Multiple sequence alignment - TraesCS5D01G290600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G290600 chr5D 100.000 3433 0 0 1 3433 388588087 388591519 0.000000e+00 6340.0
1 TraesCS5D01G290600 chr5D 91.528 2408 160 21 346 2725 388330725 388333116 0.000000e+00 3277.0
2 TraesCS5D01G290600 chr5D 91.445 1356 93 18 936 2288 388423605 388422270 0.000000e+00 1840.0
3 TraesCS5D01G290600 chr5D 86.520 408 34 12 2752 3147 388335087 388335485 2.450000e-116 429.0
4 TraesCS5D01G290600 chr5D 83.513 279 20 12 3150 3420 388336129 388336389 1.590000e-58 237.0
5 TraesCS5D01G290600 chr6D 92.922 2529 146 19 231 2739 106891206 106893721 0.000000e+00 3648.0
6 TraesCS5D01G290600 chr6D 94.962 397 18 2 2752 3147 106895602 106895997 3.760000e-174 621.0
7 TraesCS5D01G290600 chr6D 96.970 33 0 1 749 781 52866674 52866643 2.000000e-03 54.7
8 TraesCS5D01G290600 chr5A 91.791 2546 170 22 233 2739 491521383 491523928 0.000000e+00 3507.0
9 TraesCS5D01G290600 chr5A 89.740 2427 181 29 334 2725 491368292 491370685 0.000000e+00 3040.0
10 TraesCS5D01G290600 chr5A 89.971 1705 132 19 936 2634 491319265 491317594 0.000000e+00 2165.0
11 TraesCS5D01G290600 chr5A 90.426 376 33 3 2773 3147 491531751 491532124 3.080000e-135 492.0
12 TraesCS5D01G290600 chr5A 88.917 397 33 9 2752 3147 491372203 491372589 2.400000e-131 479.0
13 TraesCS5D01G290600 chr5A 82.079 279 24 12 3150 3420 491373230 491373490 7.460000e-52 215.0
14 TraesCS5D01G290600 chr5A 84.821 112 13 4 122 231 564709586 564709695 3.620000e-20 110.0
15 TraesCS5D01G290600 chr6A 91.056 2538 165 31 231 2739 130404982 130407486 0.000000e+00 3373.0
16 TraesCS5D01G290600 chr6A 95.671 231 10 0 2752 2982 130408860 130409090 4.180000e-99 372.0
17 TraesCS5D01G290600 chr6A 97.619 42 1 0 2519 2560 516587555 516587596 4.750000e-09 73.1
18 TraesCS5D01G290600 chr5B 89.499 1438 96 26 231 1618 466972809 466974241 0.000000e+00 1768.0
19 TraesCS5D01G290600 chr5B 90.051 1166 86 14 1515 2661 466974232 466975386 0.000000e+00 1483.0
20 TraesCS5D01G290600 chr5B 93.750 96 5 1 136 231 400521440 400521346 3.570000e-30 143.0
21 TraesCS5D01G290600 chr4D 92.241 232 16 2 1 232 98925068 98925297 9.190000e-86 327.0
22 TraesCS5D01G290600 chr4B 87.018 285 21 5 2853 3133 32423544 32423272 1.200000e-79 307.0
23 TraesCS5D01G290600 chr4B 81.111 90 12 4 2436 2520 646102866 646102777 2.210000e-07 67.6
24 TraesCS5D01G290600 chr4B 95.000 40 1 1 2479 2518 646095047 646095009 1.030000e-05 62.1
25 TraesCS5D01G290600 chr3D 89.316 234 19 5 1 231 37153519 37153289 4.330000e-74 289.0
26 TraesCS5D01G290600 chr3D 84.896 192 24 4 254 440 605343352 605343543 4.520000e-44 189.0
27 TraesCS5D01G290600 chr3D 83.938 193 25 5 254 440 605440578 605440770 2.720000e-41 180.0
28 TraesCS5D01G290600 chr4A 86.517 267 15 7 2870 3131 581199869 581199619 1.210000e-69 274.0
29 TraesCS5D01G290600 chr7D 89.947 189 17 2 44 231 134449261 134449074 3.420000e-60 243.0
30 TraesCS5D01G290600 chr7D 84.211 76 9 1 3331 3403 91663540 91663615 1.710000e-08 71.3
31 TraesCS5D01G290600 chr7B 85.903 227 28 4 7 231 362881853 362881629 4.430000e-59 239.0
32 TraesCS5D01G290600 chr7B 84.021 194 22 6 254 440 187165727 187165918 9.790000e-41 178.0
33 TraesCS5D01G290600 chr6B 86.207 174 20 3 271 440 84923391 84923564 5.850000e-43 185.0
34 TraesCS5D01G290600 chr7A 78.788 231 35 10 12 230 496969284 496969512 3.570000e-30 143.0
35 TraesCS5D01G290600 chr2A 78.855 227 36 9 12 232 52458725 52458945 3.570000e-30 143.0
36 TraesCS5D01G290600 chr3A 90.323 93 7 2 141 231 49466297 49466389 1.670000e-23 121.0
37 TraesCS5D01G290600 chr2B 97.222 36 1 0 748 783 7448950 7448985 1.030000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G290600 chr5D 388588087 388591519 3432 False 6340.000000 6340 100.0000 1 3433 1 chr5D.!!$F1 3432
1 TraesCS5D01G290600 chr5D 388422270 388423605 1335 True 1840.000000 1840 91.4450 936 2288 1 chr5D.!!$R1 1352
2 TraesCS5D01G290600 chr5D 388330725 388336389 5664 False 1314.333333 3277 87.1870 346 3420 3 chr5D.!!$F2 3074
3 TraesCS5D01G290600 chr6D 106891206 106895997 4791 False 2134.500000 3648 93.9420 231 3147 2 chr6D.!!$F1 2916
4 TraesCS5D01G290600 chr5A 491521383 491523928 2545 False 3507.000000 3507 91.7910 233 2739 1 chr5A.!!$F1 2506
5 TraesCS5D01G290600 chr5A 491317594 491319265 1671 True 2165.000000 2165 89.9710 936 2634 1 chr5A.!!$R1 1698
6 TraesCS5D01G290600 chr5A 491368292 491373490 5198 False 1244.666667 3040 86.9120 334 3420 3 chr5A.!!$F4 3086
7 TraesCS5D01G290600 chr6A 130404982 130409090 4108 False 1872.500000 3373 93.3635 231 2982 2 chr6A.!!$F2 2751
8 TraesCS5D01G290600 chr5B 466972809 466975386 2577 False 1625.500000 1768 89.7750 231 2661 2 chr5B.!!$F1 2430

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.039978 CGCCATCAGGAGTACGCTAG 60.04 60.0 0.0 0.0 36.89 3.42 F
190 191 0.110486 TTTTCCCGCTGCTTTCTCCT 59.89 50.0 0.0 0.0 0.00 3.69 F
1335 1407 0.250338 GAAGTTCTTCCACCTGCCGT 60.25 55.0 0.0 0.0 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1160 1232 0.108377 CGTCCACGATTGGGATGACA 60.108 55.0 0.00 0.0 44.11 3.58 R
2165 2365 0.400213 ACTTCTTGAACATGGCCGGA 59.600 50.0 5.05 0.0 0.00 5.14 R
2892 5287 0.179222 GTTTCTTAGGCAGCGCGTTC 60.179 55.0 8.43 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.387716 AGGTACTGCACGCCATCA 58.612 55.556 0.00 0.00 37.18 3.07
18 19 1.219124 AGGTACTGCACGCCATCAG 59.781 57.895 0.00 0.00 37.18 2.90
19 20 1.815421 GGTACTGCACGCCATCAGG 60.815 63.158 0.00 0.00 34.76 3.86
20 21 1.218047 GTACTGCACGCCATCAGGA 59.782 57.895 0.00 0.00 36.89 3.86
21 22 0.807667 GTACTGCACGCCATCAGGAG 60.808 60.000 0.00 0.00 41.02 3.69
26 27 2.494918 ACGCCATCAGGAGTACGC 59.505 61.111 0.00 0.00 46.84 4.42
27 28 2.052690 ACGCCATCAGGAGTACGCT 61.053 57.895 0.00 0.00 46.84 5.07
28 29 0.750546 ACGCCATCAGGAGTACGCTA 60.751 55.000 0.00 0.00 46.84 4.26
29 30 0.039978 CGCCATCAGGAGTACGCTAG 60.040 60.000 0.00 0.00 36.89 3.42
30 31 1.319541 GCCATCAGGAGTACGCTAGA 58.680 55.000 0.00 0.00 36.89 2.43
31 32 1.268352 GCCATCAGGAGTACGCTAGAG 59.732 57.143 0.00 0.00 36.89 2.43
32 33 1.268352 CCATCAGGAGTACGCTAGAGC 59.732 57.143 0.00 0.00 36.89 4.09
33 34 2.226330 CATCAGGAGTACGCTAGAGCT 58.774 52.381 0.00 0.00 39.32 4.09
34 35 1.669604 TCAGGAGTACGCTAGAGCTG 58.330 55.000 0.00 0.00 39.32 4.24
35 36 1.065345 TCAGGAGTACGCTAGAGCTGT 60.065 52.381 0.00 0.00 39.32 4.40
36 37 1.064803 CAGGAGTACGCTAGAGCTGTG 59.935 57.143 0.00 0.00 39.32 3.66
37 38 0.382515 GGAGTACGCTAGAGCTGTGG 59.617 60.000 0.00 0.00 39.32 4.17
38 39 1.380524 GAGTACGCTAGAGCTGTGGA 58.619 55.000 0.00 0.00 39.32 4.02
39 40 1.332375 GAGTACGCTAGAGCTGTGGAG 59.668 57.143 0.00 0.00 39.32 3.86
40 41 1.065345 AGTACGCTAGAGCTGTGGAGA 60.065 52.381 4.82 0.00 39.32 3.71
41 42 1.064357 GTACGCTAGAGCTGTGGAGAC 59.936 57.143 4.82 0.00 39.32 3.36
42 43 0.322997 ACGCTAGAGCTGTGGAGACT 60.323 55.000 4.82 0.00 39.32 3.24
43 44 1.065345 ACGCTAGAGCTGTGGAGACTA 60.065 52.381 4.82 0.00 39.32 2.59
44 45 1.601903 CGCTAGAGCTGTGGAGACTAG 59.398 57.143 0.00 0.00 39.32 2.57
45 46 1.336755 GCTAGAGCTGTGGAGACTAGC 59.663 57.143 11.28 11.28 41.68 3.42
46 47 2.649190 CTAGAGCTGTGGAGACTAGCA 58.351 52.381 0.00 0.00 41.61 3.49
47 48 1.473258 AGAGCTGTGGAGACTAGCAG 58.527 55.000 0.00 0.00 41.61 4.24
48 49 0.459489 GAGCTGTGGAGACTAGCAGG 59.541 60.000 0.00 0.00 41.61 4.85
49 50 0.975040 AGCTGTGGAGACTAGCAGGG 60.975 60.000 0.00 0.00 41.61 4.45
50 51 1.965754 GCTGTGGAGACTAGCAGGGG 61.966 65.000 0.00 0.00 39.81 4.79
51 52 1.965754 CTGTGGAGACTAGCAGGGGC 61.966 65.000 0.00 0.00 41.61 5.80
68 69 4.671569 CGCGATGCCTAGAGCCCC 62.672 72.222 0.00 0.00 42.71 5.80
69 70 4.321966 GCGATGCCTAGAGCCCCC 62.322 72.222 0.00 0.00 42.71 5.40
70 71 2.525381 CGATGCCTAGAGCCCCCT 60.525 66.667 0.00 0.00 42.71 4.79
71 72 2.143419 CGATGCCTAGAGCCCCCTT 61.143 63.158 0.00 0.00 42.71 3.95
72 73 1.700042 CGATGCCTAGAGCCCCCTTT 61.700 60.000 0.00 0.00 42.71 3.11
73 74 0.553333 GATGCCTAGAGCCCCCTTTT 59.447 55.000 0.00 0.00 42.71 2.27
74 75 0.259938 ATGCCTAGAGCCCCCTTTTG 59.740 55.000 0.00 0.00 42.71 2.44
75 76 1.076705 GCCTAGAGCCCCCTTTTGG 60.077 63.158 0.00 0.00 35.58 3.28
89 90 3.815809 CCTTTTGGGGATAATGTAGCGA 58.184 45.455 0.00 0.00 35.46 4.93
90 91 3.815401 CCTTTTGGGGATAATGTAGCGAG 59.185 47.826 0.00 0.00 35.46 5.03
91 92 4.444306 CCTTTTGGGGATAATGTAGCGAGA 60.444 45.833 0.00 0.00 35.46 4.04
92 93 4.336889 TTTGGGGATAATGTAGCGAGAG 57.663 45.455 0.00 0.00 0.00 3.20
93 94 3.238788 TGGGGATAATGTAGCGAGAGA 57.761 47.619 0.00 0.00 0.00 3.10
94 95 3.779444 TGGGGATAATGTAGCGAGAGAT 58.221 45.455 0.00 0.00 0.00 2.75
95 96 4.160329 TGGGGATAATGTAGCGAGAGATT 58.840 43.478 0.00 0.00 0.00 2.40
96 97 5.330233 TGGGGATAATGTAGCGAGAGATTA 58.670 41.667 0.00 0.00 0.00 1.75
97 98 5.419155 TGGGGATAATGTAGCGAGAGATTAG 59.581 44.000 0.00 0.00 0.00 1.73
98 99 5.344884 GGGATAATGTAGCGAGAGATTAGC 58.655 45.833 0.00 0.00 0.00 3.09
99 100 5.344884 GGATAATGTAGCGAGAGATTAGCC 58.655 45.833 5.73 5.73 31.62 3.93
100 101 3.669251 AATGTAGCGAGAGATTAGCCC 57.331 47.619 0.00 0.00 0.00 5.19
101 102 2.366640 TGTAGCGAGAGATTAGCCCT 57.633 50.000 0.00 0.00 0.00 5.19
102 103 2.231529 TGTAGCGAGAGATTAGCCCTC 58.768 52.381 0.00 0.00 0.00 4.30
103 104 2.158593 TGTAGCGAGAGATTAGCCCTCT 60.159 50.000 0.00 0.00 43.16 3.69
104 105 1.327303 AGCGAGAGATTAGCCCTCTG 58.673 55.000 0.00 0.00 40.78 3.35
105 106 0.316841 GCGAGAGATTAGCCCTCTGG 59.683 60.000 0.00 0.00 40.78 3.86
106 107 1.698506 CGAGAGATTAGCCCTCTGGT 58.301 55.000 0.00 0.00 40.78 4.00
107 108 2.865079 CGAGAGATTAGCCCTCTGGTA 58.135 52.381 0.00 0.00 40.78 3.25
108 109 2.817258 CGAGAGATTAGCCCTCTGGTAG 59.183 54.545 0.00 0.00 40.78 3.18
109 110 3.749310 CGAGAGATTAGCCCTCTGGTAGT 60.749 52.174 0.00 0.00 40.78 2.73
110 111 4.219919 GAGAGATTAGCCCTCTGGTAGTT 58.780 47.826 0.00 0.00 40.78 2.24
111 112 4.625963 AGAGATTAGCCCTCTGGTAGTTT 58.374 43.478 0.00 0.00 39.36 2.66
112 113 5.778542 AGAGATTAGCCCTCTGGTAGTTTA 58.221 41.667 0.00 0.00 39.36 2.01
113 114 5.836358 AGAGATTAGCCCTCTGGTAGTTTAG 59.164 44.000 0.00 0.00 39.36 1.85
114 115 4.902448 AGATTAGCCCTCTGGTAGTTTAGG 59.098 45.833 0.00 0.00 0.00 2.69
115 116 1.205055 AGCCCTCTGGTAGTTTAGGC 58.795 55.000 0.00 0.00 39.25 3.93
116 117 0.180642 GCCCTCTGGTAGTTTAGGCC 59.819 60.000 0.00 0.00 32.68 5.19
117 118 1.580059 CCCTCTGGTAGTTTAGGCCA 58.420 55.000 5.01 0.00 0.00 5.36
118 119 1.209747 CCCTCTGGTAGTTTAGGCCAC 59.790 57.143 5.01 0.00 0.00 5.01
119 120 1.209747 CCTCTGGTAGTTTAGGCCACC 59.790 57.143 5.01 2.43 0.00 4.61
120 121 2.188817 CTCTGGTAGTTTAGGCCACCT 58.811 52.381 5.01 0.00 37.71 4.00
121 122 1.906574 TCTGGTAGTTTAGGCCACCTG 59.093 52.381 5.01 6.88 34.61 4.00
122 123 1.628846 CTGGTAGTTTAGGCCACCTGT 59.371 52.381 5.01 0.00 34.61 4.00
123 124 2.039879 CTGGTAGTTTAGGCCACCTGTT 59.960 50.000 5.01 0.00 34.61 3.16
124 125 2.444010 TGGTAGTTTAGGCCACCTGTTT 59.556 45.455 5.01 0.00 34.61 2.83
125 126 3.117436 TGGTAGTTTAGGCCACCTGTTTT 60.117 43.478 5.01 0.00 34.61 2.43
126 127 3.893200 GGTAGTTTAGGCCACCTGTTTTT 59.107 43.478 5.01 0.00 34.61 1.94
127 128 4.022589 GGTAGTTTAGGCCACCTGTTTTTC 60.023 45.833 5.01 0.00 34.61 2.29
128 129 3.910989 AGTTTAGGCCACCTGTTTTTCT 58.089 40.909 5.01 0.00 34.61 2.52
129 130 3.636764 AGTTTAGGCCACCTGTTTTTCTG 59.363 43.478 5.01 0.00 34.61 3.02
130 131 3.306472 TTAGGCCACCTGTTTTTCTGT 57.694 42.857 5.01 0.00 34.61 3.41
131 132 2.159179 AGGCCACCTGTTTTTCTGTT 57.841 45.000 5.01 0.00 29.57 3.16
132 133 3.306472 AGGCCACCTGTTTTTCTGTTA 57.694 42.857 5.01 0.00 29.57 2.41
133 134 3.844640 AGGCCACCTGTTTTTCTGTTAT 58.155 40.909 5.01 0.00 29.57 1.89
134 135 3.573967 AGGCCACCTGTTTTTCTGTTATG 59.426 43.478 5.01 0.00 29.57 1.90
135 136 3.320826 GGCCACCTGTTTTTCTGTTATGT 59.679 43.478 0.00 0.00 0.00 2.29
136 137 4.202212 GGCCACCTGTTTTTCTGTTATGTT 60.202 41.667 0.00 0.00 0.00 2.71
137 138 4.982295 GCCACCTGTTTTTCTGTTATGTTC 59.018 41.667 0.00 0.00 0.00 3.18
138 139 5.221244 GCCACCTGTTTTTCTGTTATGTTCT 60.221 40.000 0.00 0.00 0.00 3.01
139 140 6.438763 CCACCTGTTTTTCTGTTATGTTCTC 58.561 40.000 0.00 0.00 0.00 2.87
140 141 6.263168 CCACCTGTTTTTCTGTTATGTTCTCT 59.737 38.462 0.00 0.00 0.00 3.10
141 142 7.355778 CACCTGTTTTTCTGTTATGTTCTCTC 58.644 38.462 0.00 0.00 0.00 3.20
142 143 7.227512 CACCTGTTTTTCTGTTATGTTCTCTCT 59.772 37.037 0.00 0.00 0.00 3.10
143 144 7.775561 ACCTGTTTTTCTGTTATGTTCTCTCTT 59.224 33.333 0.00 0.00 0.00 2.85
144 145 8.072567 CCTGTTTTTCTGTTATGTTCTCTCTTG 58.927 37.037 0.00 0.00 0.00 3.02
145 146 8.506168 TGTTTTTCTGTTATGTTCTCTCTTGT 57.494 30.769 0.00 0.00 0.00 3.16
146 147 9.607988 TGTTTTTCTGTTATGTTCTCTCTTGTA 57.392 29.630 0.00 0.00 0.00 2.41
149 150 8.603242 TTTCTGTTATGTTCTCTCTTGTAACC 57.397 34.615 0.00 0.00 0.00 2.85
150 151 7.297936 TCTGTTATGTTCTCTCTTGTAACCA 57.702 36.000 0.00 0.00 0.00 3.67
151 152 7.907389 TCTGTTATGTTCTCTCTTGTAACCAT 58.093 34.615 0.00 0.00 0.00 3.55
152 153 7.819415 TCTGTTATGTTCTCTCTTGTAACCATG 59.181 37.037 0.00 0.00 0.00 3.66
153 154 7.676004 TGTTATGTTCTCTCTTGTAACCATGA 58.324 34.615 0.00 0.00 0.00 3.07
154 155 8.321353 TGTTATGTTCTCTCTTGTAACCATGAT 58.679 33.333 0.00 0.00 0.00 2.45
155 156 8.821894 GTTATGTTCTCTCTTGTAACCATGATC 58.178 37.037 0.00 0.00 0.00 2.92
156 157 6.358974 TGTTCTCTCTTGTAACCATGATCA 57.641 37.500 0.00 0.00 0.00 2.92
157 158 6.166279 TGTTCTCTCTTGTAACCATGATCAC 58.834 40.000 0.00 0.00 0.00 3.06
158 159 6.014242 TGTTCTCTCTTGTAACCATGATCACT 60.014 38.462 0.00 0.00 0.00 3.41
159 160 6.611613 TCTCTCTTGTAACCATGATCACTT 57.388 37.500 0.00 0.00 0.00 3.16
160 161 6.401394 TCTCTCTTGTAACCATGATCACTTG 58.599 40.000 0.00 0.00 0.00 3.16
161 162 6.211384 TCTCTCTTGTAACCATGATCACTTGA 59.789 38.462 0.00 0.00 0.00 3.02
162 163 6.950842 TCTCTTGTAACCATGATCACTTGAT 58.049 36.000 0.00 0.00 37.51 2.57
181 182 4.579127 CCCCCTATTTTCCCGCTG 57.421 61.111 0.00 0.00 0.00 5.18
182 183 1.828224 CCCCCTATTTTCCCGCTGC 60.828 63.158 0.00 0.00 0.00 5.25
183 184 1.227383 CCCCTATTTTCCCGCTGCT 59.773 57.895 0.00 0.00 0.00 4.24
184 185 0.395724 CCCCTATTTTCCCGCTGCTT 60.396 55.000 0.00 0.00 0.00 3.91
185 186 1.474330 CCCTATTTTCCCGCTGCTTT 58.526 50.000 0.00 0.00 0.00 3.51
186 187 1.405463 CCCTATTTTCCCGCTGCTTTC 59.595 52.381 0.00 0.00 0.00 2.62
187 188 2.369394 CCTATTTTCCCGCTGCTTTCT 58.631 47.619 0.00 0.00 0.00 2.52
188 189 2.356069 CCTATTTTCCCGCTGCTTTCTC 59.644 50.000 0.00 0.00 0.00 2.87
189 190 1.177401 ATTTTCCCGCTGCTTTCTCC 58.823 50.000 0.00 0.00 0.00 3.71
190 191 0.110486 TTTTCCCGCTGCTTTCTCCT 59.890 50.000 0.00 0.00 0.00 3.69
191 192 0.981183 TTTCCCGCTGCTTTCTCCTA 59.019 50.000 0.00 0.00 0.00 2.94
192 193 0.981183 TTCCCGCTGCTTTCTCCTAA 59.019 50.000 0.00 0.00 0.00 2.69
193 194 0.981183 TCCCGCTGCTTTCTCCTAAA 59.019 50.000 0.00 0.00 0.00 1.85
194 195 1.559682 TCCCGCTGCTTTCTCCTAAAT 59.440 47.619 0.00 0.00 0.00 1.40
195 196 1.943340 CCCGCTGCTTTCTCCTAAATC 59.057 52.381 0.00 0.00 0.00 2.17
196 197 2.632377 CCGCTGCTTTCTCCTAAATCA 58.368 47.619 0.00 0.00 0.00 2.57
197 198 3.009723 CCGCTGCTTTCTCCTAAATCAA 58.990 45.455 0.00 0.00 0.00 2.57
198 199 3.629398 CCGCTGCTTTCTCCTAAATCAAT 59.371 43.478 0.00 0.00 0.00 2.57
199 200 4.497006 CCGCTGCTTTCTCCTAAATCAATG 60.497 45.833 0.00 0.00 0.00 2.82
200 201 4.333649 CGCTGCTTTCTCCTAAATCAATGA 59.666 41.667 0.00 0.00 0.00 2.57
201 202 5.163723 CGCTGCTTTCTCCTAAATCAATGAA 60.164 40.000 0.00 0.00 0.00 2.57
202 203 6.264088 GCTGCTTTCTCCTAAATCAATGAAG 58.736 40.000 0.00 0.00 0.00 3.02
203 204 6.199937 TGCTTTCTCCTAAATCAATGAAGC 57.800 37.500 0.00 0.00 0.00 3.86
204 205 5.126061 TGCTTTCTCCTAAATCAATGAAGCC 59.874 40.000 0.00 0.00 0.00 4.35
205 206 5.731686 GCTTTCTCCTAAATCAATGAAGCCG 60.732 44.000 0.00 0.00 0.00 5.52
206 207 3.808728 TCTCCTAAATCAATGAAGCCGG 58.191 45.455 0.00 0.00 0.00 6.13
207 208 3.199946 TCTCCTAAATCAATGAAGCCGGT 59.800 43.478 1.90 0.00 0.00 5.28
208 209 3.947834 CTCCTAAATCAATGAAGCCGGTT 59.052 43.478 1.90 0.00 0.00 4.44
209 210 5.104693 TCTCCTAAATCAATGAAGCCGGTTA 60.105 40.000 1.90 0.00 0.00 2.85
210 211 5.690865 TCCTAAATCAATGAAGCCGGTTAT 58.309 37.500 1.90 0.00 0.00 1.89
211 212 5.763204 TCCTAAATCAATGAAGCCGGTTATC 59.237 40.000 1.90 0.00 0.00 1.75
212 213 4.918810 AAATCAATGAAGCCGGTTATCC 57.081 40.909 1.90 0.00 0.00 2.59
213 214 2.341846 TCAATGAAGCCGGTTATCCC 57.658 50.000 1.90 0.00 0.00 3.85
227 228 5.907866 GGTTATCCCGGATCTTTCAAAAA 57.092 39.130 0.73 0.00 0.00 1.94
256 257 8.736244 ACGTATGTCAACTAGGCAATTTTAATT 58.264 29.630 0.00 0.00 34.09 1.40
398 405 9.842775 CTATGCATTATGAAGATGGTATGGTAT 57.157 33.333 3.54 0.00 0.00 2.73
467 474 4.205065 CCGTAGTGGGTGGTATAAAACA 57.795 45.455 0.00 0.00 0.00 2.83
515 525 3.459598 CCCTCCTCCCACTATTGATTTCA 59.540 47.826 0.00 0.00 0.00 2.69
568 584 1.687563 AAAAACACCTCAACCTCCCG 58.312 50.000 0.00 0.00 0.00 5.14
708 774 3.637229 TCTGTTCCACTCTTTCTTCGTCT 59.363 43.478 0.00 0.00 0.00 4.18
858 924 2.352821 CGACATGGGTGGACGGGTA 61.353 63.158 0.00 0.00 0.00 3.69
879 945 7.575909 CGGGTAAGATCTGTTGGATGTAGATAG 60.576 44.444 0.00 0.00 34.33 2.08
939 1009 7.733047 TGGCCTCCAAATACTAGATAGATAACA 59.267 37.037 3.32 0.00 0.00 2.41
968 1038 0.464036 CCGCACACCTGAAGCCTATA 59.536 55.000 0.00 0.00 0.00 1.31
969 1039 1.070758 CCGCACACCTGAAGCCTATAT 59.929 52.381 0.00 0.00 0.00 0.86
975 1045 7.142021 CGCACACCTGAAGCCTATATATATAG 58.858 42.308 19.15 19.15 36.32 1.31
1025 1097 8.532819 CACTTGGTTTAGAAGACCTATTCTAGT 58.467 37.037 0.00 0.00 41.53 2.57
1052 1124 1.344953 TGGTTCATCGGGATCAGGGG 61.345 60.000 0.00 0.00 0.00 4.79
1056 1128 0.264657 TCATCGGGATCAGGGGAAGA 59.735 55.000 0.00 0.00 0.00 2.87
1066 1138 1.229951 AGGGGAAGATGGTGCAGGA 60.230 57.895 0.00 0.00 0.00 3.86
1135 1207 2.363795 TGAGGAGAACCGGCCGAT 60.364 61.111 30.73 16.01 41.83 4.18
1151 1223 2.433145 ATCACCGTCGCACAGCAG 60.433 61.111 0.00 0.00 0.00 4.24
1160 1232 3.300765 GCACAGCAGGCCAAGCTT 61.301 61.111 18.90 8.97 41.14 3.74
1169 1241 1.304381 GGCCAAGCTTGTCATCCCA 60.304 57.895 24.35 0.00 0.00 4.37
1278 1350 3.726144 TGACCGGCCATGGCATGA 61.726 61.111 36.56 14.29 44.11 3.07
1335 1407 0.250338 GAAGTTCTTCCACCTGCCGT 60.250 55.000 0.00 0.00 0.00 5.68
1355 1427 1.722034 TGGAGGAGAAGCTGAAGTGT 58.278 50.000 0.00 0.00 0.00 3.55
1612 1790 2.702478 CTGCAGGGATCTCCTACATGAA 59.298 50.000 5.57 0.00 46.12 2.57
1639 1817 2.241176 CCTAGAGAGTGGGAGAGTGACT 59.759 54.545 0.00 0.00 0.00 3.41
1670 1848 0.322648 GAAGGCCATGGCAAAGCTTT 59.677 50.000 36.56 19.62 44.11 3.51
1944 2122 4.991056 GGAGGTATGCATATACACACACAG 59.009 45.833 10.16 0.00 40.77 3.66
1948 2126 7.561251 AGGTATGCATATACACACACAGTTAA 58.439 34.615 10.16 0.00 40.77 2.01
1949 2127 7.710907 AGGTATGCATATACACACACAGTTAAG 59.289 37.037 10.16 0.00 40.77 1.85
1952 2130 5.872617 TGCATATACACACACAGTTAAGGAC 59.127 40.000 0.00 0.00 0.00 3.85
1953 2131 6.106673 GCATATACACACACAGTTAAGGACT 58.893 40.000 0.00 0.00 39.89 3.85
1954 2132 6.594159 GCATATACACACACAGTTAAGGACTT 59.406 38.462 0.00 0.00 36.10 3.01
1955 2133 7.201530 GCATATACACACACAGTTAAGGACTTC 60.202 40.741 0.00 0.00 36.10 3.01
1956 2134 4.755266 ACACACACAGTTAAGGACTTCT 57.245 40.909 0.00 0.00 36.10 2.85
1957 2135 5.864418 ACACACACAGTTAAGGACTTCTA 57.136 39.130 0.00 0.00 36.10 2.10
1958 2136 5.598769 ACACACACAGTTAAGGACTTCTAC 58.401 41.667 0.00 0.00 36.10 2.59
1959 2137 5.128171 ACACACACAGTTAAGGACTTCTACA 59.872 40.000 0.00 0.00 36.10 2.74
1960 2138 6.046593 CACACACAGTTAAGGACTTCTACAA 58.953 40.000 0.00 0.00 36.10 2.41
1961 2139 6.706270 CACACACAGTTAAGGACTTCTACAAT 59.294 38.462 0.00 0.00 36.10 2.71
1962 2140 6.706270 ACACACAGTTAAGGACTTCTACAATG 59.294 38.462 0.00 0.00 36.10 2.82
1963 2141 6.147821 CACACAGTTAAGGACTTCTACAATGG 59.852 42.308 0.00 0.00 36.10 3.16
1964 2142 6.042781 ACACAGTTAAGGACTTCTACAATGGA 59.957 38.462 0.00 0.00 36.10 3.41
1965 2143 6.369065 CACAGTTAAGGACTTCTACAATGGAC 59.631 42.308 0.00 0.00 36.10 4.02
1966 2144 6.042781 ACAGTTAAGGACTTCTACAATGGACA 59.957 38.462 0.00 0.00 36.10 4.02
1967 2145 6.934645 CAGTTAAGGACTTCTACAATGGACAA 59.065 38.462 0.00 0.00 36.10 3.18
1968 2146 7.444183 CAGTTAAGGACTTCTACAATGGACAAA 59.556 37.037 0.00 0.00 36.10 2.83
1969 2147 8.164070 AGTTAAGGACTTCTACAATGGACAAAT 58.836 33.333 0.00 0.00 33.92 2.32
1970 2148 9.444600 GTTAAGGACTTCTACAATGGACAAATA 57.555 33.333 0.00 0.00 0.00 1.40
2039 2239 3.534554 ACAGATCGTCAGCAATGCAATA 58.465 40.909 8.35 0.00 0.00 1.90
2087 2287 2.676822 AGCGCCGACAAGGAGAGA 60.677 61.111 2.29 0.00 43.02 3.10
2117 2317 1.405526 GCGATGTTCTACCAGCCAGAA 60.406 52.381 0.00 0.00 0.00 3.02
2282 2482 0.250640 GGATCAATGCTGAGGCCGAT 60.251 55.000 0.00 0.00 34.23 4.18
2365 2565 1.487976 GCATGATGTTCCTCTCTCCCA 59.512 52.381 0.00 0.00 0.00 4.37
2422 2622 6.237313 TGTACTTCGTATATGATCACCTCG 57.763 41.667 0.00 1.24 0.00 4.63
2438 2638 9.573166 TGATCACCTCGATGGAATAAAATAAAT 57.427 29.630 7.76 0.00 39.71 1.40
2506 2707 7.803189 CACTTTAGTACTAAAACTTGTGGCATG 59.197 37.037 24.46 13.08 34.95 4.06
2750 2964 9.720769 AAATTATGGTAGAGGTTTATATCACCG 57.279 33.333 0.00 0.00 39.56 4.94
2862 5248 5.339990 ACATTATGCAAAACATTAGCGGAC 58.660 37.500 0.00 0.00 40.38 4.79
2892 5287 3.191669 TCTGTGTGGACAAACTACAACG 58.808 45.455 0.00 0.00 41.36 4.10
2933 5328 4.653801 ACTACCAAAACCATGGAGCTTTTT 59.346 37.500 21.47 11.83 43.54 1.94
3002 5399 3.509967 TGACTACATCCTCAGCGAGAAAA 59.490 43.478 7.07 0.00 0.00 2.29
3027 5424 2.365617 TCTCCTTTTGTTGAGACTCGCT 59.634 45.455 0.00 0.00 32.84 4.93
3089 5486 6.211384 TCTTCATCATACTCAAGACCAAGTCA 59.789 38.462 0.00 0.00 34.60 3.41
3090 5487 5.970592 TCATCATACTCAAGACCAAGTCAG 58.029 41.667 0.00 0.00 34.60 3.51
3091 5488 5.716703 TCATCATACTCAAGACCAAGTCAGA 59.283 40.000 0.00 0.00 34.60 3.27
3092 5489 5.651387 TCATACTCAAGACCAAGTCAGAG 57.349 43.478 12.71 12.71 40.34 3.35
3093 5490 5.080337 TCATACTCAAGACCAAGTCAGAGT 58.920 41.667 19.66 19.66 45.17 3.24
3094 5491 3.742433 ACTCAAGACCAAGTCAGAGTG 57.258 47.619 16.86 3.06 43.28 3.51
3095 5492 3.034635 ACTCAAGACCAAGTCAGAGTGT 58.965 45.455 16.86 3.73 43.28 3.55
3147 5544 7.383687 GGTGGCTAGTACATACAAATATAGCA 58.616 38.462 0.00 0.00 36.69 3.49
3149 5546 7.870954 GTGGCTAGTACATACAAATATAGCACA 59.129 37.037 0.00 0.00 36.69 4.57
3150 5547 8.425703 TGGCTAGTACATACAAATATAGCACAA 58.574 33.333 0.00 0.00 36.69 3.33
3151 5548 9.436957 GGCTAGTACATACAAATATAGCACAAT 57.563 33.333 0.00 0.00 36.69 2.71
3193 6232 1.867233 ACTAGAACAAGCACAACAGCG 59.133 47.619 0.00 0.00 40.15 5.18
3207 6246 1.884464 CAGCGCACACACACACTCT 60.884 57.895 11.47 0.00 0.00 3.24
3208 6247 1.592669 AGCGCACACACACACTCTC 60.593 57.895 11.47 0.00 0.00 3.20
3210 6249 1.068083 CGCACACACACACTCTCCT 59.932 57.895 0.00 0.00 0.00 3.69
3211 6250 1.217585 CGCACACACACACTCTCCTG 61.218 60.000 0.00 0.00 0.00 3.86
3212 6251 0.882042 GCACACACACACTCTCCTGG 60.882 60.000 0.00 0.00 0.00 4.45
3215 6254 1.139058 ACACACACACTCTCCTGGTTC 59.861 52.381 0.00 0.00 0.00 3.62
3217 6256 1.837439 ACACACACTCTCCTGGTTCAA 59.163 47.619 0.00 0.00 0.00 2.69
3219 6258 2.103094 CACACACTCTCCTGGTTCAAGA 59.897 50.000 0.00 0.00 0.00 3.02
3220 6259 2.771943 ACACACTCTCCTGGTTCAAGAA 59.228 45.455 0.00 0.00 0.00 2.52
3222 6261 3.041946 ACACTCTCCTGGTTCAAGAACT 58.958 45.455 12.22 0.00 40.94 3.01
3223 6262 3.456277 ACACTCTCCTGGTTCAAGAACTT 59.544 43.478 12.22 0.00 40.94 2.66
3224 6263 3.812053 CACTCTCCTGGTTCAAGAACTTG 59.188 47.826 12.22 8.09 40.94 3.16
3225 6264 3.711704 ACTCTCCTGGTTCAAGAACTTGA 59.288 43.478 12.40 12.40 46.72 3.02
3238 6277 7.129109 TCAAGAACTTGACGATTTTATGACC 57.871 36.000 12.40 0.00 43.90 4.02
3239 6278 6.708502 TCAAGAACTTGACGATTTTATGACCA 59.291 34.615 12.40 0.00 43.90 4.02
3240 6279 7.390440 TCAAGAACTTGACGATTTTATGACCAT 59.610 33.333 12.40 0.00 43.90 3.55
3260 6299 4.457257 CCATTTCTTCTCCTGGTTTCTGAC 59.543 45.833 0.00 0.00 0.00 3.51
3262 6301 3.753294 TCTTCTCCTGGTTTCTGACAC 57.247 47.619 0.00 0.00 0.00 3.67
3265 6304 5.087323 TCTTCTCCTGGTTTCTGACACTAT 58.913 41.667 0.00 0.00 0.00 2.12
3267 6306 6.378564 TCTTCTCCTGGTTTCTGACACTATAG 59.621 42.308 0.00 0.00 0.00 1.31
3287 6340 2.103094 AGCTTGATATGCCACGCTAAGA 59.897 45.455 0.00 0.00 39.44 2.10
3291 6344 3.867857 TGATATGCCACGCTAAGAAACA 58.132 40.909 0.00 0.00 0.00 2.83
3297 6350 3.187637 TGCCACGCTAAGAAACATACAAC 59.812 43.478 0.00 0.00 0.00 3.32
3298 6351 3.435671 GCCACGCTAAGAAACATACAACT 59.564 43.478 0.00 0.00 0.00 3.16
3299 6352 4.669197 GCCACGCTAAGAAACATACAACTG 60.669 45.833 0.00 0.00 0.00 3.16
3300 6353 4.688879 CCACGCTAAGAAACATACAACTGA 59.311 41.667 0.00 0.00 0.00 3.41
3301 6354 5.389516 CCACGCTAAGAAACATACAACTGAC 60.390 44.000 0.00 0.00 0.00 3.51
3302 6355 5.176774 CACGCTAAGAAACATACAACTGACA 59.823 40.000 0.00 0.00 0.00 3.58
3303 6356 5.176958 ACGCTAAGAAACATACAACTGACAC 59.823 40.000 0.00 0.00 0.00 3.67
3315 6368 4.734917 ACAACTGACACTTAGCGAGATAC 58.265 43.478 0.00 0.00 0.00 2.24
3320 6373 5.593095 ACTGACACTTAGCGAGATACCATAA 59.407 40.000 0.00 0.00 0.00 1.90
3372 6425 7.333672 ACATAGGATAAGACTCAAAACGGAAAC 59.666 37.037 0.00 0.00 0.00 2.78
3403 6456 7.147672 ACCAAAAGATCAAACTGAACTTCCATT 60.148 33.333 0.00 0.00 38.33 3.16
3408 6461 7.000472 AGATCAAACTGAACTTCCATTCTTCA 59.000 34.615 0.00 0.00 0.00 3.02
3409 6462 6.624352 TCAAACTGAACTTCCATTCTTCAG 57.376 37.500 5.31 5.31 44.37 3.02
3420 6473 2.854777 CCATTCTTCAGCGACTTACTCG 59.145 50.000 0.00 0.00 45.97 4.18
3421 6474 3.427638 CCATTCTTCAGCGACTTACTCGA 60.428 47.826 0.00 0.00 46.14 4.04
3422 6475 3.473093 TTCTTCAGCGACTTACTCGAG 57.527 47.619 11.84 11.84 46.14 4.04
3423 6476 2.696506 TCTTCAGCGACTTACTCGAGA 58.303 47.619 21.68 0.00 46.14 4.04
3424 6477 3.271729 TCTTCAGCGACTTACTCGAGAT 58.728 45.455 21.68 6.08 46.14 2.75
3425 6478 4.439968 TCTTCAGCGACTTACTCGAGATA 58.560 43.478 21.68 5.00 46.14 1.98
3426 6479 4.270566 TCTTCAGCGACTTACTCGAGATAC 59.729 45.833 21.68 4.76 46.14 2.24
3427 6480 3.528532 TCAGCGACTTACTCGAGATACA 58.471 45.455 21.68 0.00 46.14 2.29
3428 6481 3.309138 TCAGCGACTTACTCGAGATACAC 59.691 47.826 21.68 6.53 46.14 2.90
3429 6482 2.284684 AGCGACTTACTCGAGATACACG 59.715 50.000 21.68 18.25 46.14 4.49
3430 6483 2.626892 CGACTTACTCGAGATACACGC 58.373 52.381 21.68 1.12 46.14 5.34
3431 6484 2.030091 CGACTTACTCGAGATACACGCA 59.970 50.000 21.68 0.00 46.14 5.24
3432 6485 3.484721 CGACTTACTCGAGATACACGCAA 60.485 47.826 21.68 0.00 46.14 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.219124 CTGATGGCGTGCAGTACCT 59.781 57.895 0.00 0.00 0.00 3.08
1 2 1.815421 CCTGATGGCGTGCAGTACC 60.815 63.158 0.00 0.00 0.00 3.34
2 3 0.807667 CTCCTGATGGCGTGCAGTAC 60.808 60.000 0.00 0.00 0.00 2.73
3 4 1.257750 ACTCCTGATGGCGTGCAGTA 61.258 55.000 0.00 0.00 28.81 2.74
4 5 1.257750 TACTCCTGATGGCGTGCAGT 61.258 55.000 0.00 0.00 32.84 4.40
5 6 0.807667 GTACTCCTGATGGCGTGCAG 60.808 60.000 0.00 0.00 34.49 4.41
6 7 1.218047 GTACTCCTGATGGCGTGCA 59.782 57.895 0.00 0.00 34.49 4.57
7 8 1.878522 CGTACTCCTGATGGCGTGC 60.879 63.158 0.00 0.00 32.84 5.34
8 9 1.878522 GCGTACTCCTGATGGCGTG 60.879 63.158 0.00 0.00 32.84 5.34
9 10 0.750546 TAGCGTACTCCTGATGGCGT 60.751 55.000 0.00 0.00 35.22 5.68
10 11 0.039978 CTAGCGTACTCCTGATGGCG 60.040 60.000 0.00 0.00 0.00 5.69
11 12 1.268352 CTCTAGCGTACTCCTGATGGC 59.732 57.143 0.00 0.00 0.00 4.40
12 13 1.268352 GCTCTAGCGTACTCCTGATGG 59.732 57.143 0.00 0.00 0.00 3.51
13 14 2.697431 GCTCTAGCGTACTCCTGATG 57.303 55.000 0.00 0.00 0.00 3.07
25 26 1.336755 GCTAGTCTCCACAGCTCTAGC 59.663 57.143 11.28 11.28 39.89 3.42
26 27 2.618241 CTGCTAGTCTCCACAGCTCTAG 59.382 54.545 0.00 0.00 36.26 2.43
27 28 2.649190 CTGCTAGTCTCCACAGCTCTA 58.351 52.381 0.00 0.00 36.26 2.43
28 29 1.473258 CTGCTAGTCTCCACAGCTCT 58.527 55.000 0.00 0.00 36.26 4.09
29 30 0.459489 CCTGCTAGTCTCCACAGCTC 59.541 60.000 0.00 0.00 36.26 4.09
30 31 0.975040 CCCTGCTAGTCTCCACAGCT 60.975 60.000 0.00 0.00 36.26 4.24
31 32 1.519719 CCCTGCTAGTCTCCACAGC 59.480 63.158 0.00 0.00 35.82 4.40
32 33 1.965754 GCCCCTGCTAGTCTCCACAG 61.966 65.000 0.00 0.00 33.53 3.66
33 34 1.990060 GCCCCTGCTAGTCTCCACA 60.990 63.158 0.00 0.00 33.53 4.17
34 35 2.904131 GCCCCTGCTAGTCTCCAC 59.096 66.667 0.00 0.00 33.53 4.02
35 36 2.759973 CGCCCCTGCTAGTCTCCA 60.760 66.667 0.00 0.00 34.43 3.86
36 37 4.228567 GCGCCCCTGCTAGTCTCC 62.229 72.222 0.00 0.00 34.43 3.71
37 38 4.577246 CGCGCCCCTGCTAGTCTC 62.577 72.222 0.00 0.00 34.43 3.36
39 40 3.917760 ATCGCGCCCCTGCTAGTC 61.918 66.667 0.00 0.00 34.43 2.59
40 41 4.227134 CATCGCGCCCCTGCTAGT 62.227 66.667 0.00 0.00 34.43 2.57
51 52 4.671569 GGGGCTCTAGGCATCGCG 62.672 72.222 0.00 0.00 44.01 5.87
52 53 4.321966 GGGGGCTCTAGGCATCGC 62.322 72.222 5.85 0.00 44.01 4.58
53 54 1.700042 AAAGGGGGCTCTAGGCATCG 61.700 60.000 5.85 0.00 44.01 3.84
54 55 0.553333 AAAAGGGGGCTCTAGGCATC 59.447 55.000 5.85 0.00 44.01 3.91
55 56 0.259938 CAAAAGGGGGCTCTAGGCAT 59.740 55.000 5.85 0.00 44.01 4.40
56 57 1.691219 CAAAAGGGGGCTCTAGGCA 59.309 57.895 5.85 0.00 44.01 4.75
57 58 1.076705 CCAAAAGGGGGCTCTAGGC 60.077 63.158 0.00 0.00 40.90 3.93
68 69 3.815401 CTCGCTACATTATCCCCAAAAGG 59.185 47.826 0.00 0.00 0.00 3.11
69 70 4.703897 TCTCGCTACATTATCCCCAAAAG 58.296 43.478 0.00 0.00 0.00 2.27
70 71 4.407621 TCTCTCGCTACATTATCCCCAAAA 59.592 41.667 0.00 0.00 0.00 2.44
71 72 3.964688 TCTCTCGCTACATTATCCCCAAA 59.035 43.478 0.00 0.00 0.00 3.28
72 73 3.572642 TCTCTCGCTACATTATCCCCAA 58.427 45.455 0.00 0.00 0.00 4.12
73 74 3.238788 TCTCTCGCTACATTATCCCCA 57.761 47.619 0.00 0.00 0.00 4.96
74 75 4.810191 AATCTCTCGCTACATTATCCCC 57.190 45.455 0.00 0.00 0.00 4.81
75 76 5.344884 GCTAATCTCTCGCTACATTATCCC 58.655 45.833 0.00 0.00 0.00 3.85
76 77 5.344884 GGCTAATCTCTCGCTACATTATCC 58.655 45.833 0.00 0.00 0.00 2.59
77 78 5.126384 AGGGCTAATCTCTCGCTACATTATC 59.874 44.000 0.00 0.00 0.00 1.75
78 79 5.020132 AGGGCTAATCTCTCGCTACATTAT 58.980 41.667 0.00 0.00 0.00 1.28
79 80 4.408276 AGGGCTAATCTCTCGCTACATTA 58.592 43.478 0.00 0.00 0.00 1.90
80 81 3.235200 AGGGCTAATCTCTCGCTACATT 58.765 45.455 0.00 0.00 0.00 2.71
81 82 2.823154 GAGGGCTAATCTCTCGCTACAT 59.177 50.000 0.00 0.00 0.00 2.29
82 83 2.158593 AGAGGGCTAATCTCTCGCTACA 60.159 50.000 0.00 0.00 36.99 2.74
83 84 2.227865 CAGAGGGCTAATCTCTCGCTAC 59.772 54.545 0.00 0.00 39.36 3.58
84 85 2.509569 CAGAGGGCTAATCTCTCGCTA 58.490 52.381 0.00 0.00 39.36 4.26
85 86 1.327303 CAGAGGGCTAATCTCTCGCT 58.673 55.000 0.00 0.00 39.36 4.93
86 87 0.316841 CCAGAGGGCTAATCTCTCGC 59.683 60.000 0.00 0.00 39.36 5.03
87 88 1.698506 ACCAGAGGGCTAATCTCTCG 58.301 55.000 0.00 0.00 39.36 4.04
88 89 3.839778 ACTACCAGAGGGCTAATCTCTC 58.160 50.000 0.00 0.00 39.36 3.20
89 90 3.983533 ACTACCAGAGGGCTAATCTCT 57.016 47.619 0.00 0.00 41.82 3.10
90 91 5.011227 CCTAAACTACCAGAGGGCTAATCTC 59.989 48.000 0.00 0.00 37.90 2.75
91 92 4.902448 CCTAAACTACCAGAGGGCTAATCT 59.098 45.833 0.00 0.00 37.90 2.40
92 93 4.503469 GCCTAAACTACCAGAGGGCTAATC 60.503 50.000 0.00 0.00 37.90 1.75
93 94 3.391626 GCCTAAACTACCAGAGGGCTAAT 59.608 47.826 0.00 0.00 37.90 1.73
94 95 2.770232 GCCTAAACTACCAGAGGGCTAA 59.230 50.000 0.00 0.00 37.90 3.09
95 96 2.395619 GCCTAAACTACCAGAGGGCTA 58.604 52.381 0.00 0.00 37.90 3.93
96 97 1.205055 GCCTAAACTACCAGAGGGCT 58.795 55.000 0.00 0.00 37.90 5.19
97 98 0.180642 GGCCTAAACTACCAGAGGGC 59.819 60.000 0.00 0.00 46.04 5.19
98 99 1.209747 GTGGCCTAAACTACCAGAGGG 59.790 57.143 3.32 0.00 41.29 4.30
99 100 1.209747 GGTGGCCTAAACTACCAGAGG 59.790 57.143 3.32 0.00 33.12 3.69
100 101 2.093447 CAGGTGGCCTAAACTACCAGAG 60.093 54.545 3.32 0.00 35.66 3.35
101 102 1.906574 CAGGTGGCCTAAACTACCAGA 59.093 52.381 3.32 0.00 35.66 3.86
102 103 1.628846 ACAGGTGGCCTAAACTACCAG 59.371 52.381 3.32 0.82 35.66 4.00
103 104 1.737199 ACAGGTGGCCTAAACTACCA 58.263 50.000 3.32 0.00 35.66 3.25
104 105 2.873094 AACAGGTGGCCTAAACTACC 57.127 50.000 3.32 0.97 29.64 3.18
105 106 4.825634 AGAAAAACAGGTGGCCTAAACTAC 59.174 41.667 3.32 0.00 29.64 2.73
106 107 4.825085 CAGAAAAACAGGTGGCCTAAACTA 59.175 41.667 3.32 0.00 29.64 2.24
107 108 3.636764 CAGAAAAACAGGTGGCCTAAACT 59.363 43.478 3.32 0.00 29.64 2.66
108 109 3.383505 ACAGAAAAACAGGTGGCCTAAAC 59.616 43.478 3.32 0.00 29.64 2.01
109 110 3.637769 ACAGAAAAACAGGTGGCCTAAA 58.362 40.909 3.32 0.00 29.64 1.85
110 111 3.306472 ACAGAAAAACAGGTGGCCTAA 57.694 42.857 3.32 0.00 29.64 2.69
111 112 3.306472 AACAGAAAAACAGGTGGCCTA 57.694 42.857 3.32 0.00 29.64 3.93
112 113 2.159179 AACAGAAAAACAGGTGGCCT 57.841 45.000 3.32 0.00 0.00 5.19
113 114 3.320826 ACATAACAGAAAAACAGGTGGCC 59.679 43.478 0.00 0.00 0.00 5.36
114 115 4.584327 ACATAACAGAAAAACAGGTGGC 57.416 40.909 0.00 0.00 0.00 5.01
115 116 6.263168 AGAGAACATAACAGAAAAACAGGTGG 59.737 38.462 0.00 0.00 0.00 4.61
116 117 7.227512 AGAGAGAACATAACAGAAAAACAGGTG 59.772 37.037 0.00 0.00 0.00 4.00
117 118 7.283329 AGAGAGAACATAACAGAAAAACAGGT 58.717 34.615 0.00 0.00 0.00 4.00
118 119 7.736447 AGAGAGAACATAACAGAAAAACAGG 57.264 36.000 0.00 0.00 0.00 4.00
119 120 8.616076 ACAAGAGAGAACATAACAGAAAAACAG 58.384 33.333 0.00 0.00 0.00 3.16
120 121 8.506168 ACAAGAGAGAACATAACAGAAAAACA 57.494 30.769 0.00 0.00 0.00 2.83
123 124 9.052759 GGTTACAAGAGAGAACATAACAGAAAA 57.947 33.333 0.00 0.00 0.00 2.29
124 125 8.208224 TGGTTACAAGAGAGAACATAACAGAAA 58.792 33.333 0.00 0.00 0.00 2.52
125 126 7.732025 TGGTTACAAGAGAGAACATAACAGAA 58.268 34.615 0.00 0.00 0.00 3.02
126 127 7.297936 TGGTTACAAGAGAGAACATAACAGA 57.702 36.000 0.00 0.00 0.00 3.41
127 128 7.819415 TCATGGTTACAAGAGAGAACATAACAG 59.181 37.037 0.00 0.00 0.00 3.16
128 129 7.676004 TCATGGTTACAAGAGAGAACATAACA 58.324 34.615 0.00 0.00 0.00 2.41
129 130 8.723942 ATCATGGTTACAAGAGAGAACATAAC 57.276 34.615 0.00 0.00 0.00 1.89
130 131 8.539544 TGATCATGGTTACAAGAGAGAACATAA 58.460 33.333 0.00 0.00 0.00 1.90
131 132 7.981789 GTGATCATGGTTACAAGAGAGAACATA 59.018 37.037 0.00 0.00 0.00 2.29
132 133 6.820656 GTGATCATGGTTACAAGAGAGAACAT 59.179 38.462 0.00 0.00 0.00 2.71
133 134 6.014242 AGTGATCATGGTTACAAGAGAGAACA 60.014 38.462 3.46 0.00 0.00 3.18
134 135 6.402222 AGTGATCATGGTTACAAGAGAGAAC 58.598 40.000 3.46 0.00 0.00 3.01
135 136 6.611613 AGTGATCATGGTTACAAGAGAGAA 57.388 37.500 3.46 0.00 0.00 2.87
136 137 6.211384 TCAAGTGATCATGGTTACAAGAGAGA 59.789 38.462 3.46 0.00 0.00 3.10
137 138 6.401394 TCAAGTGATCATGGTTACAAGAGAG 58.599 40.000 3.46 0.00 0.00 3.20
138 139 6.358974 TCAAGTGATCATGGTTACAAGAGA 57.641 37.500 3.46 0.00 0.00 3.10
164 165 1.828224 GCAGCGGGAAAATAGGGGG 60.828 63.158 0.00 0.00 0.00 5.40
165 166 0.395724 AAGCAGCGGGAAAATAGGGG 60.396 55.000 0.00 0.00 0.00 4.79
166 167 1.405463 GAAAGCAGCGGGAAAATAGGG 59.595 52.381 0.00 0.00 0.00 3.53
167 168 2.356069 GAGAAAGCAGCGGGAAAATAGG 59.644 50.000 0.00 0.00 0.00 2.57
168 169 2.356069 GGAGAAAGCAGCGGGAAAATAG 59.644 50.000 0.00 0.00 0.00 1.73
169 170 2.026262 AGGAGAAAGCAGCGGGAAAATA 60.026 45.455 0.00 0.00 0.00 1.40
170 171 1.177401 GGAGAAAGCAGCGGGAAAAT 58.823 50.000 0.00 0.00 0.00 1.82
171 172 0.110486 AGGAGAAAGCAGCGGGAAAA 59.890 50.000 0.00 0.00 0.00 2.29
172 173 0.981183 TAGGAGAAAGCAGCGGGAAA 59.019 50.000 0.00 0.00 0.00 3.13
173 174 0.981183 TTAGGAGAAAGCAGCGGGAA 59.019 50.000 0.00 0.00 0.00 3.97
174 175 0.981183 TTTAGGAGAAAGCAGCGGGA 59.019 50.000 0.00 0.00 0.00 5.14
175 176 1.943340 GATTTAGGAGAAAGCAGCGGG 59.057 52.381 0.00 0.00 0.00 6.13
176 177 2.632377 TGATTTAGGAGAAAGCAGCGG 58.368 47.619 0.00 0.00 0.00 5.52
177 178 4.333649 TCATTGATTTAGGAGAAAGCAGCG 59.666 41.667 0.00 0.00 0.00 5.18
178 179 5.824904 TCATTGATTTAGGAGAAAGCAGC 57.175 39.130 0.00 0.00 0.00 5.25
179 180 6.264088 GCTTCATTGATTTAGGAGAAAGCAG 58.736 40.000 0.00 0.00 0.00 4.24
180 181 5.126061 GGCTTCATTGATTTAGGAGAAAGCA 59.874 40.000 0.00 0.00 0.00 3.91
181 182 5.586339 GGCTTCATTGATTTAGGAGAAAGC 58.414 41.667 0.00 0.00 0.00 3.51
182 183 5.220931 CCGGCTTCATTGATTTAGGAGAAAG 60.221 44.000 0.00 0.00 0.00 2.62
183 184 4.640201 CCGGCTTCATTGATTTAGGAGAAA 59.360 41.667 0.00 0.00 0.00 2.52
184 185 4.199310 CCGGCTTCATTGATTTAGGAGAA 58.801 43.478 0.00 0.00 0.00 2.87
185 186 3.199946 ACCGGCTTCATTGATTTAGGAGA 59.800 43.478 0.00 0.00 0.00 3.71
186 187 3.545703 ACCGGCTTCATTGATTTAGGAG 58.454 45.455 0.00 0.00 0.00 3.69
187 188 3.644966 ACCGGCTTCATTGATTTAGGA 57.355 42.857 0.00 0.00 0.00 2.94
188 189 5.048713 GGATAACCGGCTTCATTGATTTAGG 60.049 44.000 0.00 0.00 0.00 2.69
189 190 5.048713 GGGATAACCGGCTTCATTGATTTAG 60.049 44.000 0.00 0.00 36.97 1.85
190 191 4.825085 GGGATAACCGGCTTCATTGATTTA 59.175 41.667 0.00 0.00 36.97 1.40
191 192 3.636764 GGGATAACCGGCTTCATTGATTT 59.363 43.478 0.00 0.00 36.97 2.17
192 193 3.222603 GGGATAACCGGCTTCATTGATT 58.777 45.455 0.00 0.00 36.97 2.57
193 194 2.863809 GGGATAACCGGCTTCATTGAT 58.136 47.619 0.00 0.00 36.97 2.57
194 195 2.341846 GGGATAACCGGCTTCATTGA 57.658 50.000 0.00 0.00 36.97 2.57
205 206 5.907866 TTTTTGAAAGATCCGGGATAACC 57.092 39.130 10.08 0.00 0.00 2.85
226 227 6.569179 ATTGCCTAGTTGACATACGTTTTT 57.431 33.333 0.00 0.00 0.00 1.94
227 228 6.569179 AATTGCCTAGTTGACATACGTTTT 57.431 33.333 0.00 0.00 0.00 2.43
228 229 6.569179 AAATTGCCTAGTTGACATACGTTT 57.431 33.333 0.00 0.00 0.00 3.60
229 230 6.569179 AAAATTGCCTAGTTGACATACGTT 57.431 33.333 0.00 0.00 0.00 3.99
272 278 6.266786 ACGGTACCATGATATGATACTCAACA 59.733 38.462 13.54 0.00 0.00 3.33
467 474 5.012664 GGGGACAACATAGGGAATTTTTGTT 59.987 40.000 0.00 0.00 0.00 2.83
515 525 2.569404 GTGGAAACCAGAGATGAGAGGT 59.431 50.000 0.00 0.00 32.34 3.85
658 724 5.475719 TCGTGTCCTTTTGAAGTGGTATAG 58.524 41.667 0.00 0.00 0.00 1.31
763 829 9.798994 GGTTCTTCGTATCTAGACAAATCTAAA 57.201 33.333 0.00 0.00 36.98 1.85
858 924 6.385443 TCCCTATCTACATCCAACAGATCTT 58.615 40.000 0.00 0.00 30.59 2.40
912 982 8.763601 GTTATCTATCTAGTATTTGGAGGCCAT 58.236 37.037 5.01 0.00 31.53 4.40
939 1009 1.745087 CAGGTGTGCGGCTATTTCAAT 59.255 47.619 0.00 0.00 0.00 2.57
949 1019 0.464036 TATAGGCTTCAGGTGTGCGG 59.536 55.000 0.00 0.00 0.00 5.69
969 1039 9.525409 GTACTCTTTTCTTTTGCGGTCTATATA 57.475 33.333 0.00 0.00 0.00 0.86
975 1045 3.246936 ACGTACTCTTTTCTTTTGCGGTC 59.753 43.478 0.00 0.00 0.00 4.79
1025 1097 1.905894 TCCCGATGAACCATCTTGACA 59.094 47.619 5.54 0.00 38.59 3.58
1052 1124 0.393537 CCACCTCCTGCACCATCTTC 60.394 60.000 0.00 0.00 0.00 2.87
1056 1128 4.052518 GGCCACCTCCTGCACCAT 62.053 66.667 0.00 0.00 0.00 3.55
1135 1207 4.662961 CCTGCTGTGCGACGGTGA 62.663 66.667 0.00 0.00 0.00 4.02
1151 1223 0.899717 TTGGGATGACAAGCTTGGCC 60.900 55.000 29.26 21.92 34.48 5.36
1160 1232 0.108377 CGTCCACGATTGGGATGACA 60.108 55.000 0.00 0.00 44.11 3.58
1169 1241 2.126071 CGGCTCACGTCCACGATT 60.126 61.111 6.03 0.00 43.02 3.34
1278 1350 1.344763 CTCGTCCAGGAACTCCTTTGT 59.655 52.381 0.00 0.00 46.09 2.83
1335 1407 2.050144 ACACTTCAGCTTCTCCTCCAA 58.950 47.619 0.00 0.00 0.00 3.53
1612 1790 3.132056 TCTCCCACTCTCTAGGGTGTAT 58.868 50.000 9.09 0.00 45.64 2.29
1639 1817 0.918258 TGGCCTTCAGCACATCCATA 59.082 50.000 3.32 0.00 46.50 2.74
1670 1848 0.772124 AAGCCCTCCTCCTGGTTCAA 60.772 55.000 0.00 0.00 34.23 2.69
1944 2122 7.739498 TTTGTCCATTGTAGAAGTCCTTAAC 57.261 36.000 0.00 0.00 0.00 2.01
1948 2126 6.543831 GCATATTTGTCCATTGTAGAAGTCCT 59.456 38.462 0.00 0.00 0.00 3.85
1949 2127 6.318648 TGCATATTTGTCCATTGTAGAAGTCC 59.681 38.462 0.00 0.00 0.00 3.85
2039 2239 2.362760 TGCCATGGCGCCTTGAAT 60.363 55.556 36.41 17.07 45.51 2.57
2087 2287 0.681733 AGAACATCGCCAGTGACAGT 59.318 50.000 0.00 0.00 0.00 3.55
2117 2317 0.543174 GCCCTATGATCCTCTCCGGT 60.543 60.000 0.00 0.00 0.00 5.28
2165 2365 0.400213 ACTTCTTGAACATGGCCGGA 59.600 50.000 5.05 0.00 0.00 5.14
2322 2522 4.872691 CACTCACTCCCTACAGCAAATTAG 59.127 45.833 0.00 0.00 0.00 1.73
2365 2565 5.962031 TCCTATTCACACTACACTTATGGGT 59.038 40.000 0.00 0.00 0.00 4.51
2422 2622 9.196552 GCACTTGGCTATTTATTTTATTCCATC 57.803 33.333 0.00 0.00 40.25 3.51
2438 2638 1.599518 CCGGTTGTGCACTTGGCTA 60.600 57.895 19.41 0.00 45.15 3.93
2506 2707 2.288334 TGCATGTTCACCAGTTCAATGC 60.288 45.455 0.00 0.00 0.00 3.56
2739 2953 9.263538 GTTGTGTGATATAACCGGTGATATAAA 57.736 33.333 22.43 12.40 0.00 1.40
2740 2954 8.644216 AGTTGTGTGATATAACCGGTGATATAA 58.356 33.333 22.43 14.11 31.37 0.98
2741 2955 8.085909 CAGTTGTGTGATATAACCGGTGATATA 58.914 37.037 22.43 15.11 31.37 0.86
2742 2956 6.929049 CAGTTGTGTGATATAACCGGTGATAT 59.071 38.462 22.56 22.56 31.37 1.63
2743 2957 6.277605 CAGTTGTGTGATATAACCGGTGATA 58.722 40.000 14.33 14.33 31.37 2.15
2745 2959 4.500127 CAGTTGTGTGATATAACCGGTGA 58.500 43.478 8.52 0.00 31.37 4.02
2746 2960 3.621268 CCAGTTGTGTGATATAACCGGTG 59.379 47.826 8.52 0.00 31.37 4.94
2747 2961 3.262405 ACCAGTTGTGTGATATAACCGGT 59.738 43.478 0.00 0.00 36.63 5.28
2749 2963 4.932799 TGAACCAGTTGTGTGATATAACCG 59.067 41.667 0.00 0.00 31.37 4.44
2750 2964 6.811253 TTGAACCAGTTGTGTGATATAACC 57.189 37.500 0.00 0.00 31.37 2.85
2862 5248 2.687370 TGTCCACACAGATGATGTTCG 58.313 47.619 0.00 0.00 41.41 3.95
2892 5287 0.179222 GTTTCTTAGGCAGCGCGTTC 60.179 55.000 8.43 0.00 0.00 3.95
2933 5328 4.393834 TGTTACAGCAGTTTTATCAGCCA 58.606 39.130 0.00 0.00 0.00 4.75
3002 5399 5.278022 GCGAGTCTCAACAAAAGGAGAAAAT 60.278 40.000 0.00 0.00 41.48 1.82
3027 5424 3.007074 TCCAACCGTACAGTGAAATGCTA 59.993 43.478 0.00 0.00 0.00 3.49
3147 5544 8.121305 TCAGTTTTGCTGGAACATATAATTGT 57.879 30.769 0.00 0.00 45.08 2.71
3149 5546 8.806146 AGTTCAGTTTTGCTGGAACATATAATT 58.194 29.630 0.00 0.00 45.08 1.40
3150 5547 8.353423 AGTTCAGTTTTGCTGGAACATATAAT 57.647 30.769 0.00 0.00 45.08 1.28
3151 5548 7.759489 AGTTCAGTTTTGCTGGAACATATAA 57.241 32.000 0.00 0.00 45.08 0.98
3193 6232 0.882042 CCAGGAGAGTGTGTGTGTGC 60.882 60.000 0.00 0.00 0.00 4.57
3207 6246 2.432874 TCGTCAAGTTCTTGAACCAGGA 59.567 45.455 15.44 6.98 32.04 3.86
3208 6247 2.833794 TCGTCAAGTTCTTGAACCAGG 58.166 47.619 15.44 5.16 32.04 4.45
3210 6249 5.828299 AAAATCGTCAAGTTCTTGAACCA 57.172 34.783 15.44 4.78 32.04 3.67
3211 6250 7.534239 GTCATAAAATCGTCAAGTTCTTGAACC 59.466 37.037 15.44 5.27 32.04 3.62
3212 6251 7.534239 GGTCATAAAATCGTCAAGTTCTTGAAC 59.466 37.037 15.44 5.44 32.04 3.18
3215 6254 6.898041 TGGTCATAAAATCGTCAAGTTCTTG 58.102 36.000 6.24 6.24 0.00 3.02
3217 6256 7.687941 AATGGTCATAAAATCGTCAAGTTCT 57.312 32.000 0.00 0.00 0.00 3.01
3219 6258 8.110860 AGAAATGGTCATAAAATCGTCAAGTT 57.889 30.769 0.00 0.00 0.00 2.66
3220 6259 7.687941 AGAAATGGTCATAAAATCGTCAAGT 57.312 32.000 0.00 0.00 0.00 3.16
3222 6261 8.335532 AGAAGAAATGGTCATAAAATCGTCAA 57.664 30.769 0.00 0.00 0.00 3.18
3223 6262 7.065803 GGAGAAGAAATGGTCATAAAATCGTCA 59.934 37.037 0.00 0.00 0.00 4.35
3224 6263 7.281100 AGGAGAAGAAATGGTCATAAAATCGTC 59.719 37.037 0.00 0.00 0.00 4.20
3225 6264 7.066284 CAGGAGAAGAAATGGTCATAAAATCGT 59.934 37.037 0.00 0.00 0.00 3.73
3226 6265 7.412853 CAGGAGAAGAAATGGTCATAAAATCG 58.587 38.462 0.00 0.00 0.00 3.34
3227 6266 7.340487 ACCAGGAGAAGAAATGGTCATAAAATC 59.660 37.037 0.00 0.00 42.35 2.17
3228 6267 7.184862 ACCAGGAGAAGAAATGGTCATAAAAT 58.815 34.615 0.00 0.00 42.35 1.82
3229 6268 6.552008 ACCAGGAGAAGAAATGGTCATAAAA 58.448 36.000 0.00 0.00 42.35 1.52
3230 6269 6.139679 ACCAGGAGAAGAAATGGTCATAAA 57.860 37.500 0.00 0.00 42.35 1.40
3231 6270 5.779241 ACCAGGAGAAGAAATGGTCATAA 57.221 39.130 0.00 0.00 42.35 1.90
3232 6271 5.779241 AACCAGGAGAAGAAATGGTCATA 57.221 39.130 0.00 0.00 45.21 2.15
3233 6272 4.664688 AACCAGGAGAAGAAATGGTCAT 57.335 40.909 0.00 0.00 45.21 3.06
3234 6273 4.104738 AGAAACCAGGAGAAGAAATGGTCA 59.895 41.667 0.00 0.00 45.21 4.02
3235 6274 4.457257 CAGAAACCAGGAGAAGAAATGGTC 59.543 45.833 0.00 0.00 45.21 4.02
3237 6276 4.457257 GTCAGAAACCAGGAGAAGAAATGG 59.543 45.833 0.00 0.00 38.83 3.16
3238 6277 5.049129 GTGTCAGAAACCAGGAGAAGAAATG 60.049 44.000 0.00 0.00 0.00 2.32
3239 6278 5.066593 GTGTCAGAAACCAGGAGAAGAAAT 58.933 41.667 0.00 0.00 0.00 2.17
3240 6279 4.164221 AGTGTCAGAAACCAGGAGAAGAAA 59.836 41.667 0.00 0.00 0.00 2.52
3260 6299 3.369147 GCGTGGCATATCAAGCTATAGTG 59.631 47.826 0.84 0.00 38.70 2.74
3267 6306 2.483876 TCTTAGCGTGGCATATCAAGC 58.516 47.619 0.00 0.00 41.29 4.01
3287 6340 5.294356 TCGCTAAGTGTCAGTTGTATGTTT 58.706 37.500 2.99 0.00 0.00 2.83
3291 6344 5.584253 ATCTCGCTAAGTGTCAGTTGTAT 57.416 39.130 2.99 0.00 0.00 2.29
3297 6350 4.576216 ATGGTATCTCGCTAAGTGTCAG 57.424 45.455 0.00 0.00 0.00 3.51
3298 6351 5.593095 AGTTATGGTATCTCGCTAAGTGTCA 59.407 40.000 0.00 0.00 0.00 3.58
3299 6352 6.074544 AGTTATGGTATCTCGCTAAGTGTC 57.925 41.667 0.00 0.00 0.00 3.67
3300 6353 7.501559 TCTTAGTTATGGTATCTCGCTAAGTGT 59.498 37.037 0.00 0.00 36.79 3.55
3301 6354 7.804129 GTCTTAGTTATGGTATCTCGCTAAGTG 59.196 40.741 0.00 0.00 36.79 3.16
3302 6355 7.720515 AGTCTTAGTTATGGTATCTCGCTAAGT 59.279 37.037 0.00 0.00 36.79 2.24
3303 6356 8.101654 AGTCTTAGTTATGGTATCTCGCTAAG 57.898 38.462 0.00 0.00 36.78 2.18
3315 6368 7.419711 TGGGAGTCTTTAGTCTTAGTTATGG 57.580 40.000 0.00 0.00 0.00 2.74
3320 6373 8.840200 TTGATATGGGAGTCTTTAGTCTTAGT 57.160 34.615 0.00 0.00 0.00 2.24
3366 6419 1.028905 TCTTTTGGTGCTGGTTTCCG 58.971 50.000 0.00 0.00 0.00 4.30
3372 6425 3.318839 TCAGTTTGATCTTTTGGTGCTGG 59.681 43.478 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.