.00 4.94
63 64 1.354337 CGAGTGTGCATCTTCGGTGG 61.354 60.000 8.31 0.00 0.00 4.61
64 65 1.639298 GAGTGTGCATCTTCGGTGGC 61.639 60.000 0.00 0.00 0.00 5.01
65 66 2.359850 TGTGCATCTTCGGTGGCC 60.360 61.111 0.00 0.00 0.00 5.36
66 67 3.134127 GTGCATCTTCGGTGGCCC 61.134 66.667 0.00 0.00 0.00 5.80
67 68 3.329889 TGCATCTTCGGTGGCCCT 61.330 61.111 0.00 0.00 0.00 5.19
68 69 2.044946 GCATCTTCGGTGGCCCTT 60.045 61.111 0.00 0.00 0.00 3.95
69 70 1.223487 GCATCTTCGGTGGCCCTTA 59.777 57.895 0.00 0.00 0.00 2.69
70 71 0.393808 GCATCTTCGGTGGCCCTTAA 60.394 55.000 0.00 0.00 0.00 1.85
71 72 1.953311 GCATCTTCGGTGGCCCTTAAA 60.953 52.381 0.00 0.00 0.00 1.52
72 73 2.442413 CATCTTCGGTGGCCCTTAAAA 58.558 47.619 0.00 0.00 0.00 1.52
73 74 2.660670 TCTTCGGTGGCCCTTAAAAA 57.339 45.000 0.00 0.00 0.00 1.94
74 75 3.163616 TCTTCGGTGGCCCTTAAAAAT 57.836 42.857 0.00 0.00 0.00 1.82
75 76 3.502356 TCTTCGGTGGCCCTTAAAAATT 58.498 40.909 0.00 0.00 0.00 1.82
76 77 3.898741 TCTTCGGTGGCCCTTAAAAATTT 59.101 39.130 0.00 0.00 0.00 1.82
77 78 4.345547 TCTTCGGTGGCCCTTAAAAATTTT 59.654 37.500 0.00 0.00 0.00 1.82
78 79 5.539193 TCTTCGGTGGCCCTTAAAAATTTTA 59.461 36.000 3.34 0.00 0.00 1.52
79 80 5.136816 TCGGTGGCCCTTAAAAATTTTAC 57.863 39.130 3.34 0.00 0.00 2.01
80 81 3.921630 CGGTGGCCCTTAAAAATTTTACG 59.078 43.478 3.34 0.00 0.00 3.18
81 82 4.247258 GGTGGCCCTTAAAAATTTTACGG 58.753 43.478 12.45 12.45 0.00 4.02
82 83 4.247258 GTGGCCCTTAAAAATTTTACGGG 58.753 43.478 26.58 26.58 0.00 5.28
83 84 3.902467 TGGCCCTTAAAAATTTTACGGGT 59.098 39.130 29.14 5.86 32.79 5.28
84 85 4.347292 TGGCCCTTAAAAATTTTACGGGTT 59.653 37.500 29.14 5.29 32.79 4.11
85 86 4.691685 GGCCCTTAAAAATTTTACGGGTTG 59.308 41.667 29.14 13.44 32.79 3.77
86 87 5.299148 GCCCTTAAAAATTTTACGGGTTGT 58.701 37.500 29.14 4.14 32.79 3.32
87 88 6.453943 GCCCTTAAAAATTTTACGGGTTGTA 58.546 36.000 29.14 2.98 32.79 2.41
88 89 7.098477 GCCCTTAAAAATTTTACGGGTTGTAT 58.902 34.615 29.14 3.00 31.81 2.29
89 90 7.276218 GCCCTTAAAAATTTTACGGGTTGTATC 59.724 37.037 29.14 15.27 31.81 2.24
90 91 8.305317 CCCTTAAAAATTTTACGGGTTGTATCA 58.695 33.333 24.06 0.00 31.81 2.15
91 92 9.131416 CCTTAAAAATTTTACGGGTTGTATCAC 57.869 33.333 11.78 0.00 31.81 3.06
92 93 9.902196 CTTAAAAATTTTACGGGTTGTATCACT 57.098 29.630 3.34 0.00 31.81 3.41
95 96 9.602568 AAAAATTTTACGGGTTGTATCACTTTT 57.397 25.926 3.34 0.00 31.81 2.27
97 98 9.681692 AAATTTTACGGGTTGTATCACTTTTAC 57.318 29.630 0.00 0.00 31.81 2.01
98 99 6.464895 TTTACGGGTTGTATCACTTTTACG 57.535 37.500 0.00 0.00 31.81 3.18
99 100 4.255833 ACGGGTTGTATCACTTTTACGA 57.744 40.909 0.00 0.00 0.00 3.43
100 101 4.824289 ACGGGTTGTATCACTTTTACGAT 58.176 39.130 0.00 0.00 0.00 3.73
101 102 5.240121 ACGGGTTGTATCACTTTTACGATT 58.760 37.500 0.00 0.00 0.00 3.34
102 103 5.702209 ACGGGTTGTATCACTTTTACGATTT 59.298 36.000 0.00 0.00 0.00 2.17
103 104 6.128472 ACGGGTTGTATCACTTTTACGATTTC 60.128 38.462 0.00 0.00 0.00 2.17
104 105 6.091713 CGGGTTGTATCACTTTTACGATTTCT 59.908 38.462 0.00 0.00 0.00 2.52
105 106 7.241376 GGGTTGTATCACTTTTACGATTTCTG 58.759 38.462 0.00 0.00 0.00 3.02
106 107 7.094933 GGGTTGTATCACTTTTACGATTTCTGT 60.095 37.037 0.00 0.00 0.00 3.41
107 108 8.287503 GGTTGTATCACTTTTACGATTTCTGTT 58.712 33.333 0.00 0.00 0.00 3.16
108 109 9.314501 GTTGTATCACTTTTACGATTTCTGTTC 57.685 33.333 0.00 0.00 0.00 3.18
109 110 8.827177 TGTATCACTTTTACGATTTCTGTTCT 57.173 30.769 0.00 0.00 0.00 3.01
110 111 8.708742 TGTATCACTTTTACGATTTCTGTTCTG 58.291 33.333 0.00 0.00 0.00 3.02
111 112 6.539649 TCACTTTTACGATTTCTGTTCTGG 57.460 37.500 0.00 0.00 0.00 3.86
112 113 6.285224 TCACTTTTACGATTTCTGTTCTGGA 58.715 36.000 0.00 0.00 0.00 3.86
113 114 6.202188 TCACTTTTACGATTTCTGTTCTGGAC 59.798 38.462 0.00 0.00 0.00 4.02
114 115 6.018262 CACTTTTACGATTTCTGTTCTGGACA 60.018 38.462 0.00 0.00 36.65 4.02
115 116 6.710744 ACTTTTACGATTTCTGTTCTGGACAT 59.289 34.615 0.00 0.00 37.69 3.06
116 117 7.228706 ACTTTTACGATTTCTGTTCTGGACATT 59.771 33.333 0.00 0.00 37.69 2.71
117 118 7.504924 TTTACGATTTCTGTTCTGGACATTT 57.495 32.000 0.00 0.00 37.69 2.32
118 119 7.504924 TTACGATTTCTGTTCTGGACATTTT 57.495 32.000 0.00 0.00 37.69 1.82
119 120 6.391227 ACGATTTCTGTTCTGGACATTTTT 57.609 33.333 0.00 0.00 37.69 1.94
161 162 8.896320 AACACAAAAATTATAAGGGTTTGACC 57.104 30.769 18.14 0.00 37.60 4.02
162 163 8.024145 ACACAAAAATTATAAGGGTTTGACCA 57.976 30.769 18.14 0.00 41.02 4.02
163 164 7.929245 ACACAAAAATTATAAGGGTTTGACCAC 59.071 33.333 18.14 0.00 41.02 4.16
164 165 8.147704 CACAAAAATTATAAGGGTTTGACCACT 58.852 33.333 18.14 0.00 41.02 4.00
165 166 8.710239 ACAAAAATTATAAGGGTTTGACCACTT 58.290 29.630 18.14 3.39 41.02 3.16
171 172 9.847224 ATTATAAGGGTTTGACCACTTATACAG 57.153 33.333 17.87 0.00 40.10 2.74
172 173 4.569719 AGGGTTTGACCACTTATACAGG 57.430 45.455 0.00 0.00 41.02 4.00
173 174 3.265995 AGGGTTTGACCACTTATACAGGG 59.734 47.826 0.00 0.00 41.02 4.45
174 175 3.009805 GGGTTTGACCACTTATACAGGGT 59.990 47.826 0.00 0.00 41.02 4.34
175 176 4.507869 GGGTTTGACCACTTATACAGGGTT 60.508 45.833 0.00 0.00 41.02 4.11
176 177 4.698780 GGTTTGACCACTTATACAGGGTTC 59.301 45.833 0.00 0.00 38.42 3.62
177 178 3.880047 TGACCACTTATACAGGGTTCG 57.120 47.619 0.00 0.00 32.77 3.95
178 179 2.498481 TGACCACTTATACAGGGTTCGG 59.502 50.000 0.00 0.00 32.77 4.30
179 180 2.498885 GACCACTTATACAGGGTTCGGT 59.501 50.000 0.00 0.00 32.77 4.69
180 181 3.701040 GACCACTTATACAGGGTTCGGTA 59.299 47.826 0.00 0.00 32.77 4.02
181 182 3.703052 ACCACTTATACAGGGTTCGGTAG 59.297 47.826 0.00 0.00 0.00 3.18
182 183 3.956199 CCACTTATACAGGGTTCGGTAGA 59.044 47.826 0.00 0.00 0.00 2.59
183 184 4.037684 CCACTTATACAGGGTTCGGTAGAG 59.962 50.000 0.00 0.00 0.00 2.43
184 185 4.885907 CACTTATACAGGGTTCGGTAGAGA 59.114 45.833 0.00 0.00 0.00 3.10
185 186 5.359009 CACTTATACAGGGTTCGGTAGAGAA 59.641 44.000 0.00 0.00 0.00 2.87
187 188 2.305858 ACAGGGTTCGGTAGAGAACT 57.694 50.000 9.31 0.00 46.99 3.01
188 189 3.446442 ACAGGGTTCGGTAGAGAACTA 57.554 47.619 9.31 0.00 46.99 2.24
189 190 3.771216 ACAGGGTTCGGTAGAGAACTAA 58.229 45.455 9.31 0.00 46.99 2.24
190 191 3.762823 ACAGGGTTCGGTAGAGAACTAAG 59.237 47.826 9.31 3.25 46.99 2.18
199 200 5.066634 TCGGTAGAGAACTAAGATGCTCTTG 59.933 44.000 0.00 2.89 37.29 3.02
201 202 5.163457 GGTAGAGAACTAAGATGCTCTTGCT 60.163 44.000 0.00 2.32 37.29 3.91
211 212 1.370900 GCTCTTGCTGCCAAACACG 60.371 57.895 0.00 0.00 36.03 4.49
212 213 1.283793 CTCTTGCTGCCAAACACGG 59.716 57.895 0.00 0.00 0.00 4.94
264 265 2.833582 GATCTCTCCCCGCGACCA 60.834 66.667 8.23 0.00 0.00 4.02
346 358 0.889186 GGAAAGCCGAGCAAAGGTCA 60.889 55.000 0.00 0.00 0.00 4.02
439 451 2.191802 CAACGTTTGACAAATGCTGCA 58.808 42.857 18.10 4.13 0.00 4.41
449 464 0.673333 AAATGCTGCATCGTCCGTCA 60.673 50.000 16.55 0.00 0.00 4.35
578 594 3.802418 AACGGCGGCGAAAGTCAGT 62.802 57.895 38.93 10.08 33.27 3.41
757 773 4.452733 CGGGTCCAAGGCCTCGTC 62.453 72.222 5.23 0.00 0.00 4.20
758 774 3.003763 GGGTCCAAGGCCTCGTCT 61.004 66.667 5.23 0.00 0.00 4.18
759 775 2.579738 GGTCCAAGGCCTCGTCTC 59.420 66.667 5.23 0.00 0.00 3.36
760 776 1.985116 GGTCCAAGGCCTCGTCTCT 60.985 63.158 5.23 0.00 0.00 3.10
761 777 1.513622 GTCCAAGGCCTCGTCTCTC 59.486 63.158 5.23 0.00 0.00 3.20
762 778 1.682684 TCCAAGGCCTCGTCTCTCC 60.683 63.158 5.23 0.00 0.00 3.71
763 779 1.984570 CCAAGGCCTCGTCTCTCCA 60.985 63.158 5.23 0.00 0.00 3.86
764 780 1.544825 CCAAGGCCTCGTCTCTCCAA 61.545 60.000 5.23 0.00 0.00 3.53
765 781 0.390472 CAAGGCCTCGTCTCTCCAAC 60.390 60.000 5.23 0.00 0.00 3.77
766 782 1.545706 AAGGCCTCGTCTCTCCAACC 61.546 60.000 5.23 0.00 0.00 3.77
770 786 1.608717 CCTCGTCTCTCCAACCCCAG 61.609 65.000 0.00 0.00 0.00 4.45
805 821 3.590630 AGTCTACCTGGGTACAGTACTGA 59.409 47.826 29.30 10.19 43.36 3.41
806 822 3.693578 GTCTACCTGGGTACAGTACTGAC 59.306 52.174 29.30 20.24 43.36 3.51
902 922 4.717629 CGTCCACGAGCGAGCCAA 62.718 66.667 0.00 0.00 43.02 4.52
904 924 2.167861 GTCCACGAGCGAGCCAATC 61.168 63.158 0.00 0.00 0.00 2.67
905 925 2.892425 CCACGAGCGAGCCAATCC 60.892 66.667 0.00 0.00 0.00 3.01
906 926 2.125552 CACGAGCGAGCCAATCCA 60.126 61.111 0.00 0.00 0.00 3.41
907 927 2.125512 ACGAGCGAGCCAATCCAC 60.126 61.111 0.00 0.00 0.00 4.02
908 928 2.125552 CGAGCGAGCCAATCCACA 60.126 61.111 0.00 0.00 0.00 4.17
1122 1143 2.804090 GACGACGTTCAGGGCGAC 60.804 66.667 0.13 0.00 0.00 5.19
1605 1629 0.603569 TCCTCAACCTCTTCTGACGC 59.396 55.000 0.00 0.00 0.00 5.19
1607 1631 0.734253 CTCAACCTCTTCTGACGCCG 60.734 60.000 0.00 0.00 0.00 6.46
1608 1632 1.176619 TCAACCTCTTCTGACGCCGA 61.177 55.000 0.00 0.00 0.00 5.54
1609 1633 1.009389 CAACCTCTTCTGACGCCGAC 61.009 60.000 0.00 0.00 0.00 4.79
1611 1635 2.687805 CCTCTTCTGACGCCGACGA 61.688 63.158 0.00 0.00 43.93 4.20
1614 1638 3.966026 CTTCTGACGCCGACGACCC 62.966 68.421 0.00 0.00 43.93 4.46
1638 1665 0.672342 GGCTCACATCCATCCATTGC 59.328 55.000 0.00 0.00 0.00 3.56
1646 1673 0.679640 TCCATCCATTGCCGGTGAAC 60.680 55.000 1.90 0.00 0.00 3.18
1707 1734 2.610479 CGGCAGCATTCGGTGTATAGAT 60.610 50.000 0.00 0.00 42.79 1.98
1708 1735 3.366985 CGGCAGCATTCGGTGTATAGATA 60.367 47.826 0.00 0.00 42.79 1.98
1709 1736 4.177026 GGCAGCATTCGGTGTATAGATAG 58.823 47.826 0.00 0.00 42.79 2.08
1735 1765 9.573133 GATAAAATCTCATCCGTTGTTGATTTT 57.427 29.630 20.53 20.53 43.31 1.82
1784 1820 9.691362 ACAATACAAGTGAAAACATTCAATACC 57.309 29.630 0.00 0.00 32.04 2.73
1788 1824 7.581476 ACAAGTGAAAACATTCAATACCGTAG 58.419 34.615 0.00 0.00 32.04 3.51
1790 1826 8.714179 CAAGTGAAAACATTCAATACCGTAGTA 58.286 33.333 0.00 0.00 32.04 1.82
1794 1830 8.875803 TGAAAACATTCAATACCGTAGTACATC 58.124 33.333 0.38 0.00 0.00 3.06
1795 1831 8.780846 AAAACATTCAATACCGTAGTACATCA 57.219 30.769 0.38 0.00 0.00 3.07
1796 1832 8.958119 AAACATTCAATACCGTAGTACATCAT 57.042 30.769 0.38 0.00 0.00 2.45
1839 1875 5.069318 TGTTCATCTACAAACATGCTGGAA 58.931 37.500 0.00 0.00 30.73 3.53
1960 2020 1.017701 GGCCGTTACCAGTTTCCTCG 61.018 60.000 0.00 0.00 0.00 4.63
1981 2041 2.476519 GGTTCAAAACTTCAACGCGTCA 60.477 45.455 14.44 0.00 0.00 4.35
2034 2094 0.395311 TCACCGCCGGAGAAGATAGT 60.395 55.000 11.71 0.00 0.00 2.12
2035 2095 1.134007 TCACCGCCGGAGAAGATAGTA 60.134 52.381 11.71 0.00 0.00 1.82
2036 2096 1.267261 CACCGCCGGAGAAGATAGTAG 59.733 57.143 11.71 0.00 0.00 2.57
2039 2099 3.008813 ACCGCCGGAGAAGATAGTAGATA 59.991 47.826 11.71 0.00 0.00 1.98
2080 2140 4.864334 GCCAGCCATCTGTCCGGG 62.864 72.222 0.00 0.00 38.66 5.73
2180 2245 2.077627 TCTCGTCTCCTCTTCTGTTCG 58.922 52.381 0.00 0.00 0.00 3.95
2192 2257 5.407407 TCTTCTGTTCGCCTTCTCTTTAT 57.593 39.130 0.00 0.00 0.00 1.40
2221 2286 7.086230 TGTGAAAGTTAAAAGCGAAAGGTAA 57.914 32.000 0.00 0.00 43.76 2.85
2240 2324 1.671054 CAACCCGTCGTTGCCAGAT 60.671 57.895 0.27 0.00 45.16 2.90
2241 2325 0.390603 CAACCCGTCGTTGCCAGATA 60.391 55.000 0.27 0.00 45.16 1.98
2242 2326 0.108329 AACCCGTCGTTGCCAGATAG 60.108 55.000 0.00 0.00 31.79 2.08
2258 2342 6.782494 TGCCAGATAGTAGATGGTGATAAAGA 59.218 38.462 5.56 0.00 36.43 2.52
2266 2350 7.213678 AGTAGATGGTGATAAAGAGCTAAAGC 58.786 38.462 0.00 0.00 42.49 3.51
2278 2362 2.366916 GAGCTAAAGCCCATCTGCTCTA 59.633 50.000 0.00 0.00 41.80 2.43
2388 2486 4.994907 TCACACGCACTATGGTAGTATT 57.005 40.909 0.00 0.00 37.23 1.89
2394 2492 4.643334 ACGCACTATGGTAGTATTGTCTCA 59.357 41.667 0.00 0.00 37.23 3.27
2429 2527 8.975663 ACGCTCTATGGTAATATAGTATAGCA 57.024 34.615 0.00 0.00 32.10 3.49
2430 2528 8.838365 ACGCTCTATGGTAATATAGTATAGCAC 58.162 37.037 0.00 0.00 32.10 4.40
2431 2529 9.058174 CGCTCTATGGTAATATAGTATAGCACT 57.942 37.037 0.00 0.00 41.62 4.40
2434 2532 9.922477 TCTATGGTAATATAGTATAGCACTGCT 57.078 33.333 8.95 8.95 38.24 4.24
2435 2533 9.958234 CTATGGTAATATAGTATAGCACTGCTG 57.042 37.037 14.15 0.00 40.10 4.41
2436 2534 7.776618 TGGTAATATAGTATAGCACTGCTGT 57.223 36.000 14.15 9.71 40.10 4.40
2437 2535 8.873186 TGGTAATATAGTATAGCACTGCTGTA 57.127 34.615 14.15 8.62 40.10 2.74
2444 2542 1.790755 TAGCACTGCTGTACAAACGG 58.209 50.000 14.15 0.00 40.10 4.44
2445 2543 0.179056 AGCACTGCTGTACAAACGGT 60.179 50.000 1.67 0.27 37.57 4.83
2446 2544 0.041312 GCACTGCTGTACAAACGGTG 60.041 55.000 23.80 23.80 34.20 4.94
2447 2545 1.577468 CACTGCTGTACAAACGGTGA 58.423 50.000 23.80 0.00 34.20 4.02
2448 2546 1.937223 CACTGCTGTACAAACGGTGAA 59.063 47.619 23.80 0.00 34.20 3.18
2449 2547 2.353269 CACTGCTGTACAAACGGTGAAA 59.647 45.455 23.80 0.00 34.20 2.69
2450 2548 2.612212 ACTGCTGTACAAACGGTGAAAG 59.388 45.455 8.79 0.00 34.20 2.62
2451 2549 1.332375 TGCTGTACAAACGGTGAAAGC 59.668 47.619 0.00 0.00 34.20 3.51
2452 2550 1.332375 GCTGTACAAACGGTGAAAGCA 59.668 47.619 0.00 0.00 34.20 3.91
2453 2551 2.031157 GCTGTACAAACGGTGAAAGCAT 60.031 45.455 0.00 0.00 34.20 3.79
2454 2552 3.554524 CTGTACAAACGGTGAAAGCATG 58.445 45.455 0.00 0.00 0.00 4.06
2455 2553 2.292016 TGTACAAACGGTGAAAGCATGG 59.708 45.455 0.00 0.00 0.00 3.66
2456 2554 1.686355 ACAAACGGTGAAAGCATGGA 58.314 45.000 0.00 0.00 0.00 3.41
2457 2555 2.238521 ACAAACGGTGAAAGCATGGAT 58.761 42.857 0.00 0.00 0.00 3.41
2458 2556 2.030007 ACAAACGGTGAAAGCATGGATG 60.030 45.455 0.00 0.00 0.00 3.51
2467 2565 2.202932 GCATGGATGCGGTCGTCT 60.203 61.111 0.00 0.00 44.67 4.18
2468 2566 2.528743 GCATGGATGCGGTCGTCTG 61.529 63.158 0.00 0.00 44.67 3.51
2469 2567 1.141665 CATGGATGCGGTCGTCTGA 59.858 57.895 0.00 0.00 0.00 3.27
2470 2568 0.249615 CATGGATGCGGTCGTCTGAT 60.250 55.000 0.00 0.00 0.00 2.90
2471 2569 0.465705 ATGGATGCGGTCGTCTGATT 59.534 50.000 0.00 0.00 0.00 2.57
2472 2570 1.107945 TGGATGCGGTCGTCTGATTA 58.892 50.000 0.00 0.00 0.00 1.75
2473 2571 1.478916 TGGATGCGGTCGTCTGATTAA 59.521 47.619 0.00 0.00 0.00 1.40
2474 2572 2.128035 GGATGCGGTCGTCTGATTAAG 58.872 52.381 0.00 0.00 0.00 1.85
2475 2573 2.223735 GGATGCGGTCGTCTGATTAAGA 60.224 50.000 0.00 0.00 0.00 2.10
2476 2574 2.561733 TGCGGTCGTCTGATTAAGAG 57.438 50.000 0.00 0.00 34.84 2.85
2477 2575 1.201343 GCGGTCGTCTGATTAAGAGC 58.799 55.000 0.00 0.00 34.84 4.09
2478 2576 1.469251 GCGGTCGTCTGATTAAGAGCA 60.469 52.381 0.00 0.00 34.84 4.26
2479 2577 2.876091 CGGTCGTCTGATTAAGAGCAA 58.124 47.619 0.00 0.00 34.84 3.91
2480 2578 2.599082 CGGTCGTCTGATTAAGAGCAAC 59.401 50.000 0.00 0.00 34.84 4.17
2481 2579 3.673594 CGGTCGTCTGATTAAGAGCAACT 60.674 47.826 0.00 0.00 34.84 3.16
2482 2580 3.860536 GGTCGTCTGATTAAGAGCAACTC 59.139 47.826 0.00 0.00 34.84 3.01
2483 2581 3.860536 GTCGTCTGATTAAGAGCAACTCC 59.139 47.826 0.00 0.00 34.84 3.85
2484 2582 3.509967 TCGTCTGATTAAGAGCAACTCCA 59.490 43.478 0.00 0.00 34.84 3.86
2485 2583 4.021456 TCGTCTGATTAAGAGCAACTCCAA 60.021 41.667 0.00 0.00 34.84 3.53
2486 2584 4.092091 CGTCTGATTAAGAGCAACTCCAAC 59.908 45.833 0.00 0.00 34.84 3.77
2487 2585 4.092091 GTCTGATTAAGAGCAACTCCAACG 59.908 45.833 0.00 0.00 34.84 4.10
2488 2586 3.997021 CTGATTAAGAGCAACTCCAACGT 59.003 43.478 0.00 0.00 0.00 3.99
2489 2587 5.047590 TCTGATTAAGAGCAACTCCAACGTA 60.048 40.000 0.00 0.00 0.00 3.57
2490 2588 4.927425 TGATTAAGAGCAACTCCAACGTAC 59.073 41.667 0.00 0.00 0.00 3.67
2491 2589 2.165319 AAGAGCAACTCCAACGTACC 57.835 50.000 0.00 0.00 0.00 3.34
2492 2590 0.038526 AGAGCAACTCCAACGTACCG 60.039 55.000 0.00 0.00 0.00 4.02
2493 2591 0.038892 GAGCAACTCCAACGTACCGA 60.039 55.000 0.00 0.00 0.00 4.69
2494 2592 0.319297 AGCAACTCCAACGTACCGAC 60.319 55.000 0.00 0.00 0.00 4.79
2495 2593 0.598158 GCAACTCCAACGTACCGACA 60.598 55.000 0.00 0.00 0.00 4.35
2496 2594 1.134226 CAACTCCAACGTACCGACAC 58.866 55.000 0.00 0.00 0.00 3.67
2497 2595 0.746063 AACTCCAACGTACCGACACA 59.254 50.000 0.00 0.00 0.00 3.72
2498 2596 0.746063 ACTCCAACGTACCGACACAA 59.254 50.000 0.00 0.00 0.00 3.33
2499 2597 1.136695 ACTCCAACGTACCGACACAAA 59.863 47.619 0.00 0.00 0.00 2.83
2500 2598 1.523934 CTCCAACGTACCGACACAAAC 59.476 52.381 0.00 0.00 0.00 2.93
2501 2599 0.230260 CCAACGTACCGACACAAACG 59.770 55.000 0.00 0.00 40.99 3.60
2508 2606 2.474266 CGACACAAACGGATGGCG 59.526 61.111 0.00 0.00 41.73 5.69
2509 2607 2.314647 CGACACAAACGGATGGCGT 61.315 57.895 0.00 0.00 42.55 5.68
2510 2608 1.837538 CGACACAAACGGATGGCGTT 61.838 55.000 0.00 0.00 42.55 4.84
2511 2609 0.309612 GACACAAACGGATGGCGTTT 59.690 50.000 0.00 0.00 39.72 3.60
2512 2610 0.741915 ACACAAACGGATGGCGTTTT 59.258 45.000 0.00 0.00 37.45 2.43
2513 2611 1.127701 CACAAACGGATGGCGTTTTG 58.872 50.000 0.00 1.74 37.45 2.44
2514 2612 0.741915 ACAAACGGATGGCGTTTTGT 59.258 45.000 0.00 2.86 37.45 2.83
2515 2613 1.135333 ACAAACGGATGGCGTTTTGTT 59.865 42.857 0.00 0.00 37.45 2.83
2516 2614 1.784283 CAAACGGATGGCGTTTTGTTC 59.216 47.619 0.00 0.00 37.45 3.18
2517 2615 0.040781 AACGGATGGCGTTTTGTTCG 60.041 50.000 0.00 0.00 0.00 3.95
2518 2616 1.161563 ACGGATGGCGTTTTGTTCGT 61.162 50.000 0.00 0.00 0.00 3.85
2519 2617 0.040781 CGGATGGCGTTTTGTTCGTT 60.041 50.000 0.00 0.00 0.00 3.85
2520 2618 1.598430 CGGATGGCGTTTTGTTCGTTT 60.598 47.619 0.00 0.00 0.00 3.60
2521 2619 2.465855 GGATGGCGTTTTGTTCGTTTT 58.534 42.857 0.00 0.00 0.00 2.43
2522 2620 2.861335 GGATGGCGTTTTGTTCGTTTTT 59.139 40.909 0.00 0.00 0.00 1.94
2542 2640 3.728076 TTGTCCCTTTAGATCGATCGG 57.272 47.619 19.33 13.91 0.00 4.18
2543 2641 2.940158 TGTCCCTTTAGATCGATCGGA 58.060 47.619 19.33 15.92 0.00 4.55
2544 2642 2.621998 TGTCCCTTTAGATCGATCGGAC 59.378 50.000 28.51 28.51 39.01 4.79
2545 2643 1.878088 TCCCTTTAGATCGATCGGACG 59.122 52.381 19.33 9.61 0.00 4.79
2546 2644 1.068472 CCCTTTAGATCGATCGGACGG 60.068 57.143 19.33 16.87 0.00 4.79
2547 2645 1.878088 CCTTTAGATCGATCGGACGGA 59.122 52.381 19.33 0.00 0.00 4.69
2548 2646 2.350580 CCTTTAGATCGATCGGACGGAC 60.351 54.545 19.33 1.08 0.00 4.79
2549 2647 1.957668 TTAGATCGATCGGACGGACA 58.042 50.000 19.33 0.00 0.00 4.02
2550 2648 2.180432 TAGATCGATCGGACGGACAT 57.820 50.000 19.33 0.00 0.00 3.06
2551 2649 0.593618 AGATCGATCGGACGGACATG 59.406 55.000 19.33 0.00 0.00 3.21
2552 2650 0.311165 GATCGATCGGACGGACATGT 59.689 55.000 16.41 0.00 0.00 3.21
2553 2651 0.030773 ATCGATCGGACGGACATGTG 59.969 55.000 16.41 0.00 0.00 3.21
2554 2652 2.230940 CGATCGGACGGACATGTGC 61.231 63.158 1.15 4.73 0.00 4.57
2561 2659 3.951332 CGGACATGTGCGTTCACT 58.049 55.556 28.99 0.00 43.49 3.41
2562 2660 2.234613 CGGACATGTGCGTTCACTT 58.765 52.632 28.99 0.00 43.49 3.16
2563 2661 0.586319 CGGACATGTGCGTTCACTTT 59.414 50.000 28.99 0.00 43.49 2.66
2564 2662 1.002900 CGGACATGTGCGTTCACTTTT 60.003 47.619 28.99 0.00 43.49 2.27
2565 2663 2.650608 GGACATGTGCGTTCACTTTTC 58.349 47.619 1.15 0.00 43.49 2.29
2566 2664 2.032799 GGACATGTGCGTTCACTTTTCA 59.967 45.455 1.15 0.00 43.49 2.69
2567 2665 3.304659 GGACATGTGCGTTCACTTTTCAT 60.305 43.478 1.15 0.00 43.49 2.57
2568 2666 4.290155 GACATGTGCGTTCACTTTTCATT 58.710 39.130 1.15 0.00 43.49 2.57
2569 2667 4.681744 ACATGTGCGTTCACTTTTCATTT 58.318 34.783 0.00 0.00 43.49 2.32
2570 2668 5.108517 ACATGTGCGTTCACTTTTCATTTT 58.891 33.333 0.00 0.00 43.49 1.82
2571 2669 5.005586 ACATGTGCGTTCACTTTTCATTTTG 59.994 36.000 0.00 0.00 43.49 2.44
2572 2670 3.862267 TGTGCGTTCACTTTTCATTTTGG 59.138 39.130 0.00 0.00 43.49 3.28
2573 2671 3.245048 GTGCGTTCACTTTTCATTTTGGG 59.755 43.478 0.00 0.00 40.03 4.12
2574 2672 3.118956 TGCGTTCACTTTTCATTTTGGGT 60.119 39.130 0.00 0.00 0.00 4.51
2575 2673 3.489416 GCGTTCACTTTTCATTTTGGGTC 59.511 43.478 0.00 0.00 0.00 4.46
2576 2674 3.728718 CGTTCACTTTTCATTTTGGGTCG 59.271 43.478 0.00 0.00 0.00 4.79
2577 2675 4.048504 GTTCACTTTTCATTTTGGGTCGG 58.951 43.478 0.00 0.00 0.00 4.79
2578 2676 3.292460 TCACTTTTCATTTTGGGTCGGT 58.708 40.909 0.00 0.00 0.00 4.69
2579 2677 4.462133 TCACTTTTCATTTTGGGTCGGTA 58.538 39.130 0.00 0.00 0.00 4.02
2580 2678 4.517453 TCACTTTTCATTTTGGGTCGGTAG 59.483 41.667 0.00 0.00 0.00 3.18
2581 2679 4.517453 CACTTTTCATTTTGGGTCGGTAGA 59.483 41.667 0.00 0.00 0.00 2.59
2582 2680 5.183140 CACTTTTCATTTTGGGTCGGTAGAT 59.817 40.000 0.00 0.00 0.00 1.98
2583 2681 5.183140 ACTTTTCATTTTGGGTCGGTAGATG 59.817 40.000 0.00 0.00 0.00 2.90
2584 2682 3.992943 TCATTTTGGGTCGGTAGATGT 57.007 42.857 0.00 0.00 0.00 3.06
2585 2683 3.605634 TCATTTTGGGTCGGTAGATGTG 58.394 45.455 0.00 0.00 0.00 3.21
2586 2684 1.816074 TTTTGGGTCGGTAGATGTGC 58.184 50.000 0.00 0.00 0.00 4.57
2587 2685 0.035820 TTTGGGTCGGTAGATGTGCC 60.036 55.000 0.00 0.00 0.00 5.01
2588 2686 1.906105 TTGGGTCGGTAGATGTGCCC 61.906 60.000 0.00 0.00 36.73 5.36
2589 2687 2.106332 GGTCGGTAGATGTGCCCG 59.894 66.667 0.00 0.00 43.03 6.13
2591 2689 3.203442 TCGGTAGATGTGCCCGAC 58.797 61.111 1.97 0.00 45.20 4.79
2592 2690 2.278596 CGGTAGATGTGCCCGACG 60.279 66.667 0.00 0.00 44.41 5.12
2593 2691 2.106332 GGTAGATGTGCCCGACGG 59.894 66.667 6.99 6.99 0.00 4.79
2594 2692 2.420568 GGTAGATGTGCCCGACGGA 61.421 63.158 17.49 0.00 0.00 4.69
2595 2693 1.514087 GTAGATGTGCCCGACGGAA 59.486 57.895 17.49 0.00 0.00 4.30
2596 2694 0.527817 GTAGATGTGCCCGACGGAAG 60.528 60.000 17.49 0.00 0.00 3.46
2597 2695 1.672854 TAGATGTGCCCGACGGAAGG 61.673 60.000 17.49 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.228459 AAGGTTGGAAGGCCGAACC 60.228 57.895 16.83 16.83 41.62 3.62
11 12 0.536460 TGAAGGTTGGAAGGCCGAAC 60.536 55.000 0.00 0.00 35.26 3.95
12 13 0.183971 TTGAAGGTTGGAAGGCCGAA 59.816 50.000 0.00 0.00 36.79 4.30
13 14 0.183971 TTTGAAGGTTGGAAGGCCGA 59.816 50.000 0.00 0.00 36.79 5.54
14 15 0.313987 GTTTGAAGGTTGGAAGGCCG 59.686 55.000 0.00 0.00 36.79 6.13
15 16 1.408969 TGTTTGAAGGTTGGAAGGCC 58.591 50.000 0.00 0.00 0.00 5.19
16 17 4.321974 CCTTATGTTTGAAGGTTGGAAGGC 60.322 45.833 0.00 0.00 38.97 4.35
17 18 4.220602 CCCTTATGTTTGAAGGTTGGAAGG 59.779 45.833 1.03 0.00 41.76 3.46
18 19 4.832823 ACCCTTATGTTTGAAGGTTGGAAG 59.167 41.667 1.03 0.00 41.76 3.46
19 20 4.810345 ACCCTTATGTTTGAAGGTTGGAA 58.190 39.130 1.03 0.00 41.76 3.53
20 21 4.463050 ACCCTTATGTTTGAAGGTTGGA 57.537 40.909 1.03 0.00 41.76 3.53
21 22 5.538118 GAAACCCTTATGTTTGAAGGTTGG 58.462 41.667 0.00 0.00 41.76 3.77
22 23 5.009210 TCGAAACCCTTATGTTTGAAGGTTG 59.991 40.000 0.00 0.00 41.76 3.77
23 24 5.134661 TCGAAACCCTTATGTTTGAAGGTT 58.865 37.500 1.03 0.00 41.76 3.50
24 25 4.721132 TCGAAACCCTTATGTTTGAAGGT 58.279 39.130 1.03 0.00 41.76 3.50
25 26 4.760204 ACTCGAAACCCTTATGTTTGAAGG 59.240 41.667 0.00 0.00 42.79 3.46
26 27 5.238650 ACACTCGAAACCCTTATGTTTGAAG 59.761 40.000 0.00 0.00 38.51 3.02
27 28 5.008217 CACACTCGAAACCCTTATGTTTGAA 59.992 40.000 0.00 0.00 38.51 2.69
28 29 4.513692 CACACTCGAAACCCTTATGTTTGA 59.486 41.667 0.00 0.00 38.51 2.69
29 30 4.783242 CACACTCGAAACCCTTATGTTTG 58.217 43.478 0.00 0.00 38.51 2.93
30 31 3.252458 GCACACTCGAAACCCTTATGTTT 59.748 43.478 0.00 0.00 40.99 2.83
31 32 2.812011 GCACACTCGAAACCCTTATGTT 59.188 45.455 0.00 0.00 0.00 2.71
32 33 2.224426 TGCACACTCGAAACCCTTATGT 60.224 45.455 0.00 0.00 0.00 2.29
33 34 2.422597 TGCACACTCGAAACCCTTATG 58.577 47.619 0.00 0.00 0.00 1.90
34 35 2.851263 TGCACACTCGAAACCCTTAT 57.149 45.000 0.00 0.00 0.00 1.73
35 36 2.301870 AGATGCACACTCGAAACCCTTA 59.698 45.455 0.00 0.00 0.00 2.69
36 37 1.072331 AGATGCACACTCGAAACCCTT 59.928 47.619 0.00 0.00 0.00 3.95
37 38 0.687354 AGATGCACACTCGAAACCCT 59.313 50.000 0.00 0.00 0.00 4.34
38 39 1.464997 GAAGATGCACACTCGAAACCC 59.535 52.381 0.00 0.00 0.00 4.11
39 40 1.126846 CGAAGATGCACACTCGAAACC 59.873 52.381 7.22 0.00 0.00 3.27
40 41 1.126846 CCGAAGATGCACACTCGAAAC 59.873 52.381 13.14 0.00 0.00 2.78
41 42 1.270094 ACCGAAGATGCACACTCGAAA 60.270 47.619 13.14 0.00 0.00 3.46
42 43 0.317160 ACCGAAGATGCACACTCGAA 59.683 50.000 13.14 0.00 0.00 3.71
43 44 0.388520 CACCGAAGATGCACACTCGA 60.389 55.000 13.14 0.00 0.00 4.04
44 45 1.354337 CCACCGAAGATGCACACTCG 61.354 60.000 0.00 0.00 0.00 4.18
45 46 1.639298 GCCACCGAAGATGCACACTC 61.639 60.000 0.00 0.00 0.00 3.51
46 47 1.672356 GCCACCGAAGATGCACACT 60.672 57.895 0.00 0.00 0.00 3.55
47 48 2.690778 GGCCACCGAAGATGCACAC 61.691 63.158 0.00 0.00 0.00 3.82
48 49 2.359850 GGCCACCGAAGATGCACA 60.360 61.111 0.00 0.00 0.00 4.57
49 50 3.134127 GGGCCACCGAAGATGCAC 61.134 66.667 4.39 0.00 0.00 4.57
50 51 1.558167 TAAGGGCCACCGAAGATGCA 61.558 55.000 6.18 0.00 43.47 3.96
51 52 0.393808 TTAAGGGCCACCGAAGATGC 60.394 55.000 6.18 0.00 43.47 3.91
52 53 2.122783 TTTAAGGGCCACCGAAGATG 57.877 50.000 6.18 0.00 43.47 2.90
53 54 2.891191 TTTTAAGGGCCACCGAAGAT 57.109 45.000 6.18 0.00 43.47 2.40
54 55 2.660670 TTTTTAAGGGCCACCGAAGA 57.339 45.000 6.18 0.00 43.47 2.87
55 56 3.953712 AATTTTTAAGGGCCACCGAAG 57.046 42.857 6.18 0.00 43.47 3.79
56 57 4.691326 AAAATTTTTAAGGGCCACCGAA 57.309 36.364 6.18 0.00 43.47 4.30
57 58 4.321082 CGTAAAATTTTTAAGGGCCACCGA 60.321 41.667 9.06 0.00 43.47 4.69
58 59 3.921630 CGTAAAATTTTTAAGGGCCACCG 59.078 43.478 9.06 0.00 43.47 4.94
59 60 4.247258 CCGTAAAATTTTTAAGGGCCACC 58.753 43.478 20.01 0.00 0.00 4.61
60 61 4.247258 CCCGTAAAATTTTTAAGGGCCAC 58.753 43.478 28.48 8.62 36.99 5.01
61 62 3.902467 ACCCGTAAAATTTTTAAGGGCCA 59.098 39.130 34.27 4.06 44.30 5.36
62 63 4.540359 ACCCGTAAAATTTTTAAGGGCC 57.460 40.909 34.27 12.22 44.30 5.80
63 64 5.299148 ACAACCCGTAAAATTTTTAAGGGC 58.701 37.500 34.27 12.50 44.30 5.19
64 65 8.305317 TGATACAACCCGTAAAATTTTTAAGGG 58.695 33.333 33.41 33.41 45.42 3.95
65 66 9.131416 GTGATACAACCCGTAAAATTTTTAAGG 57.869 33.333 20.53 20.53 32.59 2.69
66 67 9.902196 AGTGATACAACCCGTAAAATTTTTAAG 57.098 29.630 9.06 5.65 32.59 1.85
69 70 9.602568 AAAAGTGATACAACCCGTAAAATTTTT 57.397 25.926 9.06 0.00 30.31 1.94
71 72 9.681692 GTAAAAGTGATACAACCCGTAAAATTT 57.318 29.630 0.00 0.00 32.59 1.82
72 73 8.016801 CGTAAAAGTGATACAACCCGTAAAATT 58.983 33.333 0.00 0.00 32.59 1.82
73 74 7.387397 TCGTAAAAGTGATACAACCCGTAAAAT 59.613 33.333 0.00 0.00 32.59 1.82
74 75 6.703607 TCGTAAAAGTGATACAACCCGTAAAA 59.296 34.615 0.00 0.00 32.59 1.52
75 76 6.219473 TCGTAAAAGTGATACAACCCGTAAA 58.781 36.000 0.00 0.00 32.59 2.01
76 77 5.777802 TCGTAAAAGTGATACAACCCGTAA 58.222 37.500 0.00 0.00 32.59 3.18
77 78 5.384063 TCGTAAAAGTGATACAACCCGTA 57.616 39.130 0.00 0.00 0.00 4.02
78 79 4.255833 TCGTAAAAGTGATACAACCCGT 57.744 40.909 0.00 0.00 0.00 5.28
79 80 5.789710 AATCGTAAAAGTGATACAACCCG 57.210 39.130 0.00 0.00 0.00 5.28
80 81 7.094933 ACAGAAATCGTAAAAGTGATACAACCC 60.095 37.037 0.00 0.00 0.00 4.11
81 82 7.803724 ACAGAAATCGTAAAAGTGATACAACC 58.196 34.615 0.00 0.00 0.00 3.77
82 83 9.314501 GAACAGAAATCGTAAAAGTGATACAAC 57.685 33.333 0.00 0.00 0.00 3.32
83 84 9.268268 AGAACAGAAATCGTAAAAGTGATACAA 57.732 29.630 0.00 0.00 0.00 2.41
84 85 8.708742 CAGAACAGAAATCGTAAAAGTGATACA 58.291 33.333 0.00 0.00 0.00 2.29
85 86 8.169268 CCAGAACAGAAATCGTAAAAGTGATAC 58.831 37.037 0.00 0.00 0.00 2.24
86 87 8.092068 TCCAGAACAGAAATCGTAAAAGTGATA 58.908 33.333 0.00 0.00 0.00 2.15
87 88 6.934645 TCCAGAACAGAAATCGTAAAAGTGAT 59.065 34.615 0.00 0.00 0.00 3.06
88 89 6.202188 GTCCAGAACAGAAATCGTAAAAGTGA 59.798 38.462 0.00 0.00 0.00 3.41
89 90 6.018262 TGTCCAGAACAGAAATCGTAAAAGTG 60.018 38.462 0.00 0.00 32.81 3.16
90 91 6.053005 TGTCCAGAACAGAAATCGTAAAAGT 58.947 36.000 0.00 0.00 32.81 2.66
91 92 6.539649 TGTCCAGAACAGAAATCGTAAAAG 57.460 37.500 0.00 0.00 32.81 2.27
92 93 7.504924 AATGTCCAGAACAGAAATCGTAAAA 57.495 32.000 0.00 0.00 42.37 1.52
93 94 7.504924 AAATGTCCAGAACAGAAATCGTAAA 57.495 32.000 0.00 0.00 42.37 2.01
94 95 7.504924 AAAATGTCCAGAACAGAAATCGTAA 57.495 32.000 0.00 0.00 42.37 3.18
95 96 7.504924 AAAAATGTCCAGAACAGAAATCGTA 57.495 32.000 0.00 0.00 42.37 3.43
96 97 6.391227 AAAAATGTCCAGAACAGAAATCGT 57.609 33.333 0.00 0.00 42.37 3.73
135 136 9.332502 GGTCAAACCCTTATAATTTTTGTGTTT 57.667 29.630 10.83 0.00 30.04 2.83
136 137 8.487028 TGGTCAAACCCTTATAATTTTTGTGTT 58.513 29.630 10.83 0.00 37.50 3.32
137 138 7.929245 GTGGTCAAACCCTTATAATTTTTGTGT 59.071 33.333 10.83 0.00 37.50 3.72
138 139 8.147704 AGTGGTCAAACCCTTATAATTTTTGTG 58.852 33.333 10.83 0.00 37.50 3.33
139 140 8.257602 AGTGGTCAAACCCTTATAATTTTTGT 57.742 30.769 10.83 0.00 37.50 2.83
145 146 9.847224 CTGTATAAGTGGTCAAACCCTTATAAT 57.153 33.333 18.46 7.12 40.92 1.28
146 147 8.269317 CCTGTATAAGTGGTCAAACCCTTATAA 58.731 37.037 18.46 12.60 40.92 0.98
147 148 7.147444 CCCTGTATAAGTGGTCAAACCCTTATA 60.147 40.741 15.59 15.59 39.81 0.98
148 149 6.353602 CCCTGTATAAGTGGTCAAACCCTTAT 60.354 42.308 16.85 16.85 40.96 1.73
149 150 5.045432 CCCTGTATAAGTGGTCAAACCCTTA 60.045 44.000 8.53 8.53 37.50 2.69
150 151 4.263771 CCCTGTATAAGTGGTCAAACCCTT 60.264 45.833 0.00 0.29 37.50 3.95
151 152 3.265995 CCCTGTATAAGTGGTCAAACCCT 59.734 47.826 0.00 0.00 37.50 4.34
152 153 3.009805 ACCCTGTATAAGTGGTCAAACCC 59.990 47.826 0.00 0.00 37.50 4.11
153 154 4.296621 ACCCTGTATAAGTGGTCAAACC 57.703 45.455 0.00 0.00 39.22 3.27
154 155 4.390909 CGAACCCTGTATAAGTGGTCAAAC 59.609 45.833 0.00 0.00 31.29 2.93
155 156 4.563993 CCGAACCCTGTATAAGTGGTCAAA 60.564 45.833 0.00 0.00 31.29 2.69
156 157 3.055675 CCGAACCCTGTATAAGTGGTCAA 60.056 47.826 0.00 0.00 31.29 3.18
157 158 2.498481 CCGAACCCTGTATAAGTGGTCA 59.502 50.000 0.00 0.00 31.29 4.02
158 159 2.498885 ACCGAACCCTGTATAAGTGGTC 59.501 50.000 0.00 0.00 31.29 4.02
159 160 2.543635 ACCGAACCCTGTATAAGTGGT 58.456 47.619 0.00 0.00 32.56 4.16
160 161 3.956199 TCTACCGAACCCTGTATAAGTGG 59.044 47.826 0.00 0.00 0.00 4.00
161 162 4.885907 TCTCTACCGAACCCTGTATAAGTG 59.114 45.833 0.00 0.00 0.00 3.16
162 163 5.121380 TCTCTACCGAACCCTGTATAAGT 57.879 43.478 0.00 0.00 0.00 2.24
163 164 5.593502 AGTTCTCTACCGAACCCTGTATAAG 59.406 44.000 0.00 0.00 43.27 1.73
164 165 5.513233 AGTTCTCTACCGAACCCTGTATAA 58.487 41.667 0.00 0.00 43.27 0.98
165 166 5.121380 AGTTCTCTACCGAACCCTGTATA 57.879 43.478 0.00 0.00 43.27 1.47
166 167 3.978610 AGTTCTCTACCGAACCCTGTAT 58.021 45.455 0.00 0.00 43.27 2.29
167 168 3.446442 AGTTCTCTACCGAACCCTGTA 57.554 47.619 0.00 0.00 43.27 2.74
168 169 2.305858 AGTTCTCTACCGAACCCTGT 57.694 50.000 0.00 0.00 43.27 4.00
169 170 4.015084 TCTTAGTTCTCTACCGAACCCTG 58.985 47.826 0.00 0.00 43.27 4.45
170 171 4.313020 TCTTAGTTCTCTACCGAACCCT 57.687 45.455 0.00 0.00 43.27 4.34
171 172 4.737055 GCATCTTAGTTCTCTACCGAACCC 60.737 50.000 0.00 0.00 43.27 4.11
172 173 4.098196 AGCATCTTAGTTCTCTACCGAACC 59.902 45.833 0.00 0.00 43.27 3.62
173 174 5.251601 AGCATCTTAGTTCTCTACCGAAC 57.748 43.478 0.00 0.00 42.73 3.95
174 175 5.502153 GAGCATCTTAGTTCTCTACCGAA 57.498 43.478 0.00 0.00 0.00 4.30
190 191 0.599558 TGTTTGGCAGCAAGAGCATC 59.400 50.000 0.00 0.00 45.49 3.91
199 200 3.670377 GGTCCCGTGTTTGGCAGC 61.670 66.667 0.00 0.00 0.00 5.25
201 202 4.939368 CGGGTCCCGTGTTTGGCA 62.939 66.667 23.02 0.00 42.73 4.92
211 212 2.352422 GTGGGGTTTACGGGTCCC 59.648 66.667 0.00 0.00 40.41 4.46
212 213 2.046988 CGTGGGGTTTACGGGTCC 60.047 66.667 0.00 0.00 37.86 4.46
346 358 0.102481 AAAGTGCGACCGCGATCTAT 59.898 50.000 8.23 0.00 45.51 1.98
439 451 1.736645 CGTTTGCCTGACGGACGAT 60.737 57.895 0.00 0.00 36.90 3.73
449 464 2.791868 GGTGGTTTGCCGTTTGCCT 61.792 57.895 0.00 0.00 40.16 4.75
499 514 5.845103 TCAATTTAGTCGCCGGATTGTATA 58.155 37.500 5.05 0.00 0.00 1.47
749 765 2.579738 GGTTGGAGAGACGAGGCC 59.420 66.667 0.00 0.00 0.00 5.19
750 766 2.579738 GGGTTGGAGAGACGAGGC 59.420 66.667 0.00 0.00 0.00 4.70
751 767 1.608717 CTGGGGTTGGAGAGACGAGG 61.609 65.000 0.00 0.00 0.00 4.63
752 768 0.900647 ACTGGGGTTGGAGAGACGAG 60.901 60.000 0.00 0.00 0.00 4.18
753 769 0.898789 GACTGGGGTTGGAGAGACGA 60.899 60.000 0.00 0.00 0.00 4.20
754 770 1.592223 GACTGGGGTTGGAGAGACG 59.408 63.158 0.00 0.00 0.00 4.18
755 771 0.836400 TGGACTGGGGTTGGAGAGAC 60.836 60.000 0.00 0.00 0.00 3.36
756 772 0.104672 TTGGACTGGGGTTGGAGAGA 60.105 55.000 0.00 0.00 0.00 3.10
757 773 0.036875 GTTGGACTGGGGTTGGAGAG 59.963 60.000 0.00 0.00 0.00 3.20
758 774 1.423794 GGTTGGACTGGGGTTGGAGA 61.424 60.000 0.00 0.00 0.00 3.71
759 775 1.074951 GGTTGGACTGGGGTTGGAG 59.925 63.158 0.00 0.00 0.00 3.86
760 776 1.698116 TGGTTGGACTGGGGTTGGA 60.698 57.895 0.00 0.00 0.00 3.53
761 777 1.228552 CTGGTTGGACTGGGGTTGG 60.229 63.158 0.00 0.00 0.00 3.77
762 778 0.184933 TTCTGGTTGGACTGGGGTTG 59.815 55.000 0.00 0.00 0.00 3.77
763 779 0.478507 CTTCTGGTTGGACTGGGGTT 59.521 55.000 0.00 0.00 0.00 4.11
764 780 0.401395 TCTTCTGGTTGGACTGGGGT 60.401 55.000 0.00 0.00 0.00 4.95
765 781 0.326264 CTCTTCTGGTTGGACTGGGG 59.674 60.000 0.00 0.00 0.00 4.96
766 782 1.002544 GACTCTTCTGGTTGGACTGGG 59.997 57.143 0.00 0.00 0.00 4.45
770 786 3.056465 CAGGTAGACTCTTCTGGTTGGAC 60.056 52.174 0.00 0.00 32.75 4.02
885 905 3.989698 ATTGGCTCGCTCGTGGACG 62.990 63.158 0.00 0.00 41.45 4.79
887 907 2.184322 GATTGGCTCGCTCGTGGA 59.816 61.111 0.00 0.00 0.00 4.02
888 908 2.892425 GGATTGGCTCGCTCGTGG 60.892 66.667 0.00 0.00 0.00 4.94
889 909 2.125552 TGGATTGGCTCGCTCGTG 60.126 61.111 0.00 0.00 0.00 4.35
890 910 2.125512 GTGGATTGGCTCGCTCGT 60.126 61.111 0.00 0.00 0.00 4.18
891 911 1.091771 ATTGTGGATTGGCTCGCTCG 61.092 55.000 0.00 0.00 0.00 5.03
893 913 0.749454 GGATTGTGGATTGGCTCGCT 60.749 55.000 0.00 0.00 0.00 4.93
895 915 0.734889 GTGGATTGTGGATTGGCTCG 59.265 55.000 0.00 0.00 0.00 5.03
897 917 2.537633 ATGTGGATTGTGGATTGGCT 57.462 45.000 0.00 0.00 0.00 4.75
898 918 2.033299 CGTATGTGGATTGTGGATTGGC 59.967 50.000 0.00 0.00 0.00 4.52
900 920 2.286359 CGCGTATGTGGATTGTGGATTG 60.286 50.000 0.00 0.00 0.00 2.67
902 922 1.134521 ACGCGTATGTGGATTGTGGAT 60.135 47.619 11.67 0.00 0.00 3.41
904 924 1.858458 CTACGCGTATGTGGATTGTGG 59.142 52.381 20.91 0.00 0.00 4.17
905 925 1.257936 GCTACGCGTATGTGGATTGTG 59.742 52.381 20.91 4.93 0.00 3.33
906 926 1.567504 GCTACGCGTATGTGGATTGT 58.432 50.000 20.91 0.00 0.00 2.71
987 1008 4.113815 TCCATCAGCCCCGCCTTG 62.114 66.667 0.00 0.00 0.00 3.61
1290 1311 4.465446 CGCCTCTCCTCCCCCTGA 62.465 72.222 0.00 0.00 0.00 3.86
1614 1638 4.552365 ATGGATGTGAGCCGGCCG 62.552 66.667 26.15 21.04 0.00 6.13
1616 1640 2.592861 GGATGGATGTGAGCCGGC 60.593 66.667 21.89 21.89 0.00 6.13
1638 1665 3.052082 CTGCTGGCAGTTCACCGG 61.052 66.667 17.16 0.00 39.10 5.28
1646 1673 2.633509 GCTTGGAACCTGCTGGCAG 61.634 63.158 10.94 10.94 43.26 4.85
1707 1734 9.613428 AATCAACAACGGATGAGATTTTATCTA 57.387 29.630 0.00 0.00 40.38 1.98
1708 1735 8.511604 AATCAACAACGGATGAGATTTTATCT 57.488 30.769 0.00 0.00 43.70 1.98
1709 1736 9.573133 AAAATCAACAACGGATGAGATTTTATC 57.427 29.630 21.49 0.00 44.88 1.75
1735 1765 8.169977 TGTACTAAGTACGAAGAAGGAAGAAA 57.830 34.615 4.73 0.00 41.41 2.52
1784 1820 6.636850 TGAATTCACGATGATGATGTACTACG 59.363 38.462 3.38 0.00 0.00 3.51
1788 1824 7.412137 TGATGAATTCACGATGATGATGTAC 57.588 36.000 11.07 0.00 0.00 2.90
1790 1826 6.930667 TTGATGAATTCACGATGATGATGT 57.069 33.333 11.07 0.00 32.84 3.06
1794 1830 6.956047 ACAGATTGATGAATTCACGATGATG 58.044 36.000 11.07 8.84 32.84 3.07
1795 1831 7.281549 TGAACAGATTGATGAATTCACGATGAT 59.718 33.333 11.07 1.03 32.84 2.45
1796 1832 6.594937 TGAACAGATTGATGAATTCACGATGA 59.405 34.615 11.07 0.00 32.84 2.92
1839 1875 3.616956 TCTTGATTGCAGAGGATTCGT 57.383 42.857 0.00 0.00 0.00 3.85
1855 1891 3.754955 TGTAGTTCGTACGAGCATCTTG 58.245 45.455 29.74 0.00 33.87 3.02
1960 2020 2.106418 GACGCGTTGAAGTTTTGAACC 58.894 47.619 15.53 0.00 0.00 3.62
1999 2059 4.760047 GACATCACACCGCCGCCT 62.760 66.667 0.00 0.00 0.00 5.52
2034 2094 4.590918 CGCAAGTCCTCCCTATCTATCTA 58.409 47.826 0.00 0.00 0.00 1.98
2035 2095 3.426615 CGCAAGTCCTCCCTATCTATCT 58.573 50.000 0.00 0.00 0.00 1.98
2036 2096 2.094442 GCGCAAGTCCTCCCTATCTATC 60.094 54.545 0.30 0.00 41.68 2.08
2039 2099 1.403687 GGCGCAAGTCCTCCCTATCT 61.404 60.000 10.83 0.00 41.68 1.98
2080 2140 2.325857 GCCGAACGCATCATCAGC 59.674 61.111 0.00 0.00 37.47 4.26
2180 2245 7.597386 ACTTTCACAATTGATAAAGAGAAGGC 58.403 34.615 28.07 0.00 0.00 4.35
2192 2257 7.221838 CCTTTCGCTTTTAACTTTCACAATTGA 59.778 33.333 13.59 0.00 0.00 2.57
2240 2324 8.361139 GCTTTAGCTCTTTATCACCATCTACTA 58.639 37.037 0.00 0.00 38.21 1.82
2241 2325 7.213678 GCTTTAGCTCTTTATCACCATCTACT 58.786 38.462 0.00 0.00 38.21 2.57
2242 2326 6.425417 GGCTTTAGCTCTTTATCACCATCTAC 59.575 42.308 0.00 0.00 41.70 2.59
2258 2342 1.211456 AGAGCAGATGGGCTTTAGCT 58.789 50.000 1.26 0.00 45.99 3.32
2266 2350 3.556633 CCAATAGCACTAGAGCAGATGGG 60.557 52.174 14.80 9.93 36.85 4.00
2278 2362 0.452987 CATGTTGCGCCAATAGCACT 59.547 50.000 4.18 0.00 45.10 4.40
2404 2502 8.838365 GTGCTATACTATATTACCATAGAGCGT 58.162 37.037 0.00 0.00 32.50 5.07
2408 2506 9.922477 AGCAGTGCTATACTATATTACCATAGA 57.078 33.333 18.11 0.00 37.60 1.98
2419 2517 5.977725 CGTTTGTACAGCAGTGCTATACTAT 59.022 40.000 28.63 9.92 39.07 2.12
2420 2518 5.337554 CGTTTGTACAGCAGTGCTATACTA 58.662 41.667 28.63 21.17 39.07 1.82
2421 2519 4.174009 CGTTTGTACAGCAGTGCTATACT 58.826 43.478 28.63 11.06 39.07 2.12
2422 2520 3.306166 CCGTTTGTACAGCAGTGCTATAC 59.694 47.826 23.75 23.75 38.81 1.47
2423 2521 3.056393 ACCGTTTGTACAGCAGTGCTATA 60.056 43.478 19.26 8.51 36.40 1.31
2424 2522 2.289444 ACCGTTTGTACAGCAGTGCTAT 60.289 45.455 19.26 9.83 36.40 2.97
2425 2523 1.069513 ACCGTTTGTACAGCAGTGCTA 59.930 47.619 19.26 0.00 36.40 3.49
2426 2524 0.179056 ACCGTTTGTACAGCAGTGCT 60.179 50.000 13.14 13.14 40.77 4.40
2427 2525 0.041312 CACCGTTTGTACAGCAGTGC 60.041 55.000 7.13 7.13 0.00 4.40
2428 2526 1.577468 TCACCGTTTGTACAGCAGTG 58.423 50.000 0.00 3.56 0.00 3.66
2429 2527 2.319136 TTCACCGTTTGTACAGCAGT 57.681 45.000 0.00 0.00 0.00 4.40
2430 2528 2.602217 GCTTTCACCGTTTGTACAGCAG 60.602 50.000 0.00 0.00 0.00 4.24
2431 2529 1.332375 GCTTTCACCGTTTGTACAGCA 59.668 47.619 0.00 0.00 0.00 4.41
2432 2530 1.332375 TGCTTTCACCGTTTGTACAGC 59.668 47.619 0.00 0.00 0.00 4.40
2433 2531 3.554524 CATGCTTTCACCGTTTGTACAG 58.445 45.455 0.00 0.00 0.00 2.74
2434 2532 2.292016 CCATGCTTTCACCGTTTGTACA 59.708 45.455 0.00 0.00 0.00 2.90
2435 2533 2.550606 TCCATGCTTTCACCGTTTGTAC 59.449 45.455 0.00 0.00 0.00 2.90
2436 2534 2.852449 TCCATGCTTTCACCGTTTGTA 58.148 42.857 0.00 0.00 0.00 2.41
2437 2535 1.686355 TCCATGCTTTCACCGTTTGT 58.314 45.000 0.00 0.00 0.00 2.83
2438 2536 2.598589 CATCCATGCTTTCACCGTTTG 58.401 47.619 0.00 0.00 0.00 2.93
2451 2549 0.249615 ATCAGACGACCGCATCCATG 60.250 55.000 0.00 0.00 0.00 3.66
2452 2550 0.465705 AATCAGACGACCGCATCCAT 59.534 50.000 0.00 0.00 0.00 3.41
2453 2551 1.107945 TAATCAGACGACCGCATCCA 58.892 50.000 0.00 0.00 0.00 3.41
2454 2552 2.128035 CTTAATCAGACGACCGCATCC 58.872 52.381 0.00 0.00 0.00 3.51
2455 2553 3.046390 CTCTTAATCAGACGACCGCATC 58.954 50.000 0.00 0.00 0.00 3.91
2456 2554 2.799917 GCTCTTAATCAGACGACCGCAT 60.800 50.000 0.00 0.00 0.00 4.73
2457 2555 1.469251 GCTCTTAATCAGACGACCGCA 60.469 52.381 0.00 0.00 0.00 5.69
2458 2556 1.201343 GCTCTTAATCAGACGACCGC 58.799 55.000 0.00 0.00 0.00 5.68
2459 2557 2.561733 TGCTCTTAATCAGACGACCG 57.438 50.000 0.00 0.00 0.00 4.79
2460 2558 3.851098 AGTTGCTCTTAATCAGACGACC 58.149 45.455 0.00 0.00 0.00 4.79
2461 2559 3.860536 GGAGTTGCTCTTAATCAGACGAC 59.139 47.826 0.00 0.00 0.00 4.34
2462 2560 3.509967 TGGAGTTGCTCTTAATCAGACGA 59.490 43.478 0.00 0.00 0.00 4.20
2463 2561 3.849911 TGGAGTTGCTCTTAATCAGACG 58.150 45.455 0.00 0.00 0.00 4.18
2464 2562 4.092091 CGTTGGAGTTGCTCTTAATCAGAC 59.908 45.833 0.00 0.00 0.00 3.51
2465 2563 4.245660 CGTTGGAGTTGCTCTTAATCAGA 58.754 43.478 0.00 0.00 0.00 3.27
2466 2564 3.997021 ACGTTGGAGTTGCTCTTAATCAG 59.003 43.478 0.00 0.00 0.00 2.90
2467 2565 4.002906 ACGTTGGAGTTGCTCTTAATCA 57.997 40.909 0.00 0.00 0.00 2.57
2468 2566 4.329256 GGTACGTTGGAGTTGCTCTTAATC 59.671 45.833 0.00 0.00 0.00 1.75
2469 2567 4.251268 GGTACGTTGGAGTTGCTCTTAAT 58.749 43.478 0.00 0.00 0.00 1.40
2470 2568 3.656559 GGTACGTTGGAGTTGCTCTTAA 58.343 45.455 0.00 0.00 0.00 1.85
2471 2569 3.308438 GGTACGTTGGAGTTGCTCTTA 57.692 47.619 0.00 0.00 0.00 2.10
2472 2570 2.165319 GGTACGTTGGAGTTGCTCTT 57.835 50.000 0.00 0.00 0.00 2.85
2473 2571 3.908737 GGTACGTTGGAGTTGCTCT 57.091 52.632 0.00 0.00 0.00 4.09
2487 2585 1.073177 CCATCCGTTTGTGTCGGTAC 58.927 55.000 4.36 0.00 46.86 3.34
2488 2586 0.671163 GCCATCCGTTTGTGTCGGTA 60.671 55.000 4.36 0.00 46.86 4.02
2489 2587 1.964373 GCCATCCGTTTGTGTCGGT 60.964 57.895 4.36 0.00 46.86 4.69
2491 2589 2.474266 CGCCATCCGTTTGTGTCG 59.526 61.111 0.00 0.00 0.00 4.35
2500 2598 0.040781 AACGAACAAAACGCCATCCG 60.041 50.000 0.00 0.00 44.21 4.18
2501 2599 2.128367 AAACGAACAAAACGCCATCC 57.872 45.000 0.00 0.00 0.00 3.51
2519 2617 4.873827 CCGATCGATCTAAAGGGACAAAAA 59.126 41.667 22.43 0.00 0.00 1.94
2520 2618 4.160814 TCCGATCGATCTAAAGGGACAAAA 59.839 41.667 22.43 0.00 0.00 2.44
2521 2619 3.702548 TCCGATCGATCTAAAGGGACAAA 59.297 43.478 22.43 0.00 0.00 2.83
2522 2620 3.067742 GTCCGATCGATCTAAAGGGACAA 59.932 47.826 29.46 7.84 41.54 3.18
2523 2621 2.621998 GTCCGATCGATCTAAAGGGACA 59.378 50.000 29.46 8.39 41.54 4.02
2524 2622 2.350580 CGTCCGATCGATCTAAAGGGAC 60.351 54.545 26.80 26.80 39.20 4.46
2525 2623 1.878088 CGTCCGATCGATCTAAAGGGA 59.122 52.381 22.43 17.44 0.00 4.20
2526 2624 1.068472 CCGTCCGATCGATCTAAAGGG 60.068 57.143 22.43 15.50 0.00 3.95
2527 2625 1.878088 TCCGTCCGATCGATCTAAAGG 59.122 52.381 22.43 19.32 0.00 3.11
2528 2626 2.289820 TGTCCGTCCGATCGATCTAAAG 59.710 50.000 22.43 12.12 0.00 1.85
2529 2627 2.291365 TGTCCGTCCGATCGATCTAAA 58.709 47.619 22.43 5.58 0.00 1.85
2530 2628 1.957668 TGTCCGTCCGATCGATCTAA 58.042 50.000 22.43 8.06 0.00 2.10
2531 2629 1.804748 CATGTCCGTCCGATCGATCTA 59.195 52.381 22.43 8.41 0.00 1.98
2532 2630 0.593618 CATGTCCGTCCGATCGATCT 59.406 55.000 22.43 0.00 0.00 2.75
2533 2631 0.311165 ACATGTCCGTCCGATCGATC 59.689 55.000 18.66 15.68 0.00 3.69
2534 2632 0.030773 CACATGTCCGTCCGATCGAT 59.969 55.000 18.66 0.00 0.00 3.59
2535 2633 1.431845 CACATGTCCGTCCGATCGA 59.568 57.895 18.66 0.00 0.00 3.59
2536 2634 2.230940 GCACATGTCCGTCCGATCG 61.231 63.158 8.51 8.51 0.00 3.69
2537 2635 2.230940 CGCACATGTCCGTCCGATC 61.231 63.158 0.00 0.00 0.00 3.69
2538 2636 2.202743 CGCACATGTCCGTCCGAT 60.203 61.111 0.00 0.00 0.00 4.18
2539 2637 3.215597 AACGCACATGTCCGTCCGA 62.216 57.895 16.42 0.00 36.56 4.55
2540 2638 2.726691 GAACGCACATGTCCGTCCG 61.727 63.158 16.42 6.56 36.56 4.79
2541 2639 1.666553 TGAACGCACATGTCCGTCC 60.667 57.895 16.42 2.64 36.56 4.79
2542 2640 1.491563 GTGAACGCACATGTCCGTC 59.508 57.895 16.42 9.75 44.51 4.79
2543 2641 3.637714 GTGAACGCACATGTCCGT 58.362 55.556 9.50 9.50 44.51 4.69
2551 2649 3.245048 CCCAAAATGAAAAGTGAACGCAC 59.755 43.478 0.00 0.00 45.49 5.34
2552 2650 3.118956 ACCCAAAATGAAAAGTGAACGCA 60.119 39.130 0.00 0.00 0.00 5.24
2553 2651 3.453424 ACCCAAAATGAAAAGTGAACGC 58.547 40.909 0.00 0.00 0.00 4.84
2554 2652 3.728718 CGACCCAAAATGAAAAGTGAACG 59.271 43.478 0.00 0.00 0.00 3.95
2555 2653 4.048504 CCGACCCAAAATGAAAAGTGAAC 58.951 43.478 0.00 0.00 0.00 3.18
2556 2654 3.702045 ACCGACCCAAAATGAAAAGTGAA 59.298 39.130 0.00 0.00 0.00 3.18
2557 2655 3.292460 ACCGACCCAAAATGAAAAGTGA 58.708 40.909 0.00 0.00 0.00 3.41
2558 2656 3.726291 ACCGACCCAAAATGAAAAGTG 57.274 42.857 0.00 0.00 0.00 3.16
2559 2657 4.721132 TCTACCGACCCAAAATGAAAAGT 58.279 39.130 0.00 0.00 0.00 2.66
2560 2658 5.183140 ACATCTACCGACCCAAAATGAAAAG 59.817 40.000 0.00 0.00 0.00 2.27
2561 2659 5.048364 CACATCTACCGACCCAAAATGAAAA 60.048 40.000 0.00 0.00 0.00 2.29
2562 2660 4.457603 CACATCTACCGACCCAAAATGAAA 59.542 41.667 0.00 0.00 0.00 2.69
2563 2661 4.006989 CACATCTACCGACCCAAAATGAA 58.993 43.478 0.00 0.00 0.00 2.57
2564 2662 3.605634 CACATCTACCGACCCAAAATGA 58.394 45.455 0.00 0.00 0.00 2.57
2565 2663 2.097466 GCACATCTACCGACCCAAAATG 59.903 50.000 0.00 0.00 0.00 2.32
2566 2664 2.365582 GCACATCTACCGACCCAAAAT 58.634 47.619 0.00 0.00 0.00 1.82
2567 2665 1.612199 GGCACATCTACCGACCCAAAA 60.612 52.381 0.00 0.00 0.00 2.44
2568 2666 0.035820 GGCACATCTACCGACCCAAA 60.036 55.000 0.00 0.00 0.00 3.28
2569 2667 1.600107 GGCACATCTACCGACCCAA 59.400 57.895 0.00 0.00 0.00 4.12
2570 2668 2.363975 GGGCACATCTACCGACCCA 61.364 63.158 0.00 0.00 37.30 4.51
2571 2669 2.504519 GGGCACATCTACCGACCC 59.495 66.667 0.00 0.00 0.00 4.46
2576 2674 1.952102 TTCCGTCGGGCACATCTACC 61.952 60.000 12.29 0.00 0.00 3.18
2577 2675 0.527817 CTTCCGTCGGGCACATCTAC 60.528 60.000 12.29 0.00 0.00 2.59
2578 2676 1.672854 CCTTCCGTCGGGCACATCTA 61.673 60.000 12.29 0.00 0.00 1.98
2579 2677 2.579201 CTTCCGTCGGGCACATCT 59.421 61.111 12.29 0.00 0.00 2.90
2580 2678 2.511600 CCTTCCGTCGGGCACATC 60.512 66.667 12.29 0.00 0.00 3.06
2581 2679 4.778143 GCCTTCCGTCGGGCACAT 62.778 66.667 12.29 0.00 46.84 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.