Multiple sequence alignment - TraesCS5D01G289700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G289700 chr5D 100.000 4629 0 0 1 4629 388288469 388293097 0.000000e+00 8549.0
1 TraesCS5D01G289700 chr5D 94.118 646 34 3 3984 4629 43234202 43233561 0.000000e+00 979.0
2 TraesCS5D01G289700 chr2A 96.416 3209 94 6 794 3984 530681923 530678718 0.000000e+00 5269.0
3 TraesCS5D01G289700 chr2A 95.401 674 28 2 4 676 530682588 530681917 0.000000e+00 1070.0
4 TraesCS5D01G289700 chr6B 96.077 3161 93 13 851 3982 658819156 658822314 0.000000e+00 5121.0
5 TraesCS5D01G289700 chr6B 87.273 440 48 4 11 446 569225120 569224685 3.220000e-136 496.0
6 TraesCS5D01G289700 chr6B 97.849 93 2 0 675 767 658819058 658819150 1.330000e-35 161.0
7 TraesCS5D01G289700 chr7B 95.768 3166 102 12 851 3990 180768022 180764863 0.000000e+00 5075.0
8 TraesCS5D01G289700 chr3A 95.544 3007 120 10 1 2998 13326118 13329119 0.000000e+00 4798.0
9 TraesCS5D01G289700 chr3A 93.750 880 35 4 3122 3983 12993443 12994320 0.000000e+00 1303.0
10 TraesCS5D01G289700 chr3A 86.726 452 49 6 1 446 700042956 700042510 4.160000e-135 492.0
11 TraesCS5D01G289700 chr3A 91.197 284 22 3 574 856 12992909 12993190 2.610000e-102 383.0
12 TraesCS5D01G289700 chr3A 82.799 343 54 5 976 1316 714773268 714772929 7.530000e-78 302.0
13 TraesCS5D01G289700 chr3A 96.721 61 2 0 2944 3004 13329190 13329250 8.190000e-18 102.0
14 TraesCS5D01G289700 chr3A 93.478 46 2 1 918 963 714773631 714773587 2.990000e-07 67.6
15 TraesCS5D01G289700 chr1D 94.214 3163 148 15 1 3149 410184409 410181268 0.000000e+00 4795.0
16 TraesCS5D01G289700 chr1D 94.341 1979 91 5 1087 3062 1039237 1041197 0.000000e+00 3014.0
17 TraesCS5D01G289700 chr1D 94.427 646 33 2 3984 4629 333255918 333256560 0.000000e+00 990.0
18 TraesCS5D01G289700 chr5A 91.021 1949 161 12 862 2803 69091187 69089246 0.000000e+00 2617.0
19 TraesCS5D01G289700 chr3B 94.721 1023 42 3 2976 3986 713928459 713929481 0.000000e+00 1580.0
20 TraesCS5D01G289700 chr3B 94.608 1020 43 3 2976 3983 713900900 713901919 0.000000e+00 1568.0
21 TraesCS5D01G289700 chr3B 94.428 1023 44 4 2976 3986 713825852 713826873 0.000000e+00 1561.0
22 TraesCS5D01G289700 chr3B 94.330 1023 45 4 2976 3986 713859860 713860881 0.000000e+00 1555.0
23 TraesCS5D01G289700 chr3B 94.135 1023 47 4 2976 3986 713791889 713792910 0.000000e+00 1544.0
24 TraesCS5D01G289700 chr3B 90.748 508 37 7 1 502 754390515 754391018 0.000000e+00 669.0
25 TraesCS5D01G289700 chr5B 84.839 1550 209 17 875 2418 543954285 543955814 0.000000e+00 1537.0
26 TraesCS5D01G289700 chrUn 93.353 1023 47 5 2976 3986 176699829 176698816 0.000000e+00 1493.0
27 TraesCS5D01G289700 chrUn 93.353 1023 47 5 2976 3986 347810258 347811271 0.000000e+00 1493.0
28 TraesCS5D01G289700 chrUn 93.157 1023 49 5 2976 3986 176733847 176732834 0.000000e+00 1482.0
29 TraesCS5D01G289700 chr1B 93.523 880 37 4 3125 3986 565987456 565986579 0.000000e+00 1291.0
30 TraesCS5D01G289700 chr1B 96.475 539 12 2 350 887 526298633 526299165 0.000000e+00 883.0
31 TraesCS5D01G289700 chr1B 96.604 530 11 2 350 878 526309581 526310104 0.000000e+00 872.0
32 TraesCS5D01G289700 chr1B 88.352 455 39 7 1 446 565988531 565988082 6.820000e-148 534.0
33 TraesCS5D01G289700 chr1B 91.667 348 26 3 510 856 565988057 565987712 3.240000e-131 479.0
34 TraesCS5D01G289700 chr3D 94.737 646 28 4 3984 4629 271426111 271426750 0.000000e+00 1000.0
35 TraesCS5D01G289700 chr3D 94.272 646 34 2 3984 4629 184698000 184698642 0.000000e+00 985.0
36 TraesCS5D01G289700 chr3D 94.109 645 35 2 3985 4629 438156579 438157220 0.000000e+00 977.0
37 TraesCS5D01G289700 chr3D 90.485 515 37 8 1 507 11021511 11021001 0.000000e+00 669.0
38 TraesCS5D01G289700 chr3D 87.619 210 21 3 2755 2962 596871689 596871483 5.990000e-59 239.0
39 TraesCS5D01G289700 chr4D 94.720 644 31 2 3984 4627 304071926 304071286 0.000000e+00 998.0
40 TraesCS5D01G289700 chr6D 94.427 646 33 2 3984 4629 296183519 296184161 0.000000e+00 990.0
41 TraesCS5D01G289700 chr2D 94.427 646 33 2 3984 4629 442620420 442621062 0.000000e+00 990.0
42 TraesCS5D01G289700 chr2D 94.272 646 33 3 3984 4629 67267949 67268590 0.000000e+00 985.0
43 TraesCS5D01G289700 chr2D 89.103 468 42 7 1 461 51138183 51138648 1.440000e-159 573.0
44 TraesCS5D01G289700 chr2D 95.455 44 2 0 459 502 51138806 51138849 2.310000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G289700 chr5D 388288469 388293097 4628 False 8549.00 8549 100.000000 1 4629 1 chr5D.!!$F1 4628
1 TraesCS5D01G289700 chr5D 43233561 43234202 641 True 979.00 979 94.118000 3984 4629 1 chr5D.!!$R1 645
2 TraesCS5D01G289700 chr2A 530678718 530682588 3870 True 3169.50 5269 95.908500 4 3984 2 chr2A.!!$R1 3980
3 TraesCS5D01G289700 chr6B 658819058 658822314 3256 False 2641.00 5121 96.963000 675 3982 2 chr6B.!!$F1 3307
4 TraesCS5D01G289700 chr7B 180764863 180768022 3159 True 5075.00 5075 95.768000 851 3990 1 chr7B.!!$R1 3139
5 TraesCS5D01G289700 chr3A 13326118 13329250 3132 False 2450.00 4798 96.132500 1 3004 2 chr3A.!!$F2 3003
6 TraesCS5D01G289700 chr3A 12992909 12994320 1411 False 843.00 1303 92.473500 574 3983 2 chr3A.!!$F1 3409
7 TraesCS5D01G289700 chr1D 410181268 410184409 3141 True 4795.00 4795 94.214000 1 3149 1 chr1D.!!$R1 3148
8 TraesCS5D01G289700 chr1D 1039237 1041197 1960 False 3014.00 3014 94.341000 1087 3062 1 chr1D.!!$F1 1975
9 TraesCS5D01G289700 chr1D 333255918 333256560 642 False 990.00 990 94.427000 3984 4629 1 chr1D.!!$F2 645
10 TraesCS5D01G289700 chr5A 69089246 69091187 1941 True 2617.00 2617 91.021000 862 2803 1 chr5A.!!$R1 1941
11 TraesCS5D01G289700 chr3B 713928459 713929481 1022 False 1580.00 1580 94.721000 2976 3986 1 chr3B.!!$F5 1010
12 TraesCS5D01G289700 chr3B 713900900 713901919 1019 False 1568.00 1568 94.608000 2976 3983 1 chr3B.!!$F4 1007
13 TraesCS5D01G289700 chr3B 713825852 713826873 1021 False 1561.00 1561 94.428000 2976 3986 1 chr3B.!!$F2 1010
14 TraesCS5D01G289700 chr3B 713859860 713860881 1021 False 1555.00 1555 94.330000 2976 3986 1 chr3B.!!$F3 1010
15 TraesCS5D01G289700 chr3B 713791889 713792910 1021 False 1544.00 1544 94.135000 2976 3986 1 chr3B.!!$F1 1010
16 TraesCS5D01G289700 chr3B 754390515 754391018 503 False 669.00 669 90.748000 1 502 1 chr3B.!!$F6 501
17 TraesCS5D01G289700 chr5B 543954285 543955814 1529 False 1537.00 1537 84.839000 875 2418 1 chr5B.!!$F1 1543
18 TraesCS5D01G289700 chrUn 176698816 176699829 1013 True 1493.00 1493 93.353000 2976 3986 1 chrUn.!!$R1 1010
19 TraesCS5D01G289700 chrUn 347810258 347811271 1013 False 1493.00 1493 93.353000 2976 3986 1 chrUn.!!$F1 1010
20 TraesCS5D01G289700 chrUn 176732834 176733847 1013 True 1482.00 1482 93.157000 2976 3986 1 chrUn.!!$R2 1010
21 TraesCS5D01G289700 chr1B 526298633 526299165 532 False 883.00 883 96.475000 350 887 1 chr1B.!!$F1 537
22 TraesCS5D01G289700 chr1B 526309581 526310104 523 False 872.00 872 96.604000 350 878 1 chr1B.!!$F2 528
23 TraesCS5D01G289700 chr1B 565986579 565988531 1952 True 768.00 1291 91.180667 1 3986 3 chr1B.!!$R1 3985
24 TraesCS5D01G289700 chr3D 271426111 271426750 639 False 1000.00 1000 94.737000 3984 4629 1 chr3D.!!$F2 645
25 TraesCS5D01G289700 chr3D 184698000 184698642 642 False 985.00 985 94.272000 3984 4629 1 chr3D.!!$F1 645
26 TraesCS5D01G289700 chr3D 438156579 438157220 641 False 977.00 977 94.109000 3985 4629 1 chr3D.!!$F3 644
27 TraesCS5D01G289700 chr3D 11021001 11021511 510 True 669.00 669 90.485000 1 507 1 chr3D.!!$R1 506
28 TraesCS5D01G289700 chr4D 304071286 304071926 640 True 998.00 998 94.720000 3984 4627 1 chr4D.!!$R1 643
29 TraesCS5D01G289700 chr6D 296183519 296184161 642 False 990.00 990 94.427000 3984 4629 1 chr6D.!!$F1 645
30 TraesCS5D01G289700 chr2D 442620420 442621062 642 False 990.00 990 94.427000 3984 4629 1 chr2D.!!$F2 645
31 TraesCS5D01G289700 chr2D 67267949 67268590 641 False 985.00 985 94.272000 3984 4629 1 chr2D.!!$F1 645
32 TraesCS5D01G289700 chr2D 51138183 51138849 666 False 322.15 573 92.279000 1 502 2 chr2D.!!$F3 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 72 0.112412 AGACCAGAAACGGCCCAAAT 59.888 50.000 0.00 0.0 0.00 2.32 F
71 73 0.966179 GACCAGAAACGGCCCAAATT 59.034 50.000 0.00 0.0 0.00 1.82 F
179 186 1.374190 CTGTGCTGCTCTTCCCAGT 59.626 57.895 0.00 0.0 32.93 4.00 F
903 1086 2.673368 GCTCTCAGTAACCCATTTCACG 59.327 50.000 0.00 0.0 0.00 4.35 F
1956 2150 2.738643 GCAGCAGCAGCAATGATGAAAT 60.739 45.455 1.35 0.0 45.49 2.17 F
2330 2528 3.293337 TGGAAAGCAGTAGATACCGCTA 58.707 45.455 1.31 0.0 38.89 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1578 1770 1.961277 CGCTCCAACCGCTTCAAGT 60.961 57.895 0.00 0.0 0.00 3.16 R
1962 2156 3.052944 CCATTCCAAAATAGGGAGGGACA 60.053 47.826 0.00 0.0 35.46 4.02 R
2039 2233 3.296322 TTGGCAATGGTTTGTTCGATC 57.704 42.857 0.00 0.0 35.17 3.69 R
2882 3084 1.891150 CAAGAATCCTTGCAGCCAAGT 59.109 47.619 2.61 0.0 45.57 3.16 R
3085 3480 2.751259 CAGCAAGCATAACATCACCAGT 59.249 45.455 0.00 0.0 0.00 4.00 R
3994 4455 1.698506 TCCGTTTTGGCTTTCCACAT 58.301 45.000 0.00 0.0 43.33 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 36 2.159296 GCCGAAAACTGAAACACAAGGT 60.159 45.455 0.00 0.00 0.00 3.50
70 72 0.112412 AGACCAGAAACGGCCCAAAT 59.888 50.000 0.00 0.00 0.00 2.32
71 73 0.966179 GACCAGAAACGGCCCAAATT 59.034 50.000 0.00 0.00 0.00 1.82
179 186 1.374190 CTGTGCTGCTCTTCCCAGT 59.626 57.895 0.00 0.00 32.93 4.00
405 420 4.036734 TCAGACTTGTTTGTTGATTCAGGC 59.963 41.667 0.00 0.00 0.00 4.85
467 644 8.837389 CGATTCCATACTCATCGGTAGAATATA 58.163 37.037 0.00 0.00 36.89 0.86
697 875 3.303659 GCAAGTCACAGCTCAAGAACTTC 60.304 47.826 0.00 0.00 0.00 3.01
903 1086 2.673368 GCTCTCAGTAACCCATTTCACG 59.327 50.000 0.00 0.00 0.00 4.35
1188 1376 2.842496 TGTGAAGCAAGAGATGAGGGAT 59.158 45.455 0.00 0.00 0.00 3.85
1189 1377 4.033009 TGTGAAGCAAGAGATGAGGGATA 58.967 43.478 0.00 0.00 0.00 2.59
1190 1378 4.471025 TGTGAAGCAAGAGATGAGGGATAA 59.529 41.667 0.00 0.00 0.00 1.75
1237 1425 3.369175 GAAAAGAAGGCCAGGGAATCAT 58.631 45.455 5.01 0.00 0.00 2.45
1779 1972 3.947834 GGGGAGTGATGAATTTGGTAGTG 59.052 47.826 0.00 0.00 0.00 2.74
1956 2150 2.738643 GCAGCAGCAGCAATGATGAAAT 60.739 45.455 1.35 0.00 45.49 2.17
1962 2156 5.168569 CAGCAGCAATGATGAAATTGAAGT 58.831 37.500 1.35 0.00 39.46 3.01
2167 2363 5.823045 GCTCTGGTATTACTAGGTTTGCAAT 59.177 40.000 0.00 0.00 0.00 3.56
2330 2528 3.293337 TGGAAAGCAGTAGATACCGCTA 58.707 45.455 1.31 0.00 38.89 4.26
2431 2629 6.839124 TGTATGTTGGATGCAAAGAAAGAT 57.161 33.333 0.00 0.00 0.00 2.40
2663 2862 8.845413 AGATCCTATCATGCAAGAAGAAATAC 57.155 34.615 0.00 0.00 0.00 1.89
2820 3021 4.218417 CCAAAGTTTCCTAACATGTCCCAG 59.782 45.833 0.00 0.00 36.70 4.45
2882 3084 4.532834 ACAAGTGCTCCAAAACTAAGGAA 58.467 39.130 0.00 0.00 32.57 3.36
3167 3596 1.550524 ACAAAGAGACGCAGCAGGATA 59.449 47.619 0.00 0.00 0.00 2.59
3218 3647 7.873719 TTTCATCAAGTTCAACTCCAAACTA 57.126 32.000 0.00 0.00 34.71 2.24
3306 3736 8.203681 AGATGATGAGAATGAATGGATCACTA 57.796 34.615 0.00 0.00 41.93 2.74
3351 3787 7.000472 TGAAGAACAAGGTGAAGATCAAGATT 59.000 34.615 0.00 0.00 0.00 2.40
3396 3832 2.024176 TGCTGGACCAGGAACTTCTA 57.976 50.000 23.09 0.00 34.60 2.10
3605 4056 5.003804 TCTATCCTTTCCTGTGTGCTTTTC 58.996 41.667 0.00 0.00 0.00 2.29
3774 4233 9.429359 CAGATCTCTTCTGTACTTGTTATGTTT 57.571 33.333 0.00 0.00 45.79 2.83
3824 4283 8.555166 TTTCTACTGAAAATACGCTGTTTTTG 57.445 30.769 0.00 0.00 39.02 2.44
3960 4421 3.904479 GCCAGCCGCTAAATGCCC 61.904 66.667 0.00 0.00 38.78 5.36
3994 4455 9.679661 TGATCTGAAACTTTGGTTATAATGCTA 57.320 29.630 0.00 0.00 34.90 3.49
4040 4501 4.889409 TCACCTTCTTCATGATAAATGCCC 59.111 41.667 0.00 0.00 0.00 5.36
4041 4502 4.891756 CACCTTCTTCATGATAAATGCCCT 59.108 41.667 0.00 0.00 0.00 5.19
4042 4503 6.064060 CACCTTCTTCATGATAAATGCCCTA 58.936 40.000 0.00 0.00 0.00 3.53
4067 4528 1.089920 GGCTGCATCACACTTACTGG 58.910 55.000 0.50 0.00 0.00 4.00
4211 4673 1.825281 CGGGATCATCCTCAGCTCCC 61.825 65.000 2.93 0.00 41.86 4.30
4245 4707 3.795101 TGAGTTCGACGTGAAAACTTCTC 59.205 43.478 0.00 1.11 38.60 2.87
4275 4737 4.580580 GTCACATTTTCTGACCAAGTCCTT 59.419 41.667 0.00 0.00 33.23 3.36
4467 4929 1.134907 CAGCTCCCCATTGACAATTGC 60.135 52.381 5.05 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 36 1.152355 CTGTTTGGGGCCTTTGGGA 60.152 57.895 0.84 0.00 33.58 4.37
70 72 8.895737 GGAGGTTTTATATACCATCACGAAAAA 58.104 33.333 7.16 0.00 38.16 1.94
71 73 8.269317 AGGAGGTTTTATATACCATCACGAAAA 58.731 33.333 7.16 0.00 38.16 2.29
90 92 2.306219 GCTAGGTTTTCTGGAGGAGGTT 59.694 50.000 0.00 0.00 0.00 3.50
184 191 1.664649 CCAACGAAGCAGCAGTCGA 60.665 57.895 21.55 0.00 39.64 4.20
207 215 1.729586 CTCCCCCGGAATCCAATCTA 58.270 55.000 0.73 0.00 0.00 1.98
405 420 2.392662 TCTGAATCCCAGAGCCTACAG 58.607 52.381 0.00 0.00 46.38 2.74
431 446 5.928976 TGAGTATGGAATCGGAATCAACAT 58.071 37.500 0.00 0.00 0.00 2.71
467 644 8.584157 TGAATCAACAAACAAATAAGCTATGGT 58.416 29.630 0.00 0.00 0.00 3.55
1188 1376 6.950842 TGCTTCATCTTTCCTTGAGATCTTA 58.049 36.000 0.00 0.00 31.66 2.10
1189 1377 5.813383 TGCTTCATCTTTCCTTGAGATCTT 58.187 37.500 0.00 0.00 31.66 2.40
1190 1378 5.432680 TGCTTCATCTTTCCTTGAGATCT 57.567 39.130 0.00 0.00 31.66 2.75
1237 1425 2.030628 TGACGTCACTTCTGCGTATTGA 60.031 45.455 15.76 0.00 39.06 2.57
1578 1770 1.961277 CGCTCCAACCGCTTCAAGT 60.961 57.895 0.00 0.00 0.00 3.16
1956 2150 4.508405 CCAAAATAGGGAGGGACACTTCAA 60.508 45.833 0.00 0.00 32.74 2.69
1962 2156 3.052944 CCATTCCAAAATAGGGAGGGACA 60.053 47.826 0.00 0.00 35.46 4.02
2039 2233 3.296322 TTGGCAATGGTTTGTTCGATC 57.704 42.857 0.00 0.00 35.17 3.69
2167 2363 7.329226 GCAAGCTTTTCAAGTTCAAATATGCTA 59.671 33.333 0.00 0.00 0.00 3.49
2186 2382 3.608316 TTTTTGTTGTCCTGCAAGCTT 57.392 38.095 0.00 0.00 37.83 3.74
2330 2528 4.510571 GCCATTGGCTCAAAGAAATTGAT 58.489 39.130 20.66 0.00 46.62 2.57
2431 2629 4.221924 TCATTGTCAAACCTCACGGAGATA 59.778 41.667 2.84 0.00 0.00 1.98
2663 2862 5.444663 TGATAGTGGTCAATCTCATCGAG 57.555 43.478 0.00 0.00 0.00 4.04
2820 3021 6.701400 ACCATTTAGCTTCAACATCAAACAAC 59.299 34.615 0.00 0.00 0.00 3.32
2882 3084 1.891150 CAAGAATCCTTGCAGCCAAGT 59.109 47.619 2.61 0.00 45.57 3.16
2967 3294 6.723298 TGCATTTAAGTGGAAAGAAGGAAA 57.277 33.333 0.00 0.00 0.00 3.13
3007 3334 6.882610 AATTGACAGCATCACAAAGTCTTA 57.117 33.333 0.00 0.00 36.92 2.10
3085 3480 2.751259 CAGCAAGCATAACATCACCAGT 59.249 45.455 0.00 0.00 0.00 4.00
3167 3596 3.332919 GTCACTCATCTTGTCATGCAGT 58.667 45.455 0.00 0.00 0.00 4.40
3218 3647 5.803461 GCGTTTGTTTAGTTTCTTGTCCTTT 59.197 36.000 0.00 0.00 0.00 3.11
3306 3736 2.949177 TCACCATTTGGCACTACACT 57.051 45.000 0.00 0.00 39.32 3.55
3351 3787 5.277974 GCGAGCTTGCATATGGAATTTCTTA 60.278 40.000 21.53 0.00 34.15 2.10
3396 3832 9.907229 CCTCTTCCTTTTAAGTGGATTAATAGT 57.093 33.333 0.00 0.00 40.86 2.12
3605 4056 8.057812 CACAAAGTCTTCAGAATTCATTTGTG 57.942 34.615 18.88 18.88 45.36 3.33
3823 4282 9.407380 ACTAATACATGTGCATATTTTTCTCCA 57.593 29.630 9.11 0.00 0.00 3.86
3927 4388 3.966215 GCTCTGTGCCAACGCTAA 58.034 55.556 0.00 0.00 35.36 3.09
3960 4421 2.969628 AGTTTCAGATCACGGGCTAG 57.030 50.000 0.00 0.00 0.00 3.42
3994 4455 1.698506 TCCGTTTTGGCTTTCCACAT 58.301 45.000 0.00 0.00 43.33 3.21
4211 4673 2.373938 GAACTCATGTTCCGGCTCG 58.626 57.895 0.00 0.00 44.93 5.03
4227 4689 3.513662 TGTGAGAAGTTTTCACGTCGAA 58.486 40.909 18.59 1.62 46.14 3.71
4245 4707 3.548014 GGTCAGAAAATGTGACGGTTGTG 60.548 47.826 2.13 0.00 44.52 3.33
4467 4929 1.470979 CCCGACGGTCTAAGTCAATGG 60.471 57.143 13.94 0.00 38.46 3.16
4497 4959 1.138661 CTGAGGATGAGACCTTGGCTC 59.861 57.143 0.00 0.00 40.73 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.