Multiple sequence alignment - TraesCS5D01G288700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G288700 chr5D 100.000 3446 0 0 1 3446 387730269 387726824 0.000000e+00 6364
1 TraesCS5D01G288700 chr5A 92.816 2951 112 36 531 3446 490817133 490814248 0.000000e+00 4183
2 TraesCS5D01G288700 chr5B 93.743 2781 104 38 693 3436 466334328 466331581 0.000000e+00 4108
3 TraesCS5D01G288700 chr7B 84.000 1375 176 30 1010 2359 204687294 204685939 0.000000e+00 1280
4 TraesCS5D01G288700 chr7B 77.314 983 178 33 1350 2307 59100621 59099659 3.910000e-149 538
5 TraesCS5D01G288700 chr7A 84.038 1372 172 29 1010 2359 245595016 245596362 0.000000e+00 1277
6 TraesCS5D01G288700 chr7D 83.942 1370 177 26 1010 2359 233214364 233213018 0.000000e+00 1271
7 TraesCS5D01G288700 chr6D 80.957 982 147 29 1358 2316 436832690 436833654 0.000000e+00 741
8 TraesCS5D01G288700 chr6A 80.734 981 151 28 1358 2316 585108869 585109833 0.000000e+00 730
9 TraesCS5D01G288700 chr6B 80.530 981 153 28 1358 2316 660564099 660563135 0.000000e+00 719


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G288700 chr5D 387726824 387730269 3445 True 6364 6364 100.000 1 3446 1 chr5D.!!$R1 3445
1 TraesCS5D01G288700 chr5A 490814248 490817133 2885 True 4183 4183 92.816 531 3446 1 chr5A.!!$R1 2915
2 TraesCS5D01G288700 chr5B 466331581 466334328 2747 True 4108 4108 93.743 693 3436 1 chr5B.!!$R1 2743
3 TraesCS5D01G288700 chr7B 204685939 204687294 1355 True 1280 1280 84.000 1010 2359 1 chr7B.!!$R2 1349
4 TraesCS5D01G288700 chr7B 59099659 59100621 962 True 538 538 77.314 1350 2307 1 chr7B.!!$R1 957
5 TraesCS5D01G288700 chr7A 245595016 245596362 1346 False 1277 1277 84.038 1010 2359 1 chr7A.!!$F1 1349
6 TraesCS5D01G288700 chr7D 233213018 233214364 1346 True 1271 1271 83.942 1010 2359 1 chr7D.!!$R1 1349
7 TraesCS5D01G288700 chr6D 436832690 436833654 964 False 741 741 80.957 1358 2316 1 chr6D.!!$F1 958
8 TraesCS5D01G288700 chr6A 585108869 585109833 964 False 730 730 80.734 1358 2316 1 chr6A.!!$F1 958
9 TraesCS5D01G288700 chr6B 660563135 660564099 964 True 719 719 80.530 1358 2316 1 chr6B.!!$R1 958

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 486 0.032416 TAGAGGGAGTACACAGGGCC 60.032 60.0 0.0 0.0 0.0 5.80 F
522 523 0.036306 GGGTCTCCGCTCCAGAAAAA 59.964 55.0 0.0 0.0 0.0 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2403 2454 2.101233 GGCCTTCTTCTTCGTCGCC 61.101 63.158 0.0 0.0 0.0 5.54 R
2468 2527 2.107953 GGTGCTCCATCTCTCGCC 59.892 66.667 0.0 0.0 0.0 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.106439 GTCATCTAGATATGTCTACATGGGG 57.894 44.000 4.54 0.00 35.35 4.96
25 26 5.658634 TCATCTAGATATGTCTACATGGGGC 59.341 44.000 4.54 0.00 35.35 5.80
26 27 5.010708 TCTAGATATGTCTACATGGGGCA 57.989 43.478 5.85 0.00 37.15 5.36
27 28 5.402630 TCTAGATATGTCTACATGGGGCAA 58.597 41.667 5.85 0.00 37.15 4.52
28 29 6.025539 TCTAGATATGTCTACATGGGGCAAT 58.974 40.000 5.85 0.00 37.15 3.56
29 30 5.171339 AGATATGTCTACATGGGGCAATC 57.829 43.478 5.85 4.23 37.15 2.67
30 31 4.848660 AGATATGTCTACATGGGGCAATCT 59.151 41.667 5.85 6.16 37.15 2.40
31 32 6.025539 AGATATGTCTACATGGGGCAATCTA 58.974 40.000 5.85 0.00 37.15 1.98
32 33 4.630644 ATGTCTACATGGGGCAATCTAG 57.369 45.455 0.00 0.00 34.83 2.43
33 34 3.653164 TGTCTACATGGGGCAATCTAGA 58.347 45.455 0.00 0.00 0.00 2.43
34 35 4.234550 TGTCTACATGGGGCAATCTAGAT 58.765 43.478 0.00 0.00 0.00 1.98
35 36 4.040829 TGTCTACATGGGGCAATCTAGATG 59.959 45.833 5.86 2.06 0.00 2.90
36 37 4.284490 GTCTACATGGGGCAATCTAGATGA 59.716 45.833 5.86 0.00 0.00 2.92
37 38 4.907269 TCTACATGGGGCAATCTAGATGAA 59.093 41.667 5.86 0.00 0.00 2.57
38 39 3.825328 ACATGGGGCAATCTAGATGAAC 58.175 45.455 5.86 0.00 0.00 3.18
39 40 3.202818 ACATGGGGCAATCTAGATGAACA 59.797 43.478 5.86 2.46 0.00 3.18
40 41 4.209538 CATGGGGCAATCTAGATGAACAA 58.790 43.478 5.86 0.00 0.00 2.83
41 42 3.620488 TGGGGCAATCTAGATGAACAAC 58.380 45.455 5.86 0.00 0.00 3.32
42 43 3.266772 TGGGGCAATCTAGATGAACAACT 59.733 43.478 5.86 0.00 0.00 3.16
43 44 4.263905 TGGGGCAATCTAGATGAACAACTT 60.264 41.667 5.86 0.00 0.00 2.66
44 45 5.045213 TGGGGCAATCTAGATGAACAACTTA 60.045 40.000 5.86 0.00 0.00 2.24
45 46 5.529060 GGGGCAATCTAGATGAACAACTTAG 59.471 44.000 5.86 0.00 0.00 2.18
46 47 6.349300 GGGCAATCTAGATGAACAACTTAGA 58.651 40.000 5.86 0.00 0.00 2.10
47 48 6.823689 GGGCAATCTAGATGAACAACTTAGAA 59.176 38.462 5.86 0.00 0.00 2.10
48 49 7.201652 GGGCAATCTAGATGAACAACTTAGAAC 60.202 40.741 5.86 0.00 0.00 3.01
49 50 7.334421 GGCAATCTAGATGAACAACTTAGAACA 59.666 37.037 5.86 0.00 0.00 3.18
50 51 8.171840 GCAATCTAGATGAACAACTTAGAACAC 58.828 37.037 5.86 0.00 0.00 3.32
51 52 8.376203 CAATCTAGATGAACAACTTAGAACACG 58.624 37.037 5.86 0.00 0.00 4.49
52 53 6.387465 TCTAGATGAACAACTTAGAACACGG 58.613 40.000 0.00 0.00 0.00 4.94
53 54 4.957296 AGATGAACAACTTAGAACACGGT 58.043 39.130 0.00 0.00 0.00 4.83
54 55 4.750098 AGATGAACAACTTAGAACACGGTG 59.250 41.667 6.58 6.58 0.00 4.94
55 56 3.199677 TGAACAACTTAGAACACGGTGG 58.800 45.455 13.48 0.00 0.00 4.61
56 57 1.589803 ACAACTTAGAACACGGTGGC 58.410 50.000 13.48 4.15 0.00 5.01
57 58 1.134340 ACAACTTAGAACACGGTGGCA 60.134 47.619 13.48 0.00 0.00 4.92
58 59 1.263217 CAACTTAGAACACGGTGGCAC 59.737 52.381 9.70 9.70 0.00 5.01
59 60 0.250166 ACTTAGAACACGGTGGCACC 60.250 55.000 26.95 26.95 34.05 5.01
60 61 0.953960 CTTAGAACACGGTGGCACCC 60.954 60.000 30.03 15.92 33.75 4.61
61 62 1.697082 TTAGAACACGGTGGCACCCA 61.697 55.000 30.03 4.60 33.75 4.51
62 63 1.697082 TAGAACACGGTGGCACCCAA 61.697 55.000 30.03 5.67 34.18 4.12
63 64 2.518349 AACACGGTGGCACCCAAG 60.518 61.111 30.03 21.20 34.18 3.61
64 65 3.352990 AACACGGTGGCACCCAAGT 62.353 57.895 30.03 21.84 34.18 3.16
65 66 2.978010 CACGGTGGCACCCAAGTC 60.978 66.667 30.03 5.13 34.18 3.01
66 67 3.168528 ACGGTGGCACCCAAGTCT 61.169 61.111 30.03 3.58 34.18 3.24
67 68 2.113139 CGGTGGCACCCAAGTCTT 59.887 61.111 30.03 0.00 34.18 3.01
68 69 1.966451 CGGTGGCACCCAAGTCTTC 60.966 63.158 30.03 2.82 34.18 2.87
69 70 1.603739 GGTGGCACCCAAGTCTTCC 60.604 63.158 26.51 0.00 34.18 3.46
70 71 1.150536 GTGGCACCCAAGTCTTCCA 59.849 57.895 6.29 0.00 34.18 3.53
71 72 0.251341 GTGGCACCCAAGTCTTCCAT 60.251 55.000 6.29 0.00 34.18 3.41
72 73 1.004277 GTGGCACCCAAGTCTTCCATA 59.996 52.381 6.29 0.00 34.18 2.74
73 74 1.707989 TGGCACCCAAGTCTTCCATAA 59.292 47.619 0.00 0.00 0.00 1.90
74 75 2.290896 TGGCACCCAAGTCTTCCATAAG 60.291 50.000 0.00 0.00 0.00 1.73
75 76 2.026262 GGCACCCAAGTCTTCCATAAGA 60.026 50.000 0.00 0.00 39.47 2.10
76 77 3.561313 GGCACCCAAGTCTTCCATAAGAA 60.561 47.826 0.00 0.00 43.30 2.52
77 78 3.440522 GCACCCAAGTCTTCCATAAGAAC 59.559 47.826 0.00 0.00 43.30 3.01
78 79 4.651778 CACCCAAGTCTTCCATAAGAACA 58.348 43.478 0.00 0.00 43.30 3.18
79 80 5.256474 CACCCAAGTCTTCCATAAGAACAT 58.744 41.667 0.00 0.00 43.30 2.71
80 81 5.711976 CACCCAAGTCTTCCATAAGAACATT 59.288 40.000 0.00 0.00 43.30 2.71
81 82 5.711976 ACCCAAGTCTTCCATAAGAACATTG 59.288 40.000 0.00 0.00 43.30 2.82
82 83 5.945784 CCCAAGTCTTCCATAAGAACATTGA 59.054 40.000 0.00 0.00 43.30 2.57
83 84 6.434028 CCCAAGTCTTCCATAAGAACATTGAA 59.566 38.462 0.00 0.00 43.30 2.69
84 85 7.362401 CCCAAGTCTTCCATAAGAACATTGAAG 60.362 40.741 0.00 0.00 43.30 3.02
85 86 7.391554 CCAAGTCTTCCATAAGAACATTGAAGA 59.608 37.037 0.00 0.00 43.30 2.87
87 88 6.766084 GTCTTCCATAAGAACATTGAAGACG 58.234 40.000 12.67 0.00 42.74 4.18
88 89 6.590292 GTCTTCCATAAGAACATTGAAGACGA 59.410 38.462 12.67 0.00 42.74 4.20
89 90 6.813649 TCTTCCATAAGAACATTGAAGACGAG 59.186 38.462 0.00 0.00 38.81 4.18
90 91 4.870426 TCCATAAGAACATTGAAGACGAGC 59.130 41.667 0.00 0.00 0.00 5.03
91 92 4.631377 CCATAAGAACATTGAAGACGAGCA 59.369 41.667 0.00 0.00 0.00 4.26
92 93 5.220548 CCATAAGAACATTGAAGACGAGCAG 60.221 44.000 0.00 0.00 0.00 4.24
93 94 2.072298 AGAACATTGAAGACGAGCAGC 58.928 47.619 0.00 0.00 0.00 5.25
95 96 0.038251 ACATTGAAGACGAGCAGCGA 60.038 50.000 5.99 0.00 44.57 4.93
96 97 0.644331 CATTGAAGACGAGCAGCGAG 59.356 55.000 5.99 0.00 44.57 5.03
97 98 0.528017 ATTGAAGACGAGCAGCGAGA 59.472 50.000 5.99 0.00 44.57 4.04
98 99 0.387367 TTGAAGACGAGCAGCGAGAC 60.387 55.000 5.99 0.00 44.57 3.36
99 100 1.210413 GAAGACGAGCAGCGAGACA 59.790 57.895 5.99 0.00 44.57 3.41
100 101 0.387367 GAAGACGAGCAGCGAGACAA 60.387 55.000 5.99 0.00 44.57 3.18
101 102 0.664767 AAGACGAGCAGCGAGACAAC 60.665 55.000 5.99 0.00 44.57 3.32
102 103 2.049063 ACGAGCAGCGAGACAACC 60.049 61.111 5.99 0.00 44.57 3.77
103 104 2.811317 CGAGCAGCGAGACAACCC 60.811 66.667 0.00 0.00 44.57 4.11
104 105 2.435059 GAGCAGCGAGACAACCCC 60.435 66.667 0.00 0.00 0.00 4.95
105 106 2.925170 AGCAGCGAGACAACCCCT 60.925 61.111 0.00 0.00 0.00 4.79
106 107 2.435059 GCAGCGAGACAACCCCTC 60.435 66.667 0.00 0.00 0.00 4.30
113 114 2.943449 GAGACAACCCCTCGAAGTAG 57.057 55.000 0.00 0.00 0.00 2.57
114 115 1.477295 GAGACAACCCCTCGAAGTAGG 59.523 57.143 0.00 0.00 36.30 3.18
115 116 1.076677 AGACAACCCCTCGAAGTAGGA 59.923 52.381 0.00 0.00 39.15 2.94
116 117 2.108970 GACAACCCCTCGAAGTAGGAT 58.891 52.381 0.00 0.00 39.15 3.24
117 118 3.053095 AGACAACCCCTCGAAGTAGGATA 60.053 47.826 0.00 0.00 39.15 2.59
118 119 3.703052 GACAACCCCTCGAAGTAGGATAA 59.297 47.826 0.00 0.00 39.15 1.75
119 120 3.705072 ACAACCCCTCGAAGTAGGATAAG 59.295 47.826 0.00 0.00 39.15 1.73
120 121 3.684408 ACCCCTCGAAGTAGGATAAGT 57.316 47.619 0.00 0.00 39.15 2.24
121 122 4.803329 ACCCCTCGAAGTAGGATAAGTA 57.197 45.455 0.00 0.00 39.15 2.24
122 123 4.468713 ACCCCTCGAAGTAGGATAAGTAC 58.531 47.826 0.00 0.00 39.15 2.73
123 124 3.825585 CCCCTCGAAGTAGGATAAGTACC 59.174 52.174 0.00 0.00 39.15 3.34
124 125 4.447470 CCCCTCGAAGTAGGATAAGTACCT 60.447 50.000 0.00 0.00 39.15 3.08
125 126 4.761227 CCCTCGAAGTAGGATAAGTACCTC 59.239 50.000 0.00 0.00 39.15 3.85
126 127 4.451774 CCTCGAAGTAGGATAAGTACCTCG 59.548 50.000 0.00 0.00 39.15 4.63
127 128 5.282055 TCGAAGTAGGATAAGTACCTCGA 57.718 43.478 0.00 0.94 39.73 4.04
128 129 5.053145 TCGAAGTAGGATAAGTACCTCGAC 58.947 45.833 0.00 0.00 38.06 4.20
129 130 4.213059 CGAAGTAGGATAAGTACCTCGACC 59.787 50.000 0.00 0.00 36.76 4.79
130 131 5.375773 GAAGTAGGATAAGTACCTCGACCT 58.624 45.833 0.00 0.00 38.76 3.85
131 132 6.506538 AAGTAGGATAAGTACCTCGACCTA 57.493 41.667 0.00 0.00 38.76 3.08
132 133 6.700845 AGTAGGATAAGTACCTCGACCTAT 57.299 41.667 0.00 0.00 38.76 2.57
133 134 6.710278 AGTAGGATAAGTACCTCGACCTATC 58.290 44.000 0.00 0.00 38.76 2.08
134 135 5.846528 AGGATAAGTACCTCGACCTATCT 57.153 43.478 0.00 0.00 31.43 1.98
135 136 5.562635 AGGATAAGTACCTCGACCTATCTG 58.437 45.833 0.00 0.00 31.43 2.90
136 137 5.073417 AGGATAAGTACCTCGACCTATCTGT 59.927 44.000 0.00 0.00 31.43 3.41
137 138 6.271857 AGGATAAGTACCTCGACCTATCTGTA 59.728 42.308 0.00 0.00 31.43 2.74
138 139 6.939163 GGATAAGTACCTCGACCTATCTGTAA 59.061 42.308 0.00 0.00 0.00 2.41
139 140 7.446625 GGATAAGTACCTCGACCTATCTGTAAA 59.553 40.741 0.00 0.00 0.00 2.01
140 141 8.757982 ATAAGTACCTCGACCTATCTGTAAAA 57.242 34.615 0.00 0.00 0.00 1.52
141 142 6.448207 AGTACCTCGACCTATCTGTAAAAC 57.552 41.667 0.00 0.00 0.00 2.43
142 143 4.732672 ACCTCGACCTATCTGTAAAACC 57.267 45.455 0.00 0.00 0.00 3.27
143 144 4.091549 ACCTCGACCTATCTGTAAAACCA 58.908 43.478 0.00 0.00 0.00 3.67
144 145 4.081807 ACCTCGACCTATCTGTAAAACCAC 60.082 45.833 0.00 0.00 0.00 4.16
145 146 4.430908 CTCGACCTATCTGTAAAACCACC 58.569 47.826 0.00 0.00 0.00 4.61
146 147 3.119388 TCGACCTATCTGTAAAACCACCG 60.119 47.826 0.00 0.00 0.00 4.94
147 148 3.528532 GACCTATCTGTAAAACCACCGG 58.471 50.000 0.00 0.00 0.00 5.28
148 149 2.285977 CCTATCTGTAAAACCACCGGC 58.714 52.381 0.00 0.00 0.00 6.13
149 150 1.931172 CTATCTGTAAAACCACCGGCG 59.069 52.381 0.00 0.00 0.00 6.46
150 151 0.675522 ATCTGTAAAACCACCGGCGG 60.676 55.000 27.06 27.06 0.00 6.13
151 152 2.281622 TGTAAAACCACCGGCGGG 60.282 61.111 31.78 18.68 40.11 6.13
152 153 3.740397 GTAAAACCACCGGCGGGC 61.740 66.667 31.78 5.63 36.48 6.13
164 165 4.759205 GCGGGCCCCAAAGTCCAT 62.759 66.667 18.66 0.00 0.00 3.41
165 166 2.755469 CGGGCCCCAAAGTCCATG 60.755 66.667 18.66 0.00 0.00 3.66
166 167 2.445155 GGGCCCCAAAGTCCATGT 59.555 61.111 12.23 0.00 0.00 3.21
167 168 1.682344 GGGCCCCAAAGTCCATGTC 60.682 63.158 12.23 0.00 0.00 3.06
168 169 1.682344 GGCCCCAAAGTCCATGTCC 60.682 63.158 0.00 0.00 0.00 4.02
169 170 1.076549 GCCCCAAAGTCCATGTCCA 59.923 57.895 0.00 0.00 0.00 4.02
170 171 1.250840 GCCCCAAAGTCCATGTCCAC 61.251 60.000 0.00 0.00 0.00 4.02
171 172 0.960364 CCCCAAAGTCCATGTCCACG 60.960 60.000 0.00 0.00 0.00 4.94
172 173 0.036164 CCCAAAGTCCATGTCCACGA 59.964 55.000 0.00 0.00 0.00 4.35
173 174 1.544537 CCCAAAGTCCATGTCCACGAA 60.545 52.381 0.00 0.00 0.00 3.85
174 175 1.535462 CCAAAGTCCATGTCCACGAAC 59.465 52.381 0.00 0.00 0.00 3.95
175 176 1.535462 CAAAGTCCATGTCCACGAACC 59.465 52.381 0.00 0.00 0.00 3.62
176 177 0.762418 AAGTCCATGTCCACGAACCA 59.238 50.000 0.00 0.00 0.00 3.67
177 178 0.762418 AGTCCATGTCCACGAACCAA 59.238 50.000 0.00 0.00 0.00 3.67
178 179 0.872388 GTCCATGTCCACGAACCAAC 59.128 55.000 0.00 0.00 0.00 3.77
179 180 0.470341 TCCATGTCCACGAACCAACA 59.530 50.000 0.00 0.00 0.00 3.33
180 181 0.874390 CCATGTCCACGAACCAACAG 59.126 55.000 0.00 0.00 0.00 3.16
181 182 1.593196 CATGTCCACGAACCAACAGT 58.407 50.000 0.00 0.00 0.00 3.55
182 183 2.549134 CCATGTCCACGAACCAACAGTA 60.549 50.000 0.00 0.00 0.00 2.74
183 184 3.334691 CATGTCCACGAACCAACAGTAT 58.665 45.455 0.00 0.00 0.00 2.12
184 185 3.478857 TGTCCACGAACCAACAGTATT 57.521 42.857 0.00 0.00 0.00 1.89
185 186 3.135225 TGTCCACGAACCAACAGTATTG 58.865 45.455 0.00 0.00 0.00 1.90
186 187 2.482721 GTCCACGAACCAACAGTATTGG 59.517 50.000 0.00 0.00 44.91 3.16
187 188 1.810151 CCACGAACCAACAGTATTGGG 59.190 52.381 4.93 0.00 43.71 4.12
188 189 1.810151 CACGAACCAACAGTATTGGGG 59.190 52.381 4.93 0.00 43.71 4.96
189 190 1.271707 ACGAACCAACAGTATTGGGGG 60.272 52.381 4.93 0.00 43.71 5.40
190 191 1.271707 CGAACCAACAGTATTGGGGGT 60.272 52.381 4.93 0.00 43.71 4.95
191 192 2.027007 CGAACCAACAGTATTGGGGGTA 60.027 50.000 4.93 0.00 43.71 3.69
192 193 3.559597 CGAACCAACAGTATTGGGGGTAA 60.560 47.826 4.93 0.00 43.71 2.85
193 194 3.732048 ACCAACAGTATTGGGGGTAAG 57.268 47.619 4.93 0.00 43.71 2.34
194 195 2.291346 ACCAACAGTATTGGGGGTAAGC 60.291 50.000 4.93 0.00 43.71 3.09
195 196 2.025321 CCAACAGTATTGGGGGTAAGCT 60.025 50.000 0.00 0.00 35.96 3.74
196 197 3.016736 CAACAGTATTGGGGGTAAGCTG 58.983 50.000 0.00 0.00 0.00 4.24
197 198 1.564348 ACAGTATTGGGGGTAAGCTGG 59.436 52.381 0.00 0.00 0.00 4.85
198 199 1.843851 CAGTATTGGGGGTAAGCTGGA 59.156 52.381 0.00 0.00 0.00 3.86
199 200 2.443255 CAGTATTGGGGGTAAGCTGGAT 59.557 50.000 0.00 0.00 0.00 3.41
200 201 3.117512 CAGTATTGGGGGTAAGCTGGATT 60.118 47.826 0.00 0.00 0.00 3.01
201 202 4.104102 CAGTATTGGGGGTAAGCTGGATTA 59.896 45.833 0.00 0.00 0.00 1.75
202 203 3.595190 ATTGGGGGTAAGCTGGATTAC 57.405 47.619 0.00 0.72 35.35 1.89
214 215 3.705043 CTGGATTACCTGCATTGCTTC 57.295 47.619 10.49 0.00 37.04 3.86
215 216 2.360165 CTGGATTACCTGCATTGCTTCC 59.640 50.000 10.49 7.16 37.04 3.46
216 217 1.683385 GGATTACCTGCATTGCTTCCC 59.317 52.381 10.49 0.00 0.00 3.97
217 218 2.378038 GATTACCTGCATTGCTTCCCA 58.622 47.619 10.49 0.00 0.00 4.37
218 219 1.544724 TTACCTGCATTGCTTCCCAC 58.455 50.000 10.49 0.00 0.00 4.61
219 220 0.403655 TACCTGCATTGCTTCCCACA 59.596 50.000 10.49 0.00 0.00 4.17
220 221 0.251922 ACCTGCATTGCTTCCCACAT 60.252 50.000 10.49 0.00 0.00 3.21
221 222 1.005805 ACCTGCATTGCTTCCCACATA 59.994 47.619 10.49 0.00 0.00 2.29
222 223 2.313317 CCTGCATTGCTTCCCACATAT 58.687 47.619 10.49 0.00 0.00 1.78
223 224 2.035449 CCTGCATTGCTTCCCACATATG 59.965 50.000 10.49 0.00 0.00 1.78
224 225 2.953648 CTGCATTGCTTCCCACATATGA 59.046 45.455 10.38 0.00 0.00 2.15
225 226 3.363627 TGCATTGCTTCCCACATATGAA 58.636 40.909 10.38 0.00 0.00 2.57
226 227 3.382227 TGCATTGCTTCCCACATATGAAG 59.618 43.478 10.38 3.62 40.72 3.02
227 228 3.633525 GCATTGCTTCCCACATATGAAGA 59.366 43.478 10.38 0.00 40.30 2.87
228 229 4.280174 GCATTGCTTCCCACATATGAAGAT 59.720 41.667 10.38 0.00 40.30 2.40
229 230 5.769367 CATTGCTTCCCACATATGAAGATG 58.231 41.667 10.38 6.36 40.30 2.90
230 231 4.508551 TGCTTCCCACATATGAAGATGT 57.491 40.909 10.38 0.00 40.30 3.06
231 232 4.858850 TGCTTCCCACATATGAAGATGTT 58.141 39.130 10.38 0.00 40.30 2.71
232 233 4.641541 TGCTTCCCACATATGAAGATGTTG 59.358 41.667 10.38 0.00 40.30 3.33
233 234 4.641989 GCTTCCCACATATGAAGATGTTGT 59.358 41.667 10.38 0.00 40.30 3.32
234 235 5.822519 GCTTCCCACATATGAAGATGTTGTA 59.177 40.000 10.38 0.00 40.30 2.41
235 236 6.488006 GCTTCCCACATATGAAGATGTTGTAT 59.512 38.462 10.38 0.00 40.30 2.29
236 237 7.521099 GCTTCCCACATATGAAGATGTTGTATG 60.521 40.741 10.38 4.11 40.30 2.39
237 238 7.135591 TCCCACATATGAAGATGTTGTATGA 57.864 36.000 10.38 0.00 37.99 2.15
238 239 7.572814 TCCCACATATGAAGATGTTGTATGAA 58.427 34.615 10.38 0.00 37.99 2.57
239 240 7.498900 TCCCACATATGAAGATGTTGTATGAAC 59.501 37.037 10.38 0.00 37.99 3.18
240 241 7.282901 CCCACATATGAAGATGTTGTATGAACA 59.717 37.037 10.38 0.00 37.99 3.18
241 242 8.676401 CCACATATGAAGATGTTGTATGAACAA 58.324 33.333 10.38 0.00 43.32 2.83
246 247 7.665561 TGAAGATGTTGTATGAACAAATCGA 57.334 32.000 0.00 0.00 46.84 3.59
247 248 8.267620 TGAAGATGTTGTATGAACAAATCGAT 57.732 30.769 0.00 0.00 46.84 3.59
248 249 8.729756 TGAAGATGTTGTATGAACAAATCGATT 58.270 29.630 4.39 4.39 46.84 3.34
249 250 8.900511 AAGATGTTGTATGAACAAATCGATTG 57.099 30.769 12.25 8.57 46.84 2.67
250 251 6.968904 AGATGTTGTATGAACAAATCGATTGC 59.031 34.615 12.25 2.74 46.84 3.56
251 252 6.006759 TGTTGTATGAACAAATCGATTGCA 57.993 33.333 12.25 8.39 46.84 4.08
252 253 6.442112 TGTTGTATGAACAAATCGATTGCAA 58.558 32.000 12.25 0.00 46.84 4.08
253 254 6.581919 TGTTGTATGAACAAATCGATTGCAAG 59.418 34.615 12.25 5.11 46.84 4.01
254 255 5.639757 TGTATGAACAAATCGATTGCAAGG 58.360 37.500 12.25 0.00 43.13 3.61
255 256 4.789012 ATGAACAAATCGATTGCAAGGT 57.211 36.364 12.25 0.75 43.13 3.50
256 257 3.899734 TGAACAAATCGATTGCAAGGTG 58.100 40.909 12.25 7.54 43.13 4.00
257 258 3.244976 GAACAAATCGATTGCAAGGTGG 58.755 45.455 12.25 0.00 43.13 4.61
258 259 1.545582 ACAAATCGATTGCAAGGTGGG 59.454 47.619 12.25 0.00 43.13 4.61
259 260 1.135024 CAAATCGATTGCAAGGTGGGG 60.135 52.381 12.25 0.00 31.00 4.96
260 261 0.039618 AATCGATTGCAAGGTGGGGT 59.960 50.000 10.50 0.00 0.00 4.95
261 262 0.039618 ATCGATTGCAAGGTGGGGTT 59.960 50.000 4.94 0.00 0.00 4.11
262 263 0.608035 TCGATTGCAAGGTGGGGTTC 60.608 55.000 4.94 0.00 0.00 3.62
263 264 0.893270 CGATTGCAAGGTGGGGTTCA 60.893 55.000 4.94 0.00 0.00 3.18
264 265 1.337118 GATTGCAAGGTGGGGTTCAA 58.663 50.000 4.94 0.00 0.00 2.69
265 266 1.691434 GATTGCAAGGTGGGGTTCAAA 59.309 47.619 4.94 0.00 0.00 2.69
266 267 1.118838 TTGCAAGGTGGGGTTCAAAG 58.881 50.000 0.00 0.00 0.00 2.77
267 268 0.032615 TGCAAGGTGGGGTTCAAAGT 60.033 50.000 0.00 0.00 0.00 2.66
268 269 0.673985 GCAAGGTGGGGTTCAAAGTC 59.326 55.000 0.00 0.00 0.00 3.01
269 270 2.026905 GCAAGGTGGGGTTCAAAGTCA 61.027 52.381 0.00 0.00 0.00 3.41
270 271 2.597455 CAAGGTGGGGTTCAAAGTCAT 58.403 47.619 0.00 0.00 0.00 3.06
271 272 2.292828 AGGTGGGGTTCAAAGTCATG 57.707 50.000 0.00 0.00 0.00 3.07
272 273 1.499007 AGGTGGGGTTCAAAGTCATGT 59.501 47.619 0.00 0.00 0.00 3.21
273 274 2.714250 AGGTGGGGTTCAAAGTCATGTA 59.286 45.455 0.00 0.00 0.00 2.29
274 275 3.333680 AGGTGGGGTTCAAAGTCATGTAT 59.666 43.478 0.00 0.00 0.00 2.29
275 276 3.694566 GGTGGGGTTCAAAGTCATGTATC 59.305 47.826 0.00 0.00 0.00 2.24
276 277 3.694566 GTGGGGTTCAAAGTCATGTATCC 59.305 47.826 0.00 0.00 0.00 2.59
277 278 3.332187 TGGGGTTCAAAGTCATGTATCCA 59.668 43.478 0.00 0.00 0.00 3.41
278 279 3.947834 GGGGTTCAAAGTCATGTATCCAG 59.052 47.826 0.00 0.00 0.00 3.86
279 280 3.378427 GGGTTCAAAGTCATGTATCCAGC 59.622 47.826 0.00 0.00 0.00 4.85
280 281 3.063997 GGTTCAAAGTCATGTATCCAGCG 59.936 47.826 0.00 0.00 0.00 5.18
281 282 3.885724 TCAAAGTCATGTATCCAGCGA 57.114 42.857 0.00 0.00 0.00 4.93
282 283 3.521560 TCAAAGTCATGTATCCAGCGAC 58.478 45.455 0.00 0.00 0.00 5.19
283 284 2.604046 AAGTCATGTATCCAGCGACC 57.396 50.000 0.00 0.00 30.78 4.79
284 285 1.485124 AGTCATGTATCCAGCGACCA 58.515 50.000 0.00 0.00 30.78 4.02
285 286 2.042464 AGTCATGTATCCAGCGACCAT 58.958 47.619 0.00 0.00 30.78 3.55
286 287 2.435805 AGTCATGTATCCAGCGACCATT 59.564 45.455 0.00 0.00 30.78 3.16
287 288 3.641436 AGTCATGTATCCAGCGACCATTA 59.359 43.478 0.00 0.00 30.78 1.90
288 289 3.990469 GTCATGTATCCAGCGACCATTAG 59.010 47.826 0.00 0.00 0.00 1.73
289 290 3.895041 TCATGTATCCAGCGACCATTAGA 59.105 43.478 0.00 0.00 0.00 2.10
290 291 4.021981 TCATGTATCCAGCGACCATTAGAG 60.022 45.833 0.00 0.00 0.00 2.43
291 292 3.562182 TGTATCCAGCGACCATTAGAGA 58.438 45.455 0.00 0.00 0.00 3.10
292 293 3.570125 TGTATCCAGCGACCATTAGAGAG 59.430 47.826 0.00 0.00 0.00 3.20
293 294 2.437085 TCCAGCGACCATTAGAGAGA 57.563 50.000 0.00 0.00 0.00 3.10
294 295 2.302260 TCCAGCGACCATTAGAGAGAG 58.698 52.381 0.00 0.00 0.00 3.20
295 296 1.269517 CCAGCGACCATTAGAGAGAGC 60.270 57.143 0.00 0.00 0.00 4.09
296 297 1.406898 CAGCGACCATTAGAGAGAGCA 59.593 52.381 0.00 0.00 0.00 4.26
297 298 2.035704 CAGCGACCATTAGAGAGAGCAT 59.964 50.000 0.00 0.00 0.00 3.79
298 299 2.697751 AGCGACCATTAGAGAGAGCATT 59.302 45.455 0.00 0.00 0.00 3.56
299 300 3.133721 AGCGACCATTAGAGAGAGCATTT 59.866 43.478 0.00 0.00 0.00 2.32
300 301 3.873952 GCGACCATTAGAGAGAGCATTTT 59.126 43.478 0.00 0.00 0.00 1.82
301 302 4.333926 GCGACCATTAGAGAGAGCATTTTT 59.666 41.667 0.00 0.00 0.00 1.94
302 303 5.523916 GCGACCATTAGAGAGAGCATTTTTA 59.476 40.000 0.00 0.00 0.00 1.52
303 304 6.510317 GCGACCATTAGAGAGAGCATTTTTAC 60.510 42.308 0.00 0.00 0.00 2.01
304 305 6.535150 CGACCATTAGAGAGAGCATTTTTACA 59.465 38.462 0.00 0.00 0.00 2.41
305 306 7.464710 CGACCATTAGAGAGAGCATTTTTACAC 60.465 40.741 0.00 0.00 0.00 2.90
306 307 6.313905 ACCATTAGAGAGAGCATTTTTACACG 59.686 38.462 0.00 0.00 0.00 4.49
307 308 5.779806 TTAGAGAGAGCATTTTTACACGC 57.220 39.130 0.00 0.00 0.00 5.34
308 309 2.668457 AGAGAGAGCATTTTTACACGCG 59.332 45.455 3.53 3.53 0.00 6.01
309 310 2.412089 GAGAGAGCATTTTTACACGCGT 59.588 45.455 5.58 5.58 0.00 6.01
310 311 2.157668 AGAGAGCATTTTTACACGCGTG 59.842 45.455 35.99 35.99 0.00 5.34
311 312 1.196808 AGAGCATTTTTACACGCGTGG 59.803 47.619 39.21 22.33 34.19 4.94
312 313 0.948678 AGCATTTTTACACGCGTGGT 59.051 45.000 39.21 26.98 34.19 4.16
320 321 3.848830 CACGCGTGGTGGCATACG 61.849 66.667 31.15 18.83 43.16 3.06
321 322 4.058732 ACGCGTGGTGGCATACGA 62.059 61.111 24.79 0.00 42.54 3.43
322 323 3.254654 CGCGTGGTGGCATACGAG 61.255 66.667 24.79 19.48 42.54 4.18
323 324 2.890474 GCGTGGTGGCATACGAGG 60.890 66.667 24.79 3.90 42.54 4.63
324 325 2.577059 CGTGGTGGCATACGAGGT 59.423 61.111 18.48 0.00 42.54 3.85
325 326 1.811195 CGTGGTGGCATACGAGGTA 59.189 57.895 18.48 0.00 42.54 3.08
326 327 0.526954 CGTGGTGGCATACGAGGTAC 60.527 60.000 18.48 0.00 42.54 3.34
347 348 9.605951 AGGTACTCCCTCCGTTTATAAATATAA 57.394 33.333 0.31 0.00 40.71 0.98
348 349 9.866798 GGTACTCCCTCCGTTTATAAATATAAG 57.133 37.037 0.31 0.00 30.57 1.73
397 398 6.086319 GTGTATATGAACACGTTTTAGCGT 57.914 37.500 0.00 0.00 46.88 5.07
407 408 4.408993 ACGTTTTAGCGTGTTTATTCCC 57.591 40.909 0.00 0.00 43.99 3.97
408 409 4.067192 ACGTTTTAGCGTGTTTATTCCCT 58.933 39.130 0.00 0.00 43.99 4.20
409 410 4.152938 ACGTTTTAGCGTGTTTATTCCCTC 59.847 41.667 0.00 0.00 43.99 4.30
410 411 4.152759 CGTTTTAGCGTGTTTATTCCCTCA 59.847 41.667 0.00 0.00 0.00 3.86
411 412 5.163794 CGTTTTAGCGTGTTTATTCCCTCAT 60.164 40.000 0.00 0.00 0.00 2.90
412 413 6.617879 GTTTTAGCGTGTTTATTCCCTCATT 58.382 36.000 0.00 0.00 0.00 2.57
413 414 6.431198 TTTAGCGTGTTTATTCCCTCATTC 57.569 37.500 0.00 0.00 0.00 2.67
414 415 3.279434 AGCGTGTTTATTCCCTCATTCC 58.721 45.455 0.00 0.00 0.00 3.01
415 416 3.013921 GCGTGTTTATTCCCTCATTCCA 58.986 45.455 0.00 0.00 0.00 3.53
416 417 3.181500 GCGTGTTTATTCCCTCATTCCAC 60.181 47.826 0.00 0.00 0.00 4.02
417 418 4.006989 CGTGTTTATTCCCTCATTCCACA 58.993 43.478 0.00 0.00 0.00 4.17
418 419 4.094887 CGTGTTTATTCCCTCATTCCACAG 59.905 45.833 0.00 0.00 0.00 3.66
419 420 5.010282 GTGTTTATTCCCTCATTCCACAGT 58.990 41.667 0.00 0.00 0.00 3.55
420 421 5.123979 GTGTTTATTCCCTCATTCCACAGTC 59.876 44.000 0.00 0.00 0.00 3.51
421 422 5.014123 TGTTTATTCCCTCATTCCACAGTCT 59.986 40.000 0.00 0.00 0.00 3.24
422 423 6.214615 TGTTTATTCCCTCATTCCACAGTCTA 59.785 38.462 0.00 0.00 0.00 2.59
423 424 7.092444 TGTTTATTCCCTCATTCCACAGTCTAT 60.092 37.037 0.00 0.00 0.00 1.98
424 425 8.429641 GTTTATTCCCTCATTCCACAGTCTATA 58.570 37.037 0.00 0.00 0.00 1.31
425 426 8.742125 TTATTCCCTCATTCCACAGTCTATAT 57.258 34.615 0.00 0.00 0.00 0.86
426 427 6.425210 TTCCCTCATTCCACAGTCTATATG 57.575 41.667 0.00 0.00 0.00 1.78
427 428 5.715921 TCCCTCATTCCACAGTCTATATGA 58.284 41.667 0.00 0.00 0.00 2.15
428 429 6.326161 TCCCTCATTCCACAGTCTATATGAT 58.674 40.000 0.00 0.00 0.00 2.45
429 430 6.789457 TCCCTCATTCCACAGTCTATATGATT 59.211 38.462 0.00 0.00 0.00 2.57
430 431 7.293299 TCCCTCATTCCACAGTCTATATGATTT 59.707 37.037 0.00 0.00 0.00 2.17
431 432 8.597167 CCCTCATTCCACAGTCTATATGATTTA 58.403 37.037 0.00 0.00 0.00 1.40
468 469 9.796120 TTCAAAACACCTTACTTTTGTGAATAG 57.204 29.630 0.00 0.00 38.17 1.73
469 470 9.179909 TCAAAACACCTTACTTTTGTGAATAGA 57.820 29.630 0.00 0.00 38.17 1.98
470 471 9.450807 CAAAACACCTTACTTTTGTGAATAGAG 57.549 33.333 0.00 0.00 34.16 2.43
471 472 7.745620 AACACCTTACTTTTGTGAATAGAGG 57.254 36.000 0.00 0.00 34.18 3.69
472 473 6.238648 ACACCTTACTTTTGTGAATAGAGGG 58.761 40.000 0.00 0.00 34.18 4.30
473 474 6.043938 ACACCTTACTTTTGTGAATAGAGGGA 59.956 38.462 0.00 0.00 34.18 4.20
474 475 6.595716 CACCTTACTTTTGTGAATAGAGGGAG 59.404 42.308 0.00 0.00 31.66 4.30
475 476 6.272558 ACCTTACTTTTGTGAATAGAGGGAGT 59.727 38.462 0.00 0.00 0.00 3.85
476 477 7.456902 ACCTTACTTTTGTGAATAGAGGGAGTA 59.543 37.037 0.00 0.00 0.00 2.59
477 478 7.764901 CCTTACTTTTGTGAATAGAGGGAGTAC 59.235 40.741 0.00 0.00 0.00 2.73
478 479 6.681729 ACTTTTGTGAATAGAGGGAGTACA 57.318 37.500 0.00 0.00 0.00 2.90
479 480 6.465084 ACTTTTGTGAATAGAGGGAGTACAC 58.535 40.000 0.00 0.00 0.00 2.90
480 481 6.042781 ACTTTTGTGAATAGAGGGAGTACACA 59.957 38.462 0.00 0.00 35.51 3.72
481 482 5.661056 TTGTGAATAGAGGGAGTACACAG 57.339 43.478 0.00 0.00 37.89 3.66
482 483 4.023980 TGTGAATAGAGGGAGTACACAGG 58.976 47.826 0.00 0.00 33.81 4.00
483 484 3.385111 GTGAATAGAGGGAGTACACAGGG 59.615 52.174 0.00 0.00 0.00 4.45
484 485 2.089600 ATAGAGGGAGTACACAGGGC 57.910 55.000 0.00 0.00 0.00 5.19
485 486 0.032416 TAGAGGGAGTACACAGGGCC 60.032 60.000 0.00 0.00 0.00 5.80
486 487 1.306226 GAGGGAGTACACAGGGCCT 60.306 63.158 0.00 0.00 0.00 5.19
487 488 1.306226 AGGGAGTACACAGGGCCTC 60.306 63.158 0.95 0.00 0.00 4.70
488 489 1.612442 GGGAGTACACAGGGCCTCA 60.612 63.158 0.95 0.00 0.00 3.86
489 490 0.983378 GGGAGTACACAGGGCCTCAT 60.983 60.000 0.95 0.00 0.00 2.90
490 491 0.912486 GGAGTACACAGGGCCTCATT 59.088 55.000 0.95 0.00 0.00 2.57
491 492 1.282157 GGAGTACACAGGGCCTCATTT 59.718 52.381 0.95 0.00 0.00 2.32
492 493 2.290960 GGAGTACACAGGGCCTCATTTT 60.291 50.000 0.95 0.00 0.00 1.82
493 494 3.421844 GAGTACACAGGGCCTCATTTTT 58.578 45.455 0.95 0.00 0.00 1.94
509 510 2.484742 TTTTTAAGCCCGAGGGTCTC 57.515 50.000 10.26 0.00 37.65 3.36
510 511 0.616891 TTTTAAGCCCGAGGGTCTCC 59.383 55.000 10.26 0.00 37.65 3.71
511 512 1.610554 TTTAAGCCCGAGGGTCTCCG 61.611 60.000 10.26 0.00 38.33 4.63
517 518 3.522731 CGAGGGTCTCCGCTCCAG 61.523 72.222 1.78 0.00 45.33 3.86
518 519 2.043852 GAGGGTCTCCGCTCCAGA 60.044 66.667 0.00 0.00 43.07 3.86
519 520 1.682684 GAGGGTCTCCGCTCCAGAA 60.683 63.158 0.00 0.00 43.07 3.02
520 521 1.229209 AGGGTCTCCGCTCCAGAAA 60.229 57.895 0.00 0.00 38.33 2.52
521 522 0.836400 AGGGTCTCCGCTCCAGAAAA 60.836 55.000 0.00 0.00 38.33 2.29
522 523 0.036306 GGGTCTCCGCTCCAGAAAAA 59.964 55.000 0.00 0.00 0.00 1.94
523 524 1.340114 GGGTCTCCGCTCCAGAAAAAT 60.340 52.381 0.00 0.00 0.00 1.82
524 525 1.740025 GGTCTCCGCTCCAGAAAAATG 59.260 52.381 0.00 0.00 0.00 2.32
525 526 2.427506 GTCTCCGCTCCAGAAAAATGT 58.572 47.619 0.00 0.00 0.00 2.71
526 527 3.596214 GTCTCCGCTCCAGAAAAATGTA 58.404 45.455 0.00 0.00 0.00 2.29
527 528 3.371285 GTCTCCGCTCCAGAAAAATGTAC 59.629 47.826 0.00 0.00 0.00 2.90
528 529 3.260884 TCTCCGCTCCAGAAAAATGTACT 59.739 43.478 0.00 0.00 0.00 2.73
529 530 4.464951 TCTCCGCTCCAGAAAAATGTACTA 59.535 41.667 0.00 0.00 0.00 1.82
556 557 1.185315 ATGGCATGGCACCTAACAAC 58.815 50.000 25.84 0.00 0.00 3.32
572 573 6.044637 ACCTAACAACACCCAAGTTTATCCTA 59.955 38.462 0.00 0.00 0.00 2.94
607 608 2.440980 GGATTGGGCAGCCAGGAC 60.441 66.667 15.19 1.41 0.00 3.85
624 625 0.669625 GACGAACCCACCAGTGTAGC 60.670 60.000 0.00 0.00 0.00 3.58
634 635 1.663388 CAGTGTAGCGGCGTGACAA 60.663 57.895 15.73 0.84 0.00 3.18
636 637 1.663702 GTGTAGCGGCGTGACAACT 60.664 57.895 15.73 2.91 0.00 3.16
712 713 3.544244 GCTGCGATCGTACCAGAATTTTC 60.544 47.826 20.85 3.02 0.00 2.29
724 725 3.313526 CCAGAATTTTCGCCCTAGTCATG 59.686 47.826 0.00 0.00 0.00 3.07
787 797 2.435059 GTGAGGCTCGGCTCAACC 60.435 66.667 22.43 9.55 0.00 3.77
810 820 3.197790 CAGCTCGGGTGGCATTCG 61.198 66.667 6.17 6.17 0.00 3.34
869 879 1.444917 GCGCCCCCTCTTTAAATCCG 61.445 60.000 0.00 0.00 0.00 4.18
875 885 2.289565 CCCTCTTTAAATCCGCCTCAC 58.710 52.381 0.00 0.00 0.00 3.51
1563 1599 4.742201 GACGCGCTCCTGCTGGAA 62.742 66.667 13.89 0.00 42.66 3.53
1566 1602 2.616330 CGCGCTCCTGCTGGAAAAA 61.616 57.895 13.89 0.00 42.66 1.94
2386 2437 2.975799 CCAAACCGTCCACCACCG 60.976 66.667 0.00 0.00 0.00 4.94
2424 2475 0.458716 CGACGAAGAAGAAGGCCTCC 60.459 60.000 5.23 0.00 0.00 4.30
2455 2514 2.807045 CGTCGTGAGCAGAGCACC 60.807 66.667 0.00 0.00 32.74 5.01
2456 2515 2.433318 GTCGTGAGCAGAGCACCC 60.433 66.667 0.00 0.00 32.74 4.61
2457 2516 3.695606 TCGTGAGCAGAGCACCCC 61.696 66.667 0.00 0.00 32.74 4.95
2459 2518 4.767255 GTGAGCAGAGCACCCCGG 62.767 72.222 0.00 0.00 0.00 5.73
2478 2537 4.598894 CCCAGCCGGCGAGAGATG 62.599 72.222 23.20 12.82 0.00 2.90
2736 2803 3.214328 TGAAGTCACTGGCTTCTTTTCC 58.786 45.455 21.25 0.00 41.94 3.13
2737 2804 3.214328 GAAGTCACTGGCTTCTTTTCCA 58.786 45.455 15.00 0.00 39.25 3.53
2738 2805 3.297134 AGTCACTGGCTTCTTTTCCAA 57.703 42.857 0.00 0.00 30.98 3.53
2739 2806 3.837355 AGTCACTGGCTTCTTTTCCAAT 58.163 40.909 0.00 0.00 30.98 3.16
2740 2807 3.823304 AGTCACTGGCTTCTTTTCCAATC 59.177 43.478 0.00 0.00 30.98 2.67
2741 2808 3.569701 GTCACTGGCTTCTTTTCCAATCA 59.430 43.478 0.00 0.00 30.98 2.57
2742 2809 4.037923 GTCACTGGCTTCTTTTCCAATCAA 59.962 41.667 0.00 0.00 30.98 2.57
2743 2810 4.648762 TCACTGGCTTCTTTTCCAATCAAA 59.351 37.500 0.00 0.00 30.98 2.69
2744 2811 5.128499 TCACTGGCTTCTTTTCCAATCAAAA 59.872 36.000 0.00 0.00 30.98 2.44
2745 2812 5.993441 CACTGGCTTCTTTTCCAATCAAAAT 59.007 36.000 0.00 0.00 30.98 1.82
2746 2813 6.146673 CACTGGCTTCTTTTCCAATCAAAATC 59.853 38.462 0.00 0.00 30.98 2.17
2747 2814 5.229423 TGGCTTCTTTTCCAATCAAAATCG 58.771 37.500 0.00 0.00 0.00 3.34
2748 2815 5.221422 TGGCTTCTTTTCCAATCAAAATCGT 60.221 36.000 0.00 0.00 0.00 3.73
2749 2816 5.696270 GGCTTCTTTTCCAATCAAAATCGTT 59.304 36.000 0.00 0.00 0.00 3.85
2750 2817 6.202762 GGCTTCTTTTCCAATCAAAATCGTTT 59.797 34.615 0.00 0.00 0.00 3.60
2751 2818 7.283633 GCTTCTTTTCCAATCAAAATCGTTTC 58.716 34.615 0.00 0.00 0.00 2.78
2752 2819 7.169813 GCTTCTTTTCCAATCAAAATCGTTTCT 59.830 33.333 0.00 0.00 0.00 2.52
2753 2820 8.940768 TTCTTTTCCAATCAAAATCGTTTCTT 57.059 26.923 0.00 0.00 0.00 2.52
2754 2821 8.940768 TCTTTTCCAATCAAAATCGTTTCTTT 57.059 26.923 0.00 0.00 0.00 2.52
2755 2822 9.377312 TCTTTTCCAATCAAAATCGTTTCTTTT 57.623 25.926 0.00 0.00 0.00 2.27
2756 2823 9.636965 CTTTTCCAATCAAAATCGTTTCTTTTC 57.363 29.630 0.00 0.00 0.00 2.29
2797 2885 3.088532 TGTCACCTGTTTTGTTCTTGCT 58.911 40.909 0.00 0.00 0.00 3.91
2812 2900 3.177920 GCTCGTGTGCTCTGCTCG 61.178 66.667 0.00 0.00 0.00 5.03
2841 2929 1.220529 ACCATATCAAGACGCATGCG 58.779 50.000 36.79 36.79 46.03 4.73
2855 2943 4.980805 TGCGTTGCTGGACGGACC 62.981 66.667 9.25 0.00 42.98 4.46
2858 2946 3.998672 GTTGCTGGACGGACCCGA 61.999 66.667 16.07 0.00 42.83 5.14
2863 2964 4.385740 TGGACGGACCCGATCCCA 62.386 66.667 16.07 14.88 46.04 4.37
2937 3038 1.290955 CTGTACGCTTCCCGAACCA 59.709 57.895 0.00 0.00 41.02 3.67
2956 3061 2.219458 CATGATCGCAGAGCTCCAAAT 58.781 47.619 10.93 0.00 46.78 2.32
2972 3077 5.491982 CTCCAAATCCAAGCTGTACTACTT 58.508 41.667 0.00 0.00 0.00 2.24
2975 3080 5.882557 CCAAATCCAAGCTGTACTACTTCAT 59.117 40.000 0.00 0.00 0.00 2.57
3073 3178 2.029020 TGGTTCATCGTCTGGTTCTGAG 60.029 50.000 0.00 0.00 0.00 3.35
3097 3202 1.272781 CTCTGATTGAACGGCGAGTC 58.727 55.000 16.62 11.34 0.00 3.36
3254 3361 3.005578 TGCGAATGAGATGAGATGAGGAG 59.994 47.826 0.00 0.00 0.00 3.69
3256 3363 3.825585 CGAATGAGATGAGATGAGGAGGA 59.174 47.826 0.00 0.00 0.00 3.71
3311 3420 3.726517 CGGCCACTGTTTGCGAGG 61.727 66.667 2.24 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.593786 TGCCCCATGTAGACATATCTAGAT 58.406 41.667 10.73 10.73 41.06 1.98
4 5 5.010708 TGCCCCATGTAGACATATCTAGA 57.989 43.478 0.00 0.00 38.14 2.43
6 7 6.025539 AGATTGCCCCATGTAGACATATCTA 58.974 40.000 0.00 0.00 36.29 1.98
7 8 4.848660 AGATTGCCCCATGTAGACATATCT 59.151 41.667 0.00 0.00 39.15 1.98
8 9 5.171339 AGATTGCCCCATGTAGACATATC 57.829 43.478 0.00 0.00 34.26 1.63
9 10 6.025539 TCTAGATTGCCCCATGTAGACATAT 58.974 40.000 0.00 0.00 34.26 1.78
10 11 5.402630 TCTAGATTGCCCCATGTAGACATA 58.597 41.667 0.00 0.00 34.26 2.29
11 12 4.234550 TCTAGATTGCCCCATGTAGACAT 58.765 43.478 0.00 0.00 36.96 3.06
12 13 3.653164 TCTAGATTGCCCCATGTAGACA 58.347 45.455 0.00 0.00 0.00 3.41
13 14 4.284490 TCATCTAGATTGCCCCATGTAGAC 59.716 45.833 1.33 0.00 0.00 2.59
14 15 4.492646 TCATCTAGATTGCCCCATGTAGA 58.507 43.478 1.33 0.00 0.00 2.59
15 16 4.897509 TCATCTAGATTGCCCCATGTAG 57.102 45.455 1.33 0.00 0.00 2.74
16 17 4.411869 TGTTCATCTAGATTGCCCCATGTA 59.588 41.667 1.33 0.00 0.00 2.29
17 18 3.202818 TGTTCATCTAGATTGCCCCATGT 59.797 43.478 1.33 0.00 0.00 3.21
18 19 3.824133 TGTTCATCTAGATTGCCCCATG 58.176 45.455 1.33 0.00 0.00 3.66
19 20 4.079558 AGTTGTTCATCTAGATTGCCCCAT 60.080 41.667 1.33 0.00 0.00 4.00
20 21 3.266772 AGTTGTTCATCTAGATTGCCCCA 59.733 43.478 1.33 0.00 0.00 4.96
21 22 3.891049 AGTTGTTCATCTAGATTGCCCC 58.109 45.455 1.33 0.00 0.00 5.80
22 23 6.349300 TCTAAGTTGTTCATCTAGATTGCCC 58.651 40.000 1.33 0.00 0.00 5.36
23 24 7.334421 TGTTCTAAGTTGTTCATCTAGATTGCC 59.666 37.037 1.33 0.00 0.00 4.52
24 25 8.171840 GTGTTCTAAGTTGTTCATCTAGATTGC 58.828 37.037 1.33 0.00 0.00 3.56
25 26 8.376203 CGTGTTCTAAGTTGTTCATCTAGATTG 58.624 37.037 1.33 0.00 0.00 2.67
26 27 7.545965 CCGTGTTCTAAGTTGTTCATCTAGATT 59.454 37.037 1.33 0.00 0.00 2.40
27 28 7.036220 CCGTGTTCTAAGTTGTTCATCTAGAT 58.964 38.462 0.00 0.00 0.00 1.98
28 29 6.015688 ACCGTGTTCTAAGTTGTTCATCTAGA 60.016 38.462 0.00 0.00 0.00 2.43
29 30 6.089551 CACCGTGTTCTAAGTTGTTCATCTAG 59.910 42.308 0.00 0.00 0.00 2.43
30 31 5.924254 CACCGTGTTCTAAGTTGTTCATCTA 59.076 40.000 0.00 0.00 0.00 1.98
31 32 4.750098 CACCGTGTTCTAAGTTGTTCATCT 59.250 41.667 0.00 0.00 0.00 2.90
32 33 4.084013 CCACCGTGTTCTAAGTTGTTCATC 60.084 45.833 0.00 0.00 0.00 2.92
33 34 3.813166 CCACCGTGTTCTAAGTTGTTCAT 59.187 43.478 0.00 0.00 0.00 2.57
34 35 3.199677 CCACCGTGTTCTAAGTTGTTCA 58.800 45.455 0.00 0.00 0.00 3.18
35 36 2.032290 GCCACCGTGTTCTAAGTTGTTC 60.032 50.000 0.00 0.00 0.00 3.18
36 37 1.944709 GCCACCGTGTTCTAAGTTGTT 59.055 47.619 0.00 0.00 0.00 2.83
37 38 1.134340 TGCCACCGTGTTCTAAGTTGT 60.134 47.619 0.00 0.00 0.00 3.32
38 39 1.263217 GTGCCACCGTGTTCTAAGTTG 59.737 52.381 0.00 0.00 0.00 3.16
39 40 1.589803 GTGCCACCGTGTTCTAAGTT 58.410 50.000 0.00 0.00 0.00 2.66
40 41 0.250166 GGTGCCACCGTGTTCTAAGT 60.250 55.000 0.00 0.00 0.00 2.24
41 42 0.953960 GGGTGCCACCGTGTTCTAAG 60.954 60.000 7.99 0.00 39.83 2.18
42 43 1.071814 GGGTGCCACCGTGTTCTAA 59.928 57.895 7.99 0.00 39.83 2.10
43 44 1.697082 TTGGGTGCCACCGTGTTCTA 61.697 55.000 7.99 0.00 39.83 2.10
44 45 2.958578 CTTGGGTGCCACCGTGTTCT 62.959 60.000 7.99 0.00 39.83 3.01
45 46 2.517402 TTGGGTGCCACCGTGTTC 60.517 61.111 7.99 0.00 39.83 3.18
46 47 2.518349 CTTGGGTGCCACCGTGTT 60.518 61.111 7.99 0.00 39.83 3.32
47 48 3.767630 GACTTGGGTGCCACCGTGT 62.768 63.158 7.99 6.27 39.83 4.49
48 49 2.958578 AAGACTTGGGTGCCACCGTG 62.959 60.000 7.99 2.85 39.83 4.94
49 50 2.676163 GAAGACTTGGGTGCCACCGT 62.676 60.000 7.99 0.00 39.83 4.83
50 51 1.966451 GAAGACTTGGGTGCCACCG 60.966 63.158 7.99 0.00 39.83 4.94
51 52 1.603739 GGAAGACTTGGGTGCCACC 60.604 63.158 4.93 4.93 37.60 4.61
52 53 0.251341 ATGGAAGACTTGGGTGCCAC 60.251 55.000 0.00 0.00 30.78 5.01
53 54 1.367346 TATGGAAGACTTGGGTGCCA 58.633 50.000 0.00 0.00 0.00 4.92
54 55 2.026262 TCTTATGGAAGACTTGGGTGCC 60.026 50.000 0.00 0.00 36.75 5.01
55 56 3.350219 TCTTATGGAAGACTTGGGTGC 57.650 47.619 0.00 0.00 36.75 5.01
56 57 4.651778 TGTTCTTATGGAAGACTTGGGTG 58.348 43.478 0.00 0.00 41.52 4.61
57 58 4.993705 TGTTCTTATGGAAGACTTGGGT 57.006 40.909 0.00 0.00 41.52 4.51
58 59 5.945784 TCAATGTTCTTATGGAAGACTTGGG 59.054 40.000 0.00 0.00 41.52 4.12
59 60 7.391554 TCTTCAATGTTCTTATGGAAGACTTGG 59.608 37.037 0.00 0.00 40.51 3.61
60 61 8.327941 TCTTCAATGTTCTTATGGAAGACTTG 57.672 34.615 0.00 0.00 40.51 3.16
64 65 6.697395 TCGTCTTCAATGTTCTTATGGAAGA 58.303 36.000 0.00 0.00 42.21 2.87
65 66 6.456181 GCTCGTCTTCAATGTTCTTATGGAAG 60.456 42.308 0.00 0.00 38.79 3.46
66 67 5.351465 GCTCGTCTTCAATGTTCTTATGGAA 59.649 40.000 0.00 0.00 0.00 3.53
67 68 4.870426 GCTCGTCTTCAATGTTCTTATGGA 59.130 41.667 0.00 0.00 0.00 3.41
68 69 4.631377 TGCTCGTCTTCAATGTTCTTATGG 59.369 41.667 0.00 0.00 0.00 2.74
69 70 5.726138 GCTGCTCGTCTTCAATGTTCTTATG 60.726 44.000 0.00 0.00 0.00 1.90
70 71 4.331168 GCTGCTCGTCTTCAATGTTCTTAT 59.669 41.667 0.00 0.00 0.00 1.73
71 72 3.679980 GCTGCTCGTCTTCAATGTTCTTA 59.320 43.478 0.00 0.00 0.00 2.10
72 73 2.481952 GCTGCTCGTCTTCAATGTTCTT 59.518 45.455 0.00 0.00 0.00 2.52
73 74 2.072298 GCTGCTCGTCTTCAATGTTCT 58.928 47.619 0.00 0.00 0.00 3.01
74 75 1.201855 CGCTGCTCGTCTTCAATGTTC 60.202 52.381 0.00 0.00 0.00 3.18
75 76 0.792640 CGCTGCTCGTCTTCAATGTT 59.207 50.000 0.00 0.00 0.00 2.71
76 77 0.038251 TCGCTGCTCGTCTTCAATGT 60.038 50.000 0.00 0.00 39.67 2.71
77 78 0.644331 CTCGCTGCTCGTCTTCAATG 59.356 55.000 0.00 0.00 39.67 2.82
78 79 0.528017 TCTCGCTGCTCGTCTTCAAT 59.472 50.000 0.00 0.00 39.67 2.57
79 80 0.387367 GTCTCGCTGCTCGTCTTCAA 60.387 55.000 0.00 0.00 39.67 2.69
80 81 1.210413 GTCTCGCTGCTCGTCTTCA 59.790 57.895 0.00 0.00 39.67 3.02
81 82 0.387367 TTGTCTCGCTGCTCGTCTTC 60.387 55.000 0.00 0.00 39.67 2.87
82 83 0.664767 GTTGTCTCGCTGCTCGTCTT 60.665 55.000 0.00 0.00 39.67 3.01
83 84 1.081108 GTTGTCTCGCTGCTCGTCT 60.081 57.895 0.00 0.00 39.67 4.18
84 85 2.089349 GGTTGTCTCGCTGCTCGTC 61.089 63.158 0.00 0.00 39.67 4.20
85 86 2.049063 GGTTGTCTCGCTGCTCGT 60.049 61.111 0.00 0.00 39.67 4.18
86 87 2.811317 GGGTTGTCTCGCTGCTCG 60.811 66.667 0.00 0.00 40.15 5.03
87 88 2.435059 GGGGTTGTCTCGCTGCTC 60.435 66.667 0.00 0.00 0.00 4.26
88 89 2.925170 AGGGGTTGTCTCGCTGCT 60.925 61.111 0.00 0.00 0.00 4.24
89 90 2.435059 GAGGGGTTGTCTCGCTGC 60.435 66.667 0.00 0.00 0.00 5.25
90 91 2.125912 CGAGGGGTTGTCTCGCTG 60.126 66.667 0.58 0.00 45.67 5.18
94 95 1.477295 CCTACTTCGAGGGGTTGTCTC 59.523 57.143 0.00 0.00 32.39 3.36
95 96 1.076677 TCCTACTTCGAGGGGTTGTCT 59.923 52.381 0.00 0.00 37.20 3.41
96 97 1.553706 TCCTACTTCGAGGGGTTGTC 58.446 55.000 0.00 0.00 37.20 3.18
97 98 2.249309 ATCCTACTTCGAGGGGTTGT 57.751 50.000 0.00 0.00 37.20 3.32
98 99 3.705072 ACTTATCCTACTTCGAGGGGTTG 59.295 47.826 0.00 0.00 37.20 3.77
99 100 3.991683 ACTTATCCTACTTCGAGGGGTT 58.008 45.455 0.00 0.00 37.20 4.11
100 101 3.684408 ACTTATCCTACTTCGAGGGGT 57.316 47.619 0.00 0.00 37.20 4.95
101 102 3.825585 GGTACTTATCCTACTTCGAGGGG 59.174 52.174 0.00 0.00 37.20 4.79
102 103 4.727677 AGGTACTTATCCTACTTCGAGGG 58.272 47.826 0.00 0.00 33.26 4.30
103 104 4.451774 CGAGGTACTTATCCTACTTCGAGG 59.548 50.000 4.59 0.00 42.98 4.63
104 105 5.177327 GTCGAGGTACTTATCCTACTTCGAG 59.823 48.000 11.60 0.00 46.83 4.04
105 106 5.053145 GTCGAGGTACTTATCCTACTTCGA 58.947 45.833 8.25 8.25 45.21 3.71
106 107 4.213059 GGTCGAGGTACTTATCCTACTTCG 59.787 50.000 4.29 4.29 41.55 3.79
107 108 5.375773 AGGTCGAGGTACTTATCCTACTTC 58.624 45.833 0.00 0.00 41.55 3.01
108 109 5.385628 AGGTCGAGGTACTTATCCTACTT 57.614 43.478 0.00 0.00 41.55 2.24
109 110 6.501453 AGATAGGTCGAGGTACTTATCCTACT 59.499 42.308 0.00 0.00 41.55 2.57
110 111 6.594937 CAGATAGGTCGAGGTACTTATCCTAC 59.405 46.154 0.00 0.00 41.55 3.18
111 112 6.271857 ACAGATAGGTCGAGGTACTTATCCTA 59.728 42.308 0.00 0.00 41.55 2.94
112 113 5.073417 ACAGATAGGTCGAGGTACTTATCCT 59.927 44.000 0.00 0.00 41.55 3.24
113 114 5.315348 ACAGATAGGTCGAGGTACTTATCC 58.685 45.833 0.00 0.00 41.55 2.59
114 115 7.976135 TTACAGATAGGTCGAGGTACTTATC 57.024 40.000 0.00 0.00 41.55 1.75
115 116 8.628280 GTTTTACAGATAGGTCGAGGTACTTAT 58.372 37.037 0.00 0.00 41.55 1.73
116 117 7.067494 GGTTTTACAGATAGGTCGAGGTACTTA 59.933 40.741 0.00 0.00 41.55 2.24
117 118 6.127507 GGTTTTACAGATAGGTCGAGGTACTT 60.128 42.308 0.00 0.00 41.55 2.24
119 120 5.126061 TGGTTTTACAGATAGGTCGAGGTAC 59.874 44.000 0.00 0.00 0.00 3.34
120 121 5.126061 GTGGTTTTACAGATAGGTCGAGGTA 59.874 44.000 0.00 0.00 0.00 3.08
121 122 4.081807 GTGGTTTTACAGATAGGTCGAGGT 60.082 45.833 0.00 0.00 0.00 3.85
122 123 4.430908 GTGGTTTTACAGATAGGTCGAGG 58.569 47.826 0.00 0.00 0.00 4.63
123 124 4.430908 GGTGGTTTTACAGATAGGTCGAG 58.569 47.826 0.00 0.00 0.00 4.04
124 125 3.119388 CGGTGGTTTTACAGATAGGTCGA 60.119 47.826 0.00 0.00 0.00 4.20
125 126 3.184541 CGGTGGTTTTACAGATAGGTCG 58.815 50.000 0.00 0.00 0.00 4.79
126 127 3.528532 CCGGTGGTTTTACAGATAGGTC 58.471 50.000 0.00 0.00 0.00 3.85
127 128 2.355412 GCCGGTGGTTTTACAGATAGGT 60.355 50.000 1.90 0.00 0.00 3.08
128 129 2.285977 GCCGGTGGTTTTACAGATAGG 58.714 52.381 1.90 0.00 0.00 2.57
129 130 1.931172 CGCCGGTGGTTTTACAGATAG 59.069 52.381 7.26 0.00 0.00 2.08
130 131 1.405797 CCGCCGGTGGTTTTACAGATA 60.406 52.381 26.60 0.00 0.00 1.98
131 132 0.675522 CCGCCGGTGGTTTTACAGAT 60.676 55.000 26.60 0.00 0.00 2.90
132 133 1.301874 CCGCCGGTGGTTTTACAGA 60.302 57.895 26.60 0.00 0.00 3.41
133 134 2.329614 CCCGCCGGTGGTTTTACAG 61.330 63.158 31.53 11.48 0.00 2.74
134 135 2.281622 CCCGCCGGTGGTTTTACA 60.282 61.111 31.53 0.00 0.00 2.41
135 136 3.740397 GCCCGCCGGTGGTTTTAC 61.740 66.667 31.53 12.31 0.00 2.01
147 148 4.759205 ATGGACTTTGGGGCCCGC 62.759 66.667 19.83 9.75 44.39 6.13
148 149 2.755469 CATGGACTTTGGGGCCCG 60.755 66.667 19.83 6.19 44.39 6.13
149 150 1.682344 GACATGGACTTTGGGGCCC 60.682 63.158 18.17 18.17 44.39 5.80
150 151 1.682344 GGACATGGACTTTGGGGCC 60.682 63.158 0.00 0.00 45.52 5.80
151 152 1.076549 TGGACATGGACTTTGGGGC 59.923 57.895 0.00 0.00 0.00 5.80
152 153 0.960364 CGTGGACATGGACTTTGGGG 60.960 60.000 0.00 0.00 0.00 4.96
153 154 0.036164 TCGTGGACATGGACTTTGGG 59.964 55.000 0.00 0.00 0.00 4.12
154 155 1.535462 GTTCGTGGACATGGACTTTGG 59.465 52.381 0.00 0.00 0.00 3.28
155 156 1.535462 GGTTCGTGGACATGGACTTTG 59.465 52.381 0.00 0.00 0.00 2.77
156 157 1.142060 TGGTTCGTGGACATGGACTTT 59.858 47.619 0.00 0.00 0.00 2.66
157 158 0.762418 TGGTTCGTGGACATGGACTT 59.238 50.000 0.00 0.00 0.00 3.01
158 159 0.762418 TTGGTTCGTGGACATGGACT 59.238 50.000 0.00 0.00 0.00 3.85
159 160 0.872388 GTTGGTTCGTGGACATGGAC 59.128 55.000 0.00 0.00 0.00 4.02
160 161 0.470341 TGTTGGTTCGTGGACATGGA 59.530 50.000 0.00 0.00 0.00 3.41
161 162 0.874390 CTGTTGGTTCGTGGACATGG 59.126 55.000 0.00 0.00 0.00 3.66
162 163 1.593196 ACTGTTGGTTCGTGGACATG 58.407 50.000 0.00 0.00 0.00 3.21
163 164 3.695830 ATACTGTTGGTTCGTGGACAT 57.304 42.857 0.00 0.00 0.00 3.06
164 165 3.135225 CAATACTGTTGGTTCGTGGACA 58.865 45.455 0.00 0.00 0.00 4.02
165 166 2.482721 CCAATACTGTTGGTTCGTGGAC 59.517 50.000 0.00 0.00 34.92 4.02
166 167 2.551287 CCCAATACTGTTGGTTCGTGGA 60.551 50.000 4.04 0.00 37.88 4.02
167 168 1.810151 CCCAATACTGTTGGTTCGTGG 59.190 52.381 4.04 0.00 37.88 4.94
168 169 1.810151 CCCCAATACTGTTGGTTCGTG 59.190 52.381 4.04 0.00 37.88 4.35
169 170 1.271707 CCCCCAATACTGTTGGTTCGT 60.272 52.381 4.04 0.00 37.88 3.85
170 171 1.271707 ACCCCCAATACTGTTGGTTCG 60.272 52.381 4.04 0.00 37.88 3.95
171 172 2.597578 ACCCCCAATACTGTTGGTTC 57.402 50.000 4.04 0.00 37.88 3.62
172 173 3.816480 GCTTACCCCCAATACTGTTGGTT 60.816 47.826 4.04 0.00 37.88 3.67
173 174 2.291346 GCTTACCCCCAATACTGTTGGT 60.291 50.000 4.04 0.00 37.88 3.67
174 175 2.025321 AGCTTACCCCCAATACTGTTGG 60.025 50.000 0.00 0.00 39.25 3.77
175 176 3.016736 CAGCTTACCCCCAATACTGTTG 58.983 50.000 0.00 0.00 0.00 3.33
176 177 2.025321 CCAGCTTACCCCCAATACTGTT 60.025 50.000 0.00 0.00 0.00 3.16
177 178 1.564348 CCAGCTTACCCCCAATACTGT 59.436 52.381 0.00 0.00 0.00 3.55
178 179 1.843851 TCCAGCTTACCCCCAATACTG 59.156 52.381 0.00 0.00 0.00 2.74
179 180 2.280308 TCCAGCTTACCCCCAATACT 57.720 50.000 0.00 0.00 0.00 2.12
180 181 3.595190 AATCCAGCTTACCCCCAATAC 57.405 47.619 0.00 0.00 0.00 1.89
181 182 3.396611 GGTAATCCAGCTTACCCCCAATA 59.603 47.826 1.39 0.00 43.23 1.90
182 183 2.177016 GGTAATCCAGCTTACCCCCAAT 59.823 50.000 1.39 0.00 43.23 3.16
183 184 1.567175 GGTAATCCAGCTTACCCCCAA 59.433 52.381 1.39 0.00 43.23 4.12
184 185 1.218844 GGTAATCCAGCTTACCCCCA 58.781 55.000 1.39 0.00 43.23 4.96
189 190 3.243201 GCAATGCAGGTAATCCAGCTTAC 60.243 47.826 0.00 0.00 44.88 2.34
190 191 2.951642 GCAATGCAGGTAATCCAGCTTA 59.048 45.455 0.00 0.00 44.88 3.09
191 192 1.753073 GCAATGCAGGTAATCCAGCTT 59.247 47.619 0.00 0.00 44.88 3.74
192 193 1.064166 AGCAATGCAGGTAATCCAGCT 60.064 47.619 8.35 0.00 44.88 4.24
193 194 1.396653 AGCAATGCAGGTAATCCAGC 58.603 50.000 8.35 0.00 44.86 4.85
194 195 2.360165 GGAAGCAATGCAGGTAATCCAG 59.640 50.000 8.35 0.00 35.89 3.86
195 196 2.378038 GGAAGCAATGCAGGTAATCCA 58.622 47.619 8.35 0.00 35.89 3.41
196 197 1.683385 GGGAAGCAATGCAGGTAATCC 59.317 52.381 8.35 4.96 0.00 3.01
197 198 2.099756 GTGGGAAGCAATGCAGGTAATC 59.900 50.000 8.35 0.00 0.00 1.75
198 199 2.102578 GTGGGAAGCAATGCAGGTAAT 58.897 47.619 8.35 0.00 0.00 1.89
199 200 1.202989 TGTGGGAAGCAATGCAGGTAA 60.203 47.619 8.35 0.00 0.00 2.85
200 201 0.403655 TGTGGGAAGCAATGCAGGTA 59.596 50.000 8.35 0.00 0.00 3.08
201 202 0.251922 ATGTGGGAAGCAATGCAGGT 60.252 50.000 8.35 0.00 0.00 4.00
202 203 1.766494 TATGTGGGAAGCAATGCAGG 58.234 50.000 8.35 0.00 0.00 4.85
203 204 2.953648 TCATATGTGGGAAGCAATGCAG 59.046 45.455 8.35 0.00 0.00 4.41
204 205 3.015675 TCATATGTGGGAAGCAATGCA 57.984 42.857 8.35 0.00 0.00 3.96
205 206 3.633525 TCTTCATATGTGGGAAGCAATGC 59.366 43.478 0.00 0.00 40.20 3.56
206 207 5.301045 ACATCTTCATATGTGGGAAGCAATG 59.699 40.000 1.90 3.11 40.20 2.82
207 208 5.452255 ACATCTTCATATGTGGGAAGCAAT 58.548 37.500 1.90 0.00 40.20 3.56
208 209 4.858850 ACATCTTCATATGTGGGAAGCAA 58.141 39.130 1.90 0.00 40.20 3.91
209 210 4.508551 ACATCTTCATATGTGGGAAGCA 57.491 40.909 1.90 0.00 40.20 3.91
210 211 4.641989 ACAACATCTTCATATGTGGGAAGC 59.358 41.667 1.90 0.00 39.98 3.86
211 212 7.716560 TCATACAACATCTTCATATGTGGGAAG 59.283 37.037 1.90 0.00 39.98 3.46
212 213 7.572814 TCATACAACATCTTCATATGTGGGAA 58.427 34.615 1.90 0.00 39.98 3.97
213 214 7.135591 TCATACAACATCTTCATATGTGGGA 57.864 36.000 1.90 0.53 39.98 4.37
214 215 7.282901 TGTTCATACAACATCTTCATATGTGGG 59.717 37.037 1.90 0.00 39.98 4.61
215 216 8.212317 TGTTCATACAACATCTTCATATGTGG 57.788 34.615 1.90 0.00 39.98 4.17
220 221 9.377312 TCGATTTGTTCATACAACATCTTCATA 57.623 29.630 0.00 0.00 43.66 2.15
221 222 8.267620 TCGATTTGTTCATACAACATCTTCAT 57.732 30.769 0.00 0.00 43.66 2.57
222 223 7.665561 TCGATTTGTTCATACAACATCTTCA 57.334 32.000 0.00 0.00 43.66 3.02
223 224 9.003112 CAATCGATTTGTTCATACAACATCTTC 57.997 33.333 8.21 0.00 43.66 2.87
224 225 7.485913 GCAATCGATTTGTTCATACAACATCTT 59.514 33.333 8.21 0.00 43.66 2.40
225 226 6.968904 GCAATCGATTTGTTCATACAACATCT 59.031 34.615 8.21 0.00 43.66 2.90
226 227 6.746822 TGCAATCGATTTGTTCATACAACATC 59.253 34.615 8.21 0.00 43.66 3.06
227 228 6.619744 TGCAATCGATTTGTTCATACAACAT 58.380 32.000 8.21 0.00 43.66 2.71
228 229 6.006759 TGCAATCGATTTGTTCATACAACA 57.993 33.333 8.21 0.00 43.66 3.33
229 230 6.033831 CCTTGCAATCGATTTGTTCATACAAC 59.966 38.462 8.21 0.00 43.66 3.32
230 231 6.092092 CCTTGCAATCGATTTGTTCATACAA 58.908 36.000 8.21 2.89 42.34 2.41
231 232 5.182950 ACCTTGCAATCGATTTGTTCATACA 59.817 36.000 8.21 0.00 37.65 2.29
232 233 5.512788 CACCTTGCAATCGATTTGTTCATAC 59.487 40.000 8.21 0.00 37.65 2.39
233 234 5.392919 CCACCTTGCAATCGATTTGTTCATA 60.393 40.000 8.21 0.00 37.65 2.15
234 235 4.487948 CACCTTGCAATCGATTTGTTCAT 58.512 39.130 8.21 0.00 37.65 2.57
235 236 3.305267 CCACCTTGCAATCGATTTGTTCA 60.305 43.478 8.21 1.68 37.65 3.18
236 237 3.244976 CCACCTTGCAATCGATTTGTTC 58.755 45.455 8.21 0.00 37.65 3.18
237 238 2.029110 CCCACCTTGCAATCGATTTGTT 60.029 45.455 8.21 0.00 37.65 2.83
238 239 1.545582 CCCACCTTGCAATCGATTTGT 59.454 47.619 8.21 0.00 37.65 2.83
239 240 1.135024 CCCCACCTTGCAATCGATTTG 60.135 52.381 8.21 3.03 38.43 2.32
240 241 1.185315 CCCCACCTTGCAATCGATTT 58.815 50.000 8.21 0.00 0.00 2.17
241 242 0.039618 ACCCCACCTTGCAATCGATT 59.960 50.000 4.39 4.39 0.00 3.34
242 243 0.039618 AACCCCACCTTGCAATCGAT 59.960 50.000 0.00 0.00 0.00 3.59
243 244 0.608035 GAACCCCACCTTGCAATCGA 60.608 55.000 0.00 0.00 0.00 3.59
244 245 0.893270 TGAACCCCACCTTGCAATCG 60.893 55.000 0.00 0.00 0.00 3.34
245 246 1.337118 TTGAACCCCACCTTGCAATC 58.663 50.000 0.00 0.00 0.00 2.67
246 247 1.693606 CTTTGAACCCCACCTTGCAAT 59.306 47.619 0.00 0.00 0.00 3.56
247 248 1.118838 CTTTGAACCCCACCTTGCAA 58.881 50.000 0.00 0.00 0.00 4.08
248 249 0.032615 ACTTTGAACCCCACCTTGCA 60.033 50.000 0.00 0.00 0.00 4.08
249 250 0.673985 GACTTTGAACCCCACCTTGC 59.326 55.000 0.00 0.00 0.00 4.01
250 251 2.065899 TGACTTTGAACCCCACCTTG 57.934 50.000 0.00 0.00 0.00 3.61
251 252 2.091333 ACATGACTTTGAACCCCACCTT 60.091 45.455 0.00 0.00 0.00 3.50
252 253 1.499007 ACATGACTTTGAACCCCACCT 59.501 47.619 0.00 0.00 0.00 4.00
253 254 1.995376 ACATGACTTTGAACCCCACC 58.005 50.000 0.00 0.00 0.00 4.61
254 255 3.694566 GGATACATGACTTTGAACCCCAC 59.305 47.826 0.00 0.00 0.00 4.61
255 256 3.332187 TGGATACATGACTTTGAACCCCA 59.668 43.478 0.00 0.00 46.17 4.96
256 257 3.963129 TGGATACATGACTTTGAACCCC 58.037 45.455 0.00 0.00 46.17 4.95
271 272 3.821600 TCTCTCTAATGGTCGCTGGATAC 59.178 47.826 0.00 0.00 0.00 2.24
272 273 4.075682 CTCTCTCTAATGGTCGCTGGATA 58.924 47.826 0.00 0.00 0.00 2.59
273 274 2.890311 CTCTCTCTAATGGTCGCTGGAT 59.110 50.000 0.00 0.00 0.00 3.41
274 275 2.302260 CTCTCTCTAATGGTCGCTGGA 58.698 52.381 0.00 0.00 0.00 3.86
275 276 1.269517 GCTCTCTCTAATGGTCGCTGG 60.270 57.143 0.00 0.00 0.00 4.85
276 277 1.406898 TGCTCTCTCTAATGGTCGCTG 59.593 52.381 0.00 0.00 0.00 5.18
277 278 1.769026 TGCTCTCTCTAATGGTCGCT 58.231 50.000 0.00 0.00 0.00 4.93
278 279 2.810439 ATGCTCTCTCTAATGGTCGC 57.190 50.000 0.00 0.00 0.00 5.19
279 280 6.535150 TGTAAAAATGCTCTCTCTAATGGTCG 59.465 38.462 0.00 0.00 0.00 4.79
280 281 7.464710 CGTGTAAAAATGCTCTCTCTAATGGTC 60.465 40.741 0.00 0.00 0.00 4.02
281 282 6.313905 CGTGTAAAAATGCTCTCTCTAATGGT 59.686 38.462 0.00 0.00 0.00 3.55
282 283 6.709643 CGTGTAAAAATGCTCTCTCTAATGG 58.290 40.000 0.00 0.00 0.00 3.16
283 284 6.188175 GCGTGTAAAAATGCTCTCTCTAATG 58.812 40.000 0.00 0.00 0.00 1.90
284 285 5.005779 CGCGTGTAAAAATGCTCTCTCTAAT 59.994 40.000 0.00 0.00 0.00 1.73
285 286 4.326278 CGCGTGTAAAAATGCTCTCTCTAA 59.674 41.667 0.00 0.00 0.00 2.10
286 287 3.857665 CGCGTGTAAAAATGCTCTCTCTA 59.142 43.478 0.00 0.00 0.00 2.43
287 288 2.668457 CGCGTGTAAAAATGCTCTCTCT 59.332 45.455 0.00 0.00 0.00 3.10
288 289 2.412089 ACGCGTGTAAAAATGCTCTCTC 59.588 45.455 12.93 0.00 0.00 3.20
289 290 2.157668 CACGCGTGTAAAAATGCTCTCT 59.842 45.455 30.50 0.00 0.00 3.10
290 291 2.495939 CACGCGTGTAAAAATGCTCTC 58.504 47.619 30.50 0.00 0.00 3.20
291 292 1.196808 CCACGCGTGTAAAAATGCTCT 59.803 47.619 34.81 0.00 0.00 4.09
292 293 1.069500 ACCACGCGTGTAAAAATGCTC 60.069 47.619 34.81 0.00 0.00 4.26
293 294 0.948678 ACCACGCGTGTAAAAATGCT 59.051 45.000 34.81 8.26 0.00 3.79
294 295 1.049251 CACCACGCGTGTAAAAATGC 58.951 50.000 34.81 0.00 37.73 3.56
295 296 1.680668 CCACCACGCGTGTAAAAATG 58.319 50.000 34.81 21.05 41.26 2.32
296 297 0.039888 GCCACCACGCGTGTAAAAAT 60.040 50.000 34.81 12.29 41.26 1.82
297 298 1.355916 GCCACCACGCGTGTAAAAA 59.644 52.632 34.81 0.00 41.26 1.94
298 299 1.167155 ATGCCACCACGCGTGTAAAA 61.167 50.000 34.81 18.12 41.26 1.52
299 300 0.320508 TATGCCACCACGCGTGTAAA 60.321 50.000 34.81 17.43 41.26 2.01
300 301 1.015085 GTATGCCACCACGCGTGTAA 61.015 55.000 34.81 17.08 41.26 2.41
301 302 1.446445 GTATGCCACCACGCGTGTA 60.446 57.895 34.81 18.43 41.26 2.90
302 303 2.740826 GTATGCCACCACGCGTGT 60.741 61.111 34.81 21.36 41.26 4.49
303 304 3.848830 CGTATGCCACCACGCGTG 61.849 66.667 31.77 31.77 42.62 5.34
304 305 3.982372 CTCGTATGCCACCACGCGT 62.982 63.158 5.58 5.58 38.05 6.01
305 306 3.254654 CTCGTATGCCACCACGCG 61.255 66.667 3.53 3.53 38.05 6.01
306 307 2.287457 TACCTCGTATGCCACCACGC 62.287 60.000 0.00 0.00 38.05 5.34
307 308 0.526954 GTACCTCGTATGCCACCACG 60.527 60.000 0.00 0.00 39.48 4.94
308 309 0.822164 AGTACCTCGTATGCCACCAC 59.178 55.000 0.00 0.00 0.00 4.16
309 310 1.108776 GAGTACCTCGTATGCCACCA 58.891 55.000 0.00 0.00 0.00 4.17
310 311 0.388294 GGAGTACCTCGTATGCCACC 59.612 60.000 0.00 0.00 0.00 4.61
311 312 0.388294 GGGAGTACCTCGTATGCCAC 59.612 60.000 0.00 0.00 35.85 5.01
312 313 2.816746 GGGAGTACCTCGTATGCCA 58.183 57.895 0.00 0.00 35.85 4.92
322 323 9.866798 CTTATATTTATAAACGGAGGGAGTACC 57.133 37.037 0.00 0.00 40.67 3.34
361 362 9.113838 GTGTTCATATACACCTCATTCAGAAAT 57.886 33.333 0.00 0.00 41.99 2.17
362 363 7.277760 CGTGTTCATATACACCTCATTCAGAAA 59.722 37.037 3.68 0.00 44.32 2.52
363 364 6.756542 CGTGTTCATATACACCTCATTCAGAA 59.243 38.462 3.68 0.00 44.32 3.02
364 365 6.127451 ACGTGTTCATATACACCTCATTCAGA 60.127 38.462 3.68 0.00 44.32 3.27
365 366 6.042777 ACGTGTTCATATACACCTCATTCAG 58.957 40.000 3.68 0.00 44.32 3.02
366 367 5.972935 ACGTGTTCATATACACCTCATTCA 58.027 37.500 3.68 0.00 44.32 2.57
367 368 6.903883 AACGTGTTCATATACACCTCATTC 57.096 37.500 3.68 0.00 44.32 2.67
368 369 7.681939 AAAACGTGTTCATATACACCTCATT 57.318 32.000 3.68 0.00 44.32 2.57
369 370 7.011109 GCTAAAACGTGTTCATATACACCTCAT 59.989 37.037 0.00 0.00 44.32 2.90
370 371 6.311935 GCTAAAACGTGTTCATATACACCTCA 59.688 38.462 0.00 0.00 44.32 3.86
371 372 6.507456 CGCTAAAACGTGTTCATATACACCTC 60.507 42.308 0.00 0.00 44.32 3.85
372 373 5.290158 CGCTAAAACGTGTTCATATACACCT 59.710 40.000 0.00 0.00 44.32 4.00
373 374 5.062558 ACGCTAAAACGTGTTCATATACACC 59.937 40.000 0.00 0.00 46.28 4.16
374 375 6.086319 ACGCTAAAACGTGTTCATATACAC 57.914 37.500 0.00 0.00 46.28 2.90
387 388 4.152759 TGAGGGAATAAACACGCTAAAACG 59.847 41.667 0.00 0.00 39.50 3.60
388 389 5.616488 TGAGGGAATAAACACGCTAAAAC 57.384 39.130 0.00 0.00 0.00 2.43
389 390 6.127842 GGAATGAGGGAATAAACACGCTAAAA 60.128 38.462 0.00 0.00 0.00 1.52
390 391 5.355910 GGAATGAGGGAATAAACACGCTAAA 59.644 40.000 0.00 0.00 0.00 1.85
391 392 4.879545 GGAATGAGGGAATAAACACGCTAA 59.120 41.667 0.00 0.00 0.00 3.09
392 393 4.080807 TGGAATGAGGGAATAAACACGCTA 60.081 41.667 0.00 0.00 0.00 4.26
393 394 3.279434 GGAATGAGGGAATAAACACGCT 58.721 45.455 0.00 0.00 0.00 5.07
394 395 3.013921 TGGAATGAGGGAATAAACACGC 58.986 45.455 0.00 0.00 0.00 5.34
395 396 4.006989 TGTGGAATGAGGGAATAAACACG 58.993 43.478 0.00 0.00 0.00 4.49
396 397 5.010282 ACTGTGGAATGAGGGAATAAACAC 58.990 41.667 0.00 0.00 0.00 3.32
397 398 5.014123 AGACTGTGGAATGAGGGAATAAACA 59.986 40.000 0.00 0.00 0.00 2.83
398 399 5.501156 AGACTGTGGAATGAGGGAATAAAC 58.499 41.667 0.00 0.00 0.00 2.01
399 400 5.779241 AGACTGTGGAATGAGGGAATAAA 57.221 39.130 0.00 0.00 0.00 1.40
400 401 8.597167 CATATAGACTGTGGAATGAGGGAATAA 58.403 37.037 0.00 0.00 0.00 1.40
401 402 7.955750 TCATATAGACTGTGGAATGAGGGAATA 59.044 37.037 0.00 0.00 0.00 1.75
402 403 6.789457 TCATATAGACTGTGGAATGAGGGAAT 59.211 38.462 0.00 0.00 0.00 3.01
403 404 6.143206 TCATATAGACTGTGGAATGAGGGAA 58.857 40.000 0.00 0.00 0.00 3.97
404 405 5.715921 TCATATAGACTGTGGAATGAGGGA 58.284 41.667 0.00 0.00 0.00 4.20
405 406 6.617782 ATCATATAGACTGTGGAATGAGGG 57.382 41.667 0.00 0.00 0.00 4.30
442 443 9.796120 CTATTCACAAAAGTAAGGTGTTTTGAA 57.204 29.630 13.05 0.79 43.42 2.69
443 444 9.179909 TCTATTCACAAAAGTAAGGTGTTTTGA 57.820 29.630 13.05 0.00 43.42 2.69
444 445 9.450807 CTCTATTCACAAAAGTAAGGTGTTTTG 57.549 33.333 6.10 6.10 45.29 2.44
445 446 8.630037 CCTCTATTCACAAAAGTAAGGTGTTTT 58.370 33.333 0.00 0.00 34.27 2.43
446 447 7.230712 CCCTCTATTCACAAAAGTAAGGTGTTT 59.769 37.037 0.00 0.00 34.27 2.83
447 448 6.715264 CCCTCTATTCACAAAAGTAAGGTGTT 59.285 38.462 0.00 0.00 34.27 3.32
448 449 6.043938 TCCCTCTATTCACAAAAGTAAGGTGT 59.956 38.462 0.00 0.00 34.27 4.16
449 450 6.472887 TCCCTCTATTCACAAAAGTAAGGTG 58.527 40.000 0.00 0.00 0.00 4.00
450 451 6.272558 ACTCCCTCTATTCACAAAAGTAAGGT 59.727 38.462 0.00 0.00 0.00 3.50
451 452 6.712276 ACTCCCTCTATTCACAAAAGTAAGG 58.288 40.000 0.00 0.00 0.00 2.69
452 453 8.311836 TGTACTCCCTCTATTCACAAAAGTAAG 58.688 37.037 0.00 0.00 0.00 2.34
453 454 8.092687 GTGTACTCCCTCTATTCACAAAAGTAA 58.907 37.037 0.00 0.00 0.00 2.24
454 455 7.233962 TGTGTACTCCCTCTATTCACAAAAGTA 59.766 37.037 0.00 0.00 32.66 2.24
455 456 6.042781 TGTGTACTCCCTCTATTCACAAAAGT 59.957 38.462 0.00 0.00 32.66 2.66
456 457 6.464222 TGTGTACTCCCTCTATTCACAAAAG 58.536 40.000 0.00 0.00 32.66 2.27
457 458 6.428083 TGTGTACTCCCTCTATTCACAAAA 57.572 37.500 0.00 0.00 32.66 2.44
458 459 5.046591 CCTGTGTACTCCCTCTATTCACAAA 60.047 44.000 0.00 0.00 34.70 2.83
459 460 4.466370 CCTGTGTACTCCCTCTATTCACAA 59.534 45.833 0.00 0.00 34.70 3.33
460 461 4.023980 CCTGTGTACTCCCTCTATTCACA 58.976 47.826 0.00 0.00 34.12 3.58
461 462 3.385111 CCCTGTGTACTCCCTCTATTCAC 59.615 52.174 0.00 0.00 0.00 3.18
462 463 3.643237 CCCTGTGTACTCCCTCTATTCA 58.357 50.000 0.00 0.00 0.00 2.57
463 464 2.365941 GCCCTGTGTACTCCCTCTATTC 59.634 54.545 0.00 0.00 0.00 1.75
464 465 2.399580 GCCCTGTGTACTCCCTCTATT 58.600 52.381 0.00 0.00 0.00 1.73
465 466 1.413227 GGCCCTGTGTACTCCCTCTAT 60.413 57.143 0.00 0.00 0.00 1.98
466 467 0.032416 GGCCCTGTGTACTCCCTCTA 60.032 60.000 0.00 0.00 0.00 2.43
467 468 1.306226 GGCCCTGTGTACTCCCTCT 60.306 63.158 0.00 0.00 0.00 3.69
468 469 1.306226 AGGCCCTGTGTACTCCCTC 60.306 63.158 0.00 0.00 0.00 4.30
469 470 1.306226 GAGGCCCTGTGTACTCCCT 60.306 63.158 0.00 0.00 0.00 4.20
470 471 0.983378 ATGAGGCCCTGTGTACTCCC 60.983 60.000 0.00 0.00 0.00 4.30
471 472 0.912486 AATGAGGCCCTGTGTACTCC 59.088 55.000 0.00 0.00 0.00 3.85
472 473 2.789409 AAATGAGGCCCTGTGTACTC 57.211 50.000 0.00 0.00 0.00 2.59
473 474 3.525800 AAAAATGAGGCCCTGTGTACT 57.474 42.857 0.00 0.00 0.00 2.73
490 491 1.003928 GGAGACCCTCGGGCTTAAAAA 59.996 52.381 0.82 0.00 39.32 1.94
491 492 0.616891 GGAGACCCTCGGGCTTAAAA 59.383 55.000 0.82 0.00 39.32 1.52
492 493 1.610554 CGGAGACCCTCGGGCTTAAA 61.611 60.000 0.82 0.00 39.32 1.52
493 494 2.056223 CGGAGACCCTCGGGCTTAA 61.056 63.158 0.82 0.00 39.32 1.85
494 495 2.441532 CGGAGACCCTCGGGCTTA 60.442 66.667 0.82 0.00 39.32 3.09
500 501 3.522731 CTGGAGCGGAGACCCTCG 61.523 72.222 0.00 0.00 0.00 4.63
501 502 1.258445 TTTCTGGAGCGGAGACCCTC 61.258 60.000 0.00 0.00 0.00 4.30
502 503 0.836400 TTTTCTGGAGCGGAGACCCT 60.836 55.000 0.00 0.00 0.00 4.34
503 504 0.036306 TTTTTCTGGAGCGGAGACCC 59.964 55.000 0.00 0.00 0.00 4.46
504 505 1.740025 CATTTTTCTGGAGCGGAGACC 59.260 52.381 0.00 0.00 0.00 3.85
505 506 2.427506 ACATTTTTCTGGAGCGGAGAC 58.572 47.619 0.00 0.00 0.00 3.36
506 507 2.859165 ACATTTTTCTGGAGCGGAGA 57.141 45.000 0.00 0.00 0.00 3.71
507 508 3.600388 AGTACATTTTTCTGGAGCGGAG 58.400 45.455 0.00 0.00 0.00 4.63
508 509 3.695830 AGTACATTTTTCTGGAGCGGA 57.304 42.857 0.00 0.00 0.00 5.54
509 510 4.504858 AGTAGTACATTTTTCTGGAGCGG 58.495 43.478 2.52 0.00 0.00 5.52
510 511 6.331061 ACTAGTAGTACATTTTTCTGGAGCG 58.669 40.000 0.00 0.00 0.00 5.03
519 520 9.944376 CCATGCCATATACTAGTAGTACATTTT 57.056 33.333 12.25 0.00 32.84 1.82
520 521 8.041323 GCCATGCCATATACTAGTAGTACATTT 58.959 37.037 12.25 0.00 32.84 2.32
521 522 7.180229 TGCCATGCCATATACTAGTAGTACATT 59.820 37.037 12.25 0.00 32.84 2.71
522 523 6.667848 TGCCATGCCATATACTAGTAGTACAT 59.332 38.462 12.25 3.62 32.84 2.29
523 524 6.014012 TGCCATGCCATATACTAGTAGTACA 58.986 40.000 12.25 0.95 32.84 2.90
524 525 6.331061 GTGCCATGCCATATACTAGTAGTAC 58.669 44.000 12.25 0.52 32.84 2.73
525 526 5.421056 GGTGCCATGCCATATACTAGTAGTA 59.579 44.000 12.38 12.38 34.82 1.82
526 527 4.223032 GGTGCCATGCCATATACTAGTAGT 59.777 45.833 8.85 8.14 0.00 2.73
527 528 4.467795 AGGTGCCATGCCATATACTAGTAG 59.532 45.833 8.85 0.00 0.00 2.57
528 529 4.425772 AGGTGCCATGCCATATACTAGTA 58.574 43.478 4.77 4.77 0.00 1.82
529 530 3.251484 AGGTGCCATGCCATATACTAGT 58.749 45.455 0.00 0.00 0.00 2.57
579 580 1.378514 CCCAATCCAACTCGGGTGG 60.379 63.158 0.00 0.00 39.11 4.61
607 608 1.736645 CGCTACACTGGTGGGTTCG 60.737 63.158 5.70 0.33 34.19 3.95
634 635 0.918799 TATGACATGTGGGCCCCAGT 60.919 55.000 22.27 12.58 32.34 4.00
636 637 0.258484 CTTATGACATGTGGGCCCCA 59.742 55.000 22.27 17.75 0.00 4.96
712 713 1.066858 ACACAAGACATGACTAGGGCG 60.067 52.381 0.00 0.00 0.00 6.13
724 725 3.058501 CCGATTGGGTAAACACACAAGAC 60.059 47.826 0.00 0.00 0.00 3.01
787 797 2.046892 CCACCCGAGCTGAGTTGG 60.047 66.667 0.00 0.00 0.00 3.77
810 820 3.441163 GGTGGTTCTTTTGTTTCGGTTC 58.559 45.455 0.00 0.00 0.00 3.62
850 860 1.444917 CGGATTTAAAGAGGGGGCGC 61.445 60.000 0.00 0.00 0.00 6.53
910 920 0.612174 TGAGAGTTGGCTAGAGGCGT 60.612 55.000 0.00 0.00 44.42 5.68
1857 1893 2.102588 GAGGCCGTAGATGTGGTTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
2401 2452 2.445438 CCTTCTTCTTCGTCGCCGC 61.445 63.158 0.00 0.00 0.00 6.53
2403 2454 2.101233 GGCCTTCTTCTTCGTCGCC 61.101 63.158 0.00 0.00 0.00 5.54
2468 2527 2.107953 GGTGCTCCATCTCTCGCC 59.892 66.667 0.00 0.00 0.00 5.54
2678 2745 2.437897 AGGCTCCCCTGTTTGCTG 59.562 61.111 0.00 0.00 40.94 4.41
2736 2803 7.698836 AGTGGAAAAGAAACGATTTTGATTG 57.301 32.000 0.00 0.00 30.22 2.67
2737 2804 7.438160 GGAAGTGGAAAAGAAACGATTTTGATT 59.562 33.333 0.00 0.00 30.22 2.57
2738 2805 6.923508 GGAAGTGGAAAAGAAACGATTTTGAT 59.076 34.615 0.00 0.00 30.22 2.57
2739 2806 6.270064 GGAAGTGGAAAAGAAACGATTTTGA 58.730 36.000 0.00 0.00 30.22 2.69
2740 2807 5.173131 CGGAAGTGGAAAAGAAACGATTTTG 59.827 40.000 0.00 0.00 30.22 2.44
2741 2808 5.163591 ACGGAAGTGGAAAAGAAACGATTTT 60.164 36.000 0.00 0.00 46.97 1.82
2742 2809 4.337274 ACGGAAGTGGAAAAGAAACGATTT 59.663 37.500 0.00 0.00 46.97 2.17
2743 2810 3.881089 ACGGAAGTGGAAAAGAAACGATT 59.119 39.130 0.00 0.00 46.97 3.34
2744 2811 3.473625 ACGGAAGTGGAAAAGAAACGAT 58.526 40.909 0.00 0.00 46.97 3.73
2745 2812 2.908916 ACGGAAGTGGAAAAGAAACGA 58.091 42.857 0.00 0.00 46.97 3.85
2797 2885 3.617122 GAGCGAGCAGAGCACACGA 62.617 63.158 0.00 0.00 37.01 4.35
2812 2900 3.307242 GTCTTGATATGGTTCACGTGAGC 59.693 47.826 22.62 22.62 0.00 4.26
2841 2929 3.310860 ATCGGGTCCGTCCAGCAAC 62.311 63.158 9.36 0.00 40.74 4.17
2842 2930 3.000819 ATCGGGTCCGTCCAGCAA 61.001 61.111 9.36 0.00 40.74 3.91
2852 2940 2.137810 TTTGGATTTGGGATCGGGTC 57.862 50.000 0.00 0.00 0.00 4.46
2855 2943 2.362077 GTGGATTTGGATTTGGGATCGG 59.638 50.000 0.00 0.00 0.00 4.18
2857 2945 4.650588 TGATGTGGATTTGGATTTGGGATC 59.349 41.667 0.00 0.00 0.00 3.36
2858 2946 4.622815 TGATGTGGATTTGGATTTGGGAT 58.377 39.130 0.00 0.00 0.00 3.85
2863 2964 4.159135 GCTGTCTGATGTGGATTTGGATTT 59.841 41.667 0.00 0.00 0.00 2.17
2931 3032 0.529337 AGCTCTGCGATCATGGTTCG 60.529 55.000 12.74 12.74 39.55 3.95
2937 3038 2.492012 GATTTGGAGCTCTGCGATCAT 58.508 47.619 14.64 0.00 0.00 2.45
2956 3061 5.265191 AGAGATGAAGTAGTACAGCTTGGA 58.735 41.667 2.52 0.00 32.88 3.53
2972 3077 4.458989 GTGCCAAAATGTACCAAGAGATGA 59.541 41.667 0.00 0.00 0.00 2.92
2975 3080 3.153919 GGTGCCAAAATGTACCAAGAGA 58.846 45.455 0.00 0.00 33.42 3.10
3073 3178 0.179179 GCCGTTCAATCAGAGCAAGC 60.179 55.000 0.00 0.00 0.00 4.01
3097 3202 4.781959 CCCGCCAACTGCAATGCG 62.782 66.667 0.00 10.69 46.14 4.73
3099 3204 3.762247 CCCCCGCCAACTGCAATG 61.762 66.667 0.00 0.00 41.33 2.82
3100 3205 3.944250 CTCCCCCGCCAACTGCAAT 62.944 63.158 0.00 0.00 41.33 3.56
3113 3219 2.908940 CGCCATCAATGCCTCCCC 60.909 66.667 0.00 0.00 0.00 4.81
3131 3237 2.805353 CGAACGACCGACAGCCAG 60.805 66.667 0.00 0.00 0.00 4.85
3234 3340 3.825585 TCCTCCTCATCTCATCTCATTCG 59.174 47.826 0.00 0.00 0.00 3.34
3311 3420 1.595609 CGATCGAGCAAGCACAAAAC 58.404 50.000 10.26 0.00 0.00 2.43
3388 3501 8.048016 ACATCCTCTACCTACAGTTCTATACT 57.952 38.462 0.00 0.00 37.68 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.