Multiple sequence alignment - TraesCS5D01G289000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G289000 chr5D 100.000 2426 0 0 1 2426 387988301 387990726 0.000000e+00 4481.0
1 TraesCS5D01G289000 chr5D 97.183 213 6 0 1 213 374666956 374667168 6.380000e-96 361.0
2 TraesCS5D01G289000 chr5D 93.333 180 12 0 209 388 374675771 374675950 1.430000e-67 267.0
3 TraesCS5D01G289000 chr5D 92.806 139 7 3 646 784 393056267 393056402 5.290000e-47 198.0
4 TraesCS5D01G289000 chr5D 84.762 105 16 0 1177 1281 387960858 387960962 3.300000e-19 106.0
5 TraesCS5D01G289000 chr5B 91.862 897 58 13 780 1667 466615945 466616835 0.000000e+00 1238.0
6 TraesCS5D01G289000 chr5B 97.680 388 9 0 1 388 153892309 153892696 0.000000e+00 667.0
7 TraesCS5D01G289000 chr5B 92.636 258 10 1 386 643 466615694 466615942 1.770000e-96 363.0
8 TraesCS5D01G289000 chr5B 83.598 189 9 8 2247 2423 466618543 466618721 8.980000e-35 158.0
9 TraesCS5D01G289000 chr5B 85.526 152 12 6 2066 2215 466616824 466616967 1.500000e-32 150.0
10 TraesCS5D01G289000 chr5B 86.607 112 15 0 1177 1288 466525623 466525734 9.110000e-25 124.0
11 TraesCS5D01G289000 chr5B 89.286 56 4 2 1694 1747 506784123 506784178 4.330000e-08 69.4
12 TraesCS5D01G289000 chr5A 91.877 554 41 3 945 1494 491162677 491163230 0.000000e+00 771.0
13 TraesCS5D01G289000 chr5A 90.493 284 13 6 386 655 491162270 491162553 1.770000e-96 363.0
14 TraesCS5D01G289000 chr5A 90.756 119 10 1 787 905 491162556 491162673 8.980000e-35 158.0
15 TraesCS5D01G289000 chr5A 84.762 105 16 0 1177 1281 491093848 491093952 3.300000e-19 106.0
16 TraesCS5D01G289000 chr6D 98.969 388 4 0 1 388 341383823 341384210 0.000000e+00 695.0
17 TraesCS5D01G289000 chr6D 97.638 127 3 0 657 783 271601220 271601094 4.060000e-53 219.0
18 TraesCS5D01G289000 chr1D 90.625 384 36 0 5 388 86515200 86515583 5.980000e-141 510.0
19 TraesCS5D01G289000 chr1D 87.234 94 12 0 1178 1271 10955130 10955037 9.170000e-20 108.0
20 TraesCS5D01G289000 chr7A 89.717 389 38 2 1 388 290623881 290624268 1.680000e-136 496.0
21 TraesCS5D01G289000 chr7A 91.489 141 11 1 650 790 14208385 14208246 2.460000e-45 193.0
22 TraesCS5D01G289000 chr7A 83.333 114 19 0 1919 2032 17719191 17719304 3.300000e-19 106.0
23 TraesCS5D01G289000 chr4A 95.185 270 11 2 1 270 35571922 35571655 2.230000e-115 425.0
24 TraesCS5D01G289000 chr4A 95.161 124 6 0 265 388 35571351 35571228 1.900000e-46 196.0
25 TraesCS5D01G289000 chr7B 81.988 322 52 4 1750 2065 733362172 733362493 3.980000e-68 268.0
26 TraesCS5D01G289000 chr7B 94.030 134 8 0 651 784 489143487 489143620 1.140000e-48 204.0
27 TraesCS5D01G289000 chr4B 84.974 193 27 1 2 194 74262516 74262706 6.840000e-46 195.0
28 TraesCS5D01G289000 chr4D 92.537 134 10 0 651 784 106682246 106682379 2.460000e-45 193.0
29 TraesCS5D01G289000 chr4D 90.411 146 10 4 653 795 259845253 259845397 3.180000e-44 189.0
30 TraesCS5D01G289000 chr3B 91.367 139 11 1 654 791 236361944 236362082 3.180000e-44 189.0
31 TraesCS5D01G289000 chr3B 79.856 139 26 2 1927 2064 47204288 47204151 1.530000e-17 100.0
32 TraesCS5D01G289000 chr3B 93.220 59 2 2 1695 1753 114875941 114875885 4.300000e-13 86.1
33 TraesCS5D01G289000 chr3D 90.278 144 10 4 642 785 548254415 548254554 4.120000e-43 185.0
34 TraesCS5D01G289000 chr2D 88.742 151 14 3 643 791 351287781 351287930 5.330000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G289000 chr5D 387988301 387990726 2425 False 4481.000000 4481 100.0000 1 2426 1 chr5D.!!$F4 2425
1 TraesCS5D01G289000 chr5B 466615694 466618721 3027 False 477.250000 1238 88.4055 386 2423 4 chr5B.!!$F4 2037
2 TraesCS5D01G289000 chr5A 491162270 491163230 960 False 430.666667 771 91.0420 386 1494 3 chr5A.!!$F2 1108
3 TraesCS5D01G289000 chr4A 35571228 35571922 694 True 310.500000 425 95.1730 1 388 2 chr4A.!!$R1 387

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 232 0.462759 GCTCTTTAGGCGCTGTCCAT 60.463 55.0 7.64 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1839 2172 0.031585 CCACGGTCGTCAAGTCTGAA 59.968 55.0 0.0 0.0 31.88 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.118300 CTCAAGATAGAAAGCATCCTTGTTAAT 57.882 33.333 0.00 0.00 0.00 1.40
32 33 8.896744 TCAAGATAGAAAGCATCCTTGTTAATG 58.103 33.333 0.00 0.00 0.00 1.90
33 34 7.269477 AGATAGAAAGCATCCTTGTTAATGC 57.731 36.000 0.00 0.00 46.84 3.56
102 103 2.424601 CCATAGTTGTTGATGGCCACTG 59.575 50.000 8.16 0.00 36.45 3.66
142 143 3.870419 ACACCAATTTGCACATTTGTCAC 59.130 39.130 0.00 0.00 0.00 3.67
144 145 2.475864 CCAATTTGCACATTTGTCACCG 59.524 45.455 0.00 0.00 0.00 4.94
150 151 1.304254 CACATTTGTCACCGTGACCA 58.696 50.000 25.39 14.46 46.40 4.02
197 198 2.513753 CCACCTTTTGTACCATCAGCA 58.486 47.619 0.00 0.00 0.00 4.41
222 223 1.256812 TTGGGCAAAGCTCTTTAGGC 58.743 50.000 0.00 3.06 0.00 3.93
231 232 0.462759 GCTCTTTAGGCGCTGTCCAT 60.463 55.000 7.64 0.00 0.00 3.41
233 234 0.901827 TCTTTAGGCGCTGTCCATCA 59.098 50.000 7.64 0.00 0.00 3.07
290 600 3.944015 GCTTTGACTCTTGGATGCATACT 59.056 43.478 11.02 0.00 0.00 2.12
300 610 4.406648 TGGATGCATACTAGTTGACAGG 57.593 45.455 11.02 0.00 0.00 4.00
335 645 3.709880 TTCATGGACGGTAGCGCGG 62.710 63.158 15.35 0.00 0.00 6.46
352 662 1.154205 CGGCGATCTGGGCAGTTTAG 61.154 60.000 0.00 0.00 0.00 1.85
368 678 2.676342 GTTTAGCCCACGTACATTCCAG 59.324 50.000 0.00 0.00 0.00 3.86
402 712 4.543590 AGATTTGACGTCAGATCTTGGT 57.456 40.909 34.13 19.70 42.87 3.67
448 760 4.495349 CCGTTGAATTGAATGAGCTAGCTG 60.495 45.833 24.99 1.63 0.00 4.24
551 866 4.815533 AATCTTCTGAACTGCAGCTAGA 57.184 40.909 15.27 12.16 44.52 2.43
643 967 1.079612 TCAGCTGTGTCATCGCCAG 60.080 57.895 14.67 0.00 0.00 4.85
649 973 2.743938 CTGTGTCATCGCCAGTATACC 58.256 52.381 0.00 0.00 0.00 2.73
655 979 6.034591 GTGTCATCGCCAGTATACCATATAC 58.965 44.000 0.00 0.00 0.00 1.47
656 980 5.949952 TGTCATCGCCAGTATACCATATACT 59.050 40.000 0.00 3.18 35.39 2.12
657 981 7.066645 GTGTCATCGCCAGTATACCATATACTA 59.933 40.741 7.94 0.00 33.45 1.82
658 982 7.066645 TGTCATCGCCAGTATACCATATACTAC 59.933 40.741 7.94 4.07 33.45 2.73
659 983 7.282675 GTCATCGCCAGTATACCATATACTACT 59.717 40.741 7.94 0.00 33.45 2.57
660 984 7.832685 TCATCGCCAGTATACCATATACTACTT 59.167 37.037 7.94 0.00 33.45 2.24
661 985 7.621428 TCGCCAGTATACCATATACTACTTC 57.379 40.000 7.94 0.00 33.45 3.01
662 986 6.600822 TCGCCAGTATACCATATACTACTTCC 59.399 42.308 7.94 0.00 33.45 3.46
663 987 6.602406 CGCCAGTATACCATATACTACTTCCT 59.398 42.308 7.94 0.00 33.45 3.36
664 988 7.201714 CGCCAGTATACCATATACTACTTCCTC 60.202 44.444 7.94 0.00 33.45 3.71
665 989 7.068470 GCCAGTATACCATATACTACTTCCTCC 59.932 44.444 7.94 0.00 33.45 4.30
666 990 7.282675 CCAGTATACCATATACTACTTCCTCCG 59.717 44.444 7.94 0.00 33.45 4.63
667 991 7.828223 CAGTATACCATATACTACTTCCTCCGT 59.172 40.741 7.94 0.00 33.45 4.69
668 992 8.046107 AGTATACCATATACTACTTCCTCCGTC 58.954 40.741 6.71 0.00 33.45 4.79
669 993 5.321934 ACCATATACTACTTCCTCCGTCT 57.678 43.478 0.00 0.00 0.00 4.18
670 994 5.703310 ACCATATACTACTTCCTCCGTCTT 58.297 41.667 0.00 0.00 0.00 3.01
671 995 6.845908 ACCATATACTACTTCCTCCGTCTTA 58.154 40.000 0.00 0.00 0.00 2.10
672 996 7.293073 ACCATATACTACTTCCTCCGTCTTAA 58.707 38.462 0.00 0.00 0.00 1.85
673 997 7.781693 ACCATATACTACTTCCTCCGTCTTAAA 59.218 37.037 0.00 0.00 0.00 1.52
674 998 8.636213 CCATATACTACTTCCTCCGTCTTAAAA 58.364 37.037 0.00 0.00 0.00 1.52
678 1002 7.242322 ACTACTTCCTCCGTCTTAAAATTCT 57.758 36.000 0.00 0.00 0.00 2.40
679 1003 7.677892 ACTACTTCCTCCGTCTTAAAATTCTT 58.322 34.615 0.00 0.00 0.00 2.52
680 1004 6.803154 ACTTCCTCCGTCTTAAAATTCTTG 57.197 37.500 0.00 0.00 0.00 3.02
681 1005 6.296803 ACTTCCTCCGTCTTAAAATTCTTGT 58.703 36.000 0.00 0.00 0.00 3.16
682 1006 6.427242 ACTTCCTCCGTCTTAAAATTCTTGTC 59.573 38.462 0.00 0.00 0.00 3.18
683 1007 6.110411 TCCTCCGTCTTAAAATTCTTGTCT 57.890 37.500 0.00 0.00 0.00 3.41
684 1008 6.531021 TCCTCCGTCTTAAAATTCTTGTCTT 58.469 36.000 0.00 0.00 0.00 3.01
685 1009 7.673180 TCCTCCGTCTTAAAATTCTTGTCTTA 58.327 34.615 0.00 0.00 0.00 2.10
686 1010 7.817962 TCCTCCGTCTTAAAATTCTTGTCTTAG 59.182 37.037 0.00 0.00 0.00 2.18
687 1011 7.817962 CCTCCGTCTTAAAATTCTTGTCTTAGA 59.182 37.037 0.00 0.00 0.00 2.10
688 1012 9.372369 CTCCGTCTTAAAATTCTTGTCTTAGAT 57.628 33.333 0.00 0.00 0.00 1.98
689 1013 9.720769 TCCGTCTTAAAATTCTTGTCTTAGATT 57.279 29.630 0.00 0.00 0.00 2.40
774 1098 9.463443 AAATTTAAGACAAGAATTTTGAGACGG 57.537 29.630 0.00 0.00 31.00 4.79
775 1099 7.795482 TTTAAGACAAGAATTTTGAGACGGA 57.205 32.000 7.18 0.00 0.00 4.69
776 1100 5.931441 AAGACAAGAATTTTGAGACGGAG 57.069 39.130 7.18 0.00 0.00 4.63
777 1101 4.319177 AGACAAGAATTTTGAGACGGAGG 58.681 43.478 7.18 0.00 0.00 4.30
778 1102 3.412386 ACAAGAATTTTGAGACGGAGGG 58.588 45.455 7.18 0.00 0.00 4.30
779 1103 3.072476 ACAAGAATTTTGAGACGGAGGGA 59.928 43.478 7.18 0.00 0.00 4.20
780 1104 3.618690 AGAATTTTGAGACGGAGGGAG 57.381 47.619 0.00 0.00 0.00 4.30
781 1105 2.907042 AGAATTTTGAGACGGAGGGAGT 59.093 45.455 0.00 0.00 0.00 3.85
782 1106 4.094476 AGAATTTTGAGACGGAGGGAGTA 58.906 43.478 0.00 0.00 0.00 2.59
783 1107 3.889520 ATTTTGAGACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
784 1108 2.297698 TTTGAGACGGAGGGAGTACA 57.702 50.000 0.00 0.00 0.00 2.90
785 1109 1.835494 TTGAGACGGAGGGAGTACAG 58.165 55.000 0.00 0.00 0.00 2.74
791 1115 3.457380 AGACGGAGGGAGTACAGTACATA 59.543 47.826 13.37 0.00 0.00 2.29
828 1152 1.209275 GATGCGTGCACTAGCTACCG 61.209 60.000 16.19 0.00 42.74 4.02
858 1182 0.803117 TCAGCTAGTCAACGACTCGG 59.197 55.000 2.98 0.00 42.40 4.63
863 1187 1.132453 CTAGTCAACGACTCGGATGCA 59.868 52.381 2.98 0.00 42.40 3.96
867 1191 4.796231 ACGACTCGGATGCACGGC 62.796 66.667 2.98 0.00 0.00 5.68
871 1195 2.512286 CTCGGATGCACGGCACAT 60.512 61.111 0.50 0.00 43.04 3.21
934 1258 3.243737 CGAATCATCGGTTGATCCACCTA 60.244 47.826 13.72 3.56 44.51 3.08
936 1260 4.982241 ATCATCGGTTGATCCACCTAAT 57.018 40.909 13.72 4.93 41.36 1.73
937 1261 6.433847 AATCATCGGTTGATCCACCTAATA 57.566 37.500 13.72 0.00 44.51 0.98
938 1262 5.209818 TCATCGGTTGATCCACCTAATAC 57.790 43.478 13.72 0.00 34.22 1.89
939 1263 4.899457 TCATCGGTTGATCCACCTAATACT 59.101 41.667 13.72 0.00 34.22 2.12
941 1265 5.272283 TCGGTTGATCCACCTAATACTTC 57.728 43.478 13.72 0.00 34.22 3.01
942 1266 4.712829 TCGGTTGATCCACCTAATACTTCA 59.287 41.667 13.72 0.00 34.22 3.02
943 1267 5.188163 TCGGTTGATCCACCTAATACTTCAA 59.812 40.000 13.72 0.00 34.22 2.69
945 1269 7.070198 TCGGTTGATCCACCTAATACTTCAATA 59.930 37.037 13.72 0.00 34.22 1.90
946 1270 7.385205 CGGTTGATCCACCTAATACTTCAATAG 59.615 40.741 13.72 0.00 34.22 1.73
947 1271 7.173390 GGTTGATCCACCTAATACTTCAATAGC 59.827 40.741 8.73 0.00 33.50 2.97
948 1272 7.373617 TGATCCACCTAATACTTCAATAGCA 57.626 36.000 0.00 0.00 0.00 3.49
1041 1371 3.256383 CAGCACATTGACTTGGGATTTGA 59.744 43.478 0.00 0.00 0.00 2.69
1045 1375 3.256631 ACATTGACTTGGGATTTGAGCAC 59.743 43.478 0.00 0.00 0.00 4.40
1048 1378 2.225091 TGACTTGGGATTTGAGCACCAT 60.225 45.455 0.00 0.00 32.18 3.55
1065 1396 7.066163 TGAGCACCATATCACACAAGAAAATAG 59.934 37.037 0.00 0.00 0.00 1.73
1170 1501 3.649277 CTCGGAGAAGGTGGCCACG 62.649 68.421 29.08 16.25 34.09 4.94
1307 1638 0.837272 ACCATGGACTACAATCCCCG 59.163 55.000 21.47 0.00 38.06 5.73
1353 1684 2.125326 CGATGAGACCCCCTACGCA 61.125 63.158 0.00 0.00 0.00 5.24
1394 1725 6.698999 ACCTACACGGCTACACATAAGTGC 62.699 50.000 0.00 0.00 42.64 4.40
1497 1828 6.603201 TGCTAGCTCCTTAATTTGCATTTACT 59.397 34.615 17.23 0.00 0.00 2.24
1498 1829 7.135467 GCTAGCTCCTTAATTTGCATTTACTC 58.865 38.462 7.70 0.00 0.00 2.59
1502 1833 6.095440 GCTCCTTAATTTGCATTTACTCTCCA 59.905 38.462 0.00 0.00 0.00 3.86
1507 1838 8.810652 TTAATTTGCATTTACTCTCCACAAAC 57.189 30.769 0.00 0.00 0.00 2.93
1509 1840 7.759489 ATTTGCATTTACTCTCCACAAACTA 57.241 32.000 0.00 0.00 0.00 2.24
1555 1886 7.220030 TCTGCTCCATACAAGGATTTCTTATC 58.780 38.462 0.00 0.00 36.99 1.75
1602 1935 3.331150 TGTATAACCACAGTTGCTTCGG 58.669 45.455 0.00 0.00 36.68 4.30
1625 1958 9.675464 TCGGAATCCACATTAGTATTTAAACTT 57.325 29.630 0.00 0.00 0.00 2.66
1661 1994 8.827832 TCTGGATATCTTTCACATCCATTTTT 57.172 30.769 2.05 0.00 45.44 1.94
1685 2018 5.337578 TTTTTGAAGTTTCAACTGGGGAG 57.662 39.130 6.79 0.00 45.99 4.30
1686 2019 2.656947 TGAAGTTTCAACTGGGGAGG 57.343 50.000 0.00 0.00 39.66 4.30
1687 2020 1.144913 TGAAGTTTCAACTGGGGAGGG 59.855 52.381 0.00 0.00 39.66 4.30
1688 2021 0.482887 AAGTTTCAACTGGGGAGGGG 59.517 55.000 0.00 0.00 39.66 4.79
1689 2022 1.076727 GTTTCAACTGGGGAGGGGG 59.923 63.158 0.00 0.00 0.00 5.40
1714 2047 3.916184 GGAGTTCCCCCACCTGAA 58.084 61.111 0.00 0.00 0.00 3.02
1715 2048 2.398919 GGAGTTCCCCCACCTGAAT 58.601 57.895 0.00 0.00 0.00 2.57
1716 2049 1.591768 GGAGTTCCCCCACCTGAATA 58.408 55.000 0.00 0.00 0.00 1.75
1717 2050 2.136026 GGAGTTCCCCCACCTGAATAT 58.864 52.381 0.00 0.00 0.00 1.28
1718 2051 3.323775 GGAGTTCCCCCACCTGAATATA 58.676 50.000 0.00 0.00 0.00 0.86
1719 2052 3.916989 GGAGTTCCCCCACCTGAATATAT 59.083 47.826 0.00 0.00 0.00 0.86
1720 2053 4.354087 GGAGTTCCCCCACCTGAATATATT 59.646 45.833 0.00 0.00 0.00 1.28
1721 2054 5.316987 GAGTTCCCCCACCTGAATATATTG 58.683 45.833 1.78 0.00 0.00 1.90
1722 2055 4.981647 AGTTCCCCCACCTGAATATATTGA 59.018 41.667 1.78 0.00 0.00 2.57
1723 2056 5.616986 AGTTCCCCCACCTGAATATATTGAT 59.383 40.000 1.78 0.00 0.00 2.57
1724 2057 5.779241 TCCCCCACCTGAATATATTGATC 57.221 43.478 1.78 0.00 0.00 2.92
1725 2058 5.169438 TCCCCCACCTGAATATATTGATCA 58.831 41.667 1.78 0.00 0.00 2.92
1726 2059 5.614831 TCCCCCACCTGAATATATTGATCAA 59.385 40.000 11.26 11.26 0.00 2.57
1727 2060 6.103946 TCCCCCACCTGAATATATTGATCAAA 59.896 38.462 13.09 2.57 0.00 2.69
1728 2061 6.435277 CCCCCACCTGAATATATTGATCAAAG 59.565 42.308 13.09 3.15 0.00 2.77
1729 2062 7.006509 CCCCACCTGAATATATTGATCAAAGT 58.993 38.462 13.09 6.70 0.00 2.66
1730 2063 7.040201 CCCCACCTGAATATATTGATCAAAGTG 60.040 40.741 13.09 8.57 31.88 3.16
1731 2064 7.040201 CCCACCTGAATATATTGATCAAAGTGG 60.040 40.741 13.09 18.01 42.07 4.00
1732 2065 7.040201 CCACCTGAATATATTGATCAAAGTGGG 60.040 40.741 13.09 9.11 40.48 4.61
1733 2066 6.491403 ACCTGAATATATTGATCAAAGTGGGC 59.509 38.462 13.09 2.29 0.00 5.36
1734 2067 6.718454 CCTGAATATATTGATCAAAGTGGGCT 59.282 38.462 13.09 0.00 0.00 5.19
1735 2068 7.884877 CCTGAATATATTGATCAAAGTGGGCTA 59.115 37.037 13.09 0.00 0.00 3.93
1736 2069 9.288576 CTGAATATATTGATCAAAGTGGGCTAA 57.711 33.333 13.09 0.00 0.00 3.09
1737 2070 9.639563 TGAATATATTGATCAAAGTGGGCTAAA 57.360 29.630 13.09 0.00 0.00 1.85
1741 2074 5.659440 TTGATCAAAGTGGGCTAAAATCC 57.341 39.130 5.45 0.00 0.00 3.01
1742 2075 4.023291 TGATCAAAGTGGGCTAAAATCCC 58.977 43.478 0.00 0.00 44.17 3.85
1749 2082 1.239347 GGGCTAAAATCCCAGATCGC 58.761 55.000 0.00 0.00 43.37 4.58
1750 2083 1.476833 GGGCTAAAATCCCAGATCGCA 60.477 52.381 0.00 0.00 43.37 5.10
1751 2084 1.604278 GGCTAAAATCCCAGATCGCAC 59.396 52.381 0.00 0.00 0.00 5.34
1752 2085 2.288666 GCTAAAATCCCAGATCGCACA 58.711 47.619 0.00 0.00 0.00 4.57
1753 2086 2.032178 GCTAAAATCCCAGATCGCACAC 59.968 50.000 0.00 0.00 0.00 3.82
1754 2087 1.086696 AAAATCCCAGATCGCACACG 58.913 50.000 0.00 0.00 42.01 4.49
1763 2096 2.415426 TCGCACACGAGCAAGTGA 59.585 55.556 16.74 0.00 45.12 3.41
1764 2097 1.949133 TCGCACACGAGCAAGTGAC 60.949 57.895 16.74 8.37 45.12 3.67
1765 2098 2.546321 GCACACGAGCAAGTGACG 59.454 61.111 16.74 9.16 44.43 4.35
1766 2099 2.943345 GCACACGAGCAAGTGACGG 61.943 63.158 16.74 7.96 44.43 4.79
1767 2100 2.661866 ACACGAGCAAGTGACGGC 60.662 61.111 16.74 0.00 44.43 5.68
1768 2101 2.356313 CACGAGCAAGTGACGGCT 60.356 61.111 4.53 4.53 44.43 5.52
1769 2102 2.356313 ACGAGCAAGTGACGGCTG 60.356 61.111 9.41 0.00 41.22 4.85
1770 2103 2.356313 CGAGCAAGTGACGGCTGT 60.356 61.111 9.41 0.00 41.22 4.40
1771 2104 1.956170 CGAGCAAGTGACGGCTGTT 60.956 57.895 9.41 0.00 41.22 3.16
1772 2105 1.571460 GAGCAAGTGACGGCTGTTG 59.429 57.895 9.41 0.00 41.22 3.33
1773 2106 1.153168 AGCAAGTGACGGCTGTTGT 60.153 52.632 0.00 0.00 39.30 3.32
1774 2107 1.160329 AGCAAGTGACGGCTGTTGTC 61.160 55.000 0.00 0.00 39.30 3.18
1775 2108 1.160329 GCAAGTGACGGCTGTTGTCT 61.160 55.000 0.00 0.00 37.26 3.41
1776 2109 0.861837 CAAGTGACGGCTGTTGTCTC 59.138 55.000 0.00 0.00 37.26 3.36
1777 2110 0.753262 AAGTGACGGCTGTTGTCTCT 59.247 50.000 0.00 0.00 40.73 3.10
1778 2111 1.617322 AGTGACGGCTGTTGTCTCTA 58.383 50.000 0.00 0.00 38.14 2.43
1779 2112 1.961394 AGTGACGGCTGTTGTCTCTAA 59.039 47.619 0.00 0.00 38.14 2.10
1780 2113 2.364324 AGTGACGGCTGTTGTCTCTAAA 59.636 45.455 0.00 0.00 38.14 1.85
1781 2114 3.128349 GTGACGGCTGTTGTCTCTAAAA 58.872 45.455 0.00 0.00 37.26 1.52
1782 2115 3.184581 GTGACGGCTGTTGTCTCTAAAAG 59.815 47.826 0.00 0.00 37.26 2.27
1783 2116 3.069016 TGACGGCTGTTGTCTCTAAAAGA 59.931 43.478 0.00 0.00 37.26 2.52
1806 2139 4.389576 GCGTTGCGGTGCTTCCAG 62.390 66.667 0.00 0.00 35.57 3.86
1807 2140 2.664851 CGTTGCGGTGCTTCCAGA 60.665 61.111 0.00 0.00 35.57 3.86
1808 2141 2.671177 CGTTGCGGTGCTTCCAGAG 61.671 63.158 0.00 0.00 35.57 3.35
1820 2153 2.281970 CCAGAGCTGGCAGCAACA 60.282 61.111 38.09 0.00 45.56 3.33
1821 2154 2.623915 CCAGAGCTGGCAGCAACAC 61.624 63.158 38.09 25.04 45.56 3.32
1822 2155 1.895231 CAGAGCTGGCAGCAACACA 60.895 57.895 38.09 0.00 45.56 3.72
1823 2156 1.152902 AGAGCTGGCAGCAACACAA 60.153 52.632 38.09 0.00 45.56 3.33
1824 2157 1.008079 GAGCTGGCAGCAACACAAC 60.008 57.895 38.09 17.09 45.56 3.32
1825 2158 1.727511 GAGCTGGCAGCAACACAACA 61.728 55.000 38.09 0.00 45.56 3.33
1826 2159 1.111116 AGCTGGCAGCAACACAACAT 61.111 50.000 38.09 14.11 45.56 2.71
1827 2160 0.942410 GCTGGCAGCAACACAACATG 60.942 55.000 33.33 0.00 41.89 3.21
1828 2161 0.319211 CTGGCAGCAACACAACATGG 60.319 55.000 0.00 0.00 0.00 3.66
1829 2162 0.754587 TGGCAGCAACACAACATGGA 60.755 50.000 0.00 0.00 0.00 3.41
1830 2163 0.038892 GGCAGCAACACAACATGGAG 60.039 55.000 0.00 0.00 0.00 3.86
1831 2164 0.953727 GCAGCAACACAACATGGAGA 59.046 50.000 0.00 0.00 0.00 3.71
1832 2165 1.337703 GCAGCAACACAACATGGAGAA 59.662 47.619 0.00 0.00 0.00 2.87
1833 2166 2.859806 GCAGCAACACAACATGGAGAAC 60.860 50.000 0.00 0.00 0.00 3.01
1834 2167 2.620115 CAGCAACACAACATGGAGAACT 59.380 45.455 0.00 0.00 0.00 3.01
1835 2168 2.880890 AGCAACACAACATGGAGAACTC 59.119 45.455 0.00 0.00 0.00 3.01
1836 2169 2.618241 GCAACACAACATGGAGAACTCA 59.382 45.455 0.00 0.00 0.00 3.41
1837 2170 3.066621 GCAACACAACATGGAGAACTCAA 59.933 43.478 0.00 0.00 0.00 3.02
1838 2171 4.601019 CAACACAACATGGAGAACTCAAC 58.399 43.478 0.00 0.00 0.00 3.18
1839 2172 4.156455 ACACAACATGGAGAACTCAACT 57.844 40.909 0.00 0.00 0.00 3.16
1840 2173 4.526970 ACACAACATGGAGAACTCAACTT 58.473 39.130 0.00 0.00 0.00 2.66
1841 2174 4.576463 ACACAACATGGAGAACTCAACTTC 59.424 41.667 0.00 0.00 0.00 3.01
1842 2175 4.576053 CACAACATGGAGAACTCAACTTCA 59.424 41.667 0.00 0.00 0.00 3.02
1843 2176 4.818546 ACAACATGGAGAACTCAACTTCAG 59.181 41.667 0.00 0.00 0.00 3.02
1844 2177 4.963318 ACATGGAGAACTCAACTTCAGA 57.037 40.909 0.00 0.00 0.00 3.27
1845 2178 4.636249 ACATGGAGAACTCAACTTCAGAC 58.364 43.478 0.00 0.00 0.00 3.51
1846 2179 4.346418 ACATGGAGAACTCAACTTCAGACT 59.654 41.667 0.00 0.00 0.00 3.24
1847 2180 5.163258 ACATGGAGAACTCAACTTCAGACTT 60.163 40.000 0.00 0.00 0.00 3.01
1848 2181 4.697514 TGGAGAACTCAACTTCAGACTTG 58.302 43.478 4.23 0.00 0.00 3.16
1849 2182 4.405680 TGGAGAACTCAACTTCAGACTTGA 59.594 41.667 4.23 0.00 0.00 3.02
1850 2183 4.747605 GGAGAACTCAACTTCAGACTTGAC 59.252 45.833 4.23 0.00 31.71 3.18
1851 2184 4.363999 AGAACTCAACTTCAGACTTGACG 58.636 43.478 0.00 0.00 31.71 4.35
1852 2185 4.098044 AGAACTCAACTTCAGACTTGACGA 59.902 41.667 0.00 0.00 31.71 4.20
1853 2186 3.707793 ACTCAACTTCAGACTTGACGAC 58.292 45.455 0.00 0.00 31.71 4.34
1854 2187 3.053455 CTCAACTTCAGACTTGACGACC 58.947 50.000 0.00 0.00 31.71 4.79
1855 2188 1.787155 CAACTTCAGACTTGACGACCG 59.213 52.381 0.00 0.00 31.71 4.79
1856 2189 1.030457 ACTTCAGACTTGACGACCGT 58.970 50.000 0.00 0.00 31.71 4.83
1857 2190 1.269102 ACTTCAGACTTGACGACCGTG 60.269 52.381 0.00 0.00 31.71 4.94
1858 2191 0.031585 TTCAGACTTGACGACCGTGG 59.968 55.000 0.00 0.00 31.71 4.94
1859 2192 2.022129 CAGACTTGACGACCGTGGC 61.022 63.158 0.00 0.00 0.00 5.01
1860 2193 2.201022 AGACTTGACGACCGTGGCT 61.201 57.895 0.00 0.00 0.00 4.75
1861 2194 2.022129 GACTTGACGACCGTGGCTG 61.022 63.158 0.00 0.00 0.00 4.85
1862 2195 3.414700 CTTGACGACCGTGGCTGC 61.415 66.667 0.00 0.00 0.00 5.25
1863 2196 4.980805 TTGACGACCGTGGCTGCC 62.981 66.667 12.87 12.87 0.00 4.85
1897 2230 4.728409 CAAGCCTGCAGACCATGA 57.272 55.556 17.39 0.00 0.00 3.07
1898 2231 3.186345 CAAGCCTGCAGACCATGAT 57.814 52.632 17.39 0.00 0.00 2.45
1899 2232 0.738975 CAAGCCTGCAGACCATGATG 59.261 55.000 17.39 0.00 0.00 3.07
1900 2233 1.035932 AAGCCTGCAGACCATGATGC 61.036 55.000 17.39 7.29 42.86 3.91
1901 2234 2.487532 GCCTGCAGACCATGATGCC 61.488 63.158 17.39 0.00 41.85 4.40
1902 2235 2.184830 CCTGCAGACCATGATGCCG 61.185 63.158 17.39 8.01 41.85 5.69
1903 2236 2.825387 TGCAGACCATGATGCCGC 60.825 61.111 12.91 2.11 41.85 6.53
1904 2237 3.589881 GCAGACCATGATGCCGCC 61.590 66.667 0.00 0.00 36.41 6.13
1905 2238 3.274586 CAGACCATGATGCCGCCG 61.275 66.667 0.00 0.00 0.00 6.46
1906 2239 3.469970 AGACCATGATGCCGCCGA 61.470 61.111 0.00 0.00 0.00 5.54
1907 2240 3.272334 GACCATGATGCCGCCGAC 61.272 66.667 0.00 0.00 0.00 4.79
1919 2252 3.849953 GCCGACGGCGACATTGAC 61.850 66.667 25.24 0.00 39.62 3.18
1920 2253 2.126071 CCGACGGCGACATTGACT 60.126 61.111 15.16 0.00 40.82 3.41
1921 2254 2.158959 CCGACGGCGACATTGACTC 61.159 63.158 15.16 0.00 40.82 3.36
1922 2255 1.154016 CGACGGCGACATTGACTCT 60.154 57.895 16.62 0.00 40.82 3.24
1923 2256 0.732880 CGACGGCGACATTGACTCTT 60.733 55.000 16.62 0.00 40.82 2.85
1924 2257 1.429463 GACGGCGACATTGACTCTTT 58.571 50.000 16.62 0.00 0.00 2.52
1925 2258 1.126846 GACGGCGACATTGACTCTTTG 59.873 52.381 16.62 0.00 0.00 2.77
1926 2259 0.179215 CGGCGACATTGACTCTTTGC 60.179 55.000 0.00 0.00 0.00 3.68
1927 2260 0.169009 GGCGACATTGACTCTTTGCC 59.831 55.000 0.00 0.00 0.00 4.52
1928 2261 0.874390 GCGACATTGACTCTTTGCCA 59.126 50.000 0.00 0.00 0.00 4.92
1929 2262 1.266718 GCGACATTGACTCTTTGCCAA 59.733 47.619 0.00 0.00 0.00 4.52
1930 2263 2.287547 GCGACATTGACTCTTTGCCAAA 60.288 45.455 0.00 0.00 0.00 3.28
1931 2264 3.795150 GCGACATTGACTCTTTGCCAAAA 60.795 43.478 0.00 0.00 0.00 2.44
1932 2265 4.358851 CGACATTGACTCTTTGCCAAAAA 58.641 39.130 0.00 0.00 0.00 1.94
1933 2266 4.984161 CGACATTGACTCTTTGCCAAAAAT 59.016 37.500 0.00 0.00 0.00 1.82
1934 2267 5.117592 CGACATTGACTCTTTGCCAAAAATC 59.882 40.000 0.00 0.00 0.00 2.17
1935 2268 5.916318 ACATTGACTCTTTGCCAAAAATCA 58.084 33.333 0.00 0.00 0.00 2.57
1936 2269 5.754890 ACATTGACTCTTTGCCAAAAATCAC 59.245 36.000 0.00 0.00 0.00 3.06
1937 2270 4.320608 TGACTCTTTGCCAAAAATCACC 57.679 40.909 0.00 0.00 0.00 4.02
1938 2271 3.069443 TGACTCTTTGCCAAAAATCACCC 59.931 43.478 0.00 0.00 0.00 4.61
1939 2272 2.035832 ACTCTTTGCCAAAAATCACCCG 59.964 45.455 0.00 0.00 0.00 5.28
1940 2273 1.147473 CTTTGCCAAAAATCACCCGC 58.853 50.000 0.00 0.00 0.00 6.13
1941 2274 0.598680 TTTGCCAAAAATCACCCGCG 60.599 50.000 0.00 0.00 0.00 6.46
1942 2275 1.456196 TTGCCAAAAATCACCCGCGA 61.456 50.000 8.23 0.00 0.00 5.87
1943 2276 1.287503 GCCAAAAATCACCCGCGAA 59.712 52.632 8.23 0.00 0.00 4.70
1944 2277 1.006825 GCCAAAAATCACCCGCGAAC 61.007 55.000 8.23 0.00 0.00 3.95
1945 2278 0.727793 CCAAAAATCACCCGCGAACG 60.728 55.000 8.23 0.00 39.67 3.95
1956 2289 3.479269 GCGAACGGGCAGACGAAG 61.479 66.667 11.58 0.00 37.61 3.79
1957 2290 2.257371 CGAACGGGCAGACGAAGA 59.743 61.111 0.00 0.00 37.61 2.87
1958 2291 1.801913 CGAACGGGCAGACGAAGAG 60.802 63.158 0.00 0.00 37.61 2.85
1959 2292 2.048127 AACGGGCAGACGAAGAGC 60.048 61.111 0.00 0.00 37.61 4.09
1960 2293 2.765250 GAACGGGCAGACGAAGAGCA 62.765 60.000 0.00 0.00 37.61 4.26
1961 2294 2.172483 AACGGGCAGACGAAGAGCAT 62.172 55.000 0.00 0.00 37.61 3.79
1962 2295 2.169789 CGGGCAGACGAAGAGCATG 61.170 63.158 0.00 0.00 35.47 4.06
1963 2296 1.078848 GGGCAGACGAAGAGCATGT 60.079 57.895 0.00 0.00 0.00 3.21
1964 2297 1.364626 GGGCAGACGAAGAGCATGTG 61.365 60.000 0.00 0.00 0.00 3.21
1965 2298 0.390340 GGCAGACGAAGAGCATGTGA 60.390 55.000 0.00 0.00 0.00 3.58
1966 2299 1.649664 GCAGACGAAGAGCATGTGAT 58.350 50.000 0.00 0.00 0.00 3.06
1967 2300 1.592081 GCAGACGAAGAGCATGTGATC 59.408 52.381 0.00 0.00 0.00 2.92
1968 2301 1.851053 CAGACGAAGAGCATGTGATCG 59.149 52.381 9.63 9.63 39.30 3.69
1969 2302 1.202348 AGACGAAGAGCATGTGATCGG 60.202 52.381 13.84 0.00 37.81 4.18
1970 2303 0.807667 ACGAAGAGCATGTGATCGGC 60.808 55.000 13.84 0.00 37.81 5.54
1971 2304 1.815212 CGAAGAGCATGTGATCGGCG 61.815 60.000 0.00 0.00 35.26 6.46
1972 2305 1.493950 GAAGAGCATGTGATCGGCGG 61.494 60.000 7.21 0.00 35.26 6.13
1973 2306 2.202932 GAGCATGTGATCGGCGGT 60.203 61.111 7.21 0.00 0.00 5.68
1974 2307 1.815421 GAGCATGTGATCGGCGGTT 60.815 57.895 7.21 0.00 0.00 4.44
1975 2308 1.369091 GAGCATGTGATCGGCGGTTT 61.369 55.000 7.21 0.00 0.00 3.27
1976 2309 1.062525 GCATGTGATCGGCGGTTTC 59.937 57.895 7.21 2.57 0.00 2.78
1977 2310 1.721487 CATGTGATCGGCGGTTTCC 59.279 57.895 7.21 0.00 0.00 3.13
1978 2311 1.024046 CATGTGATCGGCGGTTTCCA 61.024 55.000 7.21 0.00 0.00 3.53
1979 2312 0.744414 ATGTGATCGGCGGTTTCCAG 60.744 55.000 7.21 0.00 0.00 3.86
1980 2313 1.079405 GTGATCGGCGGTTTCCAGA 60.079 57.895 7.21 0.00 0.00 3.86
1981 2314 1.084370 GTGATCGGCGGTTTCCAGAG 61.084 60.000 7.21 0.00 0.00 3.35
1982 2315 1.218316 GATCGGCGGTTTCCAGAGT 59.782 57.895 7.21 0.00 0.00 3.24
1983 2316 0.391263 GATCGGCGGTTTCCAGAGTT 60.391 55.000 7.21 0.00 0.00 3.01
1984 2317 0.673644 ATCGGCGGTTTCCAGAGTTG 60.674 55.000 7.21 0.00 0.00 3.16
1985 2318 2.954611 GGCGGTTTCCAGAGTTGC 59.045 61.111 0.00 0.00 0.00 4.17
1986 2319 1.896660 GGCGGTTTCCAGAGTTGCA 60.897 57.895 0.00 0.00 0.00 4.08
1987 2320 1.576421 GCGGTTTCCAGAGTTGCAG 59.424 57.895 0.00 0.00 0.00 4.41
1988 2321 0.884704 GCGGTTTCCAGAGTTGCAGA 60.885 55.000 0.00 0.00 0.00 4.26
1989 2322 1.151668 CGGTTTCCAGAGTTGCAGAG 58.848 55.000 0.00 0.00 0.00 3.35
1990 2323 0.877743 GGTTTCCAGAGTTGCAGAGC 59.122 55.000 0.00 0.00 0.00 4.09
1991 2324 1.597742 GTTTCCAGAGTTGCAGAGCA 58.402 50.000 0.00 0.00 36.47 4.26
1992 2325 1.534595 GTTTCCAGAGTTGCAGAGCAG 59.465 52.381 0.00 0.00 40.61 4.24
1993 2326 1.051008 TTCCAGAGTTGCAGAGCAGA 58.949 50.000 0.00 0.00 40.61 4.26
1994 2327 0.607112 TCCAGAGTTGCAGAGCAGAG 59.393 55.000 0.00 0.00 40.61 3.35
1995 2328 1.020333 CCAGAGTTGCAGAGCAGAGC 61.020 60.000 0.00 0.00 40.61 4.09
1996 2329 1.079956 AGAGTTGCAGAGCAGAGCG 60.080 57.895 0.00 0.00 40.61 5.03
1997 2330 2.047465 AGTTGCAGAGCAGAGCGG 60.047 61.111 0.00 0.00 40.61 5.52
1998 2331 3.123620 GTTGCAGAGCAGAGCGGG 61.124 66.667 0.00 0.00 40.61 6.13
2002 2335 3.123620 CAGAGCAGAGCGGGCAAC 61.124 66.667 0.00 0.00 0.00 4.17
2015 2348 3.512516 GCAACCGGCATCCTCAGC 61.513 66.667 0.00 0.00 43.97 4.26
2016 2349 3.197790 CAACCGGCATCCTCAGCG 61.198 66.667 0.00 0.00 0.00 5.18
2017 2350 4.473520 AACCGGCATCCTCAGCGG 62.474 66.667 0.00 0.00 33.79 5.52
2033 2366 4.094684 GGAGACGATGCACTTCCG 57.905 61.111 0.00 0.00 0.00 4.30
2034 2367 1.511305 GGAGACGATGCACTTCCGA 59.489 57.895 0.00 0.00 0.00 4.55
2035 2368 0.108804 GGAGACGATGCACTTCCGAA 60.109 55.000 0.00 0.00 0.00 4.30
2036 2369 1.272781 GAGACGATGCACTTCCGAAG 58.727 55.000 6.59 6.59 0.00 3.79
2037 2370 0.737715 AGACGATGCACTTCCGAAGC 60.738 55.000 8.11 0.00 0.00 3.86
2038 2371 1.005037 ACGATGCACTTCCGAAGCA 60.005 52.632 8.11 2.84 43.14 3.91
2039 2372 1.016130 ACGATGCACTTCCGAAGCAG 61.016 55.000 8.11 2.71 42.14 4.24
2040 2373 0.737367 CGATGCACTTCCGAAGCAGA 60.737 55.000 8.11 0.00 42.14 4.26
2041 2374 1.442769 GATGCACTTCCGAAGCAGAA 58.557 50.000 8.11 0.00 42.14 3.02
2042 2375 1.129437 GATGCACTTCCGAAGCAGAAC 59.871 52.381 8.11 0.00 42.14 3.01
2043 2376 1.221466 TGCACTTCCGAAGCAGAACG 61.221 55.000 8.11 0.00 33.75 3.95
2044 2377 1.493311 CACTTCCGAAGCAGAACGC 59.507 57.895 8.11 0.00 42.91 4.84
2045 2378 1.668151 ACTTCCGAAGCAGAACGCC 60.668 57.895 8.11 0.00 44.04 5.68
2046 2379 1.374758 CTTCCGAAGCAGAACGCCT 60.375 57.895 0.00 0.00 44.04 5.52
2047 2380 1.355066 CTTCCGAAGCAGAACGCCTC 61.355 60.000 0.00 0.00 44.04 4.70
2049 2382 3.843240 CGAAGCAGAACGCCTCGC 61.843 66.667 0.00 0.00 46.71 5.03
2060 2393 2.954868 GCCTCGCGTGTGGATACG 60.955 66.667 20.68 0.00 46.28 3.06
2078 2411 5.008712 GGATACGCCTCCATTTCCTTTTTAG 59.991 44.000 0.00 0.00 35.24 1.85
2088 2421 5.336372 CCATTTCCTTTTTAGTTCGGATGCA 60.336 40.000 0.00 0.00 0.00 3.96
2093 2426 4.346129 CTTTTTAGTTCGGATGCAGATGC 58.654 43.478 0.00 0.00 42.50 3.91
2148 2481 8.964476 ACGAGTATCTGATATTTTGGATTGTT 57.036 30.769 0.00 0.00 0.00 2.83
2150 2483 9.045223 CGAGTATCTGATATTTTGGATTGTTCA 57.955 33.333 0.00 0.00 0.00 3.18
2156 2489 8.469200 TCTGATATTTTGGATTGTTCAATCACC 58.531 33.333 21.74 10.67 0.00 4.02
2157 2490 8.131847 TGATATTTTGGATTGTTCAATCACCA 57.868 30.769 21.74 12.67 0.00 4.17
2161 2494 4.191033 TGGATTGTTCAATCACCAATGC 57.809 40.909 21.74 7.82 37.41 3.56
2162 2495 3.833650 TGGATTGTTCAATCACCAATGCT 59.166 39.130 21.74 0.00 37.67 3.79
2186 2520 5.430886 ACTTTTCACACTTAGGTTTACCGT 58.569 37.500 0.00 0.00 42.08 4.83
2187 2521 5.882000 ACTTTTCACACTTAGGTTTACCGTT 59.118 36.000 0.00 0.00 42.08 4.44
2193 2527 5.756833 CACACTTAGGTTTACCGTTCTTCTT 59.243 40.000 0.00 0.00 42.08 2.52
2200 2534 7.295322 AGGTTTACCGTTCTTCTTACTAAGT 57.705 36.000 0.00 0.00 42.08 2.24
2202 2536 7.869937 AGGTTTACCGTTCTTCTTACTAAGTTC 59.130 37.037 0.00 0.00 42.08 3.01
2216 2550 9.551734 TCTTACTAAGTTCTTTTAAGTGTTCCC 57.448 33.333 0.00 0.00 0.00 3.97
2217 2551 9.333724 CTTACTAAGTTCTTTTAAGTGTTCCCA 57.666 33.333 0.00 0.00 0.00 4.37
2218 2552 9.856162 TTACTAAGTTCTTTTAAGTGTTCCCAT 57.144 29.630 0.00 0.00 0.00 4.00
2219 2553 8.762481 ACTAAGTTCTTTTAAGTGTTCCCATT 57.238 30.769 0.00 0.00 0.00 3.16
2220 2554 9.856162 ACTAAGTTCTTTTAAGTGTTCCCATTA 57.144 29.630 0.00 0.00 0.00 1.90
2223 2557 8.990163 AGTTCTTTTAAGTGTTCCCATTAAGA 57.010 30.769 0.00 0.00 0.00 2.10
2224 2558 9.416284 AGTTCTTTTAAGTGTTCCCATTAAGAA 57.584 29.630 0.00 0.00 0.00 2.52
2225 2559 9.678941 GTTCTTTTAAGTGTTCCCATTAAGAAG 57.321 33.333 0.00 0.00 31.89 2.85
2226 2560 9.635404 TTCTTTTAAGTGTTCCCATTAAGAAGA 57.365 29.630 0.00 0.00 0.00 2.87
2233 2567 8.152023 AGTGTTCCCATTAAGAAGATTAGAGT 57.848 34.615 0.00 0.00 0.00 3.24
2234 2568 8.043710 AGTGTTCCCATTAAGAAGATTAGAGTG 58.956 37.037 0.00 0.00 0.00 3.51
2235 2569 7.824779 GTGTTCCCATTAAGAAGATTAGAGTGT 59.175 37.037 0.00 0.00 0.00 3.55
2237 2571 7.979786 TCCCATTAAGAAGATTAGAGTGTCT 57.020 36.000 0.00 0.00 0.00 3.41
2238 2572 7.786030 TCCCATTAAGAAGATTAGAGTGTCTG 58.214 38.462 0.00 0.00 0.00 3.51
2239 2573 7.619698 TCCCATTAAGAAGATTAGAGTGTCTGA 59.380 37.037 0.00 0.00 0.00 3.27
2241 2575 9.829507 CCATTAAGAAGATTAGAGTGTCTGAAT 57.170 33.333 0.00 0.00 0.00 2.57
2265 4144 0.110486 TTTTGAGGGGTGAGTGCCTC 59.890 55.000 0.00 0.00 0.00 4.70
2270 4149 0.912486 AGGGGTGAGTGCCTCATTAC 59.088 55.000 7.95 3.24 42.73 1.89
2278 4157 5.479306 GTGAGTGCCTCATTACTTAGTCAA 58.521 41.667 7.95 0.00 42.73 3.18
2281 4160 6.014584 TGAGTGCCTCATTACTTAGTCAAAGA 60.015 38.462 1.25 0.00 35.39 2.52
2327 4206 9.660544 ACAGGCCCATAGAATATTTTATTTTCT 57.339 29.630 0.00 0.00 35.30 2.52
2396 4285 0.034186 CAAGGCAGCACTATTCCCCA 60.034 55.000 0.00 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.880696 ACAAGGATGCTTTCTATCTTGAGC 59.119 41.667 0.00 0.00 35.74 4.26
31 32 0.538118 GTATGGACCAACCCGTAGCA 59.462 55.000 0.00 0.00 38.00 3.49
32 33 0.538118 TGTATGGACCAACCCGTAGC 59.462 55.000 0.00 0.00 38.00 3.58
33 34 1.829222 AGTGTATGGACCAACCCGTAG 59.171 52.381 0.00 0.00 38.00 3.51
34 35 1.551430 CAGTGTATGGACCAACCCGTA 59.449 52.381 0.00 0.00 38.00 4.02
35 36 0.323629 CAGTGTATGGACCAACCCGT 59.676 55.000 0.00 0.00 38.00 5.28
36 37 0.323629 ACAGTGTATGGACCAACCCG 59.676 55.000 0.00 0.00 38.00 5.28
37 38 1.613255 CCACAGTGTATGGACCAACCC 60.613 57.143 0.00 0.00 39.87 4.11
102 103 0.377905 GTCTACTTCCTCTCGGCGAC 59.622 60.000 4.99 0.00 0.00 5.19
107 108 4.457834 AATTGGTGTCTACTTCCTCTCG 57.542 45.455 0.00 0.00 0.00 4.04
142 143 0.108615 GGATGACTCTGTGGTCACGG 60.109 60.000 3.66 3.66 46.93 4.94
144 145 0.976641 TGGGATGACTCTGTGGTCAC 59.023 55.000 7.95 0.00 46.93 3.67
150 151 1.415659 GCTGCTATGGGATGACTCTGT 59.584 52.381 0.00 0.00 0.00 3.41
222 223 0.855349 GCGTATCTTGATGGACAGCG 59.145 55.000 0.00 0.00 0.00 5.18
231 232 2.223735 CCTTCTTAGCGGCGTATCTTGA 60.224 50.000 9.37 0.00 0.00 3.02
233 234 1.068741 CCCTTCTTAGCGGCGTATCTT 59.931 52.381 9.37 0.00 0.00 2.40
290 600 3.239449 TGCTTCTTCCTCCTGTCAACTA 58.761 45.455 0.00 0.00 0.00 2.24
300 610 4.381292 CCATGAAACCATTGCTTCTTCCTC 60.381 45.833 0.00 0.00 0.00 3.71
335 645 1.440145 GGCTAAACTGCCCAGATCGC 61.440 60.000 1.69 0.00 46.82 4.58
352 662 0.748005 ATGCTGGAATGTACGTGGGC 60.748 55.000 0.00 0.00 0.00 5.36
358 668 7.615403 TCTATCAATCCTATGCTGGAATGTAC 58.385 38.462 8.22 0.00 39.85 2.90
368 678 6.646653 TGACGTCAAATCTATCAATCCTATGC 59.353 38.462 17.62 0.00 0.00 3.14
402 712 1.488812 CCCATCCAAGATCCGGTGTTA 59.511 52.381 0.00 0.00 0.00 2.41
483 798 5.989777 AGAATATTACGTGGCCTGTTGTATC 59.010 40.000 3.32 0.00 0.00 2.24
551 866 6.750963 GGTACGCGCTATCTTATTAAGCTAAT 59.249 38.462 5.73 0.00 34.03 1.73
643 967 8.046107 AGACGGAGGAAGTAGTATATGGTATAC 58.954 40.741 0.00 0.00 0.00 1.47
655 979 7.603024 ACAAGAATTTTAAGACGGAGGAAGTAG 59.397 37.037 0.00 0.00 0.00 2.57
656 980 7.447594 ACAAGAATTTTAAGACGGAGGAAGTA 58.552 34.615 0.00 0.00 0.00 2.24
657 981 6.296803 ACAAGAATTTTAAGACGGAGGAAGT 58.703 36.000 0.00 0.00 0.00 3.01
658 982 6.651225 AGACAAGAATTTTAAGACGGAGGAAG 59.349 38.462 0.00 0.00 0.00 3.46
659 983 6.531021 AGACAAGAATTTTAAGACGGAGGAA 58.469 36.000 0.00 0.00 0.00 3.36
660 984 6.110411 AGACAAGAATTTTAAGACGGAGGA 57.890 37.500 0.00 0.00 0.00 3.71
661 985 6.803154 AAGACAAGAATTTTAAGACGGAGG 57.197 37.500 0.00 0.00 0.00 4.30
662 986 8.758633 TCTAAGACAAGAATTTTAAGACGGAG 57.241 34.615 0.00 0.00 0.00 4.63
663 987 9.720769 AATCTAAGACAAGAATTTTAAGACGGA 57.279 29.630 0.00 0.00 0.00 4.69
748 1072 9.463443 CCGTCTCAAAATTCTTGTCTTAAATTT 57.537 29.630 0.00 0.00 34.86 1.82
749 1073 8.846211 TCCGTCTCAAAATTCTTGTCTTAAATT 58.154 29.630 0.00 0.00 0.00 1.82
750 1074 8.391075 TCCGTCTCAAAATTCTTGTCTTAAAT 57.609 30.769 0.00 0.00 0.00 1.40
751 1075 7.041372 CCTCCGTCTCAAAATTCTTGTCTTAAA 60.041 37.037 0.00 0.00 0.00 1.52
752 1076 6.426937 CCTCCGTCTCAAAATTCTTGTCTTAA 59.573 38.462 0.00 0.00 0.00 1.85
753 1077 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
754 1078 4.757149 CCTCCGTCTCAAAATTCTTGTCTT 59.243 41.667 0.00 0.00 0.00 3.01
755 1079 4.319177 CCTCCGTCTCAAAATTCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
756 1080 3.437049 CCCTCCGTCTCAAAATTCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
757 1081 3.072476 TCCCTCCGTCTCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
758 1082 3.674997 TCCCTCCGTCTCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
759 1083 3.328050 ACTCCCTCCGTCTCAAAATTCTT 59.672 43.478 0.00 0.00 0.00 2.52
760 1084 2.907042 ACTCCCTCCGTCTCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
761 1085 3.336138 ACTCCCTCCGTCTCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
762 1086 3.581332 TGTACTCCCTCCGTCTCAAAATT 59.419 43.478 0.00 0.00 0.00 1.82
763 1087 3.170717 TGTACTCCCTCCGTCTCAAAAT 58.829 45.455 0.00 0.00 0.00 1.82
764 1088 2.561419 CTGTACTCCCTCCGTCTCAAAA 59.439 50.000 0.00 0.00 0.00 2.44
765 1089 2.168496 CTGTACTCCCTCCGTCTCAAA 58.832 52.381 0.00 0.00 0.00 2.69
766 1090 1.075050 ACTGTACTCCCTCCGTCTCAA 59.925 52.381 0.00 0.00 0.00 3.02
767 1091 0.697079 ACTGTACTCCCTCCGTCTCA 59.303 55.000 0.00 0.00 0.00 3.27
768 1092 2.287769 GTACTGTACTCCCTCCGTCTC 58.712 57.143 10.64 0.00 0.00 3.36
769 1093 1.632409 TGTACTGTACTCCCTCCGTCT 59.368 52.381 17.98 0.00 0.00 4.18
770 1094 2.119801 TGTACTGTACTCCCTCCGTC 57.880 55.000 17.98 0.00 0.00 4.79
771 1095 2.822707 ATGTACTGTACTCCCTCCGT 57.177 50.000 17.98 0.00 0.00 4.69
772 1096 2.553172 GCTATGTACTGTACTCCCTCCG 59.447 54.545 17.98 2.65 0.00 4.63
773 1097 2.553172 CGCTATGTACTGTACTCCCTCC 59.447 54.545 17.98 2.69 0.00 4.30
774 1098 3.474600 TCGCTATGTACTGTACTCCCTC 58.525 50.000 17.98 4.25 0.00 4.30
775 1099 3.572632 TCGCTATGTACTGTACTCCCT 57.427 47.619 17.98 4.36 0.00 4.20
776 1100 4.073549 AGATCGCTATGTACTGTACTCCC 58.926 47.826 17.98 4.49 0.00 4.30
777 1101 4.083217 CCAGATCGCTATGTACTGTACTCC 60.083 50.000 17.98 4.19 0.00 3.85
778 1102 4.515944 ACCAGATCGCTATGTACTGTACTC 59.484 45.833 17.98 6.32 0.00 2.59
779 1103 4.462133 ACCAGATCGCTATGTACTGTACT 58.538 43.478 17.98 7.21 0.00 2.73
780 1104 4.275196 TGACCAGATCGCTATGTACTGTAC 59.725 45.833 10.98 10.98 0.00 2.90
781 1105 4.457466 TGACCAGATCGCTATGTACTGTA 58.543 43.478 0.00 0.00 0.00 2.74
782 1106 3.288092 TGACCAGATCGCTATGTACTGT 58.712 45.455 0.00 0.00 0.00 3.55
783 1107 3.990318 TGACCAGATCGCTATGTACTG 57.010 47.619 0.00 0.00 0.00 2.74
784 1108 4.262207 CCATTGACCAGATCGCTATGTACT 60.262 45.833 0.00 0.00 0.00 2.73
785 1109 3.990469 CCATTGACCAGATCGCTATGTAC 59.010 47.826 0.00 0.00 0.00 2.90
791 1115 0.904649 TCACCATTGACCAGATCGCT 59.095 50.000 0.00 0.00 0.00 4.93
828 1152 5.333111 CGTTGACTAGCTGACCAAAGTTAAC 60.333 44.000 8.80 8.80 35.97 2.01
858 1182 0.804364 TTCAAGATGTGCCGTGCATC 59.196 50.000 1.90 2.94 41.91 3.91
863 1187 2.226437 GTCAACATTCAAGATGTGCCGT 59.774 45.455 0.00 0.00 31.80 5.68
867 1191 8.583810 AATTTTCAGTCAACATTCAAGATGTG 57.416 30.769 0.00 0.00 31.80 3.21
907 1231 3.371102 ATCAACCGATGATTCGACGAT 57.629 42.857 0.00 0.00 46.85 3.73
934 1258 6.414408 GCTATGCGATGCTATTGAAGTATT 57.586 37.500 0.00 0.00 29.59 1.89
1041 1371 6.886459 ACTATTTTCTTGTGTGATATGGTGCT 59.114 34.615 0.00 0.00 0.00 4.40
1045 1375 9.046296 GGAGTACTATTTTCTTGTGTGATATGG 57.954 37.037 0.00 0.00 0.00 2.74
1048 1378 9.599866 CATGGAGTACTATTTTCTTGTGTGATA 57.400 33.333 0.00 0.00 0.00 2.15
1091 1422 1.750018 CCCACCATGATCGCAGCAA 60.750 57.895 0.00 0.00 0.00 3.91
1318 1649 4.127726 GACGGTGTCGACGAAGAC 57.872 61.111 11.62 2.95 41.30 3.01
1338 1669 2.363795 CCTGCGTAGGGGGTCTCA 60.364 66.667 12.40 0.00 40.63 3.27
1353 1684 4.134933 AGGTATTTAGCCTAGCTAGCCT 57.865 45.455 15.74 12.56 42.34 4.58
1394 1725 5.236478 GTCCATGACCCGTGACATTAATAAG 59.764 44.000 0.00 0.00 0.00 1.73
1429 1760 2.371841 TGCATGGATATGGGGAGTACAC 59.628 50.000 0.00 0.00 34.79 2.90
1431 1762 3.614092 CATGCATGGATATGGGGAGTAC 58.386 50.000 19.40 0.00 34.79 2.73
1497 1828 3.136443 CAGGGGCATATAGTTTGTGGAGA 59.864 47.826 0.00 0.00 0.00 3.71
1498 1829 3.480470 CAGGGGCATATAGTTTGTGGAG 58.520 50.000 0.00 0.00 0.00 3.86
1502 1833 4.415512 ACATACCAGGGGCATATAGTTTGT 59.584 41.667 0.00 0.00 0.00 2.83
1507 1838 4.640771 AACACATACCAGGGGCATATAG 57.359 45.455 0.00 0.00 0.00 1.31
1509 1840 4.852118 AGATAACACATACCAGGGGCATAT 59.148 41.667 0.00 0.00 0.00 1.78
1555 1886 8.848474 AGGGATATAACCGTAAAATTCATCTG 57.152 34.615 0.00 0.00 0.00 2.90
1571 1902 7.717875 GCAACTGTGGTTATACAAGGGATATAA 59.282 37.037 0.00 0.00 33.88 0.98
1587 1918 1.523758 GATTCCGAAGCAACTGTGGT 58.476 50.000 0.00 0.00 36.94 4.16
1592 1923 2.496899 ATGTGGATTCCGAAGCAACT 57.503 45.000 5.53 0.00 0.00 3.16
1593 1924 3.689649 ACTAATGTGGATTCCGAAGCAAC 59.310 43.478 0.00 0.00 0.00 4.17
1666 1999 2.424234 CCCTCCCCAGTTGAAACTTCAA 60.424 50.000 0.69 0.69 44.31 2.69
1667 2000 1.144913 CCCTCCCCAGTTGAAACTTCA 59.855 52.381 0.00 0.00 37.08 3.02
1668 2001 1.547901 CCCCTCCCCAGTTGAAACTTC 60.548 57.143 0.00 0.00 37.08 3.01
1669 2002 0.482887 CCCCTCCCCAGTTGAAACTT 59.517 55.000 0.00 0.00 37.08 2.66
1670 2003 1.435346 CCCCCTCCCCAGTTGAAACT 61.435 60.000 0.00 0.00 40.60 2.66
1671 2004 1.076727 CCCCCTCCCCAGTTGAAAC 59.923 63.158 0.00 0.00 0.00 2.78
1672 2005 3.600919 CCCCCTCCCCAGTTGAAA 58.399 61.111 0.00 0.00 0.00 2.69
1697 2030 1.591768 TATTCAGGTGGGGGAACTCC 58.408 55.000 0.00 0.00 0.00 3.85
1698 2031 5.073144 TCAATATATTCAGGTGGGGGAACTC 59.927 44.000 0.00 0.00 0.00 3.01
1699 2032 4.981647 TCAATATATTCAGGTGGGGGAACT 59.018 41.667 0.00 0.00 0.00 3.01
1700 2033 5.319043 TCAATATATTCAGGTGGGGGAAC 57.681 43.478 0.00 0.00 0.00 3.62
1701 2034 5.614831 TGATCAATATATTCAGGTGGGGGAA 59.385 40.000 0.00 0.00 0.00 3.97
1702 2035 5.169438 TGATCAATATATTCAGGTGGGGGA 58.831 41.667 0.00 0.00 0.00 4.81
1703 2036 5.519183 TGATCAATATATTCAGGTGGGGG 57.481 43.478 0.00 0.00 0.00 5.40
1704 2037 7.006509 ACTTTGATCAATATATTCAGGTGGGG 58.993 38.462 9.40 0.00 0.00 4.96
1705 2038 7.040201 CCACTTTGATCAATATATTCAGGTGGG 60.040 40.741 9.40 2.36 39.13 4.61
1706 2039 7.040201 CCCACTTTGATCAATATATTCAGGTGG 60.040 40.741 9.40 19.85 40.59 4.61
1707 2040 7.522725 GCCCACTTTGATCAATATATTCAGGTG 60.523 40.741 9.40 2.16 0.00 4.00
1708 2041 6.491403 GCCCACTTTGATCAATATATTCAGGT 59.509 38.462 9.40 0.00 0.00 4.00
1709 2042 6.718454 AGCCCACTTTGATCAATATATTCAGG 59.282 38.462 9.40 4.09 0.00 3.86
1710 2043 7.756395 AGCCCACTTTGATCAATATATTCAG 57.244 36.000 9.40 4.26 0.00 3.02
1711 2044 9.639563 TTTAGCCCACTTTGATCAATATATTCA 57.360 29.630 9.40 0.00 0.00 2.57
1715 2048 9.077885 GGATTTTAGCCCACTTTGATCAATATA 57.922 33.333 9.40 0.00 0.00 0.86
1716 2049 7.015584 GGGATTTTAGCCCACTTTGATCAATAT 59.984 37.037 9.40 0.00 45.31 1.28
1717 2050 6.323739 GGGATTTTAGCCCACTTTGATCAATA 59.676 38.462 9.40 0.00 45.31 1.90
1718 2051 5.129320 GGGATTTTAGCCCACTTTGATCAAT 59.871 40.000 9.40 0.00 45.31 2.57
1719 2052 4.466015 GGGATTTTAGCCCACTTTGATCAA 59.534 41.667 3.38 3.38 45.31 2.57
1720 2053 4.023291 GGGATTTTAGCCCACTTTGATCA 58.977 43.478 0.00 0.00 45.31 2.92
1721 2054 4.655762 GGGATTTTAGCCCACTTTGATC 57.344 45.455 0.00 0.00 45.31 2.92
1730 2063 1.239347 GCGATCTGGGATTTTAGCCC 58.761 55.000 0.00 0.00 46.22 5.19
1731 2064 1.604278 GTGCGATCTGGGATTTTAGCC 59.396 52.381 0.00 0.00 0.00 3.93
1732 2065 2.032178 GTGTGCGATCTGGGATTTTAGC 59.968 50.000 0.00 0.00 0.00 3.09
1733 2066 2.285220 CGTGTGCGATCTGGGATTTTAG 59.715 50.000 0.00 0.00 41.33 1.85
1734 2067 2.093921 TCGTGTGCGATCTGGGATTTTA 60.094 45.455 0.00 0.00 42.81 1.52
1735 2068 1.086696 CGTGTGCGATCTGGGATTTT 58.913 50.000 0.00 0.00 41.33 1.82
1736 2069 0.249120 TCGTGTGCGATCTGGGATTT 59.751 50.000 0.00 0.00 42.81 2.17
1737 2070 0.179100 CTCGTGTGCGATCTGGGATT 60.179 55.000 0.00 0.00 46.80 3.01
1738 2071 1.439228 CTCGTGTGCGATCTGGGAT 59.561 57.895 0.00 0.00 46.80 3.85
1739 2072 2.885113 CTCGTGTGCGATCTGGGA 59.115 61.111 0.00 0.00 46.80 4.37
1740 2073 2.887568 GCTCGTGTGCGATCTGGG 60.888 66.667 0.00 0.00 46.80 4.45
1741 2074 1.690283 CTTGCTCGTGTGCGATCTGG 61.690 60.000 0.00 0.00 46.80 3.86
1742 2075 1.010935 ACTTGCTCGTGTGCGATCTG 61.011 55.000 0.00 0.00 46.80 2.90
1743 2076 1.010935 CACTTGCTCGTGTGCGATCT 61.011 55.000 0.00 0.00 46.80 2.75
1744 2077 1.008875 TCACTTGCTCGTGTGCGATC 61.009 55.000 5.98 0.00 46.80 3.69
1745 2078 1.006220 TCACTTGCTCGTGTGCGAT 60.006 52.632 5.98 0.00 46.80 4.58
1746 2079 1.949133 GTCACTTGCTCGTGTGCGA 60.949 57.895 5.98 0.00 45.79 5.10
1747 2080 2.546321 GTCACTTGCTCGTGTGCG 59.454 61.111 5.98 0.00 36.33 5.34
1748 2081 2.546321 CGTCACTTGCTCGTGTGC 59.454 61.111 5.98 0.00 36.33 4.57
1749 2082 2.943345 GCCGTCACTTGCTCGTGTG 61.943 63.158 5.98 0.00 36.33 3.82
1750 2083 2.661866 GCCGTCACTTGCTCGTGT 60.662 61.111 5.98 0.00 36.33 4.49
1751 2084 2.356313 AGCCGTCACTTGCTCGTG 60.356 61.111 0.29 0.29 30.33 4.35
1752 2085 2.356313 CAGCCGTCACTTGCTCGT 60.356 61.111 0.00 0.00 35.12 4.18
1753 2086 1.956170 AACAGCCGTCACTTGCTCG 60.956 57.895 0.00 0.00 35.12 5.03
1754 2087 1.160329 ACAACAGCCGTCACTTGCTC 61.160 55.000 0.00 0.00 35.12 4.26
1755 2088 1.153168 ACAACAGCCGTCACTTGCT 60.153 52.632 0.00 0.00 38.67 3.91
1756 2089 1.160329 AGACAACAGCCGTCACTTGC 61.160 55.000 0.00 0.00 35.77 4.01
1757 2090 0.861837 GAGACAACAGCCGTCACTTG 59.138 55.000 0.00 0.00 35.77 3.16
1758 2091 0.753262 AGAGACAACAGCCGTCACTT 59.247 50.000 0.00 0.00 35.77 3.16
1759 2092 1.617322 TAGAGACAACAGCCGTCACT 58.383 50.000 0.00 0.00 37.88 3.41
1760 2093 2.433868 TTAGAGACAACAGCCGTCAC 57.566 50.000 0.00 0.00 35.77 3.67
1761 2094 3.069016 TCTTTTAGAGACAACAGCCGTCA 59.931 43.478 0.00 0.00 35.77 4.35
1762 2095 3.650139 TCTTTTAGAGACAACAGCCGTC 58.350 45.455 0.00 0.00 0.00 4.79
1763 2096 3.746045 TCTTTTAGAGACAACAGCCGT 57.254 42.857 0.00 0.00 0.00 5.68
1789 2122 4.389576 CTGGAAGCACCGCAACGC 62.390 66.667 0.00 0.00 42.61 4.84
1790 2123 2.664851 TCTGGAAGCACCGCAACG 60.665 61.111 0.00 0.00 42.61 4.10
1791 2124 3.257933 CTCTGGAAGCACCGCAAC 58.742 61.111 0.00 0.00 42.61 4.17
1804 2137 1.449726 TTGTGTTGCTGCCAGCTCTG 61.450 55.000 18.96 0.00 42.97 3.35
1805 2138 1.152902 TTGTGTTGCTGCCAGCTCT 60.153 52.632 18.96 0.00 42.97 4.09
1806 2139 1.008079 GTTGTGTTGCTGCCAGCTC 60.008 57.895 18.96 11.44 42.97 4.09
1807 2140 1.111116 ATGTTGTGTTGCTGCCAGCT 61.111 50.000 18.96 0.00 42.97 4.24
1808 2141 0.942410 CATGTTGTGTTGCTGCCAGC 60.942 55.000 10.45 10.45 42.82 4.85
1809 2142 0.319211 CCATGTTGTGTTGCTGCCAG 60.319 55.000 0.00 0.00 0.00 4.85
1810 2143 0.754587 TCCATGTTGTGTTGCTGCCA 60.755 50.000 0.00 0.00 0.00 4.92
1811 2144 0.038892 CTCCATGTTGTGTTGCTGCC 60.039 55.000 0.00 0.00 0.00 4.85
1812 2145 0.953727 TCTCCATGTTGTGTTGCTGC 59.046 50.000 0.00 0.00 0.00 5.25
1813 2146 2.620115 AGTTCTCCATGTTGTGTTGCTG 59.380 45.455 0.00 0.00 0.00 4.41
1814 2147 2.880890 GAGTTCTCCATGTTGTGTTGCT 59.119 45.455 0.00 0.00 0.00 3.91
1815 2148 2.618241 TGAGTTCTCCATGTTGTGTTGC 59.382 45.455 0.00 0.00 0.00 4.17
1816 2149 4.336433 AGTTGAGTTCTCCATGTTGTGTTG 59.664 41.667 0.00 0.00 0.00 3.33
1817 2150 4.526970 AGTTGAGTTCTCCATGTTGTGTT 58.473 39.130 0.00 0.00 0.00 3.32
1818 2151 4.156455 AGTTGAGTTCTCCATGTTGTGT 57.844 40.909 0.00 0.00 0.00 3.72
1819 2152 4.576053 TGAAGTTGAGTTCTCCATGTTGTG 59.424 41.667 0.00 0.00 0.00 3.33
1820 2153 4.780815 TGAAGTTGAGTTCTCCATGTTGT 58.219 39.130 0.00 0.00 0.00 3.32
1821 2154 5.049818 GTCTGAAGTTGAGTTCTCCATGTTG 60.050 44.000 0.00 0.00 0.00 3.33
1822 2155 5.059833 GTCTGAAGTTGAGTTCTCCATGTT 58.940 41.667 0.00 0.00 0.00 2.71
1823 2156 4.346418 AGTCTGAAGTTGAGTTCTCCATGT 59.654 41.667 0.00 0.00 0.00 3.21
1824 2157 4.892433 AGTCTGAAGTTGAGTTCTCCATG 58.108 43.478 0.77 0.00 0.00 3.66
1825 2158 5.070981 TCAAGTCTGAAGTTGAGTTCTCCAT 59.929 40.000 0.74 0.00 39.40 3.41
1826 2159 4.405680 TCAAGTCTGAAGTTGAGTTCTCCA 59.594 41.667 0.74 0.00 39.40 3.86
1827 2160 4.747605 GTCAAGTCTGAAGTTGAGTTCTCC 59.252 45.833 4.41 0.00 43.74 3.71
1828 2161 4.442733 CGTCAAGTCTGAAGTTGAGTTCTC 59.557 45.833 4.41 0.00 43.74 2.87
1829 2162 4.098044 TCGTCAAGTCTGAAGTTGAGTTCT 59.902 41.667 4.41 0.00 43.74 3.01
1830 2163 4.207429 GTCGTCAAGTCTGAAGTTGAGTTC 59.793 45.833 4.41 0.00 43.74 3.01
1831 2164 4.113354 GTCGTCAAGTCTGAAGTTGAGTT 58.887 43.478 4.41 0.00 43.74 3.01
1832 2165 3.491104 GGTCGTCAAGTCTGAAGTTGAGT 60.491 47.826 4.41 0.00 43.74 3.41
1833 2166 3.053455 GGTCGTCAAGTCTGAAGTTGAG 58.947 50.000 4.41 0.00 43.74 3.02
1834 2167 2.543031 CGGTCGTCAAGTCTGAAGTTGA 60.543 50.000 0.74 0.74 41.50 3.18
1835 2168 1.787155 CGGTCGTCAAGTCTGAAGTTG 59.213 52.381 0.00 0.00 37.19 3.16
1836 2169 1.407979 ACGGTCGTCAAGTCTGAAGTT 59.592 47.619 0.00 0.00 33.29 2.66
1837 2170 1.030457 ACGGTCGTCAAGTCTGAAGT 58.970 50.000 0.00 0.00 33.29 3.01
1838 2171 1.409412 CACGGTCGTCAAGTCTGAAG 58.591 55.000 0.00 0.00 31.88 3.02
1839 2172 0.031585 CCACGGTCGTCAAGTCTGAA 59.968 55.000 0.00 0.00 31.88 3.02
1840 2173 1.658114 CCACGGTCGTCAAGTCTGA 59.342 57.895 0.00 0.00 0.00 3.27
1841 2174 2.022129 GCCACGGTCGTCAAGTCTG 61.022 63.158 0.00 0.00 0.00 3.51
1842 2175 2.201022 AGCCACGGTCGTCAAGTCT 61.201 57.895 0.00 0.00 0.00 3.24
1843 2176 2.022129 CAGCCACGGTCGTCAAGTC 61.022 63.158 0.00 0.00 0.00 3.01
1844 2177 2.029073 CAGCCACGGTCGTCAAGT 59.971 61.111 0.00 0.00 0.00 3.16
1845 2178 3.414700 GCAGCCACGGTCGTCAAG 61.415 66.667 0.00 0.00 0.00 3.02
1846 2179 4.980805 GGCAGCCACGGTCGTCAA 62.981 66.667 6.55 0.00 0.00 3.18
1866 2199 4.362476 CTTGCCGCCCTTGCAACC 62.362 66.667 0.00 0.00 43.36 3.77
1880 2213 0.738975 CATCATGGTCTGCAGGCTTG 59.261 55.000 19.48 15.94 0.00 4.01
1881 2214 1.035932 GCATCATGGTCTGCAGGCTT 61.036 55.000 19.48 3.12 38.28 4.35
1882 2215 1.453379 GCATCATGGTCTGCAGGCT 60.453 57.895 19.48 0.00 38.28 4.58
1883 2216 2.487532 GGCATCATGGTCTGCAGGC 61.488 63.158 15.13 13.00 40.18 4.85
1884 2217 2.184830 CGGCATCATGGTCTGCAGG 61.185 63.158 15.13 0.00 40.18 4.85
1885 2218 2.831366 GCGGCATCATGGTCTGCAG 61.831 63.158 7.63 7.63 40.18 4.41
1886 2219 2.825387 GCGGCATCATGGTCTGCA 60.825 61.111 14.77 0.00 40.18 4.41
1887 2220 3.589881 GGCGGCATCATGGTCTGC 61.590 66.667 3.07 7.13 37.66 4.26
1888 2221 3.274586 CGGCGGCATCATGGTCTG 61.275 66.667 10.53 0.00 0.00 3.51
1889 2222 3.469970 TCGGCGGCATCATGGTCT 61.470 61.111 10.53 0.00 0.00 3.85
1890 2223 3.272334 GTCGGCGGCATCATGGTC 61.272 66.667 6.63 0.00 0.00 4.02
1902 2235 3.849953 GTCAATGTCGCCGTCGGC 61.850 66.667 26.69 26.69 46.75 5.54
1903 2236 2.126071 AGTCAATGTCGCCGTCGG 60.126 61.111 6.99 6.99 36.13 4.79
1904 2237 0.732880 AAGAGTCAATGTCGCCGTCG 60.733 55.000 0.00 0.00 0.00 5.12
1905 2238 1.126846 CAAAGAGTCAATGTCGCCGTC 59.873 52.381 0.00 0.00 0.00 4.79
1906 2239 1.148310 CAAAGAGTCAATGTCGCCGT 58.852 50.000 0.00 0.00 0.00 5.68
1907 2240 0.179215 GCAAAGAGTCAATGTCGCCG 60.179 55.000 0.00 0.00 0.00 6.46
1908 2241 0.169009 GGCAAAGAGTCAATGTCGCC 59.831 55.000 0.00 0.00 0.00 5.54
1909 2242 0.874390 TGGCAAAGAGTCAATGTCGC 59.126 50.000 0.00 0.00 0.00 5.19
1910 2243 3.624326 TTTGGCAAAGAGTCAATGTCG 57.376 42.857 8.93 0.00 42.32 4.35
1911 2244 5.984926 TGATTTTTGGCAAAGAGTCAATGTC 59.015 36.000 13.04 2.34 42.32 3.06
1912 2245 5.754890 GTGATTTTTGGCAAAGAGTCAATGT 59.245 36.000 18.88 0.00 42.32 2.71
1913 2246 5.178067 GGTGATTTTTGGCAAAGAGTCAATG 59.822 40.000 18.88 0.00 42.32 2.82
1914 2247 5.299949 GGTGATTTTTGGCAAAGAGTCAAT 58.700 37.500 18.88 13.48 42.32 2.57
1915 2248 4.442753 GGGTGATTTTTGGCAAAGAGTCAA 60.443 41.667 18.88 9.98 40.78 3.18
1916 2249 3.069443 GGGTGATTTTTGGCAAAGAGTCA 59.931 43.478 13.04 14.50 0.00 3.41
1917 2250 3.653344 GGGTGATTTTTGGCAAAGAGTC 58.347 45.455 13.04 12.31 0.00 3.36
1918 2251 2.035832 CGGGTGATTTTTGGCAAAGAGT 59.964 45.455 13.04 3.29 0.00 3.24
1919 2252 2.676076 CGGGTGATTTTTGGCAAAGAG 58.324 47.619 13.04 0.00 0.00 2.85
1920 2253 1.270041 GCGGGTGATTTTTGGCAAAGA 60.270 47.619 13.04 9.34 0.00 2.52
1921 2254 1.147473 GCGGGTGATTTTTGGCAAAG 58.853 50.000 13.04 0.08 0.00 2.77
1922 2255 0.598680 CGCGGGTGATTTTTGGCAAA 60.599 50.000 8.93 8.93 0.00 3.68
1923 2256 1.006805 CGCGGGTGATTTTTGGCAA 60.007 52.632 0.00 0.00 0.00 4.52
1924 2257 1.456196 TTCGCGGGTGATTTTTGGCA 61.456 50.000 6.13 0.00 0.00 4.92
1925 2258 1.006825 GTTCGCGGGTGATTTTTGGC 61.007 55.000 6.13 0.00 0.00 4.52
1926 2259 0.727793 CGTTCGCGGGTGATTTTTGG 60.728 55.000 6.13 0.00 36.88 3.28
1927 2260 2.707192 CGTTCGCGGGTGATTTTTG 58.293 52.632 6.13 0.00 36.88 2.44
1939 2272 3.479269 CTTCGTCTGCCCGTTCGC 61.479 66.667 0.00 0.00 0.00 4.70
1940 2273 1.801913 CTCTTCGTCTGCCCGTTCG 60.802 63.158 0.00 0.00 0.00 3.95
1941 2274 2.095252 GCTCTTCGTCTGCCCGTTC 61.095 63.158 0.00 0.00 0.00 3.95
1942 2275 2.048127 GCTCTTCGTCTGCCCGTT 60.048 61.111 0.00 0.00 0.00 4.44
1943 2276 2.650116 ATGCTCTTCGTCTGCCCGT 61.650 57.895 0.00 0.00 0.00 5.28
1944 2277 2.169789 CATGCTCTTCGTCTGCCCG 61.170 63.158 0.00 0.00 0.00 6.13
1945 2278 1.078848 ACATGCTCTTCGTCTGCCC 60.079 57.895 0.00 0.00 0.00 5.36
1946 2279 0.390340 TCACATGCTCTTCGTCTGCC 60.390 55.000 0.00 0.00 0.00 4.85
1947 2280 1.592081 GATCACATGCTCTTCGTCTGC 59.408 52.381 0.00 0.00 0.00 4.26
1948 2281 1.851053 CGATCACATGCTCTTCGTCTG 59.149 52.381 0.00 0.00 0.00 3.51
1949 2282 1.202348 CCGATCACATGCTCTTCGTCT 60.202 52.381 0.00 0.00 0.00 4.18
1950 2283 1.203928 CCGATCACATGCTCTTCGTC 58.796 55.000 0.00 0.00 0.00 4.20
1951 2284 0.807667 GCCGATCACATGCTCTTCGT 60.808 55.000 0.00 0.00 0.00 3.85
1952 2285 1.815212 CGCCGATCACATGCTCTTCG 61.815 60.000 0.00 0.00 0.00 3.79
1953 2286 1.493950 CCGCCGATCACATGCTCTTC 61.494 60.000 0.00 0.00 0.00 2.87
1954 2287 1.522355 CCGCCGATCACATGCTCTT 60.522 57.895 0.00 0.00 0.00 2.85
1955 2288 2.107750 CCGCCGATCACATGCTCT 59.892 61.111 0.00 0.00 0.00 4.09
1956 2289 1.369091 AAACCGCCGATCACATGCTC 61.369 55.000 0.00 0.00 0.00 4.26
1957 2290 1.369091 GAAACCGCCGATCACATGCT 61.369 55.000 0.00 0.00 0.00 3.79
1958 2291 1.062525 GAAACCGCCGATCACATGC 59.937 57.895 0.00 0.00 0.00 4.06
1959 2292 1.024046 TGGAAACCGCCGATCACATG 61.024 55.000 0.00 0.00 0.00 3.21
1960 2293 0.744414 CTGGAAACCGCCGATCACAT 60.744 55.000 0.00 0.00 0.00 3.21
1961 2294 1.375396 CTGGAAACCGCCGATCACA 60.375 57.895 0.00 0.00 0.00 3.58
1962 2295 1.079405 TCTGGAAACCGCCGATCAC 60.079 57.895 0.00 0.00 0.00 3.06
1963 2296 1.218047 CTCTGGAAACCGCCGATCA 59.782 57.895 0.00 0.00 0.00 2.92
1964 2297 0.391263 AACTCTGGAAACCGCCGATC 60.391 55.000 0.00 0.00 0.00 3.69
1965 2298 0.673644 CAACTCTGGAAACCGCCGAT 60.674 55.000 0.00 0.00 0.00 4.18
1966 2299 1.301401 CAACTCTGGAAACCGCCGA 60.301 57.895 0.00 0.00 0.00 5.54
1967 2300 2.966309 GCAACTCTGGAAACCGCCG 61.966 63.158 0.00 0.00 0.00 6.46
1968 2301 1.856265 CTGCAACTCTGGAAACCGCC 61.856 60.000 0.00 0.00 0.00 6.13
1969 2302 0.884704 TCTGCAACTCTGGAAACCGC 60.885 55.000 0.00 0.00 0.00 5.68
1970 2303 1.151668 CTCTGCAACTCTGGAAACCG 58.848 55.000 0.00 0.00 0.00 4.44
1971 2304 0.877743 GCTCTGCAACTCTGGAAACC 59.122 55.000 0.00 0.00 0.00 3.27
1972 2305 1.534595 CTGCTCTGCAACTCTGGAAAC 59.465 52.381 0.00 0.00 38.41 2.78
1973 2306 1.417517 TCTGCTCTGCAACTCTGGAAA 59.582 47.619 0.00 0.00 38.41 3.13
1974 2307 1.001746 CTCTGCTCTGCAACTCTGGAA 59.998 52.381 0.00 0.00 38.41 3.53
1975 2308 0.607112 CTCTGCTCTGCAACTCTGGA 59.393 55.000 0.00 0.00 38.41 3.86
1976 2309 1.020333 GCTCTGCTCTGCAACTCTGG 61.020 60.000 0.00 0.00 38.41 3.86
1977 2310 1.352882 CGCTCTGCTCTGCAACTCTG 61.353 60.000 0.00 0.00 38.41 3.35
1978 2311 1.079956 CGCTCTGCTCTGCAACTCT 60.080 57.895 0.00 0.00 38.41 3.24
1979 2312 2.099431 CCGCTCTGCTCTGCAACTC 61.099 63.158 0.00 0.00 38.41 3.01
1980 2313 2.047465 CCGCTCTGCTCTGCAACT 60.047 61.111 0.00 0.00 38.41 3.16
1981 2314 3.123620 CCCGCTCTGCTCTGCAAC 61.124 66.667 0.00 0.00 38.41 4.17
1985 2318 3.123620 GTTGCCCGCTCTGCTCTG 61.124 66.667 0.00 0.00 0.00 3.35
1986 2319 4.400961 GGTTGCCCGCTCTGCTCT 62.401 66.667 0.00 0.00 0.00 4.09
1996 2329 4.424711 TGAGGATGCCGGTTGCCC 62.425 66.667 1.90 0.00 40.16 5.36
1997 2330 2.825836 CTGAGGATGCCGGTTGCC 60.826 66.667 1.90 1.34 40.16 4.52
1998 2331 3.512516 GCTGAGGATGCCGGTTGC 61.513 66.667 1.90 0.00 41.77 4.17
1999 2332 3.197790 CGCTGAGGATGCCGGTTG 61.198 66.667 1.90 0.00 0.00 3.77
2000 2333 4.473520 CCGCTGAGGATGCCGGTT 62.474 66.667 1.90 0.00 45.00 4.44
2009 2342 2.279120 GCATCGTCTCCGCTGAGG 60.279 66.667 5.22 0.00 39.23 3.86
2010 2343 1.875813 GTGCATCGTCTCCGCTGAG 60.876 63.158 0.00 0.00 40.17 3.35
2011 2344 1.877576 AAGTGCATCGTCTCCGCTGA 61.878 55.000 0.00 0.00 32.09 4.26
2012 2345 1.416813 GAAGTGCATCGTCTCCGCTG 61.417 60.000 0.00 0.00 33.51 5.18
2013 2346 1.153745 GAAGTGCATCGTCTCCGCT 60.154 57.895 0.00 0.00 0.00 5.52
2014 2347 2.167861 GGAAGTGCATCGTCTCCGC 61.168 63.158 0.00 0.00 0.00 5.54
2015 2348 1.874019 CGGAAGTGCATCGTCTCCG 60.874 63.158 9.48 9.48 0.00 4.63
2016 2349 0.108804 TTCGGAAGTGCATCGTCTCC 60.109 55.000 0.00 0.00 0.00 3.71
2017 2350 1.272781 CTTCGGAAGTGCATCGTCTC 58.727 55.000 9.61 0.00 0.00 3.36
2018 2351 0.737715 GCTTCGGAAGTGCATCGTCT 60.738 55.000 18.32 0.00 0.00 4.18
2019 2352 1.014044 TGCTTCGGAAGTGCATCGTC 61.014 55.000 18.32 0.84 36.94 4.20
2020 2353 1.005037 TGCTTCGGAAGTGCATCGT 60.005 52.632 18.32 0.00 36.94 3.73
2021 2354 0.737367 TCTGCTTCGGAAGTGCATCG 60.737 55.000 18.32 2.92 39.72 3.84
2022 2355 1.129437 GTTCTGCTTCGGAAGTGCATC 59.871 52.381 18.32 2.87 39.72 3.91
2023 2356 1.160137 GTTCTGCTTCGGAAGTGCAT 58.840 50.000 18.32 0.00 39.72 3.96
2024 2357 1.221466 CGTTCTGCTTCGGAAGTGCA 61.221 55.000 18.32 11.35 38.69 4.57
2025 2358 1.493311 CGTTCTGCTTCGGAAGTGC 59.507 57.895 18.32 7.26 28.60 4.40
2026 2359 1.493311 GCGTTCTGCTTCGGAAGTG 59.507 57.895 18.32 11.86 41.73 3.16
2027 2360 1.668151 GGCGTTCTGCTTCGGAAGT 60.668 57.895 18.32 0.00 45.43 3.01
2028 2361 1.355066 GAGGCGTTCTGCTTCGGAAG 61.355 60.000 13.39 13.39 45.43 3.46
2029 2362 1.374252 GAGGCGTTCTGCTTCGGAA 60.374 57.895 0.00 0.00 45.43 4.30
2030 2363 2.261671 GAGGCGTTCTGCTTCGGA 59.738 61.111 0.00 0.00 45.43 4.55
2043 2376 2.954868 CGTATCCACACGCGAGGC 60.955 66.667 15.93 0.00 34.78 4.70
2049 2382 2.889617 TGGAGGCGTATCCACACG 59.110 61.111 6.64 0.00 44.56 4.49
2054 2387 2.640316 AAGGAAATGGAGGCGTATCC 57.360 50.000 1.46 1.46 40.03 2.59
2055 2388 4.983671 AAAAAGGAAATGGAGGCGTATC 57.016 40.909 0.00 0.00 0.00 2.24
2056 2389 5.506708 ACTAAAAAGGAAATGGAGGCGTAT 58.493 37.500 0.00 0.00 0.00 3.06
2057 2390 4.913784 ACTAAAAAGGAAATGGAGGCGTA 58.086 39.130 0.00 0.00 0.00 4.42
2058 2391 3.763057 ACTAAAAAGGAAATGGAGGCGT 58.237 40.909 0.00 0.00 0.00 5.68
2059 2392 4.671766 CGAACTAAAAAGGAAATGGAGGCG 60.672 45.833 0.00 0.00 0.00 5.52
2060 2393 4.380550 CCGAACTAAAAAGGAAATGGAGGC 60.381 45.833 0.00 0.00 0.00 4.70
2061 2394 5.007682 TCCGAACTAAAAAGGAAATGGAGG 58.992 41.667 0.00 0.00 0.00 4.30
2062 2395 6.555315 CATCCGAACTAAAAAGGAAATGGAG 58.445 40.000 0.00 0.00 36.25 3.86
2063 2396 5.105917 GCATCCGAACTAAAAAGGAAATGGA 60.106 40.000 0.00 0.00 36.25 3.41
2064 2397 5.102313 GCATCCGAACTAAAAAGGAAATGG 58.898 41.667 0.00 0.00 36.25 3.16
2065 2398 5.708948 TGCATCCGAACTAAAAAGGAAATG 58.291 37.500 0.00 0.00 36.25 2.32
2066 2399 5.710099 TCTGCATCCGAACTAAAAAGGAAAT 59.290 36.000 0.00 0.00 36.25 2.17
2067 2400 5.067273 TCTGCATCCGAACTAAAAAGGAAA 58.933 37.500 0.00 0.00 36.25 3.13
2068 2401 4.647611 TCTGCATCCGAACTAAAAAGGAA 58.352 39.130 0.00 0.00 36.25 3.36
2069 2402 4.280436 TCTGCATCCGAACTAAAAAGGA 57.720 40.909 0.00 0.00 37.17 3.36
2078 2411 0.099436 GTTGGCATCTGCATCCGAAC 59.901 55.000 4.33 0.00 44.36 3.95
2139 2472 4.283978 AGCATTGGTGATTGAACAATCCAA 59.716 37.500 20.15 18.47 44.93 3.53
2148 2481 5.534278 TGTGAAAAGTAGCATTGGTGATTGA 59.466 36.000 0.00 0.00 0.00 2.57
2150 2483 5.536161 AGTGTGAAAAGTAGCATTGGTGATT 59.464 36.000 0.00 0.00 0.00 2.57
2151 2484 5.072741 AGTGTGAAAAGTAGCATTGGTGAT 58.927 37.500 0.00 0.00 0.00 3.06
2152 2485 4.460263 AGTGTGAAAAGTAGCATTGGTGA 58.540 39.130 0.00 0.00 0.00 4.02
2153 2486 4.836125 AGTGTGAAAAGTAGCATTGGTG 57.164 40.909 0.00 0.00 0.00 4.17
2154 2487 5.473504 CCTAAGTGTGAAAAGTAGCATTGGT 59.526 40.000 0.00 0.00 0.00 3.67
2155 2488 5.473504 ACCTAAGTGTGAAAAGTAGCATTGG 59.526 40.000 0.00 0.00 0.00 3.16
2156 2489 6.560253 ACCTAAGTGTGAAAAGTAGCATTG 57.440 37.500 0.00 0.00 0.00 2.82
2157 2490 7.582667 AAACCTAAGTGTGAAAAGTAGCATT 57.417 32.000 0.00 0.00 0.00 3.56
2161 2494 6.703165 ACGGTAAACCTAAGTGTGAAAAGTAG 59.297 38.462 0.00 0.00 0.00 2.57
2162 2495 6.581712 ACGGTAAACCTAAGTGTGAAAAGTA 58.418 36.000 0.00 0.00 0.00 2.24
2211 2545 8.261522 AGACACTCTAATCTTCTTAATGGGAAC 58.738 37.037 0.00 0.00 0.00 3.62
2212 2546 8.260818 CAGACACTCTAATCTTCTTAATGGGAA 58.739 37.037 0.00 0.00 0.00 3.97
2214 2548 7.786030 TCAGACACTCTAATCTTCTTAATGGG 58.214 38.462 0.00 0.00 0.00 4.00
2245 2579 0.555769 AGGCACTCACCCCTCAAAAA 59.444 50.000 0.00 0.00 0.00 1.94
2265 4144 6.093404 TCGCTCTGTCTTTGACTAAGTAATG 58.907 40.000 0.00 0.00 35.28 1.90
2270 4149 5.234329 TGTTTTCGCTCTGTCTTTGACTAAG 59.766 40.000 0.00 0.00 33.15 2.18
2278 4157 6.704493 TGTAATTACTGTTTTCGCTCTGTCTT 59.296 34.615 16.33 0.00 0.00 3.01
2281 4160 5.408604 CCTGTAATTACTGTTTTCGCTCTGT 59.591 40.000 16.33 0.00 0.00 3.41
2321 4200 9.420551 CCTTCTGTTTCGTACTAGTTAGAAAAT 57.579 33.333 20.04 0.00 34.86 1.82
2322 4201 8.632679 TCCTTCTGTTTCGTACTAGTTAGAAAA 58.367 33.333 20.04 12.83 34.86 2.29
2323 4202 8.169977 TCCTTCTGTTTCGTACTAGTTAGAAA 57.830 34.615 16.55 16.55 0.00 2.52
2324 4203 7.750229 TCCTTCTGTTTCGTACTAGTTAGAA 57.250 36.000 0.00 4.62 0.00 2.10
2325 4204 7.750229 TTCCTTCTGTTTCGTACTAGTTAGA 57.250 36.000 0.00 0.00 0.00 2.10
2326 4205 8.807667 TTTTCCTTCTGTTTCGTACTAGTTAG 57.192 34.615 0.00 0.00 0.00 2.34
2380 4261 1.453928 GGTGGGGAATAGTGCTGCC 60.454 63.158 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.