Multiple sequence alignment - TraesCS5D01G290000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G290000 chr5D 100.000 2825 0 0 1 2825 388348328 388345504 0.000000e+00 5217.0
1 TraesCS5D01G290000 chr5D 93.598 328 18 3 1 327 52232157 52232482 1.180000e-133 486.0
2 TraesCS5D01G290000 chr5A 94.595 999 29 12 750 1723 491381331 491380333 0.000000e+00 1522.0
3 TraesCS5D01G290000 chr5A 84.680 359 46 5 334 688 491381694 491381341 1.610000e-92 350.0
4 TraesCS5D01G290000 chr5A 96.512 86 2 1 2677 2762 491380342 491380258 1.060000e-29 141.0
5 TraesCS5D01G290000 chr5B 91.633 992 49 17 750 1715 466995248 466994265 0.000000e+00 1341.0
6 TraesCS5D01G290000 chr5B 86.285 576 30 12 1861 2411 664892205 664891654 5.250000e-162 580.0
7 TraesCS5D01G290000 chr5B 89.547 287 12 6 2408 2676 664891519 664891233 5.790000e-92 348.0
8 TraesCS5D01G290000 chr5B 81.894 359 53 5 334 688 466995608 466995258 2.750000e-75 292.0
9 TraesCS5D01G290000 chr5B 90.972 144 10 2 2272 2412 664891694 664891551 1.030000e-44 191.0
10 TraesCS5D01G290000 chr5B 94.253 87 4 1 1750 1835 664892282 664892196 6.350000e-27 132.0
11 TraesCS5D01G290000 chr2D 96.084 664 23 2 1750 2411 22161052 22160390 0.000000e+00 1079.0
12 TraesCS5D01G290000 chr2D 95.008 661 32 1 1751 2411 503483232 503483891 0.000000e+00 1037.0
13 TraesCS5D01G290000 chr2D 94.603 315 16 1 1 315 15582472 15582785 1.180000e-133 486.0
14 TraesCS5D01G290000 chr2D 95.324 278 4 2 2408 2676 22160257 22159980 1.550000e-117 433.0
15 TraesCS5D01G290000 chr2D 89.324 281 21 3 2405 2676 503484021 503484301 7.490000e-91 344.0
16 TraesCS5D01G290000 chr2D 100.000 30 0 0 1723 1752 22161132 22161103 3.930000e-04 56.5
17 TraesCS5D01G290000 chr3B 93.178 645 42 2 1753 2397 760412259 760411617 0.000000e+00 946.0
18 TraesCS5D01G290000 chr3B 87.781 401 38 8 1765 2158 240411961 240412357 2.560000e-125 459.0
19 TraesCS5D01G290000 chr3B 89.716 282 18 3 2408 2679 760411471 760411191 1.610000e-92 350.0
20 TraesCS5D01G290000 chr3B 90.351 228 22 0 2183 2410 240412348 240412575 1.640000e-77 300.0
21 TraesCS5D01G290000 chr3B 87.179 78 6 4 2613 2688 114607596 114607671 5.010000e-13 86.1
22 TraesCS5D01G290000 chr4A 90.347 663 58 5 1750 2411 714184733 714184076 0.000000e+00 865.0
23 TraesCS5D01G290000 chr6D 89.894 663 46 1 1752 2393 431021986 431021324 0.000000e+00 833.0
24 TraesCS5D01G290000 chr6D 94.081 321 18 1 1 321 28253965 28253646 1.180000e-133 486.0
25 TraesCS5D01G290000 chr6D 92.063 63 5 0 2614 2676 459270224 459270286 3.880000e-14 89.8
26 TraesCS5D01G290000 chr1B 91.771 559 43 3 1854 2411 67034077 67033521 0.000000e+00 774.0
27 TraesCS5D01G290000 chr1B 91.413 559 45 3 1854 2411 629754585 629755141 0.000000e+00 763.0
28 TraesCS5D01G290000 chr1B 84.053 301 19 11 2405 2676 629755468 629755768 2.160000e-66 263.0
29 TraesCS5D01G290000 chr1B 97.500 80 2 0 1752 1831 629754514 629754593 1.360000e-28 137.0
30 TraesCS5D01G290000 chr1B 100.000 45 0 0 708 752 180834995 180834951 1.800000e-12 84.2
31 TraesCS5D01G290000 chr7D 94.427 323 15 2 1 321 474022937 474022616 7.030000e-136 494.0
32 TraesCS5D01G290000 chr7D 94.357 319 17 1 3 321 104281224 104280907 3.270000e-134 488.0
33 TraesCS5D01G290000 chr7D 93.538 325 17 3 1 321 99838100 99837776 5.470000e-132 481.0
34 TraesCS5D01G290000 chr7D 93.252 326 20 2 1 326 613467343 613467020 1.970000e-131 479.0
35 TraesCS5D01G290000 chr7D 88.889 81 6 3 2606 2685 630695595 630695517 2.320000e-16 97.1
36 TraesCS5D01G290000 chr4D 93.846 325 14 3 1 321 486520252 486520574 4.230000e-133 484.0
37 TraesCS5D01G290000 chr3D 93.846 325 15 2 1 321 582941047 582940724 4.230000e-133 484.0
38 TraesCS5D01G290000 chr6A 94.915 59 1 2 2613 2670 46948081 46948138 1.080000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G290000 chr5D 388345504 388348328 2824 True 5217.000000 5217 100.000000 1 2825 1 chr5D.!!$R1 2824
1 TraesCS5D01G290000 chr5A 491380258 491381694 1436 True 671.000000 1522 91.929000 334 2762 3 chr5A.!!$R1 2428
2 TraesCS5D01G290000 chr5B 466994265 466995608 1343 True 816.500000 1341 86.763500 334 1715 2 chr5B.!!$R1 1381
3 TraesCS5D01G290000 chr5B 664891233 664892282 1049 True 312.750000 580 90.264250 1750 2676 4 chr5B.!!$R2 926
4 TraesCS5D01G290000 chr2D 503483232 503484301 1069 False 690.500000 1037 92.166000 1751 2676 2 chr2D.!!$F2 925
5 TraesCS5D01G290000 chr2D 22159980 22161132 1152 True 522.833333 1079 97.136000 1723 2676 3 chr2D.!!$R1 953
6 TraesCS5D01G290000 chr3B 760411191 760412259 1068 True 648.000000 946 91.447000 1753 2679 2 chr3B.!!$R1 926
7 TraesCS5D01G290000 chr3B 240411961 240412575 614 False 379.500000 459 89.066000 1765 2410 2 chr3B.!!$F2 645
8 TraesCS5D01G290000 chr4A 714184076 714184733 657 True 865.000000 865 90.347000 1750 2411 1 chr4A.!!$R1 661
9 TraesCS5D01G290000 chr6D 431021324 431021986 662 True 833.000000 833 89.894000 1752 2393 1 chr6D.!!$R2 641
10 TraesCS5D01G290000 chr1B 67033521 67034077 556 True 774.000000 774 91.771000 1854 2411 1 chr1B.!!$R1 557
11 TraesCS5D01G290000 chr1B 629754514 629755768 1254 False 387.666667 763 90.988667 1752 2676 3 chr1B.!!$F1 924

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.034863 TATCAACCGGGACCAAAGGC 60.035 55.0 6.32 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1896 1984 0.106708 TCCTCAAAAGTGCAGTCGCT 59.893 50.0 0.0 0.0 39.64 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.160521 CACTTCTCTCTATTAGCTAGCTAACA 57.839 38.462 33.80 24.62 40.76 2.41
26 27 8.073768 CACTTCTCTCTATTAGCTAGCTAACAC 58.926 40.741 33.80 0.00 40.76 3.32
27 28 7.229907 ACTTCTCTCTATTAGCTAGCTAACACC 59.770 40.741 33.80 0.00 40.76 4.16
28 29 6.005198 TCTCTCTATTAGCTAGCTAACACCC 58.995 44.000 33.80 0.00 40.76 4.61
29 30 5.954757 TCTCTATTAGCTAGCTAACACCCT 58.045 41.667 33.80 22.02 40.76 4.34
30 31 7.017353 TCTCTCTATTAGCTAGCTAACACCCTA 59.983 40.741 33.80 21.97 40.76 3.53
31 32 7.524290 TCTCTATTAGCTAGCTAACACCCTAA 58.476 38.462 33.80 15.90 40.76 2.69
32 33 8.003044 TCTCTATTAGCTAGCTAACACCCTAAA 58.997 37.037 33.80 15.20 40.76 1.85
33 34 8.722622 TCTATTAGCTAGCTAACACCCTAAAT 57.277 34.615 33.80 20.38 40.76 1.40
34 35 9.155785 TCTATTAGCTAGCTAACACCCTAAATT 57.844 33.333 33.80 18.87 40.76 1.82
37 38 8.953368 TTAGCTAGCTAACACCCTAAATTAAC 57.047 34.615 29.22 0.00 34.02 2.01
38 39 6.354938 AGCTAGCTAACACCCTAAATTAACC 58.645 40.000 17.69 0.00 0.00 2.85
39 40 5.530171 GCTAGCTAACACCCTAAATTAACCC 59.470 44.000 7.70 0.00 0.00 4.11
40 41 4.863548 AGCTAACACCCTAAATTAACCCC 58.136 43.478 0.00 0.00 0.00 4.95
41 42 3.956199 GCTAACACCCTAAATTAACCCCC 59.044 47.826 0.00 0.00 0.00 5.40
56 57 3.076350 CCCCCAAAACCCCCTAAAC 57.924 57.895 0.00 0.00 0.00 2.01
57 58 0.545787 CCCCCAAAACCCCCTAAACC 60.546 60.000 0.00 0.00 0.00 3.27
58 59 0.191314 CCCCAAAACCCCCTAAACCA 59.809 55.000 0.00 0.00 0.00 3.67
59 60 1.344065 CCCAAAACCCCCTAAACCAC 58.656 55.000 0.00 0.00 0.00 4.16
60 61 1.344065 CCAAAACCCCCTAAACCACC 58.656 55.000 0.00 0.00 0.00 4.61
61 62 1.413227 CCAAAACCCCCTAAACCACCA 60.413 52.381 0.00 0.00 0.00 4.17
62 63 2.615391 CAAAACCCCCTAAACCACCAT 58.385 47.619 0.00 0.00 0.00 3.55
63 64 2.565391 CAAAACCCCCTAAACCACCATC 59.435 50.000 0.00 0.00 0.00 3.51
64 65 1.768265 AACCCCCTAAACCACCATCT 58.232 50.000 0.00 0.00 0.00 2.90
65 66 1.768265 ACCCCCTAAACCACCATCTT 58.232 50.000 0.00 0.00 0.00 2.40
66 67 2.078611 ACCCCCTAAACCACCATCTTT 58.921 47.619 0.00 0.00 0.00 2.52
67 68 2.042569 ACCCCCTAAACCACCATCTTTC 59.957 50.000 0.00 0.00 0.00 2.62
68 69 2.042433 CCCCCTAAACCACCATCTTTCA 59.958 50.000 0.00 0.00 0.00 2.69
69 70 3.501385 CCCCCTAAACCACCATCTTTCAA 60.501 47.826 0.00 0.00 0.00 2.69
70 71 4.156477 CCCCTAAACCACCATCTTTCAAA 58.844 43.478 0.00 0.00 0.00 2.69
71 72 4.591072 CCCCTAAACCACCATCTTTCAAAA 59.409 41.667 0.00 0.00 0.00 2.44
72 73 5.071115 CCCCTAAACCACCATCTTTCAAAAA 59.929 40.000 0.00 0.00 0.00 1.94
91 92 2.071778 AAAAACTTCAGCTCCTGCCA 57.928 45.000 0.00 0.00 40.80 4.92
92 93 1.613836 AAAACTTCAGCTCCTGCCAG 58.386 50.000 0.00 0.00 40.80 4.85
93 94 0.892814 AAACTTCAGCTCCTGCCAGC 60.893 55.000 0.00 0.00 40.80 4.85
99 100 2.270205 GCTCCTGCCAGCTGCTAA 59.730 61.111 8.66 0.00 42.00 3.09
100 101 2.111582 GCTCCTGCCAGCTGCTAAC 61.112 63.158 8.66 0.00 42.00 2.34
101 102 1.812922 CTCCTGCCAGCTGCTAACG 60.813 63.158 8.66 0.00 42.00 3.18
102 103 3.503363 CCTGCCAGCTGCTAACGC 61.503 66.667 8.66 6.57 42.00 4.84
103 104 3.857854 CTGCCAGCTGCTAACGCG 61.858 66.667 8.66 3.53 42.00 6.01
104 105 4.680237 TGCCAGCTGCTAACGCGT 62.680 61.111 5.58 5.58 42.00 6.01
105 106 4.152625 GCCAGCTGCTAACGCGTG 62.153 66.667 14.98 1.19 39.65 5.34
106 107 3.490759 CCAGCTGCTAACGCGTGG 61.491 66.667 14.98 10.62 39.65 4.94
107 108 2.432456 CAGCTGCTAACGCGTGGA 60.432 61.111 14.98 0.34 39.65 4.02
108 109 1.811266 CAGCTGCTAACGCGTGGAT 60.811 57.895 14.98 0.00 39.65 3.41
109 110 1.811266 AGCTGCTAACGCGTGGATG 60.811 57.895 14.98 4.46 39.65 3.51
110 111 2.703409 CTGCTAACGCGTGGATGC 59.297 61.111 14.98 15.43 39.65 3.91
111 112 2.813179 CTGCTAACGCGTGGATGCC 61.813 63.158 14.98 0.00 39.65 4.40
112 113 2.511600 GCTAACGCGTGGATGCCT 60.512 61.111 14.98 0.00 0.00 4.75
113 114 2.106683 GCTAACGCGTGGATGCCTT 61.107 57.895 14.98 0.00 0.00 4.35
114 115 1.644786 GCTAACGCGTGGATGCCTTT 61.645 55.000 14.98 0.00 0.00 3.11
115 116 0.802494 CTAACGCGTGGATGCCTTTT 59.198 50.000 14.98 0.00 0.00 2.27
116 117 0.519519 TAACGCGTGGATGCCTTTTG 59.480 50.000 14.98 0.00 0.00 2.44
117 118 2.141122 AACGCGTGGATGCCTTTTGG 62.141 55.000 14.98 0.00 44.18 3.28
118 119 2.625823 CGCGTGGATGCCTTTTGGT 61.626 57.895 0.00 0.00 42.99 3.67
119 120 1.212751 GCGTGGATGCCTTTTGGTC 59.787 57.895 0.00 0.00 42.99 4.02
120 121 1.883021 CGTGGATGCCTTTTGGTCC 59.117 57.895 0.00 0.00 42.99 4.46
121 122 1.595093 CGTGGATGCCTTTTGGTCCC 61.595 60.000 0.00 0.00 42.99 4.46
122 123 1.304052 TGGATGCCTTTTGGTCCCG 60.304 57.895 0.00 0.00 42.99 5.14
123 124 2.052104 GGATGCCTTTTGGTCCCGG 61.052 63.158 0.00 0.00 42.99 5.73
124 125 1.304134 GATGCCTTTTGGTCCCGGT 60.304 57.895 0.00 0.00 42.99 5.28
125 126 0.898326 GATGCCTTTTGGTCCCGGTT 60.898 55.000 0.00 0.00 42.99 4.44
126 127 1.184970 ATGCCTTTTGGTCCCGGTTG 61.185 55.000 0.00 0.00 42.99 3.77
127 128 2.570284 GCCTTTTGGTCCCGGTTGG 61.570 63.158 0.00 0.00 42.99 3.77
128 129 1.152631 CCTTTTGGTCCCGGTTGGT 60.153 57.895 0.00 0.00 34.77 3.67
129 130 1.460273 CCTTTTGGTCCCGGTTGGTG 61.460 60.000 0.00 0.00 34.77 4.17
130 131 2.082629 CTTTTGGTCCCGGTTGGTGC 62.083 60.000 0.00 0.00 34.77 5.01
131 132 2.575455 TTTTGGTCCCGGTTGGTGCT 62.575 55.000 0.00 0.00 34.77 4.40
132 133 1.706995 TTTGGTCCCGGTTGGTGCTA 61.707 55.000 0.00 0.00 34.77 3.49
133 134 1.493854 TTGGTCCCGGTTGGTGCTAT 61.494 55.000 0.00 0.00 34.77 2.97
134 135 1.153229 GGTCCCGGTTGGTGCTATC 60.153 63.158 0.00 0.00 34.77 2.08
135 136 1.600107 GTCCCGGTTGGTGCTATCA 59.400 57.895 0.00 0.00 34.77 2.15
136 137 0.035820 GTCCCGGTTGGTGCTATCAA 60.036 55.000 0.00 0.00 34.77 2.57
137 138 0.035820 TCCCGGTTGGTGCTATCAAC 60.036 55.000 0.00 8.24 42.53 3.18
141 142 2.477880 GTTGGTGCTATCAACCGGG 58.522 57.895 6.32 0.00 38.71 5.73
142 143 0.035820 GTTGGTGCTATCAACCGGGA 60.036 55.000 6.32 0.00 38.71 5.14
143 144 0.035820 TTGGTGCTATCAACCGGGAC 60.036 55.000 6.32 0.00 0.00 4.46
144 145 1.153229 GGTGCTATCAACCGGGACC 60.153 63.158 6.32 0.00 34.61 4.46
145 146 1.600107 GTGCTATCAACCGGGACCA 59.400 57.895 6.32 0.00 0.00 4.02
146 147 0.035820 GTGCTATCAACCGGGACCAA 60.036 55.000 6.32 0.00 0.00 3.67
147 148 0.693622 TGCTATCAACCGGGACCAAA 59.306 50.000 6.32 0.00 0.00 3.28
148 149 1.339631 TGCTATCAACCGGGACCAAAG 60.340 52.381 6.32 0.00 0.00 2.77
149 150 2.017113 GCTATCAACCGGGACCAAAGG 61.017 57.143 6.32 0.00 0.00 3.11
150 151 0.034863 TATCAACCGGGACCAAAGGC 60.035 55.000 6.32 0.00 0.00 4.35
151 152 2.781431 ATCAACCGGGACCAAAGGCC 62.781 60.000 6.32 0.00 0.00 5.19
152 153 4.295199 AACCGGGACCAAAGGCCC 62.295 66.667 6.32 0.00 36.26 5.80
154 155 4.426313 CCGGGACCAAAGGCCCTC 62.426 72.222 0.00 0.00 37.05 4.30
155 156 3.330720 CGGGACCAAAGGCCCTCT 61.331 66.667 0.00 0.00 37.05 3.69
156 157 2.907179 CGGGACCAAAGGCCCTCTT 61.907 63.158 0.00 0.00 37.05 2.85
157 158 1.304464 GGGACCAAAGGCCCTCTTG 60.304 63.158 0.00 0.24 36.54 3.02
158 159 1.979155 GGACCAAAGGCCCTCTTGC 60.979 63.158 0.00 0.00 35.55 4.01
166 167 2.508436 GCCCTCTTGCCTAGGCTC 59.492 66.667 33.07 7.42 42.34 4.70
167 168 2.818132 CCCTCTTGCCTAGGCTCG 59.182 66.667 33.07 23.01 42.51 5.03
168 169 2.107953 CCTCTTGCCTAGGCTCGC 59.892 66.667 33.07 8.57 42.51 5.03
169 170 2.107953 CTCTTGCCTAGGCTCGCC 59.892 66.667 33.07 5.82 42.51 5.54
170 171 2.683572 TCTTGCCTAGGCTCGCCA 60.684 61.111 33.07 11.19 42.51 5.69
171 172 2.512515 CTTGCCTAGGCTCGCCAC 60.513 66.667 33.07 4.26 42.51 5.01
172 173 3.315142 CTTGCCTAGGCTCGCCACA 62.315 63.158 33.07 9.58 42.51 4.17
173 174 3.315142 TTGCCTAGGCTCGCCACAG 62.315 63.158 33.07 6.65 42.51 3.66
186 187 2.734723 CACAGCGACCACGTGGAG 60.735 66.667 40.21 30.66 41.98 3.86
187 188 2.910479 ACAGCGACCACGTGGAGA 60.910 61.111 40.21 0.00 41.98 3.71
188 189 2.430921 CAGCGACCACGTGGAGAC 60.431 66.667 40.21 25.95 41.98 3.36
189 190 3.681835 AGCGACCACGTGGAGACC 61.682 66.667 40.21 23.03 41.98 3.85
190 191 4.736896 GCGACCACGTGGAGACCC 62.737 72.222 40.21 20.37 41.98 4.46
191 192 3.299977 CGACCACGTGGAGACCCA 61.300 66.667 40.21 0.00 40.95 4.51
192 193 2.646175 CGACCACGTGGAGACCCAT 61.646 63.158 40.21 16.93 45.68 4.00
193 194 1.218316 GACCACGTGGAGACCCATC 59.782 63.158 40.21 21.39 45.68 3.51
194 195 1.229209 ACCACGTGGAGACCCATCT 60.229 57.895 40.21 12.44 45.68 2.90
195 196 1.219124 CCACGTGGAGACCCATCTG 59.781 63.158 31.31 0.00 45.68 2.90
196 197 1.544825 CCACGTGGAGACCCATCTGT 61.545 60.000 31.31 0.00 45.68 3.41
197 198 0.108615 CACGTGGAGACCCATCTGTC 60.109 60.000 7.95 0.00 45.68 3.51
198 199 1.258445 ACGTGGAGACCCATCTGTCC 61.258 60.000 0.00 0.00 45.68 4.02
199 200 1.908483 GTGGAGACCCATCTGTCCC 59.092 63.158 0.00 0.00 45.68 4.46
200 201 1.685765 TGGAGACCCATCTGTCCCG 60.686 63.158 0.00 0.00 37.58 5.14
201 202 2.435693 GGAGACCCATCTGTCCCGG 61.436 68.421 0.00 0.00 34.34 5.73
202 203 1.686110 GAGACCCATCTGTCCCGGT 60.686 63.158 0.00 0.00 34.34 5.28
203 204 1.229529 AGACCCATCTGTCCCGGTT 60.230 57.895 0.00 0.00 35.83 4.44
204 205 0.840722 AGACCCATCTGTCCCGGTTT 60.841 55.000 0.00 0.00 35.83 3.27
205 206 0.676782 GACCCATCTGTCCCGGTTTG 60.677 60.000 0.00 0.00 0.00 2.93
206 207 1.378762 CCCATCTGTCCCGGTTTGT 59.621 57.895 0.00 0.00 0.00 2.83
207 208 0.960364 CCCATCTGTCCCGGTTTGTG 60.960 60.000 0.00 0.00 0.00 3.33
208 209 0.250727 CCATCTGTCCCGGTTTGTGT 60.251 55.000 0.00 0.00 0.00 3.72
209 210 1.002659 CCATCTGTCCCGGTTTGTGTA 59.997 52.381 0.00 0.00 0.00 2.90
210 211 2.551287 CCATCTGTCCCGGTTTGTGTAA 60.551 50.000 0.00 0.00 0.00 2.41
211 212 2.536761 TCTGTCCCGGTTTGTGTAAG 57.463 50.000 0.00 0.00 0.00 2.34
212 213 2.040939 TCTGTCCCGGTTTGTGTAAGA 58.959 47.619 0.00 0.00 0.00 2.10
213 214 2.435069 TCTGTCCCGGTTTGTGTAAGAA 59.565 45.455 0.00 0.00 0.00 2.52
214 215 2.546789 CTGTCCCGGTTTGTGTAAGAAC 59.453 50.000 0.00 0.00 0.00 3.01
215 216 1.875514 GTCCCGGTTTGTGTAAGAACC 59.124 52.381 0.00 0.00 41.47 3.62
219 220 2.259266 GGTTTGTGTAAGAACCGGGA 57.741 50.000 6.32 0.00 36.31 5.14
220 221 1.875514 GGTTTGTGTAAGAACCGGGAC 59.124 52.381 6.32 0.00 36.31 4.46
221 222 2.486013 GGTTTGTGTAAGAACCGGGACT 60.486 50.000 6.32 0.73 36.31 3.85
222 223 3.244181 GGTTTGTGTAAGAACCGGGACTA 60.244 47.826 6.32 0.00 36.31 2.59
223 224 4.379652 GTTTGTGTAAGAACCGGGACTAA 58.620 43.478 6.32 0.00 0.00 2.24
224 225 4.686191 TTGTGTAAGAACCGGGACTAAA 57.314 40.909 6.32 0.00 0.00 1.85
225 226 4.261578 TGTGTAAGAACCGGGACTAAAG 57.738 45.455 6.32 0.00 0.00 1.85
226 227 3.007182 TGTGTAAGAACCGGGACTAAAGG 59.993 47.826 6.32 0.00 0.00 3.11
227 228 3.007290 GTGTAAGAACCGGGACTAAAGGT 59.993 47.826 6.32 0.00 40.50 3.50
228 229 4.220602 GTGTAAGAACCGGGACTAAAGGTA 59.779 45.833 6.32 0.00 37.26 3.08
229 230 5.025453 TGTAAGAACCGGGACTAAAGGTAT 58.975 41.667 6.32 0.00 37.26 2.73
230 231 6.096846 GTGTAAGAACCGGGACTAAAGGTATA 59.903 42.308 6.32 0.00 37.26 1.47
231 232 5.866159 AAGAACCGGGACTAAAGGTATAG 57.134 43.478 6.32 0.00 37.26 1.31
232 233 4.221530 AGAACCGGGACTAAAGGTATAGG 58.778 47.826 6.32 0.00 37.26 2.57
233 234 2.968271 ACCGGGACTAAAGGTATAGGG 58.032 52.381 6.32 0.00 36.34 3.53
234 235 1.622312 CCGGGACTAAAGGTATAGGGC 59.378 57.143 0.00 0.00 0.00 5.19
235 236 2.606378 CGGGACTAAAGGTATAGGGCT 58.394 52.381 0.00 0.00 0.00 5.19
236 237 2.970640 CGGGACTAAAGGTATAGGGCTT 59.029 50.000 0.00 0.00 0.00 4.35
237 238 3.390311 CGGGACTAAAGGTATAGGGCTTT 59.610 47.826 0.00 0.00 0.00 3.51
238 239 4.590222 CGGGACTAAAGGTATAGGGCTTTA 59.410 45.833 0.00 0.00 0.00 1.85
239 240 5.279356 CGGGACTAAAGGTATAGGGCTTTAG 60.279 48.000 1.97 1.97 42.08 1.85
241 242 6.784473 GGGACTAAAGGTATAGGGCTTTAGTA 59.216 42.308 6.31 0.00 46.28 1.82
242 243 7.256119 GGGACTAAAGGTATAGGGCTTTAGTAC 60.256 44.444 6.99 6.99 46.28 2.73
243 244 7.256119 GGACTAAAGGTATAGGGCTTTAGTACC 60.256 44.444 6.31 6.49 46.28 3.34
244 245 5.541953 AAAGGTATAGGGCTTTAGTACCG 57.458 43.478 0.00 0.00 39.74 4.02
245 246 4.459852 AGGTATAGGGCTTTAGTACCGA 57.540 45.455 0.00 0.00 39.74 4.69
246 247 4.148079 AGGTATAGGGCTTTAGTACCGAC 58.852 47.826 0.00 0.00 39.74 4.79
247 248 3.256879 GGTATAGGGCTTTAGTACCGACC 59.743 52.174 0.00 0.00 0.00 4.79
248 249 1.780503 TAGGGCTTTAGTACCGACCC 58.219 55.000 0.00 0.00 37.63 4.46
249 250 0.042281 AGGGCTTTAGTACCGACCCT 59.958 55.000 4.22 4.22 42.97 4.34
250 251 0.907486 GGGCTTTAGTACCGACCCTT 59.093 55.000 0.00 0.00 34.34 3.95
251 252 1.280133 GGGCTTTAGTACCGACCCTTT 59.720 52.381 0.00 0.00 34.34 3.11
252 253 2.501316 GGGCTTTAGTACCGACCCTTTA 59.499 50.000 0.00 0.00 34.34 1.85
253 254 3.431346 GGGCTTTAGTACCGACCCTTTAG 60.431 52.174 0.00 0.00 34.34 1.85
254 255 3.196469 GGCTTTAGTACCGACCCTTTAGT 59.804 47.826 0.00 0.00 0.00 2.24
255 256 4.428209 GCTTTAGTACCGACCCTTTAGTC 58.572 47.826 0.00 0.00 0.00 2.59
256 257 4.679106 GCTTTAGTACCGACCCTTTAGTCC 60.679 50.000 0.00 0.00 32.91 3.85
257 258 1.857965 AGTACCGACCCTTTAGTCCC 58.142 55.000 0.00 0.00 32.91 4.46
258 259 0.457443 GTACCGACCCTTTAGTCCCG 59.543 60.000 0.00 0.00 32.91 5.14
259 260 0.684153 TACCGACCCTTTAGTCCCGG 60.684 60.000 0.00 0.00 42.30 5.73
260 261 1.986210 CCGACCCTTTAGTCCCGGT 60.986 63.158 0.00 0.00 32.91 5.28
261 262 1.547472 CCGACCCTTTAGTCCCGGTT 61.547 60.000 0.00 0.00 32.91 4.44
262 263 0.108472 CGACCCTTTAGTCCCGGTTC 60.108 60.000 0.00 0.00 32.91 3.62
263 264 1.273759 GACCCTTTAGTCCCGGTTCT 58.726 55.000 0.00 0.15 0.00 3.01
264 265 1.206610 GACCCTTTAGTCCCGGTTCTC 59.793 57.143 0.00 0.00 0.00 2.87
265 266 0.540454 CCCTTTAGTCCCGGTTCTCC 59.460 60.000 0.00 0.00 0.00 3.71
266 267 1.272807 CCTTTAGTCCCGGTTCTCCA 58.727 55.000 0.00 0.00 0.00 3.86
267 268 1.626825 CCTTTAGTCCCGGTTCTCCAA 59.373 52.381 0.00 0.00 0.00 3.53
268 269 2.614734 CCTTTAGTCCCGGTTCTCCAAC 60.615 54.545 0.00 0.00 0.00 3.77
275 276 3.153825 GGTTCTCCAACCGGGACA 58.846 61.111 6.32 0.00 43.00 4.02
276 277 1.452801 GGTTCTCCAACCGGGACAA 59.547 57.895 6.32 0.00 43.00 3.18
277 278 0.179012 GGTTCTCCAACCGGGACAAA 60.179 55.000 6.32 0.00 43.00 2.83
278 279 1.546998 GGTTCTCCAACCGGGACAAAT 60.547 52.381 6.32 0.00 43.00 2.32
279 280 1.539827 GTTCTCCAACCGGGACAAATG 59.460 52.381 6.32 0.00 42.15 2.32
280 281 0.037590 TCTCCAACCGGGACAAATGG 59.962 55.000 6.32 4.34 42.15 3.16
281 282 0.965363 CTCCAACCGGGACAAATGGG 60.965 60.000 6.32 0.00 42.15 4.00
282 283 2.645192 CCAACCGGGACAAATGGGC 61.645 63.158 6.32 0.00 40.01 5.36
283 284 2.283604 AACCGGGACAAATGGGCC 60.284 61.111 6.32 0.00 0.00 5.80
284 285 2.852281 AACCGGGACAAATGGGCCT 61.852 57.895 6.32 0.00 0.00 5.19
285 286 2.037208 CCGGGACAAATGGGCCTT 59.963 61.111 4.53 0.00 0.00 4.35
286 287 1.304952 CCGGGACAAATGGGCCTTA 59.695 57.895 4.53 0.00 0.00 2.69
287 288 1.035385 CCGGGACAAATGGGCCTTAC 61.035 60.000 4.53 0.00 0.00 2.34
288 289 1.373590 CGGGACAAATGGGCCTTACG 61.374 60.000 4.53 0.00 0.00 3.18
289 290 0.034863 GGGACAAATGGGCCTTACGA 60.035 55.000 4.53 0.00 0.00 3.43
290 291 1.614850 GGGACAAATGGGCCTTACGAA 60.615 52.381 4.53 0.00 0.00 3.85
291 292 1.471287 GGACAAATGGGCCTTACGAAC 59.529 52.381 4.53 0.00 0.00 3.95
292 293 1.471287 GACAAATGGGCCTTACGAACC 59.529 52.381 4.53 0.00 0.00 3.62
293 294 0.450184 CAAATGGGCCTTACGAACCG 59.550 55.000 4.53 0.00 0.00 4.44
294 295 0.678684 AAATGGGCCTTACGAACCGG 60.679 55.000 4.53 0.00 0.00 5.28
295 296 2.546114 AATGGGCCTTACGAACCGGG 62.546 60.000 6.32 0.00 0.00 5.73
296 297 3.393106 GGGCCTTACGAACCGGGA 61.393 66.667 6.32 0.00 0.00 5.14
297 298 2.125391 GGCCTTACGAACCGGGAC 60.125 66.667 6.32 0.00 0.00 4.46
298 299 2.658422 GCCTTACGAACCGGGACA 59.342 61.111 6.32 0.00 0.00 4.02
299 300 1.004679 GCCTTACGAACCGGGACAA 60.005 57.895 6.32 0.00 0.00 3.18
300 301 0.603439 GCCTTACGAACCGGGACAAA 60.603 55.000 6.32 0.00 0.00 2.83
301 302 1.947212 GCCTTACGAACCGGGACAAAT 60.947 52.381 6.32 0.00 0.00 2.32
302 303 1.735571 CCTTACGAACCGGGACAAATG 59.264 52.381 6.32 0.00 0.00 2.32
303 304 1.735571 CTTACGAACCGGGACAAATGG 59.264 52.381 6.32 0.00 0.00 3.16
304 305 0.674269 TACGAACCGGGACAAATGGC 60.674 55.000 6.32 0.00 0.00 4.40
305 306 2.696759 CGAACCGGGACAAATGGCC 61.697 63.158 6.32 0.00 44.61 5.36
316 317 5.420725 GGACAAATGGCCCTTTTTCTATT 57.579 39.130 16.22 0.00 37.19 1.73
317 318 6.538945 GGACAAATGGCCCTTTTTCTATTA 57.461 37.500 16.22 0.00 37.19 0.98
318 319 6.573434 GGACAAATGGCCCTTTTTCTATTAG 58.427 40.000 16.22 1.81 37.19 1.73
319 320 6.154534 GGACAAATGGCCCTTTTTCTATTAGT 59.845 38.462 16.22 4.58 37.19 2.24
320 321 6.935167 ACAAATGGCCCTTTTTCTATTAGTG 58.065 36.000 2.87 0.00 0.00 2.74
321 322 5.598416 AATGGCCCTTTTTCTATTAGTGC 57.402 39.130 0.00 0.00 0.00 4.40
322 323 4.040936 TGGCCCTTTTTCTATTAGTGCA 57.959 40.909 0.00 0.00 0.00 4.57
323 324 4.411927 TGGCCCTTTTTCTATTAGTGCAA 58.588 39.130 0.00 0.00 0.00 4.08
324 325 4.462483 TGGCCCTTTTTCTATTAGTGCAAG 59.538 41.667 0.00 0.00 0.00 4.01
325 326 4.142160 GGCCCTTTTTCTATTAGTGCAAGG 60.142 45.833 0.00 9.06 0.00 3.61
326 327 4.678044 GCCCTTTTTCTATTAGTGCAAGGC 60.678 45.833 0.00 0.00 0.00 4.35
327 328 4.438744 CCCTTTTTCTATTAGTGCAAGGCG 60.439 45.833 0.00 0.00 0.00 5.52
328 329 3.757745 TTTTCTATTAGTGCAAGGCGC 57.242 42.857 0.00 0.00 42.89 6.53
329 330 1.663695 TTCTATTAGTGCAAGGCGCC 58.336 50.000 21.89 21.89 40.23 6.53
330 331 0.539518 TCTATTAGTGCAAGGCGCCA 59.460 50.000 31.54 4.11 40.23 5.69
331 332 0.940126 CTATTAGTGCAAGGCGCCAG 59.060 55.000 31.54 21.95 40.23 4.85
332 333 0.539518 TATTAGTGCAAGGCGCCAGA 59.460 50.000 31.54 5.83 40.23 3.86
338 339 2.964174 CAAGGCGCCAGAATTGCA 59.036 55.556 31.54 0.00 0.00 4.08
341 342 0.966875 AAGGCGCCAGAATTGCATGA 60.967 50.000 31.54 0.00 0.00 3.07
344 345 0.524816 GCGCCAGAATTGCATGACAG 60.525 55.000 0.00 0.00 0.00 3.51
362 363 1.216175 CAGGTTGTCCCCATCCATGAT 59.784 52.381 0.00 0.00 33.55 2.45
363 364 1.216175 AGGTTGTCCCCATCCATGATG 59.784 52.381 0.00 0.00 39.52 3.07
448 452 6.150641 CCTTCATCATCATCACAACAAAGACT 59.849 38.462 0.00 0.00 0.00 3.24
473 477 0.891373 CCAGATGTAGATCCCGCGAT 59.109 55.000 8.23 0.00 0.00 4.58
486 490 1.787155 CCCGCGATTAGAGATCAAACG 59.213 52.381 8.23 0.00 0.00 3.60
514 519 1.139058 AGTCGTTCCATGGGCTCATAC 59.861 52.381 13.02 3.47 31.33 2.39
515 520 0.468226 TCGTTCCATGGGCTCATACC 59.532 55.000 13.02 0.00 31.33 2.73
516 521 0.180171 CGTTCCATGGGCTCATACCA 59.820 55.000 13.02 0.00 43.22 3.25
522 527 1.212688 CATGGGCTCATACCAGGAACA 59.787 52.381 0.00 0.00 42.09 3.18
524 529 1.922447 TGGGCTCATACCAGGAACATT 59.078 47.619 0.00 0.00 33.23 2.71
526 531 3.525609 TGGGCTCATACCAGGAACATTAA 59.474 43.478 0.00 0.00 33.23 1.40
538 543 5.109903 CAGGAACATTAAACCTACCTCTCG 58.890 45.833 0.00 0.00 32.35 4.04
539 544 5.021458 AGGAACATTAAACCTACCTCTCGA 58.979 41.667 0.00 0.00 31.78 4.04
556 561 5.011125 CCTCTCGAACAGATTACCATGGTAT 59.989 44.000 25.12 14.84 0.00 2.73
558 563 6.280643 TCTCGAACAGATTACCATGGTATTG 58.719 40.000 25.12 22.67 0.00 1.90
560 565 6.826668 TCGAACAGATTACCATGGTATTGAT 58.173 36.000 25.12 15.70 0.00 2.57
561 566 7.279615 TCGAACAGATTACCATGGTATTGATT 58.720 34.615 25.12 15.22 0.00 2.57
562 567 7.773224 TCGAACAGATTACCATGGTATTGATTT 59.227 33.333 25.12 15.17 0.00 2.17
608 613 4.451096 TCACGAATTCTGTAACTTTGAGGC 59.549 41.667 3.52 0.00 0.00 4.70
613 618 3.026630 TCTGTAACTTTGAGGCAGTCG 57.973 47.619 0.00 0.00 0.00 4.18
644 649 6.106673 AGATGGTTTACAACGACTTGATAGG 58.893 40.000 0.00 0.00 0.00 2.57
646 651 5.232463 TGGTTTACAACGACTTGATAGGAC 58.768 41.667 0.00 0.00 0.00 3.85
650 655 6.682423 TTACAACGACTTGATAGGACGATA 57.318 37.500 0.00 0.00 32.53 2.92
656 661 2.293677 ACTTGATAGGACGATAGCACCG 59.706 50.000 0.00 0.00 40.10 4.94
674 679 2.342650 GCACACGGTTCATGGCCAT 61.343 57.895 14.09 14.09 0.00 4.40
677 682 2.120909 CACGGTTCATGGCCATCCC 61.121 63.158 17.61 15.01 0.00 3.85
688 693 3.857157 TGGCCATCCCAAACTATACTC 57.143 47.619 0.00 0.00 41.82 2.59
689 694 3.393687 TGGCCATCCCAAACTATACTCT 58.606 45.455 0.00 0.00 41.82 3.24
690 695 3.785887 TGGCCATCCCAAACTATACTCTT 59.214 43.478 0.00 0.00 41.82 2.85
691 696 4.141482 TGGCCATCCCAAACTATACTCTTC 60.141 45.833 0.00 0.00 41.82 2.87
692 697 4.103311 GGCCATCCCAAACTATACTCTTCT 59.897 45.833 0.00 0.00 0.00 2.85
693 698 5.398012 GGCCATCCCAAACTATACTCTTCTT 60.398 44.000 0.00 0.00 0.00 2.52
695 700 6.603599 GCCATCCCAAACTATACTCTTCTTTT 59.396 38.462 0.00 0.00 0.00 2.27
696 701 7.122799 GCCATCCCAAACTATACTCTTCTTTTT 59.877 37.037 0.00 0.00 0.00 1.94
725 730 6.647334 TTGAAAACAGGATTACAATCTGCA 57.353 33.333 2.19 0.00 35.73 4.41
726 731 6.258230 TGAAAACAGGATTACAATCTGCAG 57.742 37.500 7.63 7.63 35.73 4.41
727 732 4.708726 AAACAGGATTACAATCTGCAGC 57.291 40.909 9.47 0.00 35.73 5.25
728 733 3.641434 ACAGGATTACAATCTGCAGCT 57.359 42.857 9.47 0.00 35.73 4.24
729 734 4.760530 ACAGGATTACAATCTGCAGCTA 57.239 40.909 9.47 0.00 35.73 3.32
730 735 5.102953 ACAGGATTACAATCTGCAGCTAA 57.897 39.130 9.47 2.33 35.73 3.09
731 736 5.500234 ACAGGATTACAATCTGCAGCTAAA 58.500 37.500 9.47 0.00 35.73 1.85
732 737 5.945784 ACAGGATTACAATCTGCAGCTAAAA 59.054 36.000 9.47 0.00 35.73 1.52
733 738 6.094603 ACAGGATTACAATCTGCAGCTAAAAG 59.905 38.462 9.47 0.00 35.73 2.27
734 739 6.317140 CAGGATTACAATCTGCAGCTAAAAGA 59.683 38.462 9.47 0.00 35.73 2.52
735 740 6.886459 AGGATTACAATCTGCAGCTAAAAGAA 59.114 34.615 9.47 0.00 35.73 2.52
736 741 6.969473 GGATTACAATCTGCAGCTAAAAGAAC 59.031 38.462 9.47 0.00 35.73 3.01
737 742 7.148171 GGATTACAATCTGCAGCTAAAAGAACT 60.148 37.037 9.47 0.00 35.73 3.01
738 743 5.368256 ACAATCTGCAGCTAAAAGAACTG 57.632 39.130 9.47 0.00 34.48 3.16
747 752 5.862811 CAGCTAAAAGAACTGCTACATCAC 58.137 41.667 0.00 0.00 34.10 3.06
748 753 5.641209 CAGCTAAAAGAACTGCTACATCACT 59.359 40.000 0.00 0.00 34.10 3.41
772 777 4.137543 GGTAAAGCTACTGGGATCCAATG 58.862 47.826 15.23 5.20 30.80 2.82
785 796 0.255604 TCCAATGGCATCATCACCGT 59.744 50.000 0.00 0.00 32.24 4.83
789 800 0.035152 ATGGCATCATCACCGTGTGT 60.035 50.000 0.00 0.00 34.79 3.72
797 808 1.469703 CATCACCGTGTGTGCATCATT 59.530 47.619 0.00 0.00 45.03 2.57
815 826 2.620251 TTCGGCTTGATATCACCAGG 57.380 50.000 4.48 0.00 0.00 4.45
825 836 6.014156 GCTTGATATCACCAGGGACTTAGTAT 60.014 42.308 4.48 0.00 34.60 2.12
834 845 7.232941 TCACCAGGGACTTAGTATAATAAGCTC 59.767 40.741 17.60 13.83 34.60 4.09
873 884 7.068103 TGTTAACATACTGGCCTAAATTGGATG 59.932 37.037 3.59 2.43 0.00 3.51
878 893 4.781934 ACTGGCCTAAATTGGATGTAGAC 58.218 43.478 3.32 0.00 0.00 2.59
880 895 4.780815 TGGCCTAAATTGGATGTAGACAG 58.219 43.478 3.32 0.00 0.00 3.51
882 897 5.059833 GGCCTAAATTGGATGTAGACAGAG 58.940 45.833 0.00 0.00 0.00 3.35
898 917 8.462811 TGTAGACAGAGATATGAACAAGAACTC 58.537 37.037 0.00 0.00 0.00 3.01
903 922 6.534436 CAGAGATATGAACAAGAACTCACCTG 59.466 42.308 0.00 0.00 0.00 4.00
921 940 2.899256 CCTGCCTCCAAATCCAAAAGAA 59.101 45.455 0.00 0.00 0.00 2.52
972 999 9.401496 AGGACTAGTTTCTACCTCTATCTCTAT 57.599 37.037 0.00 0.00 0.00 1.98
1008 1035 5.140747 AGATCCAAGTCACAGTGTAGAAC 57.859 43.478 0.00 0.00 0.00 3.01
1016 1043 7.063898 CCAAGTCACAGTGTAGAACAGAATATG 59.936 40.741 0.00 0.00 0.00 1.78
1031 1058 2.928801 ATATGCATAGCCCACGACAA 57.071 45.000 12.79 0.00 0.00 3.18
1065 1095 1.557443 CGCCGGCCGTATTCATCTTC 61.557 60.000 26.12 0.00 0.00 2.87
1066 1096 0.249911 GCCGGCCGTATTCATCTTCT 60.250 55.000 26.12 0.00 0.00 2.85
1867 1953 3.642503 TTCATCCCCGCCACCGTT 61.643 61.111 0.00 0.00 0.00 4.44
1896 1984 0.037590 AGTCCAAAATACCAGCGCCA 59.962 50.000 2.29 0.00 0.00 5.69
2104 2195 3.492353 CCATGGATGGCGGGGAGT 61.492 66.667 5.56 0.00 41.75 3.85
2171 2284 0.110644 CTTTTCGCTGGAACACGAGC 60.111 55.000 0.00 0.00 41.15 5.03
2333 2665 3.932710 TGCTACGTCTGTGGATGATTTTC 59.067 43.478 0.00 0.00 33.06 2.29
2676 3184 4.363990 CGGCGCCTATCGATGCCT 62.364 66.667 26.68 0.00 45.36 4.75
2678 3186 1.292223 GGCGCCTATCGATGCCTTA 59.708 57.895 22.15 0.00 44.16 2.69
2679 3187 0.108138 GGCGCCTATCGATGCCTTAT 60.108 55.000 22.15 0.00 44.16 1.73
2680 3188 1.676014 GGCGCCTATCGATGCCTTATT 60.676 52.381 22.15 0.00 44.16 1.40
2681 3189 2.076863 GCGCCTATCGATGCCTTATTT 58.923 47.619 8.54 0.00 41.67 1.40
2682 3190 2.484264 GCGCCTATCGATGCCTTATTTT 59.516 45.455 8.54 0.00 41.67 1.82
2683 3191 3.058224 GCGCCTATCGATGCCTTATTTTT 60.058 43.478 8.54 0.00 41.67 1.94
2684 3192 4.153475 GCGCCTATCGATGCCTTATTTTTA 59.847 41.667 8.54 0.00 41.67 1.52
2685 3193 5.671329 GCGCCTATCGATGCCTTATTTTTAG 60.671 44.000 8.54 0.00 41.67 1.85
2782 3290 9.832445 ATATATATATGAGTTAAAAGCACCGGG 57.168 33.333 6.32 0.00 0.00 5.73
2783 3291 2.871096 ATGAGTTAAAAGCACCGGGA 57.129 45.000 6.32 0.00 0.00 5.14
2784 3292 2.178912 TGAGTTAAAAGCACCGGGAG 57.821 50.000 6.32 0.00 0.00 4.30
2785 3293 1.418637 TGAGTTAAAAGCACCGGGAGT 59.581 47.619 6.32 0.00 0.00 3.85
2786 3294 2.074576 GAGTTAAAAGCACCGGGAGTC 58.925 52.381 6.32 0.00 0.00 3.36
2787 3295 1.162698 GTTAAAAGCACCGGGAGTCC 58.837 55.000 6.32 0.00 0.00 3.85
2788 3296 1.061546 TTAAAAGCACCGGGAGTCCT 58.938 50.000 9.58 0.00 0.00 3.85
2789 3297 1.941377 TAAAAGCACCGGGAGTCCTA 58.059 50.000 9.58 0.00 0.00 2.94
2790 3298 0.323957 AAAAGCACCGGGAGTCCTAC 59.676 55.000 9.58 0.00 0.00 3.18
2791 3299 0.834687 AAAGCACCGGGAGTCCTACA 60.835 55.000 9.58 0.00 0.00 2.74
2792 3300 1.542187 AAGCACCGGGAGTCCTACAC 61.542 60.000 9.58 0.00 0.00 2.90
2793 3301 3.015312 GCACCGGGAGTCCTACACC 62.015 68.421 9.58 0.00 0.00 4.16
2794 3302 1.305046 CACCGGGAGTCCTACACCT 60.305 63.158 9.58 0.00 0.00 4.00
2795 3303 0.903454 CACCGGGAGTCCTACACCTT 60.903 60.000 9.58 0.00 0.00 3.50
2796 3304 0.903454 ACCGGGAGTCCTACACCTTG 60.903 60.000 9.58 0.00 0.00 3.61
2797 3305 0.903454 CCGGGAGTCCTACACCTTGT 60.903 60.000 9.58 0.00 0.00 3.16
2798 3306 0.531200 CGGGAGTCCTACACCTTGTC 59.469 60.000 9.58 0.00 0.00 3.18
2799 3307 0.903236 GGGAGTCCTACACCTTGTCC 59.097 60.000 9.58 0.00 0.00 4.02
2800 3308 0.531200 GGAGTCCTACACCTTGTCCG 59.469 60.000 0.41 0.00 0.00 4.79
2801 3309 1.542492 GAGTCCTACACCTTGTCCGA 58.458 55.000 0.00 0.00 0.00 4.55
2802 3310 1.473278 GAGTCCTACACCTTGTCCGAG 59.527 57.143 0.00 0.00 0.00 4.63
2803 3311 1.075050 AGTCCTACACCTTGTCCGAGA 59.925 52.381 0.00 0.00 0.00 4.04
2804 3312 2.100989 GTCCTACACCTTGTCCGAGAT 58.899 52.381 0.00 0.00 0.00 2.75
2805 3313 2.100197 TCCTACACCTTGTCCGAGATG 58.900 52.381 0.00 0.00 0.00 2.90
2806 3314 1.825474 CCTACACCTTGTCCGAGATGT 59.175 52.381 0.00 0.00 0.00 3.06
2807 3315 2.417379 CCTACACCTTGTCCGAGATGTG 60.417 54.545 0.00 0.00 0.00 3.21
2808 3316 1.338107 ACACCTTGTCCGAGATGTGA 58.662 50.000 0.00 0.00 0.00 3.58
2809 3317 1.902508 ACACCTTGTCCGAGATGTGAT 59.097 47.619 0.00 0.00 0.00 3.06
2810 3318 2.274437 CACCTTGTCCGAGATGTGATG 58.726 52.381 0.00 0.00 0.00 3.07
2811 3319 2.094026 CACCTTGTCCGAGATGTGATGA 60.094 50.000 0.00 0.00 0.00 2.92
2812 3320 2.768527 ACCTTGTCCGAGATGTGATGAT 59.231 45.455 0.00 0.00 0.00 2.45
2813 3321 3.198635 ACCTTGTCCGAGATGTGATGATT 59.801 43.478 0.00 0.00 0.00 2.57
2814 3322 4.194640 CCTTGTCCGAGATGTGATGATTT 58.805 43.478 0.00 0.00 0.00 2.17
2815 3323 5.104941 ACCTTGTCCGAGATGTGATGATTTA 60.105 40.000 0.00 0.00 0.00 1.40
2816 3324 5.464722 CCTTGTCCGAGATGTGATGATTTAG 59.535 44.000 0.00 0.00 0.00 1.85
2817 3325 5.598416 TGTCCGAGATGTGATGATTTAGT 57.402 39.130 0.00 0.00 0.00 2.24
2818 3326 5.592054 TGTCCGAGATGTGATGATTTAGTC 58.408 41.667 0.00 0.00 0.00 2.59
2819 3327 4.985409 GTCCGAGATGTGATGATTTAGTCC 59.015 45.833 0.00 0.00 0.00 3.85
2820 3328 4.895889 TCCGAGATGTGATGATTTAGTCCT 59.104 41.667 0.00 0.00 0.00 3.85
2821 3329 6.016192 GTCCGAGATGTGATGATTTAGTCCTA 60.016 42.308 0.00 0.00 0.00 2.94
2822 3330 6.207614 TCCGAGATGTGATGATTTAGTCCTAG 59.792 42.308 0.00 0.00 0.00 3.02
2823 3331 6.207614 CCGAGATGTGATGATTTAGTCCTAGA 59.792 42.308 0.00 0.00 0.00 2.43
2824 3332 7.255625 CCGAGATGTGATGATTTAGTCCTAGAA 60.256 40.741 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.073768 GTGTTAGCTAGCTAATAGAGAGAAGTG 58.926 40.741 33.67 0.00 40.18 3.16
1 2 7.229907 GGTGTTAGCTAGCTAATAGAGAGAAGT 59.770 40.741 33.67 4.62 40.18 3.01
2 3 7.308951 GGGTGTTAGCTAGCTAATAGAGAGAAG 60.309 44.444 33.67 0.00 40.18 2.85
3 4 6.490721 GGGTGTTAGCTAGCTAATAGAGAGAA 59.509 42.308 33.67 12.84 40.18 2.87
4 5 6.005198 GGGTGTTAGCTAGCTAATAGAGAGA 58.995 44.000 33.67 11.84 40.18 3.10
5 6 6.007703 AGGGTGTTAGCTAGCTAATAGAGAG 58.992 44.000 33.67 0.00 40.18 3.20
6 7 5.954757 AGGGTGTTAGCTAGCTAATAGAGA 58.045 41.667 33.67 13.26 40.18 3.10
7 8 7.762588 TTAGGGTGTTAGCTAGCTAATAGAG 57.237 40.000 33.67 0.00 40.18 2.43
8 9 8.722622 ATTTAGGGTGTTAGCTAGCTAATAGA 57.277 34.615 33.67 19.60 40.18 1.98
11 12 9.557061 GTTAATTTAGGGTGTTAGCTAGCTAAT 57.443 33.333 33.67 22.18 40.18 1.73
12 13 7.989170 GGTTAATTTAGGGTGTTAGCTAGCTAA 59.011 37.037 29.22 29.22 36.31 3.09
13 14 7.419403 GGGTTAATTTAGGGTGTTAGCTAGCTA 60.419 40.741 20.67 20.67 0.00 3.32
14 15 6.354938 GGTTAATTTAGGGTGTTAGCTAGCT 58.645 40.000 23.12 23.12 0.00 3.32
15 16 5.530171 GGGTTAATTTAGGGTGTTAGCTAGC 59.470 44.000 6.62 6.62 0.00 3.42
16 17 6.060136 GGGGTTAATTTAGGGTGTTAGCTAG 58.940 44.000 0.00 0.00 0.00 3.42
17 18 5.103982 GGGGGTTAATTTAGGGTGTTAGCTA 60.104 44.000 0.00 0.00 0.00 3.32
18 19 4.325579 GGGGGTTAATTTAGGGTGTTAGCT 60.326 45.833 0.00 0.00 0.00 3.32
19 20 3.956199 GGGGGTTAATTTAGGGTGTTAGC 59.044 47.826 0.00 0.00 0.00 3.09
38 39 0.545787 GGTTTAGGGGGTTTTGGGGG 60.546 60.000 0.00 0.00 0.00 5.40
39 40 0.191314 TGGTTTAGGGGGTTTTGGGG 59.809 55.000 0.00 0.00 0.00 4.96
40 41 1.344065 GTGGTTTAGGGGGTTTTGGG 58.656 55.000 0.00 0.00 0.00 4.12
41 42 1.344065 GGTGGTTTAGGGGGTTTTGG 58.656 55.000 0.00 0.00 0.00 3.28
42 43 2.089600 TGGTGGTTTAGGGGGTTTTG 57.910 50.000 0.00 0.00 0.00 2.44
43 44 2.453212 AGATGGTGGTTTAGGGGGTTTT 59.547 45.455 0.00 0.00 0.00 2.43
44 45 2.078611 AGATGGTGGTTTAGGGGGTTT 58.921 47.619 0.00 0.00 0.00 3.27
45 46 1.768265 AGATGGTGGTTTAGGGGGTT 58.232 50.000 0.00 0.00 0.00 4.11
46 47 1.768265 AAGATGGTGGTTTAGGGGGT 58.232 50.000 0.00 0.00 0.00 4.95
47 48 2.042433 TGAAAGATGGTGGTTTAGGGGG 59.958 50.000 0.00 0.00 0.00 5.40
48 49 3.449746 TGAAAGATGGTGGTTTAGGGG 57.550 47.619 0.00 0.00 0.00 4.79
49 50 5.799827 TTTTGAAAGATGGTGGTTTAGGG 57.200 39.130 0.00 0.00 0.00 3.53
72 73 1.959282 CTGGCAGGAGCTGAAGTTTTT 59.041 47.619 6.61 0.00 41.70 1.94
73 74 1.613836 CTGGCAGGAGCTGAAGTTTT 58.386 50.000 6.61 0.00 41.70 2.43
74 75 0.892814 GCTGGCAGGAGCTGAAGTTT 60.893 55.000 17.64 0.00 41.70 2.66
75 76 1.303155 GCTGGCAGGAGCTGAAGTT 60.303 57.895 17.64 0.00 41.70 2.66
76 77 2.350514 GCTGGCAGGAGCTGAAGT 59.649 61.111 17.64 0.00 41.70 3.01
88 89 4.152625 CACGCGTTAGCAGCTGGC 62.153 66.667 17.12 8.89 45.49 4.85
89 90 3.490759 CCACGCGTTAGCAGCTGG 61.491 66.667 17.12 0.11 45.49 4.85
90 91 1.811266 ATCCACGCGTTAGCAGCTG 60.811 57.895 10.22 10.11 45.49 4.24
91 92 1.811266 CATCCACGCGTTAGCAGCT 60.811 57.895 10.22 0.00 45.49 4.24
92 93 2.703409 CATCCACGCGTTAGCAGC 59.297 61.111 10.22 0.00 45.49 5.25
93 94 2.703409 GCATCCACGCGTTAGCAG 59.297 61.111 10.22 0.00 45.49 4.24
94 95 2.796483 AAGGCATCCACGCGTTAGCA 62.796 55.000 10.22 0.00 45.49 3.49
95 96 1.644786 AAAGGCATCCACGCGTTAGC 61.645 55.000 10.22 11.39 38.95 3.09
96 97 0.802494 AAAAGGCATCCACGCGTTAG 59.198 50.000 10.22 3.86 38.95 2.34
97 98 0.519519 CAAAAGGCATCCACGCGTTA 59.480 50.000 10.22 0.00 38.95 3.18
98 99 1.285641 CAAAAGGCATCCACGCGTT 59.714 52.632 10.22 0.00 41.47 4.84
99 100 2.625823 CCAAAAGGCATCCACGCGT 61.626 57.895 5.58 5.58 0.00 6.01
100 101 2.179018 CCAAAAGGCATCCACGCG 59.821 61.111 3.53 3.53 0.00 6.01
101 102 1.212751 GACCAAAAGGCATCCACGC 59.787 57.895 0.00 0.00 0.00 5.34
102 103 1.595093 GGGACCAAAAGGCATCCACG 61.595 60.000 0.00 0.00 32.45 4.94
103 104 1.595093 CGGGACCAAAAGGCATCCAC 61.595 60.000 0.00 0.00 32.45 4.02
104 105 1.304052 CGGGACCAAAAGGCATCCA 60.304 57.895 0.00 0.00 32.45 3.41
105 106 2.052104 CCGGGACCAAAAGGCATCC 61.052 63.158 0.00 0.00 0.00 3.51
106 107 0.898326 AACCGGGACCAAAAGGCATC 60.898 55.000 6.32 0.00 0.00 3.91
107 108 1.155155 AACCGGGACCAAAAGGCAT 59.845 52.632 6.32 0.00 0.00 4.40
108 109 1.830408 CAACCGGGACCAAAAGGCA 60.830 57.895 6.32 0.00 0.00 4.75
109 110 2.570284 CCAACCGGGACCAAAAGGC 61.570 63.158 6.32 0.00 40.01 4.35
110 111 1.152631 ACCAACCGGGACCAAAAGG 60.153 57.895 6.32 0.00 41.15 3.11
111 112 2.037871 CACCAACCGGGACCAAAAG 58.962 57.895 6.32 0.00 41.15 2.27
112 113 2.128507 GCACCAACCGGGACCAAAA 61.129 57.895 6.32 0.00 41.15 2.44
113 114 1.706995 TAGCACCAACCGGGACCAAA 61.707 55.000 6.32 0.00 41.15 3.28
114 115 1.493854 ATAGCACCAACCGGGACCAA 61.494 55.000 6.32 0.00 41.15 3.67
115 116 1.906105 GATAGCACCAACCGGGACCA 61.906 60.000 6.32 0.00 41.15 4.02
116 117 1.153229 GATAGCACCAACCGGGACC 60.153 63.158 6.32 0.00 41.15 4.46
117 118 0.035820 TTGATAGCACCAACCGGGAC 60.036 55.000 6.32 0.00 41.15 4.46
118 119 0.035820 GTTGATAGCACCAACCGGGA 60.036 55.000 6.32 0.00 41.15 5.14
119 120 2.477880 GTTGATAGCACCAACCGGG 58.522 57.895 6.32 0.00 44.81 5.73
123 124 0.035820 TCCCGGTTGATAGCACCAAC 60.036 55.000 0.00 7.17 42.18 3.77
124 125 0.035820 GTCCCGGTTGATAGCACCAA 60.036 55.000 0.00 0.00 0.00 3.67
125 126 1.600107 GTCCCGGTTGATAGCACCA 59.400 57.895 0.00 0.00 0.00 4.17
126 127 1.153229 GGTCCCGGTTGATAGCACC 60.153 63.158 0.00 0.00 0.00 5.01
127 128 0.035820 TTGGTCCCGGTTGATAGCAC 60.036 55.000 0.00 0.00 0.00 4.40
128 129 0.693622 TTTGGTCCCGGTTGATAGCA 59.306 50.000 0.00 0.00 0.00 3.49
129 130 1.379527 CTTTGGTCCCGGTTGATAGC 58.620 55.000 0.00 0.00 0.00 2.97
130 131 2.017113 GCCTTTGGTCCCGGTTGATAG 61.017 57.143 0.00 0.00 0.00 2.08
131 132 0.034863 GCCTTTGGTCCCGGTTGATA 60.035 55.000 0.00 0.00 0.00 2.15
132 133 1.304134 GCCTTTGGTCCCGGTTGAT 60.304 57.895 0.00 0.00 0.00 2.57
133 134 2.114411 GCCTTTGGTCCCGGTTGA 59.886 61.111 0.00 0.00 0.00 3.18
134 135 2.989253 GGCCTTTGGTCCCGGTTG 60.989 66.667 0.00 0.00 0.00 3.77
135 136 4.295199 GGGCCTTTGGTCCCGGTT 62.295 66.667 0.84 0.00 42.67 4.44
141 142 3.686760 GCAAGAGGGCCTTTGGTC 58.313 61.111 21.78 6.18 31.42 4.02
149 150 2.508436 GAGCCTAGGCAAGAGGGC 59.492 66.667 34.70 6.92 44.88 5.19
150 151 2.818132 CGAGCCTAGGCAAGAGGG 59.182 66.667 34.70 13.13 44.88 4.30
151 152 2.107953 GCGAGCCTAGGCAAGAGG 59.892 66.667 34.70 18.72 44.88 3.69
152 153 2.107953 GGCGAGCCTAGGCAAGAG 59.892 66.667 34.70 21.99 44.88 2.85
153 154 2.683572 TGGCGAGCCTAGGCAAGA 60.684 61.111 34.70 11.43 44.88 3.02
154 155 2.512515 GTGGCGAGCCTAGGCAAG 60.513 66.667 34.70 26.79 45.70 4.01
155 156 3.315142 CTGTGGCGAGCCTAGGCAA 62.315 63.158 34.70 12.35 45.70 4.52
156 157 3.774528 CTGTGGCGAGCCTAGGCA 61.775 66.667 34.70 11.89 44.88 4.75
169 170 2.734723 CTCCACGTGGTCGCTGTG 60.735 66.667 32.74 12.16 41.18 3.66
170 171 2.910479 TCTCCACGTGGTCGCTGT 60.910 61.111 32.74 0.00 41.18 4.40
171 172 2.430921 GTCTCCACGTGGTCGCTG 60.431 66.667 32.74 18.28 41.18 5.18
172 173 3.681835 GGTCTCCACGTGGTCGCT 61.682 66.667 32.74 0.00 41.18 4.93
173 174 4.736896 GGGTCTCCACGTGGTCGC 62.737 72.222 32.74 25.19 41.18 5.19
174 175 3.299977 TGGGTCTCCACGTGGTCG 61.300 66.667 32.74 23.98 38.32 4.79
183 184 2.435693 CCGGGACAGATGGGTCTCC 61.436 68.421 0.00 0.00 34.71 3.71
184 185 1.265454 AACCGGGACAGATGGGTCTC 61.265 60.000 6.32 0.00 37.91 3.36
185 186 0.840722 AAACCGGGACAGATGGGTCT 60.841 55.000 6.32 0.00 37.91 3.85
186 187 0.676782 CAAACCGGGACAGATGGGTC 60.677 60.000 6.32 0.00 37.06 4.46
187 188 1.378762 CAAACCGGGACAGATGGGT 59.621 57.895 6.32 0.00 0.00 4.51
188 189 0.960364 CACAAACCGGGACAGATGGG 60.960 60.000 6.32 0.00 0.00 4.00
189 190 0.250727 ACACAAACCGGGACAGATGG 60.251 55.000 6.32 0.00 0.00 3.51
190 191 2.465860 TACACAAACCGGGACAGATG 57.534 50.000 6.32 0.00 0.00 2.90
191 192 2.635915 TCTTACACAAACCGGGACAGAT 59.364 45.455 6.32 0.00 0.00 2.90
192 193 2.040939 TCTTACACAAACCGGGACAGA 58.959 47.619 6.32 0.00 0.00 3.41
193 194 2.536761 TCTTACACAAACCGGGACAG 57.463 50.000 6.32 0.00 0.00 3.51
194 195 2.563702 GTTCTTACACAAACCGGGACA 58.436 47.619 6.32 0.00 0.00 4.02
195 196 1.875514 GGTTCTTACACAAACCGGGAC 59.124 52.381 6.32 0.00 35.93 4.46
196 197 2.259266 GGTTCTTACACAAACCGGGA 57.741 50.000 6.32 0.00 35.93 5.14
200 201 1.875514 GTCCCGGTTCTTACACAAACC 59.124 52.381 0.00 0.00 41.28 3.27
201 202 2.842457 AGTCCCGGTTCTTACACAAAC 58.158 47.619 0.00 0.00 0.00 2.93
202 203 4.686191 TTAGTCCCGGTTCTTACACAAA 57.314 40.909 0.00 0.00 0.00 2.83
203 204 4.503643 CCTTTAGTCCCGGTTCTTACACAA 60.504 45.833 0.00 0.00 0.00 3.33
204 205 3.007182 CCTTTAGTCCCGGTTCTTACACA 59.993 47.826 0.00 0.00 0.00 3.72
205 206 3.007290 ACCTTTAGTCCCGGTTCTTACAC 59.993 47.826 0.00 0.00 0.00 2.90
206 207 3.242011 ACCTTTAGTCCCGGTTCTTACA 58.758 45.455 0.00 0.00 0.00 2.41
207 208 3.969287 ACCTTTAGTCCCGGTTCTTAC 57.031 47.619 0.00 0.00 0.00 2.34
208 209 5.835280 CCTATACCTTTAGTCCCGGTTCTTA 59.165 44.000 0.00 0.00 32.36 2.10
209 210 4.652881 CCTATACCTTTAGTCCCGGTTCTT 59.347 45.833 0.00 0.00 32.36 2.52
210 211 4.221530 CCTATACCTTTAGTCCCGGTTCT 58.778 47.826 0.00 0.15 32.36 3.01
211 212 3.323115 CCCTATACCTTTAGTCCCGGTTC 59.677 52.174 0.00 0.00 32.36 3.62
212 213 3.311990 CCCTATACCTTTAGTCCCGGTT 58.688 50.000 0.00 0.00 32.36 4.44
213 214 2.968271 CCCTATACCTTTAGTCCCGGT 58.032 52.381 0.00 0.00 34.86 5.28
214 215 1.622312 GCCCTATACCTTTAGTCCCGG 59.378 57.143 0.00 0.00 0.00 5.73
215 216 2.606378 AGCCCTATACCTTTAGTCCCG 58.394 52.381 0.00 0.00 0.00 5.14
216 217 6.111669 CTAAAGCCCTATACCTTTAGTCCC 57.888 45.833 10.46 0.00 42.49 4.46
221 222 6.265422 GTCGGTACTAAAGCCCTATACCTTTA 59.735 42.308 0.00 0.00 34.34 1.85
222 223 5.069648 GTCGGTACTAAAGCCCTATACCTTT 59.930 44.000 0.00 0.00 34.34 3.11
223 224 4.586421 GTCGGTACTAAAGCCCTATACCTT 59.414 45.833 0.00 0.00 34.34 3.50
224 225 4.148079 GTCGGTACTAAAGCCCTATACCT 58.852 47.826 0.00 0.00 34.34 3.08
225 226 3.256879 GGTCGGTACTAAAGCCCTATACC 59.743 52.174 0.00 0.00 33.35 2.73
226 227 3.256879 GGGTCGGTACTAAAGCCCTATAC 59.743 52.174 0.00 0.00 33.58 1.47
227 228 3.140895 AGGGTCGGTACTAAAGCCCTATA 59.859 47.826 10.66 0.00 44.00 1.31
228 229 2.090887 AGGGTCGGTACTAAAGCCCTAT 60.091 50.000 10.66 0.00 44.00 2.57
229 230 1.288932 AGGGTCGGTACTAAAGCCCTA 59.711 52.381 10.66 0.00 44.00 3.53
230 231 0.042281 AGGGTCGGTACTAAAGCCCT 59.958 55.000 0.00 0.00 41.31 5.19
231 232 0.907486 AAGGGTCGGTACTAAAGCCC 59.093 55.000 0.00 0.00 36.46 5.19
232 233 2.775911 AAAGGGTCGGTACTAAAGCC 57.224 50.000 0.00 0.00 0.00 4.35
233 234 4.428209 GACTAAAGGGTCGGTACTAAAGC 58.572 47.826 0.00 0.00 0.00 3.51
234 235 4.142071 GGGACTAAAGGGTCGGTACTAAAG 60.142 50.000 0.00 0.00 37.12 1.85
235 236 3.769300 GGGACTAAAGGGTCGGTACTAAA 59.231 47.826 0.00 0.00 37.12 1.85
236 237 3.365472 GGGACTAAAGGGTCGGTACTAA 58.635 50.000 0.00 0.00 37.12 2.24
237 238 2.683742 CGGGACTAAAGGGTCGGTACTA 60.684 54.545 0.00 0.00 37.12 1.82
238 239 1.857965 GGGACTAAAGGGTCGGTACT 58.142 55.000 0.00 0.00 37.12 2.73
239 240 0.457443 CGGGACTAAAGGGTCGGTAC 59.543 60.000 0.00 0.00 37.12 3.34
240 241 0.684153 CCGGGACTAAAGGGTCGGTA 60.684 60.000 0.00 0.00 37.12 4.02
241 242 1.986210 CCGGGACTAAAGGGTCGGT 60.986 63.158 0.00 0.00 37.12 4.69
242 243 1.547472 AACCGGGACTAAAGGGTCGG 61.547 60.000 6.32 0.00 42.69 4.79
243 244 0.108472 GAACCGGGACTAAAGGGTCG 60.108 60.000 6.32 0.00 37.12 4.79
244 245 1.206610 GAGAACCGGGACTAAAGGGTC 59.793 57.143 6.32 0.00 41.88 4.46
245 246 1.273759 GAGAACCGGGACTAAAGGGT 58.726 55.000 6.32 0.00 0.00 4.34
246 247 0.540454 GGAGAACCGGGACTAAAGGG 59.460 60.000 6.32 0.00 0.00 3.95
247 248 1.272807 TGGAGAACCGGGACTAAAGG 58.727 55.000 6.32 0.00 39.42 3.11
248 249 2.614734 GGTTGGAGAACCGGGACTAAAG 60.615 54.545 6.32 0.00 42.47 1.85
249 250 1.348696 GGTTGGAGAACCGGGACTAAA 59.651 52.381 6.32 0.28 42.47 1.85
250 251 0.978907 GGTTGGAGAACCGGGACTAA 59.021 55.000 6.32 0.00 42.47 2.24
251 252 2.674958 GGTTGGAGAACCGGGACTA 58.325 57.895 6.32 0.00 42.47 2.59
252 253 3.479979 GGTTGGAGAACCGGGACT 58.520 61.111 6.32 4.01 42.47 3.85
258 259 0.179012 TTTGTCCCGGTTGGAGAACC 60.179 55.000 0.00 0.00 45.50 3.62
259 260 1.539827 CATTTGTCCCGGTTGGAGAAC 59.460 52.381 0.00 0.00 45.50 3.01
260 261 1.546773 CCATTTGTCCCGGTTGGAGAA 60.547 52.381 0.00 0.00 46.38 2.87
261 262 0.037590 CCATTTGTCCCGGTTGGAGA 59.962 55.000 0.00 0.00 46.38 3.71
262 263 0.965363 CCCATTTGTCCCGGTTGGAG 60.965 60.000 0.00 0.00 46.38 3.86
263 264 1.075836 CCCATTTGTCCCGGTTGGA 59.924 57.895 0.00 0.00 42.41 3.53
264 265 2.645192 GCCCATTTGTCCCGGTTGG 61.645 63.158 0.00 0.00 0.00 3.77
265 266 2.645192 GGCCCATTTGTCCCGGTTG 61.645 63.158 0.00 0.00 0.00 3.77
266 267 2.283604 GGCCCATTTGTCCCGGTT 60.284 61.111 0.00 0.00 0.00 4.44
267 268 1.502527 TAAGGCCCATTTGTCCCGGT 61.503 55.000 0.00 0.00 0.00 5.28
268 269 1.035385 GTAAGGCCCATTTGTCCCGG 61.035 60.000 0.00 0.00 0.00 5.73
269 270 1.373590 CGTAAGGCCCATTTGTCCCG 61.374 60.000 0.00 0.00 0.00 5.14
270 271 0.034863 TCGTAAGGCCCATTTGTCCC 60.035 55.000 0.00 0.00 38.47 4.46
271 272 1.471287 GTTCGTAAGGCCCATTTGTCC 59.529 52.381 0.00 0.00 38.47 4.02
272 273 1.471287 GGTTCGTAAGGCCCATTTGTC 59.529 52.381 0.00 0.00 38.47 3.18
273 274 1.541379 GGTTCGTAAGGCCCATTTGT 58.459 50.000 0.00 0.00 38.47 2.83
274 275 0.450184 CGGTTCGTAAGGCCCATTTG 59.550 55.000 0.00 0.00 38.47 2.32
275 276 0.678684 CCGGTTCGTAAGGCCCATTT 60.679 55.000 0.00 0.00 38.47 2.32
276 277 1.078001 CCGGTTCGTAAGGCCCATT 60.078 57.895 0.00 0.00 38.47 3.16
277 278 2.587889 CCGGTTCGTAAGGCCCAT 59.412 61.111 0.00 0.00 38.47 4.00
278 279 3.708544 CCCGGTTCGTAAGGCCCA 61.709 66.667 0.00 0.00 38.47 5.36
279 280 3.393106 TCCCGGTTCGTAAGGCCC 61.393 66.667 0.00 0.00 38.47 5.80
280 281 2.125391 GTCCCGGTTCGTAAGGCC 60.125 66.667 0.00 0.00 38.47 5.19
281 282 0.603439 TTTGTCCCGGTTCGTAAGGC 60.603 55.000 0.00 0.00 38.47 4.35
282 283 1.735571 CATTTGTCCCGGTTCGTAAGG 59.264 52.381 0.00 0.00 38.47 2.69
283 284 1.735571 CCATTTGTCCCGGTTCGTAAG 59.264 52.381 0.00 0.00 0.00 2.34
284 285 1.810959 CCATTTGTCCCGGTTCGTAA 58.189 50.000 0.00 0.00 0.00 3.18
285 286 0.674269 GCCATTTGTCCCGGTTCGTA 60.674 55.000 0.00 0.00 0.00 3.43
286 287 1.969589 GCCATTTGTCCCGGTTCGT 60.970 57.895 0.00 0.00 0.00 3.85
287 288 2.696759 GGCCATTTGTCCCGGTTCG 61.697 63.158 0.00 0.00 0.00 3.95
288 289 2.348104 GGGCCATTTGTCCCGGTTC 61.348 63.158 4.39 0.00 32.00 3.62
289 290 2.283604 GGGCCATTTGTCCCGGTT 60.284 61.111 4.39 0.00 32.00 4.44
293 294 1.977854 AGAAAAAGGGCCATTTGTCCC 59.022 47.619 25.73 11.52 42.94 4.46
294 295 5.420725 AATAGAAAAAGGGCCATTTGTCC 57.579 39.130 25.73 13.74 28.13 4.02
295 296 7.035612 CACTAATAGAAAAAGGGCCATTTGTC 58.964 38.462 22.82 22.82 0.00 3.18
296 297 6.574269 GCACTAATAGAAAAAGGGCCATTTGT 60.574 38.462 17.44 11.46 33.42 2.83
297 298 5.812127 GCACTAATAGAAAAAGGGCCATTTG 59.188 40.000 17.44 3.54 33.42 2.32
298 299 5.483583 TGCACTAATAGAAAAAGGGCCATTT 59.516 36.000 10.16 10.16 38.95 2.32
299 300 5.022787 TGCACTAATAGAAAAAGGGCCATT 58.977 37.500 6.18 0.00 38.95 3.16
300 301 4.609301 TGCACTAATAGAAAAAGGGCCAT 58.391 39.130 6.18 0.00 38.95 4.40
301 302 4.040936 TGCACTAATAGAAAAAGGGCCA 57.959 40.909 6.18 0.00 38.95 5.36
302 303 4.142160 CCTTGCACTAATAGAAAAAGGGCC 60.142 45.833 0.00 0.00 38.95 5.80
303 304 4.678044 GCCTTGCACTAATAGAAAAAGGGC 60.678 45.833 15.71 9.11 40.16 5.19
304 305 4.438744 CGCCTTGCACTAATAGAAAAAGGG 60.439 45.833 15.71 7.28 34.55 3.95
305 306 4.662145 CGCCTTGCACTAATAGAAAAAGG 58.338 43.478 12.12 12.12 36.58 3.11
306 307 4.098416 GCGCCTTGCACTAATAGAAAAAG 58.902 43.478 0.00 0.00 45.45 2.27
307 308 4.091453 GCGCCTTGCACTAATAGAAAAA 57.909 40.909 0.00 0.00 45.45 1.94
308 309 3.757745 GCGCCTTGCACTAATAGAAAA 57.242 42.857 0.00 0.00 45.45 2.29
320 321 2.507769 GCAATTCTGGCGCCTTGC 60.508 61.111 28.39 28.39 45.38 4.01
321 322 0.804544 CATGCAATTCTGGCGCCTTG 60.805 55.000 29.70 23.59 0.00 3.61
322 323 0.966875 TCATGCAATTCTGGCGCCTT 60.967 50.000 29.70 10.89 0.00 4.35
323 324 1.378911 TCATGCAATTCTGGCGCCT 60.379 52.632 29.70 3.37 0.00 5.52
324 325 1.226773 GTCATGCAATTCTGGCGCC 60.227 57.895 22.73 22.73 0.00 6.53
325 326 0.524816 CTGTCATGCAATTCTGGCGC 60.525 55.000 0.00 0.00 0.00 6.53
326 327 0.099968 CCTGTCATGCAATTCTGGCG 59.900 55.000 0.00 0.00 0.00 5.69
327 328 1.180029 ACCTGTCATGCAATTCTGGC 58.820 50.000 0.00 0.00 0.00 4.85
328 329 2.559668 ACAACCTGTCATGCAATTCTGG 59.440 45.455 0.00 0.00 0.00 3.86
329 330 3.829948 GACAACCTGTCATGCAATTCTG 58.170 45.455 0.00 0.00 46.22 3.02
362 363 0.690762 GGGGACACTAGTGAAAGCCA 59.309 55.000 29.30 0.00 0.00 4.75
363 364 0.690762 TGGGGACACTAGTGAAAGCC 59.309 55.000 29.30 21.02 33.40 4.35
368 369 2.430694 CGATGATTGGGGACACTAGTGA 59.569 50.000 29.30 5.99 42.67 3.41
408 412 2.285743 AGGAGCTCCCTTGGGACC 60.286 66.667 29.54 5.06 44.85 4.46
448 452 3.811098 GCGGGATCTACATCTGGTCTAGA 60.811 52.174 0.00 0.00 40.37 2.43
486 490 2.423538 CCCATGGAACGACTTCAAATCC 59.576 50.000 15.22 0.00 0.00 3.01
514 519 5.429130 GAGAGGTAGGTTTAATGTTCCTGG 58.571 45.833 0.00 0.00 33.34 4.45
515 520 5.105473 TCGAGAGGTAGGTTTAATGTTCCTG 60.105 44.000 0.00 0.00 33.34 3.86
516 521 5.021458 TCGAGAGGTAGGTTTAATGTTCCT 58.979 41.667 0.00 0.00 35.60 3.36
522 527 6.793505 ATCTGTTCGAGAGGTAGGTTTAAT 57.206 37.500 0.00 0.00 32.80 1.40
524 529 6.096001 GGTAATCTGTTCGAGAGGTAGGTTTA 59.904 42.308 0.00 0.00 32.80 2.01
526 531 4.401837 GGTAATCTGTTCGAGAGGTAGGTT 59.598 45.833 0.00 0.00 32.80 3.50
582 587 7.414436 CCTCAAAGTTACAGAATTCGTGAAAA 58.586 34.615 11.54 4.36 0.00 2.29
583 588 6.512741 GCCTCAAAGTTACAGAATTCGTGAAA 60.513 38.462 11.54 0.00 0.00 2.69
585 590 4.451096 GCCTCAAAGTTACAGAATTCGTGA 59.549 41.667 11.54 2.98 0.00 4.35
586 591 4.213270 TGCCTCAAAGTTACAGAATTCGTG 59.787 41.667 11.54 7.88 0.00 4.35
587 592 4.385825 TGCCTCAAAGTTACAGAATTCGT 58.614 39.130 0.00 4.15 0.00 3.85
588 593 4.452455 ACTGCCTCAAAGTTACAGAATTCG 59.548 41.667 0.00 0.00 32.67 3.34
594 599 2.069273 CCGACTGCCTCAAAGTTACAG 58.931 52.381 0.00 0.00 0.00 2.74
603 608 0.756294 TCTCAAAACCGACTGCCTCA 59.244 50.000 0.00 0.00 0.00 3.86
604 609 1.734465 CATCTCAAAACCGACTGCCTC 59.266 52.381 0.00 0.00 0.00 4.70
608 613 4.513692 TGTAAACCATCTCAAAACCGACTG 59.486 41.667 0.00 0.00 0.00 3.51
613 618 5.008316 AGTCGTTGTAAACCATCTCAAAACC 59.992 40.000 0.00 0.00 46.28 3.27
644 649 2.505498 CGTGTGCGGTGCTATCGTC 61.505 63.158 0.00 0.00 0.00 4.20
656 661 2.270297 GATGGCCATGAACCGTGTGC 62.270 60.000 26.56 0.00 0.00 4.57
663 668 1.560505 AGTTTGGGATGGCCATGAAC 58.439 50.000 26.56 20.31 35.15 3.18
669 674 4.103311 AGAAGAGTATAGTTTGGGATGGCC 59.897 45.833 0.00 0.00 0.00 5.36
670 675 5.297569 AGAAGAGTATAGTTTGGGATGGC 57.702 43.478 0.00 0.00 0.00 4.40
695 700 5.651530 TGTAATCCTGTTTTCAACGCAAAA 58.348 33.333 0.00 0.00 0.00 2.44
696 701 5.250235 TGTAATCCTGTTTTCAACGCAAA 57.750 34.783 0.00 0.00 0.00 3.68
697 702 4.902443 TGTAATCCTGTTTTCAACGCAA 57.098 36.364 0.00 0.00 0.00 4.85
698 703 4.902443 TTGTAATCCTGTTTTCAACGCA 57.098 36.364 0.00 0.00 0.00 5.24
699 704 5.569059 CAGATTGTAATCCTGTTTTCAACGC 59.431 40.000 1.16 0.00 36.04 4.84
700 705 5.569059 GCAGATTGTAATCCTGTTTTCAACG 59.431 40.000 1.16 0.00 36.04 4.10
701 706 6.446318 TGCAGATTGTAATCCTGTTTTCAAC 58.554 36.000 1.16 0.00 36.04 3.18
702 707 6.647334 TGCAGATTGTAATCCTGTTTTCAA 57.353 33.333 1.16 0.00 36.04 2.69
703 708 5.335897 GCTGCAGATTGTAATCCTGTTTTCA 60.336 40.000 20.43 0.00 36.04 2.69
704 709 5.098211 GCTGCAGATTGTAATCCTGTTTTC 58.902 41.667 20.43 0.00 36.04 2.29
705 710 4.768968 AGCTGCAGATTGTAATCCTGTTTT 59.231 37.500 20.43 0.00 36.04 2.43
706 711 4.338879 AGCTGCAGATTGTAATCCTGTTT 58.661 39.130 20.43 0.00 36.04 2.83
707 712 3.960571 AGCTGCAGATTGTAATCCTGTT 58.039 40.909 20.43 0.00 36.04 3.16
708 713 3.641434 AGCTGCAGATTGTAATCCTGT 57.359 42.857 20.43 0.00 36.04 4.00
709 714 6.317140 TCTTTTAGCTGCAGATTGTAATCCTG 59.683 38.462 20.43 0.00 36.04 3.86
710 715 6.418101 TCTTTTAGCTGCAGATTGTAATCCT 58.582 36.000 20.43 3.77 36.04 3.24
711 716 6.683974 TCTTTTAGCTGCAGATTGTAATCC 57.316 37.500 20.43 0.00 36.04 3.01
712 717 7.695618 CAGTTCTTTTAGCTGCAGATTGTAATC 59.304 37.037 20.43 0.00 31.07 1.75
713 718 7.533426 CAGTTCTTTTAGCTGCAGATTGTAAT 58.467 34.615 20.43 0.00 28.99 1.89
714 719 6.902341 CAGTTCTTTTAGCTGCAGATTGTAA 58.098 36.000 20.43 0.00 28.99 2.41
715 720 6.486253 CAGTTCTTTTAGCTGCAGATTGTA 57.514 37.500 20.43 0.00 28.99 2.41
716 721 5.368256 CAGTTCTTTTAGCTGCAGATTGT 57.632 39.130 20.43 0.23 28.99 2.71
724 729 5.641209 AGTGATGTAGCAGTTCTTTTAGCTG 59.359 40.000 0.00 0.00 39.31 4.24
725 730 5.799213 AGTGATGTAGCAGTTCTTTTAGCT 58.201 37.500 0.00 0.00 40.92 3.32
726 731 6.310197 CAAGTGATGTAGCAGTTCTTTTAGC 58.690 40.000 0.00 0.00 29.28 3.09
727 732 6.428159 ACCAAGTGATGTAGCAGTTCTTTTAG 59.572 38.462 0.00 0.00 29.28 1.85
728 733 6.296026 ACCAAGTGATGTAGCAGTTCTTTTA 58.704 36.000 0.00 0.00 29.28 1.52
729 734 5.133221 ACCAAGTGATGTAGCAGTTCTTTT 58.867 37.500 0.00 0.00 29.28 2.27
730 735 4.718961 ACCAAGTGATGTAGCAGTTCTTT 58.281 39.130 0.00 0.00 29.28 2.52
731 736 4.357918 ACCAAGTGATGTAGCAGTTCTT 57.642 40.909 0.00 0.00 29.28 2.52
732 737 5.483685 TTACCAAGTGATGTAGCAGTTCT 57.516 39.130 0.00 0.00 29.28 3.01
733 738 5.390991 GCTTTACCAAGTGATGTAGCAGTTC 60.391 44.000 0.00 0.00 31.86 3.01
734 739 4.455877 GCTTTACCAAGTGATGTAGCAGTT 59.544 41.667 0.00 0.00 31.86 3.16
735 740 4.003648 GCTTTACCAAGTGATGTAGCAGT 58.996 43.478 0.00 0.00 31.86 4.40
736 741 4.256920 AGCTTTACCAAGTGATGTAGCAG 58.743 43.478 0.00 0.00 31.86 4.24
737 742 4.286297 AGCTTTACCAAGTGATGTAGCA 57.714 40.909 0.00 0.00 31.86 3.49
738 743 5.292101 CAGTAGCTTTACCAAGTGATGTAGC 59.708 44.000 0.00 0.00 31.86 3.58
739 744 5.812642 CCAGTAGCTTTACCAAGTGATGTAG 59.187 44.000 0.00 0.00 31.86 2.74
740 745 5.338056 CCCAGTAGCTTTACCAAGTGATGTA 60.338 44.000 0.00 0.00 31.86 2.29
741 746 4.565652 CCCAGTAGCTTTACCAAGTGATGT 60.566 45.833 0.00 0.00 31.86 3.06
742 747 3.941483 CCCAGTAGCTTTACCAAGTGATG 59.059 47.826 0.00 0.00 31.86 3.07
743 748 3.844211 TCCCAGTAGCTTTACCAAGTGAT 59.156 43.478 0.00 0.00 31.86 3.06
744 749 3.244582 TCCCAGTAGCTTTACCAAGTGA 58.755 45.455 0.00 0.00 31.86 3.41
745 750 3.695830 TCCCAGTAGCTTTACCAAGTG 57.304 47.619 0.00 0.00 31.86 3.16
746 751 3.200165 GGATCCCAGTAGCTTTACCAAGT 59.800 47.826 0.00 0.00 31.86 3.16
747 752 3.199946 TGGATCCCAGTAGCTTTACCAAG 59.800 47.826 9.90 0.00 0.00 3.61
748 753 3.186283 TGGATCCCAGTAGCTTTACCAA 58.814 45.455 9.90 0.00 0.00 3.67
772 777 4.301505 ACACACGGTGATGATGCC 57.698 55.556 16.29 0.00 36.96 4.40
785 796 0.522626 CAAGCCGAATGATGCACACA 59.477 50.000 0.00 0.00 0.00 3.72
789 800 3.499537 GTGATATCAAGCCGAATGATGCA 59.500 43.478 7.07 0.00 38.01 3.96
797 808 0.758734 CCCTGGTGATATCAAGCCGA 59.241 55.000 7.07 0.00 0.00 5.54
834 845 8.957028 CCAGTATGTTAACAATTTGCATTATCG 58.043 33.333 13.23 0.00 0.00 2.92
873 884 8.462811 TGAGTTCTTGTTCATATCTCTGTCTAC 58.537 37.037 0.00 0.00 0.00 2.59
878 893 6.534436 CAGGTGAGTTCTTGTTCATATCTCTG 59.466 42.308 0.00 0.00 0.00 3.35
880 895 5.293079 GCAGGTGAGTTCTTGTTCATATCTC 59.707 44.000 0.00 0.00 0.00 2.75
882 897 4.333926 GGCAGGTGAGTTCTTGTTCATATC 59.666 45.833 0.00 0.00 0.00 1.63
898 917 1.631405 TTTGGATTTGGAGGCAGGTG 58.369 50.000 0.00 0.00 0.00 4.00
936 963 0.317479 AACTAGTCCTGCCGTGTCAC 59.683 55.000 0.00 0.00 0.00 3.67
940 967 2.416972 GGTAGAAACTAGTCCTGCCGTG 60.417 54.545 13.71 0.00 0.00 4.94
1008 1035 2.738846 GTCGTGGGCTATGCATATTCTG 59.261 50.000 6.92 0.00 0.00 3.02
1016 1043 1.221414 GATCTTGTCGTGGGCTATGC 58.779 55.000 0.00 0.00 0.00 3.14
1031 1058 3.262420 GCCGGCGAATATGTATTGATCT 58.738 45.455 12.58 0.00 0.00 2.75
1065 1095 0.457851 CCCTGGAGCTTCTGTACGAG 59.542 60.000 0.00 0.00 0.00 4.18
1066 1096 0.039180 TCCCTGGAGCTTCTGTACGA 59.961 55.000 0.00 0.00 0.00 3.43
1867 1953 3.775316 GGTATTTTGGACTCAGAGAGGGA 59.225 47.826 3.79 0.00 33.35 4.20
1896 1984 0.106708 TCCTCAAAAGTGCAGTCGCT 59.893 50.000 0.00 0.00 39.64 4.93
2171 2284 4.205323 AGAAAGAAAAACGGTTGTAGCG 57.795 40.909 0.00 0.00 45.69 4.26
2671 3179 6.759497 AAGAAGACGCTAAAAATAAGGCAT 57.241 33.333 0.00 0.00 0.00 4.40
2676 3184 8.161699 ACAGGAAAAGAAGACGCTAAAAATAA 57.838 30.769 0.00 0.00 0.00 1.40
2678 3186 6.635030 ACAGGAAAAGAAGACGCTAAAAAT 57.365 33.333 0.00 0.00 0.00 1.82
2679 3187 7.739498 ATACAGGAAAAGAAGACGCTAAAAA 57.261 32.000 0.00 0.00 0.00 1.94
2680 3188 7.739498 AATACAGGAAAAGAAGACGCTAAAA 57.261 32.000 0.00 0.00 0.00 1.52
2681 3189 7.739498 AAATACAGGAAAAGAAGACGCTAAA 57.261 32.000 0.00 0.00 0.00 1.85
2682 3190 8.836268 TTAAATACAGGAAAAGAAGACGCTAA 57.164 30.769 0.00 0.00 0.00 3.09
2683 3191 7.548075 CCTTAAATACAGGAAAAGAAGACGCTA 59.452 37.037 0.00 0.00 32.41 4.26
2684 3192 6.371825 CCTTAAATACAGGAAAAGAAGACGCT 59.628 38.462 0.00 0.00 32.41 5.07
2685 3193 6.370718 TCCTTAAATACAGGAAAAGAAGACGC 59.629 38.462 0.00 0.00 37.51 5.19
2756 3264 9.832445 CCCGGTGCTTTTAACTCATATATATAT 57.168 33.333 0.00 0.00 0.00 0.86
2762 3270 4.080526 ACTCCCGGTGCTTTTAACTCATAT 60.081 41.667 0.00 0.00 0.00 1.78
2763 3271 3.262405 ACTCCCGGTGCTTTTAACTCATA 59.738 43.478 0.00 0.00 0.00 2.15
2764 3272 2.039879 ACTCCCGGTGCTTTTAACTCAT 59.960 45.455 0.00 0.00 0.00 2.90
2765 3273 1.418637 ACTCCCGGTGCTTTTAACTCA 59.581 47.619 0.00 0.00 0.00 3.41
2766 3274 2.074576 GACTCCCGGTGCTTTTAACTC 58.925 52.381 0.00 0.00 0.00 3.01
2767 3275 1.271217 GGACTCCCGGTGCTTTTAACT 60.271 52.381 0.00 0.00 33.31 2.24
2768 3276 1.162698 GGACTCCCGGTGCTTTTAAC 58.837 55.000 0.00 0.00 33.31 2.01
2769 3277 1.061546 AGGACTCCCGGTGCTTTTAA 58.938 50.000 0.00 0.00 44.21 1.52
2770 3278 1.551883 GTAGGACTCCCGGTGCTTTTA 59.448 52.381 0.00 0.00 44.21 1.52
2771 3279 0.323957 GTAGGACTCCCGGTGCTTTT 59.676 55.000 0.00 0.00 44.21 2.27
2772 3280 0.834687 TGTAGGACTCCCGGTGCTTT 60.835 55.000 0.00 0.00 44.21 3.51
2773 3281 1.229082 TGTAGGACTCCCGGTGCTT 60.229 57.895 0.00 0.00 44.21 3.91
2775 3283 2.577593 GTGTAGGACTCCCGGTGC 59.422 66.667 0.00 0.00 37.58 5.01
2776 3284 0.903454 AAGGTGTAGGACTCCCGGTG 60.903 60.000 0.00 0.00 37.58 4.94
2777 3285 0.903454 CAAGGTGTAGGACTCCCGGT 60.903 60.000 0.00 0.00 37.58 5.28
2778 3286 0.903454 ACAAGGTGTAGGACTCCCGG 60.903 60.000 0.00 0.00 37.58 5.73
2779 3287 0.531200 GACAAGGTGTAGGACTCCCG 59.469 60.000 0.00 0.00 37.58 5.14
2780 3288 0.903236 GGACAAGGTGTAGGACTCCC 59.097 60.000 0.00 0.00 32.39 4.30
2781 3289 0.531200 CGGACAAGGTGTAGGACTCC 59.469 60.000 0.00 0.00 32.16 3.85
2782 3290 1.473278 CTCGGACAAGGTGTAGGACTC 59.527 57.143 0.00 0.00 0.00 3.36
2783 3291 1.075050 TCTCGGACAAGGTGTAGGACT 59.925 52.381 0.00 0.00 0.00 3.85
2784 3292 1.542492 TCTCGGACAAGGTGTAGGAC 58.458 55.000 0.00 0.00 0.00 3.85
2785 3293 2.100197 CATCTCGGACAAGGTGTAGGA 58.900 52.381 0.00 0.00 0.00 2.94
2786 3294 1.825474 ACATCTCGGACAAGGTGTAGG 59.175 52.381 0.00 0.00 38.83 3.18
2787 3295 2.492088 TCACATCTCGGACAAGGTGTAG 59.508 50.000 0.00 0.00 38.56 2.74
2788 3296 2.521126 TCACATCTCGGACAAGGTGTA 58.479 47.619 0.00 0.00 38.56 2.90
2789 3297 1.338107 TCACATCTCGGACAAGGTGT 58.662 50.000 0.00 0.00 41.30 4.16
2790 3298 2.094026 TCATCACATCTCGGACAAGGTG 60.094 50.000 0.00 0.00 33.40 4.00
2791 3299 2.179427 TCATCACATCTCGGACAAGGT 58.821 47.619 0.00 0.00 0.00 3.50
2792 3300 2.967599 TCATCACATCTCGGACAAGG 57.032 50.000 0.00 0.00 0.00 3.61
2793 3301 6.045318 ACTAAATCATCACATCTCGGACAAG 58.955 40.000 0.00 0.00 0.00 3.16
2794 3302 5.977635 ACTAAATCATCACATCTCGGACAA 58.022 37.500 0.00 0.00 0.00 3.18
2795 3303 5.451937 GGACTAAATCATCACATCTCGGACA 60.452 44.000 0.00 0.00 0.00 4.02
2796 3304 4.985409 GGACTAAATCATCACATCTCGGAC 59.015 45.833 0.00 0.00 0.00 4.79
2797 3305 4.895889 AGGACTAAATCATCACATCTCGGA 59.104 41.667 0.00 0.00 0.00 4.55
2798 3306 5.207110 AGGACTAAATCATCACATCTCGG 57.793 43.478 0.00 0.00 0.00 4.63
2799 3307 7.208225 TCTAGGACTAAATCATCACATCTCG 57.792 40.000 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.