Multiple sequence alignment - TraesCS5D01G287800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G287800 chr5D 100.000 5200 0 0 1 5200 387295611 387300810 0.000000e+00 9603.0
1 TraesCS5D01G287800 chr5D 86.667 165 21 1 65 229 418479995 418480158 1.150000e-41 182.0
2 TraesCS5D01G287800 chr5A 92.576 2290 90 27 2956 5200 490037929 490040183 0.000000e+00 3214.0
3 TraesCS5D01G287800 chr5A 89.145 1999 98 49 789 2747 490035945 490037864 0.000000e+00 2379.0
4 TraesCS5D01G287800 chr5A 84.859 568 54 20 233 786 490032629 490033178 1.270000e-150 544.0
5 TraesCS5D01G287800 chr5A 94.241 191 11 0 2743 2933 552159573 552159763 5.090000e-75 292.0
6 TraesCS5D01G287800 chr5B 88.758 2375 103 70 453 2746 465833470 465835761 0.000000e+00 2756.0
7 TraesCS5D01G287800 chr5B 96.005 1627 40 16 2993 4609 465835854 465837465 0.000000e+00 2621.0
8 TraesCS5D01G287800 chr5B 80.208 96 10 4 239 325 465833252 465833347 4.350000e-06 63.9
9 TraesCS5D01G287800 chr3B 90.217 276 10 2 958 1218 119395322 119395049 1.390000e-90 344.0
10 TraesCS5D01G287800 chr3B 86.207 174 23 1 64 237 653153533 653153361 2.470000e-43 187.0
11 TraesCS5D01G287800 chr3B 85.714 168 23 1 66 232 637049502 637049335 5.350000e-40 176.0
12 TraesCS5D01G287800 chr3B 74.479 192 37 7 4890 5076 775267071 775267255 7.220000e-09 73.1
13 TraesCS5D01G287800 chr7D 95.288 191 9 0 2743 2933 45145771 45145961 2.350000e-78 303.0
14 TraesCS5D01G287800 chr7D 94.792 192 10 0 2742 2933 433896374 433896565 3.040000e-77 300.0
15 TraesCS5D01G287800 chr7D 77.273 132 22 4 4718 4842 479118261 479118391 2.600000e-08 71.3
16 TraesCS5D01G287800 chr2B 94.737 190 9 1 2747 2935 458962290 458962479 1.420000e-75 294.0
17 TraesCS5D01G287800 chr3D 94.709 189 9 1 2747 2934 3542070 3541882 5.090000e-75 292.0
18 TraesCS5D01G287800 chr4D 94.241 191 10 1 2743 2933 508931026 508931215 1.830000e-74 291.0
19 TraesCS5D01G287800 chr1D 93.750 192 12 0 2743 2934 473696511 473696320 6.590000e-74 289.0
20 TraesCS5D01G287800 chrUn 93.264 193 13 0 2741 2933 51492672 51492864 8.520000e-73 285.0
21 TraesCS5D01G287800 chrUn 92.857 196 14 0 2741 2936 348959350 348959155 8.520000e-73 285.0
22 TraesCS5D01G287800 chrUn 87.742 155 19 0 80 234 384739067 384739221 1.150000e-41 182.0
23 TraesCS5D01G287800 chrUn 76.829 246 43 10 1 234 342855166 342855409 5.470000e-25 126.0
24 TraesCS5D01G287800 chr2A 89.157 166 18 0 64 229 705582868 705583033 1.900000e-49 207.0
25 TraesCS5D01G287800 chr7A 88.312 154 18 0 76 229 501971688 501971841 8.890000e-43 185.0
26 TraesCS5D01G287800 chr2D 87.421 159 20 0 76 234 635476804 635476962 3.200000e-42 183.0
27 TraesCS5D01G287800 chr2D 87.421 159 20 0 76 234 635518737 635518895 3.200000e-42 183.0
28 TraesCS5D01G287800 chr2D 86.792 159 21 0 76 234 635485464 635485622 1.490000e-40 178.0
29 TraesCS5D01G287800 chr2D 86.792 159 21 0 76 234 635502806 635502964 1.490000e-40 178.0
30 TraesCS5D01G287800 chr2D 86.792 159 21 0 76 234 635510787 635510945 1.490000e-40 178.0
31 TraesCS5D01G287800 chr2D 86.164 159 22 0 76 234 635526713 635526871 6.920000e-39 172.0
32 TraesCS5D01G287800 chr2D 86.164 159 22 0 76 234 635535381 635535539 6.920000e-39 172.0
33 TraesCS5D01G287800 chr3A 86.503 163 20 2 64 225 165046451 165046612 1.490000e-40 178.0
34 TraesCS5D01G287800 chr3A 86.452 155 21 0 76 230 650851969 650852123 2.490000e-38 171.0
35 TraesCS5D01G287800 chr4B 87.097 155 16 3 76 229 95688210 95688059 6.920000e-39 172.0
36 TraesCS5D01G287800 chr4B 84.706 170 22 3 64 231 180628800 180628967 3.220000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G287800 chr5D 387295611 387300810 5199 False 9603.000000 9603 100.000000 1 5200 1 chr5D.!!$F1 5199
1 TraesCS5D01G287800 chr5A 490032629 490040183 7554 False 2045.666667 3214 88.860000 233 5200 3 chr5A.!!$F2 4967
2 TraesCS5D01G287800 chr5B 465833252 465837465 4213 False 1813.633333 2756 88.323667 239 4609 3 chr5B.!!$F1 4370

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
450 487 0.100861 GAAAGACCTACTCGGCGGAG 59.899 60.0 18.87 18.87 46.13 4.63 F
1448 4293 0.168128 GCACCGTGCCAAGTTATCAC 59.832 55.0 12.80 0.00 37.42 3.06 F
1552 4400 0.178958 CGGTAGATAGACCCAGGCCT 60.179 60.0 0.00 0.00 35.95 5.19 F
2754 5672 0.045778 ATGGCCTACTAAGGGGGTGT 59.954 55.0 3.32 0.00 43.87 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1499 4344 0.108898 AAGAGCAGTGACTAGCAGCG 60.109 55.000 9.11 0.0 0.00 5.18 R
2608 5516 0.110056 GACAGCAAGTCGGCAACATG 60.110 55.000 0.00 0.0 37.53 3.21 R
2919 5837 1.203125 ACCCCAATTAGGTGGTGTTGG 60.203 52.381 0.00 0.0 38.88 3.77 R
4697 7645 0.417841 ACCACCATCACCCTACCTCT 59.582 55.000 0.00 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.759236 GGGGGTAGAAATAGGGCGG 59.241 63.158 0.00 0.00 0.00 6.13
19 20 1.058428 GGGGGTAGAAATAGGGCGGT 61.058 60.000 0.00 0.00 0.00 5.68
20 21 0.841961 GGGGTAGAAATAGGGCGGTT 59.158 55.000 0.00 0.00 0.00 4.44
21 22 1.213678 GGGGTAGAAATAGGGCGGTTT 59.786 52.381 0.00 0.00 0.00 3.27
22 23 2.294979 GGGTAGAAATAGGGCGGTTTG 58.705 52.381 0.00 0.00 0.00 2.93
23 24 2.356432 GGGTAGAAATAGGGCGGTTTGT 60.356 50.000 0.00 0.00 0.00 2.83
24 25 2.941064 GGTAGAAATAGGGCGGTTTGTC 59.059 50.000 0.00 0.00 0.00 3.18
25 26 3.370209 GGTAGAAATAGGGCGGTTTGTCT 60.370 47.826 0.00 0.00 0.00 3.41
26 27 2.987232 AGAAATAGGGCGGTTTGTCTC 58.013 47.619 0.00 0.00 0.00 3.36
27 28 2.014857 GAAATAGGGCGGTTTGTCTCC 58.985 52.381 0.00 0.00 0.00 3.71
28 29 0.255033 AATAGGGCGGTTTGTCTCCC 59.745 55.000 0.00 0.00 39.05 4.30
29 30 1.632965 ATAGGGCGGTTTGTCTCCCC 61.633 60.000 0.00 0.00 39.59 4.81
31 32 4.011517 GGCGGTTTGTCTCCCCGA 62.012 66.667 0.85 0.00 44.41 5.14
32 33 2.741211 GCGGTTTGTCTCCCCGAC 60.741 66.667 0.85 0.00 44.41 4.79
33 34 3.057337 CGGTTTGTCTCCCCGACT 58.943 61.111 0.00 0.00 44.41 4.18
34 35 1.080025 CGGTTTGTCTCCCCGACTC 60.080 63.158 0.00 0.00 44.41 3.36
35 36 1.080025 GGTTTGTCTCCCCGACTCG 60.080 63.158 0.00 0.00 43.25 4.18
36 37 1.737008 GTTTGTCTCCCCGACTCGC 60.737 63.158 0.00 0.00 43.25 5.03
37 38 3.277211 TTTGTCTCCCCGACTCGCG 62.277 63.158 0.00 0.00 43.25 5.87
54 55 3.813724 GGGCCAGGGGAGGACATG 61.814 72.222 4.39 0.00 38.98 3.21
55 56 3.813724 GGCCAGGGGAGGACATGG 61.814 72.222 0.00 0.00 36.38 3.66
56 57 3.813724 GCCAGGGGAGGACATGGG 61.814 72.222 0.00 0.00 33.23 4.00
57 58 3.813724 CCAGGGGAGGACATGGGC 61.814 72.222 0.00 0.00 0.00 5.36
58 59 3.016971 CAGGGGAGGACATGGGCA 61.017 66.667 0.00 0.00 0.00 5.36
59 60 2.693864 AGGGGAGGACATGGGCAG 60.694 66.667 0.00 0.00 0.00 4.85
60 61 3.813724 GGGGAGGACATGGGCAGG 61.814 72.222 0.00 0.00 0.00 4.85
61 62 4.512914 GGGAGGACATGGGCAGGC 62.513 72.222 0.00 0.00 0.00 4.85
62 63 4.864334 GGAGGACATGGGCAGGCG 62.864 72.222 0.00 0.00 0.00 5.52
76 77 2.509786 GGCGCCGTTCGACCATAA 60.510 61.111 12.58 0.00 41.34 1.90
77 78 2.101835 GGCGCCGTTCGACCATAAA 61.102 57.895 12.58 0.00 41.34 1.40
78 79 1.059838 GCGCCGTTCGACCATAAAC 59.940 57.895 0.00 0.00 41.67 2.01
79 80 1.356527 GCGCCGTTCGACCATAAACT 61.357 55.000 0.00 0.00 41.67 2.66
80 81 1.073177 CGCCGTTCGACCATAAACTT 58.927 50.000 0.00 0.00 41.67 2.66
81 82 1.201877 CGCCGTTCGACCATAAACTTG 60.202 52.381 0.00 0.00 41.67 3.16
82 83 1.129811 GCCGTTCGACCATAAACTTGG 59.870 52.381 0.00 0.00 42.82 3.61
83 84 1.129811 CCGTTCGACCATAAACTTGGC 59.870 52.381 0.00 0.00 40.68 4.52
84 85 1.129811 CGTTCGACCATAAACTTGGCC 59.870 52.381 0.00 0.00 40.68 5.36
85 86 1.471287 GTTCGACCATAAACTTGGCCC 59.529 52.381 0.00 0.00 40.68 5.80
86 87 0.693622 TCGACCATAAACTTGGCCCA 59.306 50.000 0.00 0.00 40.68 5.36
87 88 1.074084 TCGACCATAAACTTGGCCCAA 59.926 47.619 0.00 0.00 40.68 4.12
88 89 1.889829 CGACCATAAACTTGGCCCAAA 59.110 47.619 0.00 0.00 40.68 3.28
89 90 2.352323 CGACCATAAACTTGGCCCAAAC 60.352 50.000 0.00 0.00 40.68 2.93
90 91 2.897326 GACCATAAACTTGGCCCAAACT 59.103 45.455 0.00 0.00 40.68 2.66
91 92 3.313791 ACCATAAACTTGGCCCAAACTT 58.686 40.909 0.00 0.00 40.68 2.66
92 93 3.070878 ACCATAAACTTGGCCCAAACTTG 59.929 43.478 0.00 0.00 40.68 3.16
93 94 6.023975 ACCATAAACTTGGCCCAAACTTGG 62.024 45.833 0.00 3.58 42.80 3.61
101 102 4.911901 CCAAACTTGGGTCGGGAA 57.088 55.556 0.09 0.00 44.70 3.97
102 103 3.356814 CCAAACTTGGGTCGGGAAT 57.643 52.632 0.09 0.00 44.70 3.01
103 104 0.887933 CCAAACTTGGGTCGGGAATG 59.112 55.000 0.09 0.00 44.70 2.67
104 105 0.887933 CAAACTTGGGTCGGGAATGG 59.112 55.000 0.00 0.00 0.00 3.16
105 106 0.251608 AAACTTGGGTCGGGAATGGG 60.252 55.000 0.00 0.00 0.00 4.00
106 107 1.432023 AACTTGGGTCGGGAATGGGT 61.432 55.000 0.00 0.00 0.00 4.51
107 108 1.077716 CTTGGGTCGGGAATGGGTC 60.078 63.158 0.00 0.00 0.00 4.46
108 109 2.869503 CTTGGGTCGGGAATGGGTCG 62.870 65.000 0.00 0.00 0.00 4.79
109 110 3.078836 GGGTCGGGAATGGGTCGA 61.079 66.667 0.00 0.00 0.00 4.20
110 111 2.662070 GGGTCGGGAATGGGTCGAA 61.662 63.158 0.00 0.00 34.62 3.71
111 112 1.297364 GGTCGGGAATGGGTCGAAA 59.703 57.895 0.00 0.00 34.62 3.46
112 113 0.743345 GGTCGGGAATGGGTCGAAAG 60.743 60.000 0.00 0.00 34.62 2.62
113 114 1.078708 TCGGGAATGGGTCGAAAGC 60.079 57.895 0.00 0.00 0.00 3.51
114 115 2.461110 CGGGAATGGGTCGAAAGCG 61.461 63.158 0.00 0.00 39.35 4.68
115 116 2.112815 GGGAATGGGTCGAAAGCGG 61.113 63.158 0.00 0.00 38.28 5.52
116 117 2.112815 GGAATGGGTCGAAAGCGGG 61.113 63.158 0.00 0.00 38.28 6.13
117 118 2.750237 AATGGGTCGAAAGCGGGC 60.750 61.111 0.00 0.00 38.28 6.13
118 119 3.561120 AATGGGTCGAAAGCGGGCA 62.561 57.895 0.00 0.00 38.28 5.36
119 120 3.976701 ATGGGTCGAAAGCGGGCAG 62.977 63.158 0.00 0.00 38.28 4.85
120 121 4.388499 GGGTCGAAAGCGGGCAGA 62.388 66.667 0.00 0.00 38.28 4.26
121 122 2.358247 GGTCGAAAGCGGGCAGAA 60.358 61.111 0.00 0.00 38.28 3.02
122 123 1.964373 GGTCGAAAGCGGGCAGAAA 60.964 57.895 0.00 0.00 38.28 2.52
123 124 1.512156 GGTCGAAAGCGGGCAGAAAA 61.512 55.000 0.00 0.00 38.28 2.29
124 125 0.385598 GTCGAAAGCGGGCAGAAAAC 60.386 55.000 0.00 0.00 38.28 2.43
125 126 1.440353 CGAAAGCGGGCAGAAAACG 60.440 57.895 0.00 0.00 0.00 3.60
126 127 1.081442 GAAAGCGGGCAGAAAACGG 60.081 57.895 0.00 0.00 0.00 4.44
127 128 1.512156 GAAAGCGGGCAGAAAACGGA 61.512 55.000 0.00 0.00 0.00 4.69
128 129 0.893727 AAAGCGGGCAGAAAACGGAT 60.894 50.000 0.00 0.00 0.00 4.18
129 130 1.586154 AAGCGGGCAGAAAACGGATG 61.586 55.000 0.00 0.00 0.00 3.51
130 131 2.038269 GCGGGCAGAAAACGGATGA 61.038 57.895 0.00 0.00 0.00 2.92
131 132 1.794222 CGGGCAGAAAACGGATGAC 59.206 57.895 0.00 0.00 0.00 3.06
135 136 0.442699 GCAGAAAACGGATGACGGTC 59.557 55.000 0.00 0.00 45.59 4.79
136 137 1.076332 CAGAAAACGGATGACGGTCC 58.924 55.000 5.55 0.00 45.59 4.46
143 144 2.452767 GGATGACGGTCCGTTTGAC 58.547 57.895 19.95 6.10 41.37 3.18
144 145 1.349259 GGATGACGGTCCGTTTGACG 61.349 60.000 19.95 0.00 45.46 4.35
145 146 1.952266 GATGACGGTCCGTTTGACGC 61.952 60.000 19.95 4.89 45.46 5.19
146 147 3.408851 GACGGTCCGTTTGACGCC 61.409 66.667 19.95 0.00 45.46 5.68
167 168 2.282462 CGTTGGGAGGCCTGCTTT 60.282 61.111 24.77 0.00 0.00 3.51
168 169 1.002624 CGTTGGGAGGCCTGCTTTA 60.003 57.895 24.77 8.24 0.00 1.85
169 170 0.394352 CGTTGGGAGGCCTGCTTTAT 60.394 55.000 24.77 0.00 0.00 1.40
170 171 1.393603 GTTGGGAGGCCTGCTTTATC 58.606 55.000 24.77 7.39 0.00 1.75
171 172 0.258774 TTGGGAGGCCTGCTTTATCC 59.741 55.000 24.77 10.43 0.00 2.59
172 173 1.227973 GGGAGGCCTGCTTTATCCG 60.228 63.158 24.77 0.00 0.00 4.18
173 174 1.527370 GGAGGCCTGCTTTATCCGT 59.473 57.895 18.47 0.00 0.00 4.69
174 175 0.107165 GGAGGCCTGCTTTATCCGTT 60.107 55.000 18.47 0.00 0.00 4.44
175 176 1.682087 GGAGGCCTGCTTTATCCGTTT 60.682 52.381 18.47 0.00 0.00 3.60
176 177 2.420967 GGAGGCCTGCTTTATCCGTTTA 60.421 50.000 18.47 0.00 0.00 2.01
177 178 2.612672 GAGGCCTGCTTTATCCGTTTAC 59.387 50.000 12.00 0.00 0.00 2.01
178 179 1.674441 GGCCTGCTTTATCCGTTTACC 59.326 52.381 0.00 0.00 0.00 2.85
179 180 1.674441 GCCTGCTTTATCCGTTTACCC 59.326 52.381 0.00 0.00 0.00 3.69
180 181 2.294979 CCTGCTTTATCCGTTTACCCC 58.705 52.381 0.00 0.00 0.00 4.95
181 182 2.294979 CTGCTTTATCCGTTTACCCCC 58.705 52.381 0.00 0.00 0.00 5.40
182 183 1.634459 TGCTTTATCCGTTTACCCCCA 59.366 47.619 0.00 0.00 0.00 4.96
183 184 2.041350 TGCTTTATCCGTTTACCCCCAA 59.959 45.455 0.00 0.00 0.00 4.12
184 185 3.090790 GCTTTATCCGTTTACCCCCAAA 58.909 45.455 0.00 0.00 0.00 3.28
185 186 3.119388 GCTTTATCCGTTTACCCCCAAAC 60.119 47.826 0.00 0.00 35.49 2.93
203 204 2.836360 GGATACGGGCGGACAGGA 60.836 66.667 0.00 0.00 0.00 3.86
204 205 2.207924 GGATACGGGCGGACAGGAT 61.208 63.158 0.00 0.00 0.00 3.24
205 206 1.006102 GATACGGGCGGACAGGATG 60.006 63.158 0.00 0.00 46.00 3.51
206 207 2.436087 GATACGGGCGGACAGGATGG 62.436 65.000 0.00 0.00 43.62 3.51
210 211 4.176752 GGCGGACAGGATGGGGTC 62.177 72.222 0.00 0.00 43.62 4.46
211 212 4.530857 GCGGACAGGATGGGGTCG 62.531 72.222 0.00 0.00 43.62 4.79
212 213 4.530857 CGGACAGGATGGGGTCGC 62.531 72.222 0.00 0.00 43.62 5.19
213 214 4.530857 GGACAGGATGGGGTCGCG 62.531 72.222 0.00 0.00 43.62 5.87
224 225 4.072088 GGTCGCGCGTTGGAGTTG 62.072 66.667 30.98 0.00 0.00 3.16
225 226 4.072088 GTCGCGCGTTGGAGTTGG 62.072 66.667 30.98 0.00 0.00 3.77
229 230 2.047655 CGCGTTGGAGTTGGCCTA 60.048 61.111 3.32 0.00 0.00 3.93
230 231 1.669760 CGCGTTGGAGTTGGCCTAA 60.670 57.895 3.32 0.00 0.00 2.69
231 232 1.231958 CGCGTTGGAGTTGGCCTAAA 61.232 55.000 3.32 0.00 0.00 1.85
254 255 2.274437 ACACTTGCTATGACATCGCAG 58.726 47.619 13.63 10.82 34.82 5.18
268 269 4.351192 ACATCGCAGTTTCAAACTTGTTC 58.649 39.130 0.00 0.00 40.46 3.18
273 274 6.613233 TCGCAGTTTCAAACTTGTTCTTTTA 58.387 32.000 0.00 0.00 40.46 1.52
328 365 4.631813 CGCTAAACATGCTCTAGGTCTTTT 59.368 41.667 0.00 0.00 0.00 2.27
332 369 6.715347 AAACATGCTCTAGGTCTTTTTGTT 57.285 33.333 0.00 0.00 0.00 2.83
338 375 4.377897 CTCTAGGTCTTTTTGTTGGACGT 58.622 43.478 0.00 0.00 33.61 4.34
353 390 1.363744 GACGTCATCTTTGGCTCCTG 58.636 55.000 11.55 0.00 0.00 3.86
382 419 5.149239 TCCGGACCTACATTATTGTATCCA 58.851 41.667 0.00 0.00 37.35 3.41
427 464 8.121305 TCAATAAAGTTGGCATGTTTGAGTAT 57.879 30.769 0.00 0.00 0.00 2.12
428 465 8.584157 TCAATAAAGTTGGCATGTTTGAGTATT 58.416 29.630 0.00 0.00 0.00 1.89
433 470 7.759489 AGTTGGCATGTTTGAGTATTAAGAA 57.241 32.000 0.00 0.00 0.00 2.52
434 471 8.177119 AGTTGGCATGTTTGAGTATTAAGAAA 57.823 30.769 0.00 0.00 0.00 2.52
436 473 7.994425 TGGCATGTTTGAGTATTAAGAAAGA 57.006 32.000 0.00 0.00 0.00 2.52
438 475 7.094377 TGGCATGTTTGAGTATTAAGAAAGACC 60.094 37.037 0.00 0.00 0.00 3.85
439 476 7.121315 GGCATGTTTGAGTATTAAGAAAGACCT 59.879 37.037 0.00 0.00 0.00 3.85
440 477 9.162764 GCATGTTTGAGTATTAAGAAAGACCTA 57.837 33.333 0.00 0.00 0.00 3.08
443 480 9.924650 TGTTTGAGTATTAAGAAAGACCTACTC 57.075 33.333 0.00 0.00 36.96 2.59
444 481 9.074443 GTTTGAGTATTAAGAAAGACCTACTCG 57.926 37.037 0.00 0.00 38.46 4.18
445 482 7.330900 TGAGTATTAAGAAAGACCTACTCGG 57.669 40.000 0.00 0.00 38.46 4.63
446 483 6.146601 AGTATTAAGAAAGACCTACTCGGC 57.853 41.667 0.00 0.00 35.61 5.54
447 484 3.498927 TTAAGAAAGACCTACTCGGCG 57.501 47.619 0.00 0.00 35.61 6.46
448 485 0.531200 AAGAAAGACCTACTCGGCGG 59.469 55.000 7.21 0.00 35.61 6.13
449 486 0.323178 AGAAAGACCTACTCGGCGGA 60.323 55.000 7.21 0.00 35.61 5.54
450 487 0.100861 GAAAGACCTACTCGGCGGAG 59.899 60.000 18.87 18.87 46.13 4.63
506 555 2.627515 GCATCAGGCAATGTAGGAGA 57.372 50.000 2.46 0.00 43.97 3.71
576 625 3.190849 CCCACGCGATGCACAGAG 61.191 66.667 15.93 0.00 0.00 3.35
605 654 4.329545 GCAGGGCGAGGACAACCA 62.330 66.667 0.00 0.00 38.94 3.67
622 671 1.091771 CCAGTGCAATGTCTAGCCGG 61.092 60.000 13.82 0.00 0.00 6.13
638 688 1.667154 CCGGTCGAGAGCCTCATCAA 61.667 60.000 0.00 0.00 0.00 2.57
639 689 0.173481 CGGTCGAGAGCCTCATCAAA 59.827 55.000 0.00 0.00 0.00 2.69
651 701 5.708544 AGCCTCATCAAATAATCCATCCAA 58.291 37.500 0.00 0.00 0.00 3.53
652 702 6.138263 AGCCTCATCAAATAATCCATCCAAA 58.862 36.000 0.00 0.00 0.00 3.28
653 703 6.041296 AGCCTCATCAAATAATCCATCCAAAC 59.959 38.462 0.00 0.00 0.00 2.93
654 704 6.739565 GCCTCATCAAATAATCCATCCAAACC 60.740 42.308 0.00 0.00 0.00 3.27
656 706 5.602145 TCATCAAATAATCCATCCAAACCCC 59.398 40.000 0.00 0.00 0.00 4.95
657 707 4.952845 TCAAATAATCCATCCAAACCCCA 58.047 39.130 0.00 0.00 0.00 4.96
658 708 4.961730 TCAAATAATCCATCCAAACCCCAG 59.038 41.667 0.00 0.00 0.00 4.45
660 710 0.413037 AATCCATCCAAACCCCAGCA 59.587 50.000 0.00 0.00 0.00 4.41
664 714 1.610379 ATCCAAACCCCAGCAAGCC 60.610 57.895 0.00 0.00 0.00 4.35
1435 4280 3.747976 GGTACCGTACCGCACCGT 61.748 66.667 12.01 0.00 39.39 4.83
1437 4282 4.418401 TACCGTACCGCACCGTGC 62.418 66.667 13.81 13.81 40.69 5.34
1441 4286 3.419759 GTACCGCACCGTGCCAAG 61.420 66.667 17.81 9.32 41.12 3.61
1442 4287 3.931247 TACCGCACCGTGCCAAGT 61.931 61.111 17.81 14.36 41.12 3.16
1443 4288 3.463728 TACCGCACCGTGCCAAGTT 62.464 57.895 17.81 0.62 41.12 2.66
1444 4289 2.097201 TACCGCACCGTGCCAAGTTA 62.097 55.000 17.81 0.00 41.12 2.24
1445 4290 2.038269 CCGCACCGTGCCAAGTTAT 61.038 57.895 17.81 0.00 41.12 1.89
1447 4292 1.295357 CGCACCGTGCCAAGTTATCA 61.295 55.000 17.81 0.00 41.12 2.15
1448 4293 0.168128 GCACCGTGCCAAGTTATCAC 59.832 55.000 12.80 0.00 37.42 3.06
1449 4294 0.802494 CACCGTGCCAAGTTATCACC 59.198 55.000 0.00 0.00 0.00 4.02
1450 4295 0.398696 ACCGTGCCAAGTTATCACCA 59.601 50.000 2.30 0.00 0.00 4.17
1451 4296 1.202830 ACCGTGCCAAGTTATCACCAA 60.203 47.619 2.30 0.00 0.00 3.67
1452 4297 1.468520 CCGTGCCAAGTTATCACCAAG 59.531 52.381 2.30 0.00 0.00 3.61
1455 4300 0.451783 GCCAAGTTATCACCAAGCGG 59.548 55.000 0.00 0.00 38.77 5.52
1493 4338 3.996124 CGCCGGCCAGCTAGCTAT 61.996 66.667 23.46 0.00 0.00 2.97
1495 4340 2.872388 GCCGGCCAGCTAGCTATCA 61.872 63.158 18.86 0.00 0.00 2.15
1499 4344 1.666234 GCCAGCTAGCTATCACGCC 60.666 63.158 18.86 0.00 0.00 5.68
1510 4355 1.381165 TATCACGCCGCTGCTAGTCA 61.381 55.000 0.00 0.00 34.43 3.41
1552 4400 0.178958 CGGTAGATAGACCCAGGCCT 60.179 60.000 0.00 0.00 35.95 5.19
1554 4402 1.249407 GTAGATAGACCCAGGCCTCG 58.751 60.000 0.00 0.00 0.00 4.63
1555 4403 0.539901 TAGATAGACCCAGGCCTCGC 60.540 60.000 0.00 0.00 0.00 5.03
1659 4529 0.519961 AGTAATTTTGTCGGCACCGC 59.480 50.000 3.66 0.23 39.59 5.68
1676 4546 2.556622 ACCGCCCATTAGACAGTTTTTG 59.443 45.455 0.00 0.00 0.00 2.44
1779 4658 6.864342 TGCACTTAGGTCTAACTAACTGATC 58.136 40.000 0.00 0.00 0.00 2.92
1932 4816 3.066814 CCCAGCTGCTCCTTTGCC 61.067 66.667 8.66 0.00 0.00 4.52
2007 4891 2.084610 TCCTTCTTCGTGATGCAGTG 57.915 50.000 0.00 0.00 0.00 3.66
2009 4893 1.609061 CCTTCTTCGTGATGCAGTGGT 60.609 52.381 0.00 0.00 0.00 4.16
2016 4900 1.608025 CGTGATGCAGTGGTAGTTGGT 60.608 52.381 0.00 0.00 0.00 3.67
2017 4901 1.806542 GTGATGCAGTGGTAGTTGGTG 59.193 52.381 0.00 0.00 0.00 4.17
2018 4902 1.696884 TGATGCAGTGGTAGTTGGTGA 59.303 47.619 0.00 0.00 0.00 4.02
2019 4903 2.076863 GATGCAGTGGTAGTTGGTGAC 58.923 52.381 0.00 0.00 0.00 3.67
2045 4929 3.178865 GGATGGGGTTCCGGATAGAATA 58.821 50.000 4.15 0.00 35.24 1.75
2046 4930 3.197983 GGATGGGGTTCCGGATAGAATAG 59.802 52.174 4.15 0.00 35.24 1.73
2047 4931 2.616524 TGGGGTTCCGGATAGAATAGG 58.383 52.381 4.15 0.00 35.24 2.57
2087 4979 3.492353 GGATGCCCTGCCCTGCTA 61.492 66.667 0.00 0.00 0.00 3.49
2088 4980 2.112718 GATGCCCTGCCCTGCTAG 59.887 66.667 0.00 0.00 0.00 3.42
2089 4981 4.201122 ATGCCCTGCCCTGCTAGC 62.201 66.667 8.10 8.10 0.00 3.42
2183 5075 5.132897 TGTGGAATTAATGGTGTCTTTGC 57.867 39.130 0.00 0.00 0.00 3.68
2197 5089 3.499537 TGTCTTTGCACTGCTATCAACAG 59.500 43.478 1.98 0.00 41.08 3.16
2396 5304 2.082231 TCGAGTGAGTGTAGTGTAGCC 58.918 52.381 0.00 0.00 0.00 3.93
2517 5425 7.311364 CATTTGAAAATGATGGGAATTGGAC 57.689 36.000 9.69 0.00 46.72 4.02
2547 5455 2.952310 GCTGGATCTCGCCCTTTTTAAT 59.048 45.455 0.00 0.00 0.00 1.40
2590 5498 8.928448 AGTGATAGATAAGATTGCCTCTTTGTA 58.072 33.333 4.19 0.00 41.60 2.41
2591 5499 9.547753 GTGATAGATAAGATTGCCTCTTTGTAA 57.452 33.333 4.19 0.00 41.60 2.41
2592 5500 9.547753 TGATAGATAAGATTGCCTCTTTGTAAC 57.452 33.333 4.19 0.00 41.60 2.50
2593 5501 8.910351 ATAGATAAGATTGCCTCTTTGTAACC 57.090 34.615 4.19 0.00 41.60 2.85
2595 5503 7.175104 AGATAAGATTGCCTCTTTGTAACCAA 58.825 34.615 4.19 0.00 41.60 3.67
2596 5504 5.712152 AAGATTGCCTCTTTGTAACCAAG 57.288 39.130 0.00 0.00 41.60 3.61
2597 5505 4.729868 AGATTGCCTCTTTGTAACCAAGT 58.270 39.130 0.00 0.00 0.00 3.16
2598 5506 4.520492 AGATTGCCTCTTTGTAACCAAGTG 59.480 41.667 0.00 0.00 0.00 3.16
2599 5507 2.582052 TGCCTCTTTGTAACCAAGTGG 58.418 47.619 0.00 0.00 42.17 4.00
2600 5508 2.173782 TGCCTCTTTGTAACCAAGTGGA 59.826 45.455 3.83 0.00 38.94 4.02
2601 5509 2.814336 GCCTCTTTGTAACCAAGTGGAG 59.186 50.000 3.83 6.75 38.94 3.86
2604 5512 3.740115 TCTTTGTAACCAAGTGGAGAGC 58.260 45.455 3.83 0.00 38.94 4.09
2605 5513 2.163818 TTGTAACCAAGTGGAGAGCG 57.836 50.000 3.83 0.00 38.94 5.03
2608 5516 0.320421 TAACCAAGTGGAGAGCGTGC 60.320 55.000 3.83 0.00 38.94 5.34
2617 5528 3.372676 GAGAGCGTGCATGTTGCCG 62.373 63.158 7.93 0.00 44.23 5.69
2656 5568 0.606401 ACCCACTGGTCGCTTCATTG 60.606 55.000 0.00 0.00 43.06 2.82
2748 5666 4.013267 CCATGAAGATGGCCTACTAAGG 57.987 50.000 3.32 0.54 43.00 2.69
2751 5669 1.700186 GAAGATGGCCTACTAAGGGGG 59.300 57.143 3.32 0.00 43.87 5.40
2752 5670 0.648301 AGATGGCCTACTAAGGGGGT 59.352 55.000 3.32 0.00 43.87 4.95
2753 5671 0.765510 GATGGCCTACTAAGGGGGTG 59.234 60.000 3.32 0.00 43.87 4.61
2754 5672 0.045778 ATGGCCTACTAAGGGGGTGT 59.954 55.000 3.32 0.00 43.87 4.16
2755 5673 0.178855 TGGCCTACTAAGGGGGTGTT 60.179 55.000 3.32 0.00 43.87 3.32
2757 5675 1.340697 GGCCTACTAAGGGGGTGTTTG 60.341 57.143 0.00 0.00 43.87 2.93
2760 5678 2.377531 CCTACTAAGGGGGTGTTTGGTT 59.622 50.000 0.00 0.00 39.48 3.67
2761 5679 2.670019 ACTAAGGGGGTGTTTGGTTC 57.330 50.000 0.00 0.00 0.00 3.62
2762 5680 1.146359 ACTAAGGGGGTGTTTGGTTCC 59.854 52.381 0.00 0.00 0.00 3.62
2763 5681 1.146152 CTAAGGGGGTGTTTGGTTCCA 59.854 52.381 0.00 0.00 0.00 3.53
2764 5682 0.105709 AAGGGGGTGTTTGGTTCCAG 60.106 55.000 0.00 0.00 0.00 3.86
2765 5683 1.533033 GGGGGTGTTTGGTTCCAGG 60.533 63.158 0.00 0.00 0.00 4.45
2766 5684 1.533033 GGGGTGTTTGGTTCCAGGG 60.533 63.158 0.00 0.00 0.00 4.45
2769 5687 0.185175 GGTGTTTGGTTCCAGGGACT 59.815 55.000 0.00 0.00 43.88 3.85
2773 5691 3.196901 GTGTTTGGTTCCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
2797 5715 8.617290 TTTGTATTGAGACTAGAAAAAGTCCC 57.383 34.615 0.00 0.00 45.86 4.46
2799 5717 8.660295 TGTATTGAGACTAGAAAAAGTCCCTA 57.340 34.615 0.00 0.00 45.86 3.53
2800 5718 8.750298 TGTATTGAGACTAGAAAAAGTCCCTAG 58.250 37.037 0.00 0.00 45.86 3.02
2801 5719 5.662674 TGAGACTAGAAAAAGTCCCTAGC 57.337 43.478 0.00 0.00 45.86 3.42
2802 5720 5.084519 TGAGACTAGAAAAAGTCCCTAGCA 58.915 41.667 0.00 0.00 45.86 3.49
2803 5721 5.542635 TGAGACTAGAAAAAGTCCCTAGCAA 59.457 40.000 0.00 0.00 45.86 3.91
2804 5722 6.042781 TGAGACTAGAAAAAGTCCCTAGCAAA 59.957 38.462 0.00 0.00 45.86 3.68
2805 5723 6.231951 AGACTAGAAAAAGTCCCTAGCAAAC 58.768 40.000 0.00 0.00 45.86 2.93
2806 5724 5.314529 ACTAGAAAAAGTCCCTAGCAAACC 58.685 41.667 0.00 0.00 34.70 3.27
2807 5725 4.178956 AGAAAAAGTCCCTAGCAAACCA 57.821 40.909 0.00 0.00 0.00 3.67
2808 5726 4.542697 AGAAAAAGTCCCTAGCAAACCAA 58.457 39.130 0.00 0.00 0.00 3.67
2810 5728 4.665833 AAAAGTCCCTAGCAAACCAAAC 57.334 40.909 0.00 0.00 0.00 2.93
2811 5729 3.306472 AAGTCCCTAGCAAACCAAACA 57.694 42.857 0.00 0.00 0.00 2.83
2812 5730 3.525800 AGTCCCTAGCAAACCAAACAT 57.474 42.857 0.00 0.00 0.00 2.71
2813 5731 3.157087 AGTCCCTAGCAAACCAAACATG 58.843 45.455 0.00 0.00 0.00 3.21
2814 5732 2.231235 GTCCCTAGCAAACCAAACATGG 59.769 50.000 0.00 0.00 0.00 3.66
2815 5733 2.158385 TCCCTAGCAAACCAAACATGGT 60.158 45.455 0.00 0.00 45.55 3.55
2816 5734 2.029110 CCCTAGCAAACCAAACATGGTG 60.029 50.000 0.47 0.00 42.20 4.17
2817 5735 2.029110 CCTAGCAAACCAAACATGGTGG 60.029 50.000 14.45 14.45 42.20 4.61
2818 5736 0.758123 AGCAAACCAAACATGGTGGG 59.242 50.000 18.83 12.47 42.20 4.61
2819 5737 0.755686 GCAAACCAAACATGGTGGGA 59.244 50.000 12.48 0.00 42.20 4.37
2820 5738 1.540146 GCAAACCAAACATGGTGGGAC 60.540 52.381 12.48 0.00 42.20 4.46
2821 5739 2.038659 CAAACCAAACATGGTGGGACT 58.961 47.619 12.48 0.00 42.20 3.85
2822 5740 2.433970 CAAACCAAACATGGTGGGACTT 59.566 45.455 12.48 0.30 42.20 3.01
2823 5741 2.470057 ACCAAACATGGTGGGACTTT 57.530 45.000 12.48 0.00 41.33 2.66
2824 5742 2.758130 ACCAAACATGGTGGGACTTTT 58.242 42.857 12.48 0.00 41.33 2.27
2825 5743 3.111484 ACCAAACATGGTGGGACTTTTT 58.889 40.909 12.48 0.00 41.33 1.94
2853 5771 7.492352 GACTTTTTGCTACAAGTCCTTAGAA 57.508 36.000 13.99 0.00 42.11 2.10
2854 5772 7.497925 ACTTTTTGCTACAAGTCCTTAGAAG 57.502 36.000 0.00 0.00 0.00 2.85
2855 5773 5.941948 TTTTGCTACAAGTCCTTAGAAGC 57.058 39.130 0.00 0.00 0.00 3.86
2856 5774 4.617253 TTGCTACAAGTCCTTAGAAGCA 57.383 40.909 6.21 6.21 0.00 3.91
2857 5775 3.926616 TGCTACAAGTCCTTAGAAGCAC 58.073 45.455 6.21 0.00 0.00 4.40
2858 5776 3.263261 GCTACAAGTCCTTAGAAGCACC 58.737 50.000 0.00 0.00 0.00 5.01
2859 5777 3.055747 GCTACAAGTCCTTAGAAGCACCT 60.056 47.826 0.00 0.00 0.00 4.00
2860 5778 3.686916 ACAAGTCCTTAGAAGCACCTC 57.313 47.619 0.00 0.00 0.00 3.85
2861 5779 2.303311 ACAAGTCCTTAGAAGCACCTCC 59.697 50.000 0.00 0.00 0.00 4.30
2862 5780 2.569404 CAAGTCCTTAGAAGCACCTCCT 59.431 50.000 0.00 0.00 0.00 3.69
2863 5781 2.909217 AGTCCTTAGAAGCACCTCCTT 58.091 47.619 0.00 0.00 0.00 3.36
2864 5782 2.569404 AGTCCTTAGAAGCACCTCCTTG 59.431 50.000 0.00 0.00 0.00 3.61
2865 5783 2.567615 GTCCTTAGAAGCACCTCCTTGA 59.432 50.000 0.00 0.00 0.00 3.02
2866 5784 2.834549 TCCTTAGAAGCACCTCCTTGAG 59.165 50.000 0.00 0.00 0.00 3.02
2867 5785 2.834549 CCTTAGAAGCACCTCCTTGAGA 59.165 50.000 0.00 0.00 0.00 3.27
2868 5786 3.118811 CCTTAGAAGCACCTCCTTGAGAG 60.119 52.174 0.00 0.00 42.83 3.20
2869 5787 2.022718 AGAAGCACCTCCTTGAGAGT 57.977 50.000 0.00 0.00 41.47 3.24
2870 5788 1.899142 AGAAGCACCTCCTTGAGAGTC 59.101 52.381 0.00 0.00 41.47 3.36
2871 5789 1.899142 GAAGCACCTCCTTGAGAGTCT 59.101 52.381 0.00 0.00 41.47 3.24
2872 5790 2.022718 AGCACCTCCTTGAGAGTCTT 57.977 50.000 0.00 0.00 41.47 3.01
2873 5791 2.334023 AGCACCTCCTTGAGAGTCTTT 58.666 47.619 0.00 0.00 41.47 2.52
2874 5792 2.708325 AGCACCTCCTTGAGAGTCTTTT 59.292 45.455 0.00 0.00 41.47 2.27
2875 5793 3.137360 AGCACCTCCTTGAGAGTCTTTTT 59.863 43.478 0.00 0.00 41.47 1.94
2876 5794 3.500299 GCACCTCCTTGAGAGTCTTTTTC 59.500 47.826 0.00 0.00 41.47 2.29
2877 5795 4.708177 CACCTCCTTGAGAGTCTTTTTCA 58.292 43.478 0.00 0.00 41.47 2.69
2878 5796 5.126067 CACCTCCTTGAGAGTCTTTTTCAA 58.874 41.667 0.00 0.00 41.47 2.69
2879 5797 5.590259 CACCTCCTTGAGAGTCTTTTTCAAA 59.410 40.000 0.00 0.00 41.47 2.69
2880 5798 6.095440 CACCTCCTTGAGAGTCTTTTTCAAAA 59.905 38.462 0.00 0.00 41.47 2.44
2881 5799 6.663523 ACCTCCTTGAGAGTCTTTTTCAAAAA 59.336 34.615 0.00 0.00 41.47 1.94
2882 5800 7.148000 ACCTCCTTGAGAGTCTTTTTCAAAAAG 60.148 37.037 15.46 15.46 41.47 2.27
2883 5801 7.148000 CCTCCTTGAGAGTCTTTTTCAAAAAGT 60.148 37.037 19.82 4.20 41.47 2.66
2884 5802 7.762382 TCCTTGAGAGTCTTTTTCAAAAAGTC 58.238 34.615 19.82 15.25 31.11 3.01
2885 5803 6.975197 CCTTGAGAGTCTTTTTCAAAAAGTCC 59.025 38.462 19.82 12.77 31.11 3.85
2886 5804 6.451064 TGAGAGTCTTTTTCAAAAAGTCCC 57.549 37.500 19.82 7.71 0.00 4.46
2887 5805 5.949354 TGAGAGTCTTTTTCAAAAAGTCCCA 59.051 36.000 19.82 7.68 0.00 4.37
2888 5806 6.095440 TGAGAGTCTTTTTCAAAAAGTCCCAG 59.905 38.462 19.82 0.00 0.00 4.45
2889 5807 6.187682 AGAGTCTTTTTCAAAAAGTCCCAGA 58.812 36.000 19.82 0.00 0.00 3.86
2890 5808 6.319911 AGAGTCTTTTTCAAAAAGTCCCAGAG 59.680 38.462 19.82 0.00 0.00 3.35
2891 5809 6.187682 AGTCTTTTTCAAAAAGTCCCAGAGA 58.812 36.000 19.82 0.00 0.00 3.10
2892 5810 6.095580 AGTCTTTTTCAAAAAGTCCCAGAGAC 59.904 38.462 19.82 9.94 46.71 3.36
2904 5822 4.823157 GTCCCAGAGACTAGAAAAAGTCC 58.177 47.826 0.00 0.00 45.86 3.85
2905 5823 4.528987 GTCCCAGAGACTAGAAAAAGTCCT 59.471 45.833 0.00 0.00 45.86 3.85
2906 5824 5.715753 GTCCCAGAGACTAGAAAAAGTCCTA 59.284 44.000 0.00 0.00 45.86 2.94
2907 5825 5.952947 TCCCAGAGACTAGAAAAAGTCCTAG 59.047 44.000 0.00 0.00 45.86 3.02
2908 5826 5.952947 CCCAGAGACTAGAAAAAGTCCTAGA 59.047 44.000 0.00 0.00 45.86 2.43
2909 5827 6.437793 CCCAGAGACTAGAAAAAGTCCTAGAA 59.562 42.308 0.00 0.00 45.86 2.10
2910 5828 7.317390 CCAGAGACTAGAAAAAGTCCTAGAAC 58.683 42.308 0.00 0.00 45.86 3.01
2911 5829 7.177744 CCAGAGACTAGAAAAAGTCCTAGAACT 59.822 40.741 0.00 0.00 45.86 3.01
2912 5830 9.233649 CAGAGACTAGAAAAAGTCCTAGAACTA 57.766 37.037 0.00 0.00 45.86 2.24
2913 5831 9.457436 AGAGACTAGAAAAAGTCCTAGAACTAG 57.543 37.037 0.00 0.00 45.86 2.57
2914 5832 9.452287 GAGACTAGAAAAAGTCCTAGAACTAGA 57.548 37.037 10.04 0.00 45.86 2.43
2915 5833 9.457436 AGACTAGAAAAAGTCCTAGAACTAGAG 57.543 37.037 10.04 1.82 45.86 2.43
2916 5834 9.452287 GACTAGAAAAAGTCCTAGAACTAGAGA 57.548 37.037 10.04 3.87 40.06 3.10
2917 5835 9.810870 ACTAGAAAAAGTCCTAGAACTAGAGAA 57.189 33.333 10.04 0.00 36.69 2.87
2919 5837 7.898918 AGAAAAAGTCCTAGAACTAGAGAACC 58.101 38.462 10.04 0.00 35.21 3.62
2920 5838 6.608539 AAAAGTCCTAGAACTAGAGAACCC 57.391 41.667 10.04 0.00 35.21 4.11
2921 5839 4.949966 AGTCCTAGAACTAGAGAACCCA 57.050 45.455 10.04 0.00 35.21 4.51
2922 5840 5.272405 AGTCCTAGAACTAGAGAACCCAA 57.728 43.478 10.04 0.00 35.21 4.12
2923 5841 5.018149 AGTCCTAGAACTAGAGAACCCAAC 58.982 45.833 10.04 0.00 35.21 3.77
2924 5842 4.771054 GTCCTAGAACTAGAGAACCCAACA 59.229 45.833 10.04 0.00 35.21 3.33
2925 5843 4.771054 TCCTAGAACTAGAGAACCCAACAC 59.229 45.833 10.04 0.00 35.21 3.32
2926 5844 4.081586 CCTAGAACTAGAGAACCCAACACC 60.082 50.000 10.04 0.00 35.21 4.16
2927 5845 3.314693 AGAACTAGAGAACCCAACACCA 58.685 45.455 0.00 0.00 0.00 4.17
2928 5846 3.071167 AGAACTAGAGAACCCAACACCAC 59.929 47.826 0.00 0.00 0.00 4.16
2929 5847 1.697982 ACTAGAGAACCCAACACCACC 59.302 52.381 0.00 0.00 0.00 4.61
2930 5848 1.978580 CTAGAGAACCCAACACCACCT 59.021 52.381 0.00 0.00 0.00 4.00
2931 5849 2.112279 AGAGAACCCAACACCACCTA 57.888 50.000 0.00 0.00 0.00 3.08
2932 5850 2.414612 AGAGAACCCAACACCACCTAA 58.585 47.619 0.00 0.00 0.00 2.69
2933 5851 2.986728 AGAGAACCCAACACCACCTAAT 59.013 45.455 0.00 0.00 0.00 1.73
2934 5852 3.397955 AGAGAACCCAACACCACCTAATT 59.602 43.478 0.00 0.00 0.00 1.40
2935 5853 3.496331 AGAACCCAACACCACCTAATTG 58.504 45.455 0.00 0.00 0.00 2.32
2936 5854 2.302587 ACCCAACACCACCTAATTGG 57.697 50.000 0.00 0.00 43.04 3.16
2938 5856 1.555967 CCAACACCACCTAATTGGGG 58.444 55.000 13.04 5.33 46.71 4.96
2944 5862 4.417426 CACCACCTAATTGGGGTACTAG 57.583 50.000 13.04 0.00 41.49 2.57
2945 5863 2.775960 ACCACCTAATTGGGGTACTAGC 59.224 50.000 13.04 0.00 41.49 3.42
2946 5864 3.046374 CCACCTAATTGGGGTACTAGCT 58.954 50.000 13.04 0.00 37.60 3.32
2947 5865 4.228824 CCACCTAATTGGGGTACTAGCTA 58.771 47.826 13.04 0.00 37.60 3.32
2948 5866 4.040095 CCACCTAATTGGGGTACTAGCTAC 59.960 50.000 13.04 0.00 37.60 3.58
2949 5867 4.900054 CACCTAATTGGGGTACTAGCTACT 59.100 45.833 13.04 0.00 41.11 2.57
2950 5868 6.073314 CACCTAATTGGGGTACTAGCTACTA 58.927 44.000 13.04 0.00 41.11 1.82
2951 5869 6.015603 CACCTAATTGGGGTACTAGCTACTAC 60.016 46.154 13.04 0.00 41.11 2.73
2952 5870 6.073314 CCTAATTGGGGTACTAGCTACTACA 58.927 44.000 11.27 0.00 0.00 2.74
2953 5871 6.552350 CCTAATTGGGGTACTAGCTACTACAA 59.448 42.308 11.27 5.57 0.00 2.41
2954 5872 6.879367 AATTGGGGTACTAGCTACTACAAA 57.121 37.500 11.27 4.78 30.28 2.83
2973 5891 4.621034 ACAAAATTAAGCGCCGAATTGAAG 59.379 37.500 15.56 11.49 0.00 3.02
2976 5894 0.250793 TAAGCGCCGAATTGAAGGGA 59.749 50.000 2.29 0.00 0.00 4.20
3019 5949 4.283722 TCCTTTCCTACTGTTTCTCTGTCC 59.716 45.833 0.00 0.00 0.00 4.02
3135 6071 8.485591 GCAAATGCTTAATTATGATCTTCTTGC 58.514 33.333 2.66 0.00 38.21 4.01
3183 6127 5.719173 TGCAATTAGCTGAAATGGGTTAAC 58.281 37.500 0.00 0.00 45.94 2.01
3979 6923 4.492160 GACGATGACTCCGCCGCA 62.492 66.667 0.00 0.00 0.00 5.69
4107 7051 3.592546 TGGCATTGGCAGCTTGATA 57.407 47.368 9.11 0.00 43.71 2.15
4214 7158 8.592809 GGGCCATTTCATTCATATTTATTACCA 58.407 33.333 4.39 0.00 0.00 3.25
4216 7160 9.128107 GCCATTTCATTCATATTTATTACCACG 57.872 33.333 0.00 0.00 0.00 4.94
4367 7313 2.763448 AGACATCCTGGAGTTAGAGTGC 59.237 50.000 1.52 0.00 0.00 4.40
4524 7472 0.179163 GCTTGTAAAGGGCACGATGC 60.179 55.000 0.00 0.00 46.35 3.91
4536 7484 1.406341 GCACGATGCTGTACCCCTTTA 60.406 52.381 0.00 0.00 40.96 1.85
4540 7488 2.936498 CGATGCTGTACCCCTTTACTTG 59.064 50.000 0.00 0.00 0.00 3.16
4574 7522 1.485294 TAGGGTTTCTGGCGCCTCAA 61.485 55.000 29.70 17.26 0.00 3.02
4605 7553 1.663173 GCCGGTCTAGCTCATCTCC 59.337 63.158 1.90 0.00 0.00 3.71
4607 7555 1.698506 CCGGTCTAGCTCATCTCCTT 58.301 55.000 0.00 0.00 0.00 3.36
4608 7556 2.865079 CCGGTCTAGCTCATCTCCTTA 58.135 52.381 0.00 0.00 0.00 2.69
4609 7557 3.426615 CCGGTCTAGCTCATCTCCTTAT 58.573 50.000 0.00 0.00 0.00 1.73
4611 7559 3.192422 CGGTCTAGCTCATCTCCTTATGG 59.808 52.174 0.00 0.00 0.00 2.74
4612 7560 4.156477 GGTCTAGCTCATCTCCTTATGGT 58.844 47.826 0.00 0.00 34.23 3.55
4613 7561 4.219725 GGTCTAGCTCATCTCCTTATGGTC 59.780 50.000 0.00 0.00 34.23 4.02
4688 7636 8.890124 TTTTAAGTTTTATTAGGGTTTGTGGC 57.110 30.769 0.00 0.00 0.00 5.01
4689 7637 7.842887 TTAAGTTTTATTAGGGTTTGTGGCT 57.157 32.000 0.00 0.00 0.00 4.75
4690 7638 6.740944 AAGTTTTATTAGGGTTTGTGGCTT 57.259 33.333 0.00 0.00 0.00 4.35
4691 7639 6.096673 AGTTTTATTAGGGTTTGTGGCTTG 57.903 37.500 0.00 0.00 0.00 4.01
4692 7640 4.529109 TTTATTAGGGTTTGTGGCTTGC 57.471 40.909 0.00 0.00 0.00 4.01
4693 7641 2.309136 ATTAGGGTTTGTGGCTTGCT 57.691 45.000 0.00 0.00 0.00 3.91
4694 7642 2.080654 TTAGGGTTTGTGGCTTGCTT 57.919 45.000 0.00 0.00 0.00 3.91
4695 7643 2.961531 TAGGGTTTGTGGCTTGCTTA 57.038 45.000 0.00 0.00 0.00 3.09
4696 7644 2.080654 AGGGTTTGTGGCTTGCTTAA 57.919 45.000 0.00 0.00 0.00 1.85
4697 7645 2.393646 AGGGTTTGTGGCTTGCTTAAA 58.606 42.857 0.00 0.00 0.00 1.52
4698 7646 2.365293 AGGGTTTGTGGCTTGCTTAAAG 59.635 45.455 0.00 0.00 39.07 1.85
4699 7647 2.364002 GGGTTTGTGGCTTGCTTAAAGA 59.636 45.455 0.00 0.00 38.24 2.52
4700 7648 3.552890 GGGTTTGTGGCTTGCTTAAAGAG 60.553 47.826 0.00 0.00 38.24 2.85
4701 7649 3.552890 GGTTTGTGGCTTGCTTAAAGAGG 60.553 47.826 0.00 0.00 38.24 3.69
4702 7650 2.656947 TGTGGCTTGCTTAAAGAGGT 57.343 45.000 0.00 0.00 38.24 3.85
4703 7651 3.780804 TGTGGCTTGCTTAAAGAGGTA 57.219 42.857 0.00 0.00 38.24 3.08
4704 7652 3.674997 TGTGGCTTGCTTAAAGAGGTAG 58.325 45.455 0.00 0.00 38.24 3.18
4705 7653 3.010420 GTGGCTTGCTTAAAGAGGTAGG 58.990 50.000 0.00 0.00 38.24 3.18
4706 7654 2.026262 TGGCTTGCTTAAAGAGGTAGGG 60.026 50.000 0.00 0.00 38.24 3.53
4707 7655 2.026169 GGCTTGCTTAAAGAGGTAGGGT 60.026 50.000 0.00 0.00 38.24 4.34
4708 7656 3.010420 GCTTGCTTAAAGAGGTAGGGTG 58.990 50.000 0.00 0.00 38.24 4.61
4709 7657 3.307480 GCTTGCTTAAAGAGGTAGGGTGA 60.307 47.826 0.00 0.00 38.24 4.02
4710 7658 4.626529 GCTTGCTTAAAGAGGTAGGGTGAT 60.627 45.833 0.00 0.00 38.24 3.06
4711 7659 4.487714 TGCTTAAAGAGGTAGGGTGATG 57.512 45.455 0.00 0.00 0.00 3.07
4716 7664 0.417841 AGAGGTAGGGTGATGGTGGT 59.582 55.000 0.00 0.00 0.00 4.16
4734 7682 5.945784 TGGTGGTTCTGAAGATGAAATAAGG 59.054 40.000 0.00 0.00 0.00 2.69
4737 7685 7.362142 GGTGGTTCTGAAGATGAAATAAGGTTC 60.362 40.741 0.00 0.00 0.00 3.62
4739 7687 7.607991 TGGTTCTGAAGATGAAATAAGGTTCTC 59.392 37.037 0.00 0.00 0.00 2.87
4750 7698 7.490000 TGAAATAAGGTTCTCCTCGTCTATTC 58.510 38.462 0.00 0.00 44.35 1.75
4765 7713 4.688021 GTCTATTCCAGTGGTGCTTCTAG 58.312 47.826 9.54 3.15 0.00 2.43
4775 7723 1.565305 GTGCTTCTAGCGTCATCAGG 58.435 55.000 0.00 0.00 46.26 3.86
4785 7733 3.083349 TCATCAGGGGGTCTGCGG 61.083 66.667 0.00 0.00 43.06 5.69
4787 7735 2.765807 ATCAGGGGGTCTGCGGAG 60.766 66.667 0.00 0.00 43.06 4.63
4808 7756 4.003648 AGGTTTGTCTTCGGCTAATCTTG 58.996 43.478 0.00 0.00 0.00 3.02
4823 7789 1.348064 TCTTGTGGGAATCGGTCAGT 58.652 50.000 0.00 0.00 0.00 3.41
4906 7872 4.944317 ACATCTGATCTACGTGTCTCTTCA 59.056 41.667 0.00 0.00 0.00 3.02
4909 7875 4.271291 TCTGATCTACGTGTCTCTTCATCG 59.729 45.833 0.00 0.00 0.00 3.84
4913 7879 1.136774 CGTGTCTCTTCATCGGCGA 59.863 57.895 13.87 13.87 0.00 5.54
4914 7880 0.248661 CGTGTCTCTTCATCGGCGAT 60.249 55.000 18.14 18.14 0.00 4.58
4921 7893 1.086696 CTTCATCGGCGATGGTTGTT 58.913 50.000 39.82 10.60 40.15 2.83
4925 7897 1.735018 CATCGGCGATGGTTGTTGTTA 59.265 47.619 35.72 0.00 36.51 2.41
4955 7927 6.314896 GCATTGATCCTATATGGTCTTAGCAC 59.685 42.308 0.00 0.00 37.07 4.40
4964 7936 3.232213 TGGTCTTAGCACGATGACTTC 57.768 47.619 0.00 0.00 0.00 3.01
4969 7941 3.380637 TCTTAGCACGATGACTTCCCTAC 59.619 47.826 0.00 0.00 0.00 3.18
4979 7951 7.118101 CACGATGACTTCCCTACTATCTACTAC 59.882 44.444 0.00 0.00 0.00 2.73
5021 7993 1.010046 TGAGGGAGGAGGGACAATGAT 59.990 52.381 0.00 0.00 0.00 2.45
5029 8001 0.767375 AGGGACAATGATAGCGGCAT 59.233 50.000 1.45 0.00 0.00 4.40
5032 8004 1.949525 GGACAATGATAGCGGCATGTT 59.050 47.619 1.45 0.00 0.00 2.71
5068 8040 3.438297 TTCTTGTAGTCATCGCTAGGC 57.562 47.619 0.00 0.00 0.00 3.93
5076 8048 0.945099 TCATCGCTAGGCAGTCTACG 59.055 55.000 0.00 0.00 0.00 3.51
5089 8061 3.616560 GCAGTCTACGGACATTGGAGAAA 60.617 47.826 0.00 0.00 44.36 2.52
5106 8078 4.327680 GAGAAAGCCTCCTCTTTTTAGCA 58.672 43.478 0.00 0.00 36.50 3.49
5108 8080 5.328565 AGAAAGCCTCCTCTTTTTAGCAAT 58.671 37.500 0.00 0.00 36.50 3.56
5129 8101 2.037251 TGACTACAAGTGTTGGAGCTCC 59.963 50.000 26.78 26.78 45.87 4.70
5133 8105 1.490490 ACAAGTGTTGGAGCTCCTTGA 59.510 47.619 32.28 16.17 36.79 3.02
5144 8116 2.420022 GAGCTCCTTGAAAATTAGCGCA 59.580 45.455 11.47 0.00 38.19 6.09
5183 8155 0.110486 TGACCTCCACTTTCTTGGCC 59.890 55.000 0.00 0.00 36.48 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.058428 ACCGCCCTATTTCTACCCCC 61.058 60.000 0.00 0.00 0.00 5.40
1 2 0.841961 AACCGCCCTATTTCTACCCC 59.158 55.000 0.00 0.00 0.00 4.95
2 3 2.294979 CAAACCGCCCTATTTCTACCC 58.705 52.381 0.00 0.00 0.00 3.69
3 4 2.941064 GACAAACCGCCCTATTTCTACC 59.059 50.000 0.00 0.00 0.00 3.18
4 5 3.869832 GAGACAAACCGCCCTATTTCTAC 59.130 47.826 0.00 0.00 0.00 2.59
5 6 3.118519 GGAGACAAACCGCCCTATTTCTA 60.119 47.826 0.00 0.00 0.00 2.10
6 7 2.355818 GGAGACAAACCGCCCTATTTCT 60.356 50.000 0.00 0.00 0.00 2.52
7 8 2.014857 GGAGACAAACCGCCCTATTTC 58.985 52.381 0.00 0.00 0.00 2.17
8 9 1.340697 GGGAGACAAACCGCCCTATTT 60.341 52.381 0.00 0.00 37.59 1.40
9 10 0.255033 GGGAGACAAACCGCCCTATT 59.745 55.000 0.00 0.00 37.59 1.73
10 11 1.632965 GGGGAGACAAACCGCCCTAT 61.633 60.000 0.00 0.00 40.51 2.57
11 12 2.295602 GGGGAGACAAACCGCCCTA 61.296 63.158 0.00 0.00 40.51 3.53
12 13 3.647771 GGGGAGACAAACCGCCCT 61.648 66.667 0.00 0.00 40.51 5.19
14 15 4.011517 TCGGGGAGACAAACCGCC 62.012 66.667 0.00 0.00 46.78 6.13
37 38 3.813724 CATGTCCTCCCCTGGCCC 61.814 72.222 0.00 0.00 0.00 5.80
38 39 3.813724 CCATGTCCTCCCCTGGCC 61.814 72.222 0.00 0.00 0.00 5.36
39 40 3.813724 CCCATGTCCTCCCCTGGC 61.814 72.222 0.00 0.00 0.00 4.85
40 41 3.813724 GCCCATGTCCTCCCCTGG 61.814 72.222 0.00 0.00 0.00 4.45
41 42 3.016971 TGCCCATGTCCTCCCCTG 61.017 66.667 0.00 0.00 0.00 4.45
42 43 2.693864 CTGCCCATGTCCTCCCCT 60.694 66.667 0.00 0.00 0.00 4.79
43 44 3.813724 CCTGCCCATGTCCTCCCC 61.814 72.222 0.00 0.00 0.00 4.81
44 45 4.512914 GCCTGCCCATGTCCTCCC 62.513 72.222 0.00 0.00 0.00 4.30
45 46 4.864334 CGCCTGCCCATGTCCTCC 62.864 72.222 0.00 0.00 0.00 4.30
57 58 3.709880 TATGGTCGAACGGCGCCTG 62.710 63.158 26.68 20.24 40.61 4.85
58 59 2.510064 TTTATGGTCGAACGGCGCCT 62.510 55.000 26.68 6.32 40.61 5.52
59 60 2.101835 TTTATGGTCGAACGGCGCC 61.102 57.895 19.07 19.07 40.61 6.53
60 61 1.059838 GTTTATGGTCGAACGGCGC 59.940 57.895 6.90 0.00 40.61 6.53
61 62 1.073177 AAGTTTATGGTCGAACGGCG 58.927 50.000 4.80 4.80 42.69 6.46
62 63 1.129811 CCAAGTTTATGGTCGAACGGC 59.870 52.381 0.00 0.00 35.65 5.68
63 64 1.129811 GCCAAGTTTATGGTCGAACGG 59.870 52.381 0.00 0.00 42.75 4.44
64 65 1.129811 GGCCAAGTTTATGGTCGAACG 59.870 52.381 0.00 0.00 42.75 3.95
65 66 1.471287 GGGCCAAGTTTATGGTCGAAC 59.529 52.381 4.39 0.00 46.33 3.95
66 67 1.074084 TGGGCCAAGTTTATGGTCGAA 59.926 47.619 2.13 0.00 46.33 3.71
67 68 0.693622 TGGGCCAAGTTTATGGTCGA 59.306 50.000 2.13 0.00 46.33 4.20
68 69 1.540267 TTGGGCCAAGTTTATGGTCG 58.460 50.000 16.66 0.00 46.33 4.79
69 70 2.897326 AGTTTGGGCCAAGTTTATGGTC 59.103 45.455 19.90 3.32 44.59 4.02
70 71 2.970987 AGTTTGGGCCAAGTTTATGGT 58.029 42.857 19.90 0.00 42.75 3.55
71 72 3.556843 CCAAGTTTGGGCCAAGTTTATGG 60.557 47.826 19.90 18.74 44.70 2.74
72 73 3.663025 CCAAGTTTGGGCCAAGTTTATG 58.337 45.455 19.90 14.26 44.70 1.90
85 86 0.887933 CCATTCCCGACCCAAGTTTG 59.112 55.000 0.00 0.00 0.00 2.93
86 87 0.251608 CCCATTCCCGACCCAAGTTT 60.252 55.000 0.00 0.00 0.00 2.66
87 88 1.382629 CCCATTCCCGACCCAAGTT 59.617 57.895 0.00 0.00 0.00 2.66
88 89 1.848886 GACCCATTCCCGACCCAAGT 61.849 60.000 0.00 0.00 0.00 3.16
89 90 1.077716 GACCCATTCCCGACCCAAG 60.078 63.158 0.00 0.00 0.00 3.61
90 91 2.961893 CGACCCATTCCCGACCCAA 61.962 63.158 0.00 0.00 0.00 4.12
91 92 3.395702 CGACCCATTCCCGACCCA 61.396 66.667 0.00 0.00 0.00 4.51
92 93 2.187896 TTTCGACCCATTCCCGACCC 62.188 60.000 0.00 0.00 31.60 4.46
93 94 0.743345 CTTTCGACCCATTCCCGACC 60.743 60.000 0.00 0.00 31.60 4.79
94 95 1.366854 GCTTTCGACCCATTCCCGAC 61.367 60.000 0.00 0.00 31.60 4.79
95 96 1.078708 GCTTTCGACCCATTCCCGA 60.079 57.895 0.00 0.00 0.00 5.14
96 97 2.461110 CGCTTTCGACCCATTCCCG 61.461 63.158 0.00 0.00 38.10 5.14
97 98 2.112815 CCGCTTTCGACCCATTCCC 61.113 63.158 0.00 0.00 38.10 3.97
98 99 2.112815 CCCGCTTTCGACCCATTCC 61.113 63.158 0.00 0.00 38.10 3.01
99 100 2.761195 GCCCGCTTTCGACCCATTC 61.761 63.158 0.00 0.00 38.10 2.67
100 101 2.750237 GCCCGCTTTCGACCCATT 60.750 61.111 0.00 0.00 38.10 3.16
101 102 3.976701 CTGCCCGCTTTCGACCCAT 62.977 63.158 0.00 0.00 38.10 4.00
102 103 4.697756 CTGCCCGCTTTCGACCCA 62.698 66.667 0.00 0.00 38.10 4.51
103 104 3.894547 TTCTGCCCGCTTTCGACCC 62.895 63.158 0.00 0.00 38.10 4.46
104 105 1.512156 TTTTCTGCCCGCTTTCGACC 61.512 55.000 0.00 0.00 38.10 4.79
105 106 0.385598 GTTTTCTGCCCGCTTTCGAC 60.386 55.000 0.00 0.00 38.10 4.20
106 107 1.837538 CGTTTTCTGCCCGCTTTCGA 61.838 55.000 0.00 0.00 38.10 3.71
107 108 1.440353 CGTTTTCTGCCCGCTTTCG 60.440 57.895 0.00 0.00 0.00 3.46
108 109 1.081442 CCGTTTTCTGCCCGCTTTC 60.081 57.895 0.00 0.00 0.00 2.62
109 110 0.893727 ATCCGTTTTCTGCCCGCTTT 60.894 50.000 0.00 0.00 0.00 3.51
110 111 1.303317 ATCCGTTTTCTGCCCGCTT 60.303 52.632 0.00 0.00 0.00 4.68
111 112 2.040544 CATCCGTTTTCTGCCCGCT 61.041 57.895 0.00 0.00 0.00 5.52
112 113 2.038269 TCATCCGTTTTCTGCCCGC 61.038 57.895 0.00 0.00 0.00 6.13
113 114 1.794222 GTCATCCGTTTTCTGCCCG 59.206 57.895 0.00 0.00 0.00 6.13
114 115 1.644786 CCGTCATCCGTTTTCTGCCC 61.645 60.000 0.00 0.00 33.66 5.36
115 116 0.953960 ACCGTCATCCGTTTTCTGCC 60.954 55.000 0.00 0.00 33.66 4.85
116 117 0.442699 GACCGTCATCCGTTTTCTGC 59.557 55.000 0.00 0.00 33.66 4.26
117 118 1.076332 GGACCGTCATCCGTTTTCTG 58.924 55.000 0.00 0.00 33.66 3.02
118 119 3.527434 GGACCGTCATCCGTTTTCT 57.473 52.632 0.00 0.00 33.66 2.52
125 126 1.349259 CGTCAAACGGACCGTCATCC 61.349 60.000 22.00 8.24 43.95 3.51
126 127 1.952266 GCGTCAAACGGACCGTCATC 61.952 60.000 22.00 10.29 43.95 2.92
127 128 2.025418 GCGTCAAACGGACCGTCAT 61.025 57.895 22.00 9.88 43.95 3.06
128 129 2.659244 GCGTCAAACGGACCGTCA 60.659 61.111 22.00 4.45 43.95 4.35
129 130 3.408851 GGCGTCAAACGGACCGTC 61.409 66.667 22.00 6.69 43.95 4.79
150 151 0.394352 ATAAAGCAGGCCTCCCAACG 60.394 55.000 0.00 0.00 0.00 4.10
151 152 1.393603 GATAAAGCAGGCCTCCCAAC 58.606 55.000 0.00 0.00 0.00 3.77
152 153 0.258774 GGATAAAGCAGGCCTCCCAA 59.741 55.000 0.00 0.00 0.00 4.12
153 154 1.922821 GGATAAAGCAGGCCTCCCA 59.077 57.895 0.00 0.00 0.00 4.37
154 155 1.227973 CGGATAAAGCAGGCCTCCC 60.228 63.158 0.00 0.00 0.00 4.30
155 156 0.107165 AACGGATAAAGCAGGCCTCC 60.107 55.000 0.00 0.00 0.00 4.30
156 157 1.751437 AAACGGATAAAGCAGGCCTC 58.249 50.000 0.00 0.00 0.00 4.70
157 158 2.640184 GTAAACGGATAAAGCAGGCCT 58.360 47.619 0.00 0.00 0.00 5.19
158 159 1.674441 GGTAAACGGATAAAGCAGGCC 59.326 52.381 0.00 0.00 0.00 5.19
159 160 1.674441 GGGTAAACGGATAAAGCAGGC 59.326 52.381 0.00 0.00 0.00 4.85
160 161 2.294979 GGGGTAAACGGATAAAGCAGG 58.705 52.381 0.00 0.00 0.00 4.85
161 162 2.294979 GGGGGTAAACGGATAAAGCAG 58.705 52.381 0.00 0.00 0.00 4.24
162 163 1.634459 TGGGGGTAAACGGATAAAGCA 59.366 47.619 0.00 0.00 0.00 3.91
163 164 2.423446 TGGGGGTAAACGGATAAAGC 57.577 50.000 0.00 0.00 0.00 3.51
164 165 4.707030 GTTTGGGGGTAAACGGATAAAG 57.293 45.455 0.00 0.00 31.67 1.85
172 173 2.009051 CGTATCCGTTTGGGGGTAAAC 58.991 52.381 0.00 0.00 37.23 2.01
173 174 1.065564 CCGTATCCGTTTGGGGGTAAA 60.066 52.381 0.00 0.00 36.01 2.01
174 175 0.540923 CCGTATCCGTTTGGGGGTAA 59.459 55.000 0.00 0.00 36.01 2.85
175 176 1.336632 CCCGTATCCGTTTGGGGGTA 61.337 60.000 0.00 0.00 38.03 3.69
176 177 2.672181 CCCGTATCCGTTTGGGGGT 61.672 63.158 0.00 0.00 38.03 4.95
177 178 2.191109 CCCGTATCCGTTTGGGGG 59.809 66.667 0.00 0.00 38.03 5.40
178 179 2.515290 GCCCGTATCCGTTTGGGG 60.515 66.667 0.00 0.00 42.19 4.96
179 180 2.893404 CGCCCGTATCCGTTTGGG 60.893 66.667 0.00 0.00 44.88 4.12
180 181 2.893404 CCGCCCGTATCCGTTTGG 60.893 66.667 0.00 0.00 0.00 3.28
181 182 2.169146 GTCCGCCCGTATCCGTTTG 61.169 63.158 0.00 0.00 0.00 2.93
182 183 2.185093 GTCCGCCCGTATCCGTTT 59.815 61.111 0.00 0.00 0.00 3.60
183 184 3.069946 TGTCCGCCCGTATCCGTT 61.070 61.111 0.00 0.00 0.00 4.44
184 185 3.524606 CTGTCCGCCCGTATCCGT 61.525 66.667 0.00 0.00 0.00 4.69
185 186 4.280494 CCTGTCCGCCCGTATCCG 62.280 72.222 0.00 0.00 0.00 4.18
186 187 2.207924 ATCCTGTCCGCCCGTATCC 61.208 63.158 0.00 0.00 0.00 2.59
187 188 1.006102 CATCCTGTCCGCCCGTATC 60.006 63.158 0.00 0.00 0.00 2.24
188 189 2.507854 CCATCCTGTCCGCCCGTAT 61.508 63.158 0.00 0.00 0.00 3.06
189 190 3.151710 CCATCCTGTCCGCCCGTA 61.152 66.667 0.00 0.00 0.00 4.02
193 194 4.176752 GACCCCATCCTGTCCGCC 62.177 72.222 0.00 0.00 0.00 6.13
194 195 4.530857 CGACCCCATCCTGTCCGC 62.531 72.222 0.00 0.00 0.00 5.54
195 196 4.530857 GCGACCCCATCCTGTCCG 62.531 72.222 0.00 0.00 0.00 4.79
196 197 4.530857 CGCGACCCCATCCTGTCC 62.531 72.222 0.00 0.00 0.00 4.02
207 208 4.072088 CAACTCCAACGCGCGACC 62.072 66.667 39.36 0.00 0.00 4.79
208 209 4.072088 CCAACTCCAACGCGCGAC 62.072 66.667 39.36 0.00 0.00 5.19
212 213 1.231958 TTTAGGCCAACTCCAACGCG 61.232 55.000 5.01 3.53 0.00 6.01
213 214 0.955905 TTTTAGGCCAACTCCAACGC 59.044 50.000 5.01 0.00 0.00 4.84
230 231 4.023279 TGCGATGTCATAGCAAGTGTTTTT 60.023 37.500 17.09 0.00 37.96 1.94
231 232 3.501828 TGCGATGTCATAGCAAGTGTTTT 59.498 39.130 17.09 0.00 37.96 2.43
235 236 2.274437 ACTGCGATGTCATAGCAAGTG 58.726 47.619 19.38 11.72 40.34 3.16
247 248 4.601019 AGAACAAGTTTGAAACTGCGATG 58.399 39.130 11.83 8.50 41.91 3.84
295 298 5.299531 AGAGCATGTTTAGCGAGACTATGTA 59.700 40.000 0.00 0.00 37.01 2.29
328 365 1.606668 GCCAAAGATGACGTCCAACAA 59.393 47.619 14.12 0.00 0.00 2.83
332 369 0.036388 GGAGCCAAAGATGACGTCCA 60.036 55.000 14.12 1.26 0.00 4.02
338 375 0.391661 GTCGCAGGAGCCAAAGATGA 60.392 55.000 0.00 0.00 37.52 2.92
427 464 2.165030 CCGCCGAGTAGGTCTTTCTTAA 59.835 50.000 0.00 0.00 43.70 1.85
428 465 1.747355 CCGCCGAGTAGGTCTTTCTTA 59.253 52.381 0.00 0.00 43.70 2.10
431 468 0.100861 CTCCGCCGAGTAGGTCTTTC 59.899 60.000 0.00 0.00 43.70 2.62
433 470 2.416432 GCTCCGCCGAGTAGGTCTT 61.416 63.158 3.98 0.00 43.70 3.01
434 471 2.829458 GCTCCGCCGAGTAGGTCT 60.829 66.667 3.98 0.00 43.70 3.85
436 473 2.829458 GAGCTCCGCCGAGTAGGT 60.829 66.667 0.87 0.00 43.70 3.08
438 475 2.177654 GATCGAGCTCCGCCGAGTAG 62.178 65.000 8.47 0.00 38.49 2.57
439 476 2.203167 ATCGAGCTCCGCCGAGTA 60.203 61.111 8.47 0.00 38.49 2.59
440 477 3.587933 GATCGAGCTCCGCCGAGT 61.588 66.667 8.47 0.00 38.49 4.18
441 478 4.674904 CGATCGAGCTCCGCCGAG 62.675 72.222 10.26 0.00 35.55 4.63
445 482 4.577246 AAGCCGATCGAGCTCCGC 62.577 66.667 24.73 15.51 40.49 5.54
446 483 2.354072 GAAGCCGATCGAGCTCCG 60.354 66.667 24.73 5.99 40.49 4.63
447 484 0.665972 GATGAAGCCGATCGAGCTCC 60.666 60.000 24.73 16.75 40.49 4.70
448 485 0.665972 GGATGAAGCCGATCGAGCTC 60.666 60.000 24.73 19.04 40.49 4.09
449 486 1.365633 GGATGAAGCCGATCGAGCT 59.634 57.895 18.66 19.95 44.19 4.09
450 487 1.666234 GGGATGAAGCCGATCGAGC 60.666 63.158 18.66 17.93 0.00 5.03
451 488 1.372251 CGGGATGAAGCCGATCGAG 60.372 63.158 18.66 8.00 0.00 4.04
506 555 2.800629 CGTGTTTGTGGTCGTACTCCTT 60.801 50.000 5.74 0.00 0.00 3.36
576 625 1.441311 GCCCTGCTACTGCTCTCTC 59.559 63.158 0.00 0.00 40.48 3.20
605 654 0.108138 GACCGGCTAGACATTGCACT 60.108 55.000 0.00 0.00 0.00 4.40
622 671 4.688413 GGATTATTTGATGAGGCTCTCGAC 59.312 45.833 16.72 5.13 32.35 4.20
638 688 3.308401 GCTGGGGTTTGGATGGATTATT 58.692 45.455 0.00 0.00 0.00 1.40
639 689 2.247111 TGCTGGGGTTTGGATGGATTAT 59.753 45.455 0.00 0.00 0.00 1.28
656 706 3.060615 GACCTGGCTGGCTTGCTG 61.061 66.667 10.71 0.00 40.22 4.41
657 707 3.573229 TGACCTGGCTGGCTTGCT 61.573 61.111 10.71 0.00 40.22 3.91
658 708 3.368571 GTGACCTGGCTGGCTTGC 61.369 66.667 10.71 0.00 40.22 4.01
660 710 4.335647 CCGTGACCTGGCTGGCTT 62.336 66.667 10.71 0.00 40.22 4.35
697 747 3.557264 GGAAAAGAAGAGAAAGGCCGAGA 60.557 47.826 0.00 0.00 0.00 4.04
782 833 3.712907 GGGGTGCCGGTTCTGCTA 61.713 66.667 1.90 0.00 0.00 3.49
1052 3894 3.358076 CTCCTCCTCGGTCGTTGCC 62.358 68.421 0.00 0.00 0.00 4.52
1053 3895 2.182030 CTCCTCCTCGGTCGTTGC 59.818 66.667 0.00 0.00 0.00 4.17
1054 3896 1.658686 CCTCTCCTCCTCGGTCGTTG 61.659 65.000 0.00 0.00 0.00 4.10
1055 3897 1.378778 CCTCTCCTCCTCGGTCGTT 60.379 63.158 0.00 0.00 0.00 3.85
1056 3898 1.637724 ATCCTCTCCTCCTCGGTCGT 61.638 60.000 0.00 0.00 0.00 4.34
1057 3899 0.397187 TATCCTCTCCTCCTCGGTCG 59.603 60.000 0.00 0.00 0.00 4.79
1058 3900 2.660670 TTATCCTCTCCTCCTCGGTC 57.339 55.000 0.00 0.00 0.00 4.79
1430 4275 0.802494 GGTGATAACTTGGCACGGTG 59.198 55.000 3.15 3.15 33.48 4.94
1434 4279 1.135689 CGCTTGGTGATAACTTGGCAC 60.136 52.381 0.00 0.00 0.00 5.01
1435 4280 1.164411 CGCTTGGTGATAACTTGGCA 58.836 50.000 0.00 0.00 0.00 4.92
1437 4282 0.451783 GCCGCTTGGTGATAACTTGG 59.548 55.000 0.00 0.00 34.16 3.61
1438 4283 0.451783 GGCCGCTTGGTGATAACTTG 59.548 55.000 0.00 0.00 34.16 3.16
1440 4285 0.676782 GTGGCCGCTTGGTGATAACT 60.677 55.000 9.68 0.00 34.16 2.24
1441 4286 1.654023 GGTGGCCGCTTGGTGATAAC 61.654 60.000 17.49 0.00 34.16 1.89
1442 4287 1.377987 GGTGGCCGCTTGGTGATAA 60.378 57.895 17.49 0.00 34.16 1.75
1443 4288 2.270850 GGTGGCCGCTTGGTGATA 59.729 61.111 17.49 0.00 34.16 2.15
1444 4289 4.740822 GGGTGGCCGCTTGGTGAT 62.741 66.667 17.49 0.00 34.16 3.06
1448 4293 4.351054 AAGAGGGTGGCCGCTTGG 62.351 66.667 17.49 0.00 33.35 3.61
1449 4294 2.747855 GAAGAGGGTGGCCGCTTG 60.748 66.667 17.49 0.00 33.35 4.01
1450 4295 4.035102 GGAAGAGGGTGGCCGCTT 62.035 66.667 17.49 4.76 33.35 4.68
1452 4297 4.475135 GAGGAAGAGGGTGGCCGC 62.475 72.222 8.12 8.12 0.00 6.53
1455 4300 3.378399 GAGCGAGGAAGAGGGTGGC 62.378 68.421 0.00 0.00 0.00 5.01
1499 4344 0.108898 AAGAGCAGTGACTAGCAGCG 60.109 55.000 9.11 0.00 0.00 5.18
1510 4355 3.375922 GCGACTCTTCTAGTAAGAGCAGT 59.624 47.826 21.84 10.92 45.78 4.40
1552 4400 2.363018 AGACTAGCAGCCAGGCGA 60.363 61.111 5.55 0.00 39.27 5.54
1554 4402 1.143620 CTGAGACTAGCAGCCAGGC 59.856 63.158 1.84 1.84 0.00 4.85
1561 4409 0.253327 TCTCGGAGCTGAGACTAGCA 59.747 55.000 4.94 0.00 46.07 3.49
1588 4458 2.662596 GTGTCCCCGCATGTCAGA 59.337 61.111 0.00 0.00 0.00 3.27
1659 4529 6.575162 AAGCTACAAAAACTGTCTAATGGG 57.425 37.500 0.00 0.00 39.64 4.00
1676 4546 8.833493 TGACTTTAAGTTAAGGTTCAAAGCTAC 58.167 33.333 11.28 0.00 35.34 3.58
1750 4629 4.195225 AGTTAGACCTAAGTGCAGCTTC 57.805 45.455 5.04 0.00 38.57 3.86
1764 4643 5.009210 AGGAGATGCGATCAGTTAGTTAGAC 59.991 44.000 0.00 0.00 0.00 2.59
1779 4658 2.972625 TGTTTTGTAGGAGGAGATGCG 58.027 47.619 0.00 0.00 0.00 4.73
1826 4710 7.573627 ACTGCTGTTTTAAGAATAGACGTTTC 58.426 34.615 0.00 0.00 0.00 2.78
1932 4816 4.801221 GCGGCTTTTCTGCGAGCG 62.801 66.667 0.00 0.00 39.78 5.03
2007 4891 1.053424 TCCACCAGTCACCAACTACC 58.947 55.000 0.00 0.00 36.07 3.18
2009 4893 1.628340 CCATCCACCAGTCACCAACTA 59.372 52.381 0.00 0.00 36.07 2.24
2016 4900 1.497309 GGAACCCCATCCACCAGTCA 61.497 60.000 0.00 0.00 39.42 3.41
2017 4901 1.303282 GGAACCCCATCCACCAGTC 59.697 63.158 0.00 0.00 39.42 3.51
2018 4902 2.602676 CGGAACCCCATCCACCAGT 61.603 63.158 0.00 0.00 39.61 4.00
2019 4903 2.272146 CGGAACCCCATCCACCAG 59.728 66.667 0.00 0.00 39.61 4.00
2047 4931 3.122369 CCATGGATGGGAGCTTTCC 57.878 57.895 5.56 0.00 44.31 3.13
2089 4981 1.838112 TTGATTAGTGGCTTGGGCAG 58.162 50.000 0.00 0.00 39.19 4.85
2090 4982 2.170166 CTTTGATTAGTGGCTTGGGCA 58.830 47.619 0.00 0.00 40.87 5.36
2127 5019 5.760253 CCCATATTTGCTTGGTAGAGTACTG 59.240 44.000 0.00 0.00 0.00 2.74
2128 5020 5.687706 GCCCATATTTGCTTGGTAGAGTACT 60.688 44.000 0.00 0.00 0.00 2.73
2183 5075 7.359014 CGACATTATCATCTGTTGATAGCAGTG 60.359 40.741 8.09 8.59 45.70 3.66
2197 5089 3.133691 TCAGCCAAGCGACATTATCATC 58.866 45.455 0.00 0.00 0.00 2.92
2319 5215 4.840288 CCGGCATGTGCATGTGCG 62.840 66.667 16.78 12.76 45.83 5.34
2396 5304 2.380410 GGCGACCGTTGTGCACTAG 61.380 63.158 19.41 8.98 0.00 2.57
2517 5425 2.040043 AGATCCAGCCTGGGGAGG 60.040 66.667 11.68 0.00 38.32 4.30
2547 5455 8.660295 TCTATCACTCCAAGGTTTAAACTAGA 57.340 34.615 17.50 9.66 0.00 2.43
2590 5498 1.598130 GCACGCTCTCCACTTGGTT 60.598 57.895 0.00 0.00 36.34 3.67
2591 5499 2.031163 GCACGCTCTCCACTTGGT 59.969 61.111 0.00 0.00 36.34 3.67
2592 5500 1.376424 ATGCACGCTCTCCACTTGG 60.376 57.895 0.00 0.00 0.00 3.61
2593 5501 0.952497 ACATGCACGCTCTCCACTTG 60.952 55.000 0.00 0.00 0.00 3.16
2595 5503 0.952497 CAACATGCACGCTCTCCACT 60.952 55.000 0.00 0.00 0.00 4.00
2596 5504 1.499056 CAACATGCACGCTCTCCAC 59.501 57.895 0.00 0.00 0.00 4.02
2597 5505 2.327343 GCAACATGCACGCTCTCCA 61.327 57.895 0.00 0.00 44.26 3.86
2598 5506 2.482374 GCAACATGCACGCTCTCC 59.518 61.111 0.00 0.00 44.26 3.71
2608 5516 0.110056 GACAGCAAGTCGGCAACATG 60.110 55.000 0.00 0.00 37.53 3.21
2617 5528 1.852942 TGTTGACTCGACAGCAAGTC 58.147 50.000 0.00 0.00 44.02 3.01
2647 5559 4.472691 TCAGAAAGACAACAATGAAGCG 57.527 40.909 0.00 0.00 0.00 4.68
2656 5568 3.149196 TGGCCTCAATCAGAAAGACAAC 58.851 45.455 3.32 0.00 0.00 3.32
2747 5665 1.533033 CCTGGAACCAAACACCCCC 60.533 63.158 0.00 0.00 0.00 5.40
2748 5666 1.533033 CCCTGGAACCAAACACCCC 60.533 63.158 0.00 0.00 0.00 4.95
2751 5669 2.067365 AAGTCCCTGGAACCAAACAC 57.933 50.000 0.00 0.00 0.00 3.32
2752 5670 2.838637 AAAGTCCCTGGAACCAAACA 57.161 45.000 0.00 0.00 0.00 2.83
2773 5691 7.974504 AGGGACTTTTTCTAGTCTCAATACAA 58.025 34.615 6.44 0.00 46.11 2.41
2775 5693 7.707464 GCTAGGGACTTTTTCTAGTCTCAATAC 59.293 40.741 6.44 0.00 46.11 1.89
2776 5694 7.399191 TGCTAGGGACTTTTTCTAGTCTCAATA 59.601 37.037 6.44 0.00 46.11 1.90
2777 5695 6.213600 TGCTAGGGACTTTTTCTAGTCTCAAT 59.786 38.462 6.44 0.00 46.11 2.57
2778 5696 5.542635 TGCTAGGGACTTTTTCTAGTCTCAA 59.457 40.000 6.44 0.00 46.11 3.02
2779 5697 5.084519 TGCTAGGGACTTTTTCTAGTCTCA 58.915 41.667 6.44 0.00 46.11 3.27
2780 5698 5.662674 TGCTAGGGACTTTTTCTAGTCTC 57.337 43.478 0.00 0.00 44.42 3.36
2782 5700 5.411977 GGTTTGCTAGGGACTTTTTCTAGTC 59.588 44.000 0.00 0.00 43.05 2.59
2783 5701 5.163131 TGGTTTGCTAGGGACTTTTTCTAGT 60.163 40.000 0.00 0.00 41.75 2.57
2785 5703 5.313280 TGGTTTGCTAGGGACTTTTTCTA 57.687 39.130 0.00 0.00 41.75 2.10
2786 5704 4.178956 TGGTTTGCTAGGGACTTTTTCT 57.821 40.909 0.00 0.00 41.75 2.52
2787 5705 4.929819 TTGGTTTGCTAGGGACTTTTTC 57.070 40.909 0.00 0.00 41.75 2.29
2790 5708 3.637769 TGTTTGGTTTGCTAGGGACTTT 58.362 40.909 0.00 0.00 41.75 2.66
2791 5709 3.306472 TGTTTGGTTTGCTAGGGACTT 57.694 42.857 0.00 0.00 41.75 3.01
2792 5710 3.157087 CATGTTTGGTTTGCTAGGGACT 58.843 45.455 0.00 0.00 46.37 3.85
2793 5711 2.231235 CCATGTTTGGTTTGCTAGGGAC 59.769 50.000 0.00 0.00 38.30 4.46
2794 5712 2.524306 CCATGTTTGGTTTGCTAGGGA 58.476 47.619 0.00 0.00 38.30 4.20
2830 5748 6.017026 GCTTCTAAGGACTTGTAGCAAAAAGT 60.017 38.462 0.00 0.00 39.31 2.66
2831 5749 6.017109 TGCTTCTAAGGACTTGTAGCAAAAAG 60.017 38.462 12.15 0.00 0.00 2.27
2832 5750 5.825679 TGCTTCTAAGGACTTGTAGCAAAAA 59.174 36.000 12.15 0.00 0.00 1.94
2833 5751 5.238650 GTGCTTCTAAGGACTTGTAGCAAAA 59.761 40.000 14.63 0.00 43.15 2.44
2834 5752 4.755123 GTGCTTCTAAGGACTTGTAGCAAA 59.245 41.667 14.63 0.00 43.15 3.68
2835 5753 4.315803 GTGCTTCTAAGGACTTGTAGCAA 58.684 43.478 14.63 0.00 43.15 3.91
2836 5754 3.306780 GGTGCTTCTAAGGACTTGTAGCA 60.307 47.826 13.12 11.11 45.42 3.49
2837 5755 3.055747 AGGTGCTTCTAAGGACTTGTAGC 60.056 47.826 13.12 2.16 45.42 3.58
2838 5756 4.382147 GGAGGTGCTTCTAAGGACTTGTAG 60.382 50.000 13.12 0.00 45.42 2.74
2839 5757 3.514309 GGAGGTGCTTCTAAGGACTTGTA 59.486 47.826 13.12 0.00 45.42 2.41
2840 5758 2.303311 GGAGGTGCTTCTAAGGACTTGT 59.697 50.000 13.12 0.46 45.42 3.16
2841 5759 2.569404 AGGAGGTGCTTCTAAGGACTTG 59.431 50.000 13.12 0.00 45.42 3.16
2842 5760 2.909217 AGGAGGTGCTTCTAAGGACTT 58.091 47.619 13.12 6.52 45.42 3.01
2843 5761 2.569404 CAAGGAGGTGCTTCTAAGGACT 59.431 50.000 13.12 1.24 45.42 3.85
2844 5762 2.567615 TCAAGGAGGTGCTTCTAAGGAC 59.432 50.000 5.86 5.86 45.39 3.85
2845 5763 2.834549 CTCAAGGAGGTGCTTCTAAGGA 59.165 50.000 0.00 0.00 0.00 3.36
2846 5764 2.834549 TCTCAAGGAGGTGCTTCTAAGG 59.165 50.000 0.00 0.00 0.00 2.69
2847 5765 3.513515 ACTCTCAAGGAGGTGCTTCTAAG 59.486 47.826 0.00 0.00 45.83 2.18
2848 5766 3.511477 ACTCTCAAGGAGGTGCTTCTAA 58.489 45.455 0.00 0.00 45.83 2.10
2849 5767 3.093057 GACTCTCAAGGAGGTGCTTCTA 58.907 50.000 0.00 0.00 45.83 2.10
2850 5768 1.899142 GACTCTCAAGGAGGTGCTTCT 59.101 52.381 0.00 0.00 45.83 2.85
2851 5769 1.899142 AGACTCTCAAGGAGGTGCTTC 59.101 52.381 0.00 0.00 45.83 3.86
2852 5770 2.022718 AGACTCTCAAGGAGGTGCTT 57.977 50.000 0.00 0.00 45.83 3.91
2853 5771 2.022718 AAGACTCTCAAGGAGGTGCT 57.977 50.000 0.00 0.00 45.83 4.40
2854 5772 2.849294 AAAGACTCTCAAGGAGGTGC 57.151 50.000 0.00 0.00 45.83 5.01
2855 5773 4.708177 TGAAAAAGACTCTCAAGGAGGTG 58.292 43.478 0.00 0.00 45.83 4.00
2856 5774 5.373812 TTGAAAAAGACTCTCAAGGAGGT 57.626 39.130 0.00 0.00 45.83 3.85
2857 5775 6.699575 TTTTGAAAAAGACTCTCAAGGAGG 57.300 37.500 0.00 0.00 45.83 4.30
2858 5776 7.766283 ACTTTTTGAAAAAGACTCTCAAGGAG 58.234 34.615 30.55 6.52 46.87 3.69
2859 5777 7.148069 GGACTTTTTGAAAAAGACTCTCAAGGA 60.148 37.037 30.55 0.00 31.11 3.36
2860 5778 6.975197 GGACTTTTTGAAAAAGACTCTCAAGG 59.025 38.462 30.55 7.27 31.11 3.61
2861 5779 6.975197 GGGACTTTTTGAAAAAGACTCTCAAG 59.025 38.462 30.55 7.82 31.11 3.02
2862 5780 6.435904 TGGGACTTTTTGAAAAAGACTCTCAA 59.564 34.615 30.55 11.11 0.00 3.02
2863 5781 5.949354 TGGGACTTTTTGAAAAAGACTCTCA 59.051 36.000 30.55 22.55 0.00 3.27
2864 5782 6.318900 TCTGGGACTTTTTGAAAAAGACTCTC 59.681 38.462 30.55 20.65 0.00 3.20
2865 5783 6.187682 TCTGGGACTTTTTGAAAAAGACTCT 58.812 36.000 30.55 12.96 0.00 3.24
2866 5784 6.318900 TCTCTGGGACTTTTTGAAAAAGACTC 59.681 38.462 30.55 25.34 0.00 3.36
2867 5785 6.095580 GTCTCTGGGACTTTTTGAAAAAGACT 59.904 38.462 30.55 13.94 41.46 3.24
2868 5786 6.266323 GTCTCTGGGACTTTTTGAAAAAGAC 58.734 40.000 30.55 24.86 41.46 3.01
2869 5787 6.451064 GTCTCTGGGACTTTTTGAAAAAGA 57.549 37.500 30.55 12.07 41.46 2.52
2882 5800 4.528987 AGGACTTTTTCTAGTCTCTGGGAC 59.471 45.833 0.00 0.00 43.26 4.46
2883 5801 4.753186 AGGACTTTTTCTAGTCTCTGGGA 58.247 43.478 0.00 0.00 43.26 4.37
2884 5802 5.952947 TCTAGGACTTTTTCTAGTCTCTGGG 59.047 44.000 0.00 0.00 43.26 4.45
2885 5803 7.177744 AGTTCTAGGACTTTTTCTAGTCTCTGG 59.822 40.741 0.00 0.00 43.26 3.86
2886 5804 8.117813 AGTTCTAGGACTTTTTCTAGTCTCTG 57.882 38.462 0.00 0.00 43.26 3.35
2887 5805 9.457436 CTAGTTCTAGGACTTTTTCTAGTCTCT 57.543 37.037 9.53 0.00 43.26 3.10
2888 5806 9.452287 TCTAGTTCTAGGACTTTTTCTAGTCTC 57.548 37.037 9.53 0.00 43.26 3.36
2889 5807 9.457436 CTCTAGTTCTAGGACTTTTTCTAGTCT 57.543 37.037 9.53 0.00 43.26 3.24
2890 5808 9.452287 TCTCTAGTTCTAGGACTTTTTCTAGTC 57.548 37.037 9.53 0.00 43.05 2.59
2891 5809 9.810870 TTCTCTAGTTCTAGGACTTTTTCTAGT 57.189 33.333 9.53 0.00 35.65 2.57
2893 5811 9.022884 GGTTCTCTAGTTCTAGGACTTTTTCTA 57.977 37.037 9.53 0.00 0.00 2.10
2894 5812 7.038870 GGGTTCTCTAGTTCTAGGACTTTTTCT 60.039 40.741 9.53 0.00 0.00 2.52
2895 5813 7.098477 GGGTTCTCTAGTTCTAGGACTTTTTC 58.902 42.308 9.53 0.00 0.00 2.29
2896 5814 6.557633 TGGGTTCTCTAGTTCTAGGACTTTTT 59.442 38.462 9.53 0.00 0.00 1.94
2897 5815 6.082707 TGGGTTCTCTAGTTCTAGGACTTTT 58.917 40.000 9.53 0.00 0.00 2.27
2898 5816 5.652324 TGGGTTCTCTAGTTCTAGGACTTT 58.348 41.667 9.53 0.00 0.00 2.66
2899 5817 5.272405 TGGGTTCTCTAGTTCTAGGACTT 57.728 43.478 9.53 0.00 0.00 3.01
2900 5818 4.949966 TGGGTTCTCTAGTTCTAGGACT 57.050 45.455 9.15 9.15 0.00 3.85
2901 5819 4.771054 TGTTGGGTTCTCTAGTTCTAGGAC 59.229 45.833 6.96 0.00 0.00 3.85
2902 5820 4.771054 GTGTTGGGTTCTCTAGTTCTAGGA 59.229 45.833 6.96 1.76 0.00 2.94
2903 5821 4.081586 GGTGTTGGGTTCTCTAGTTCTAGG 60.082 50.000 6.96 0.00 0.00 3.02
2904 5822 4.527038 TGGTGTTGGGTTCTCTAGTTCTAG 59.473 45.833 0.83 0.83 0.00 2.43
2905 5823 4.282703 GTGGTGTTGGGTTCTCTAGTTCTA 59.717 45.833 0.00 0.00 0.00 2.10
2906 5824 3.071167 GTGGTGTTGGGTTCTCTAGTTCT 59.929 47.826 0.00 0.00 0.00 3.01
2907 5825 3.400255 GTGGTGTTGGGTTCTCTAGTTC 58.600 50.000 0.00 0.00 0.00 3.01
2908 5826 2.105993 GGTGGTGTTGGGTTCTCTAGTT 59.894 50.000 0.00 0.00 0.00 2.24
2909 5827 1.697982 GGTGGTGTTGGGTTCTCTAGT 59.302 52.381 0.00 0.00 0.00 2.57
2910 5828 1.978580 AGGTGGTGTTGGGTTCTCTAG 59.021 52.381 0.00 0.00 0.00 2.43
2911 5829 2.112279 AGGTGGTGTTGGGTTCTCTA 57.888 50.000 0.00 0.00 0.00 2.43
2912 5830 2.112279 TAGGTGGTGTTGGGTTCTCT 57.888 50.000 0.00 0.00 0.00 3.10
2913 5831 2.943036 TTAGGTGGTGTTGGGTTCTC 57.057 50.000 0.00 0.00 0.00 2.87
2914 5832 3.496331 CAATTAGGTGGTGTTGGGTTCT 58.504 45.455 0.00 0.00 0.00 3.01
2915 5833 2.560981 CCAATTAGGTGGTGTTGGGTTC 59.439 50.000 0.00 0.00 37.92 3.62
2916 5834 2.604139 CCAATTAGGTGGTGTTGGGTT 58.396 47.619 0.00 0.00 37.92 4.11
2917 5835 2.302587 CCAATTAGGTGGTGTTGGGT 57.697 50.000 0.00 0.00 37.92 4.51
2919 5837 1.203125 ACCCCAATTAGGTGGTGTTGG 60.203 52.381 0.00 0.00 38.88 3.77
2920 5838 2.302587 ACCCCAATTAGGTGGTGTTG 57.697 50.000 0.00 0.00 38.88 3.33
2921 5839 2.990998 AGTACCCCAATTAGGTGGTGTT 59.009 45.455 9.15 0.97 40.08 3.32
2922 5840 2.639487 AGTACCCCAATTAGGTGGTGT 58.361 47.619 9.15 0.00 40.08 4.16
2923 5841 3.433173 GCTAGTACCCCAATTAGGTGGTG 60.433 52.174 9.15 0.29 40.08 4.17
2924 5842 2.775960 GCTAGTACCCCAATTAGGTGGT 59.224 50.000 9.15 9.63 41.85 4.16
2925 5843 3.046374 AGCTAGTACCCCAATTAGGTGG 58.954 50.000 9.15 5.24 38.36 4.61
2926 5844 4.900054 AGTAGCTAGTACCCCAATTAGGTG 59.100 45.833 0.00 0.00 38.36 4.00
2927 5845 5.153670 AGTAGCTAGTACCCCAATTAGGT 57.846 43.478 0.00 4.83 41.64 3.08
2928 5846 6.073314 TGTAGTAGCTAGTACCCCAATTAGG 58.927 44.000 28.09 0.00 32.42 2.69
2929 5847 7.592885 TTGTAGTAGCTAGTACCCCAATTAG 57.407 40.000 28.09 0.00 32.42 1.73
2930 5848 7.976414 TTTGTAGTAGCTAGTACCCCAATTA 57.024 36.000 28.09 11.13 32.42 1.40
2931 5849 6.879367 TTTGTAGTAGCTAGTACCCCAATT 57.121 37.500 28.09 0.00 32.42 2.32
2932 5850 6.879367 TTTTGTAGTAGCTAGTACCCCAAT 57.121 37.500 28.09 0.00 32.42 3.16
2933 5851 6.879367 ATTTTGTAGTAGCTAGTACCCCAA 57.121 37.500 28.09 19.97 32.42 4.12
2934 5852 6.879367 AATTTTGTAGTAGCTAGTACCCCA 57.121 37.500 28.09 16.05 32.42 4.96
2935 5853 7.440556 GCTTAATTTTGTAGTAGCTAGTACCCC 59.559 40.741 28.09 10.87 32.42 4.95
2936 5854 7.168804 CGCTTAATTTTGTAGTAGCTAGTACCC 59.831 40.741 28.09 11.48 32.42 3.69
2937 5855 7.306457 GCGCTTAATTTTGTAGTAGCTAGTACC 60.306 40.741 28.09 15.26 32.42 3.34
2938 5856 7.306457 GGCGCTTAATTTTGTAGTAGCTAGTAC 60.306 40.741 25.71 25.71 33.69 2.73
2939 5857 6.698766 GGCGCTTAATTTTGTAGTAGCTAGTA 59.301 38.462 7.64 4.07 0.00 1.82
2940 5858 5.522824 GGCGCTTAATTTTGTAGTAGCTAGT 59.477 40.000 7.64 6.29 0.00 2.57
2941 5859 5.332355 CGGCGCTTAATTTTGTAGTAGCTAG 60.332 44.000 7.64 0.00 0.00 3.42
2942 5860 4.505191 CGGCGCTTAATTTTGTAGTAGCTA 59.495 41.667 7.64 0.00 0.00 3.32
2943 5861 3.308866 CGGCGCTTAATTTTGTAGTAGCT 59.691 43.478 7.64 0.00 0.00 3.32
2944 5862 3.307782 TCGGCGCTTAATTTTGTAGTAGC 59.692 43.478 7.64 0.00 0.00 3.58
2945 5863 5.459110 TTCGGCGCTTAATTTTGTAGTAG 57.541 39.130 7.64 0.00 0.00 2.57
2946 5864 6.092396 TCAATTCGGCGCTTAATTTTGTAGTA 59.908 34.615 7.64 0.00 0.00 1.82
2947 5865 4.957759 ATTCGGCGCTTAATTTTGTAGT 57.042 36.364 7.64 0.00 0.00 2.73
2948 5866 5.328691 TCAATTCGGCGCTTAATTTTGTAG 58.671 37.500 7.64 2.19 0.00 2.74
2949 5867 5.298197 TCAATTCGGCGCTTAATTTTGTA 57.702 34.783 7.64 0.00 0.00 2.41
2950 5868 4.167554 TCAATTCGGCGCTTAATTTTGT 57.832 36.364 7.64 0.00 0.00 2.83
2951 5869 4.031652 CCTTCAATTCGGCGCTTAATTTTG 59.968 41.667 7.64 4.97 0.00 2.44
2952 5870 4.173256 CCTTCAATTCGGCGCTTAATTTT 58.827 39.130 7.64 0.00 0.00 1.82
2953 5871 3.428862 CCCTTCAATTCGGCGCTTAATTT 60.429 43.478 7.64 0.00 0.00 1.82
2954 5872 2.099098 CCCTTCAATTCGGCGCTTAATT 59.901 45.455 7.64 10.89 0.00 1.40
3019 5949 3.181497 CCTACTTCATGCCCATGTTTTCG 60.181 47.826 8.02 0.00 39.72 3.46
3079 6009 7.614974 TGAATTGATGGGAATTCATGTACAGAA 59.385 33.333 7.93 6.00 43.98 3.02
3080 6010 7.118060 TGAATTGATGGGAATTCATGTACAGA 58.882 34.615 7.93 0.00 43.98 3.41
3135 6071 5.511025 GCGAACTAGAAAGGTTTCGTACTAG 59.489 44.000 11.18 0.00 41.92 2.57
3183 6127 3.948086 GACTCCTGCACGACGACCG 62.948 68.421 0.00 0.00 45.44 4.79
3769 6713 2.503375 GTGTAGGTGACCGACGCG 60.503 66.667 12.47 3.53 30.92 6.01
3889 6833 0.475632 TCTTCTTCTTGGGGCCCTCA 60.476 55.000 25.93 15.72 0.00 3.86
3894 6838 1.073923 TGGTCTTCTTCTTCTTGGGGC 59.926 52.381 0.00 0.00 0.00 5.80
4006 6950 4.228567 TTGTCTGCGGTGGCGTCA 62.229 61.111 0.00 0.00 44.10 4.35
4104 7048 5.989777 ACACACTAGTTCACACACCTTTATC 59.010 40.000 0.00 0.00 0.00 1.75
4107 7051 4.216411 ACACACTAGTTCACACACCTTT 57.784 40.909 0.00 0.00 0.00 3.11
4159 7103 9.710979 CTTATTTTTCGCGATAAATAACAAGGA 57.289 29.630 33.95 22.21 33.67 3.36
4214 7158 3.877508 CCTTCTTTTTCTTCAGGACACGT 59.122 43.478 0.00 0.00 0.00 4.49
4216 7160 6.451064 TTTCCTTCTTTTTCTTCAGGACAC 57.549 37.500 0.00 0.00 33.18 3.67
4524 7472 5.243207 CCTTGTACAAGTAAAGGGGTACAG 58.757 45.833 29.05 9.46 44.63 2.74
4536 7484 3.329814 CCTAAGGGTTCCCTTGTACAAGT 59.670 47.826 29.05 13.90 45.15 3.16
4596 7544 4.020662 CCCTAAGACCATAAGGAGATGAGC 60.021 50.000 0.00 0.00 38.69 4.26
4605 7553 2.508526 GCATGGCCCTAAGACCATAAG 58.491 52.381 0.00 0.00 44.97 1.73
4607 7555 0.771127 GGCATGGCCCTAAGACCATA 59.229 55.000 8.35 0.00 44.97 2.74
4609 7557 3.006677 GGCATGGCCCTAAGACCA 58.993 61.111 8.35 0.00 44.06 4.02
4667 7615 6.521162 CAAGCCACAAACCCTAATAAAACTT 58.479 36.000 0.00 0.00 0.00 2.66
4687 7635 3.010420 CACCCTACCTCTTTAAGCAAGC 58.990 50.000 0.00 0.00 31.70 4.01
4688 7636 4.553330 TCACCCTACCTCTTTAAGCAAG 57.447 45.455 0.00 0.00 0.00 4.01
4689 7637 4.324254 CCATCACCCTACCTCTTTAAGCAA 60.324 45.833 0.00 0.00 0.00 3.91
4690 7638 3.199946 CCATCACCCTACCTCTTTAAGCA 59.800 47.826 0.00 0.00 0.00 3.91
4691 7639 3.200165 ACCATCACCCTACCTCTTTAAGC 59.800 47.826 0.00 0.00 0.00 3.09
4692 7640 4.384208 CCACCATCACCCTACCTCTTTAAG 60.384 50.000 0.00 0.00 0.00 1.85
4693 7641 3.521937 CCACCATCACCCTACCTCTTTAA 59.478 47.826 0.00 0.00 0.00 1.52
4694 7642 3.112263 CCACCATCACCCTACCTCTTTA 58.888 50.000 0.00 0.00 0.00 1.85
4695 7643 1.916181 CCACCATCACCCTACCTCTTT 59.084 52.381 0.00 0.00 0.00 2.52
4696 7644 1.203440 ACCACCATCACCCTACCTCTT 60.203 52.381 0.00 0.00 0.00 2.85
4697 7645 0.417841 ACCACCATCACCCTACCTCT 59.582 55.000 0.00 0.00 0.00 3.69
4698 7646 1.209747 GAACCACCATCACCCTACCTC 59.790 57.143 0.00 0.00 0.00 3.85
4699 7647 1.203440 AGAACCACCATCACCCTACCT 60.203 52.381 0.00 0.00 0.00 3.08
4700 7648 1.065418 CAGAACCACCATCACCCTACC 60.065 57.143 0.00 0.00 0.00 3.18
4701 7649 1.906574 TCAGAACCACCATCACCCTAC 59.093 52.381 0.00 0.00 0.00 3.18
4702 7650 2.335681 TCAGAACCACCATCACCCTA 57.664 50.000 0.00 0.00 0.00 3.53
4703 7651 1.352352 CTTCAGAACCACCATCACCCT 59.648 52.381 0.00 0.00 0.00 4.34
4704 7652 1.351017 TCTTCAGAACCACCATCACCC 59.649 52.381 0.00 0.00 0.00 4.61
4705 7653 2.859165 TCTTCAGAACCACCATCACC 57.141 50.000 0.00 0.00 0.00 4.02
4706 7654 3.942829 TCATCTTCAGAACCACCATCAC 58.057 45.455 0.00 0.00 0.00 3.06
4707 7655 4.639078 TTCATCTTCAGAACCACCATCA 57.361 40.909 0.00 0.00 0.00 3.07
4708 7656 7.201767 CCTTATTTCATCTTCAGAACCACCATC 60.202 40.741 0.00 0.00 0.00 3.51
4709 7657 6.604795 CCTTATTTCATCTTCAGAACCACCAT 59.395 38.462 0.00 0.00 0.00 3.55
4710 7658 5.945784 CCTTATTTCATCTTCAGAACCACCA 59.054 40.000 0.00 0.00 0.00 4.17
4711 7659 5.946377 ACCTTATTTCATCTTCAGAACCACC 59.054 40.000 0.00 0.00 0.00 4.61
4716 7664 7.922382 AGGAGAACCTTATTTCATCTTCAGAA 58.078 34.615 0.00 0.00 45.36 3.02
4734 7682 3.181485 CCACTGGAATAGACGAGGAGAAC 60.181 52.174 0.00 0.00 0.00 3.01
4737 7685 2.099921 CACCACTGGAATAGACGAGGAG 59.900 54.545 0.71 0.00 0.00 3.69
4739 7687 1.471676 GCACCACTGGAATAGACGAGG 60.472 57.143 0.71 0.00 0.00 4.63
4750 7698 0.737715 GACGCTAGAAGCACCACTGG 60.738 60.000 0.00 0.00 42.58 4.00
4765 7713 2.187946 CAGACCCCCTGATGACGC 59.812 66.667 0.00 0.00 45.78 5.19
4775 7723 2.359975 CAAACCTCCGCAGACCCC 60.360 66.667 0.00 0.00 0.00 4.95
4785 7733 3.863041 AGATTAGCCGAAGACAAACCTC 58.137 45.455 0.00 0.00 0.00 3.85
4787 7735 3.751698 ACAAGATTAGCCGAAGACAAACC 59.248 43.478 0.00 0.00 0.00 3.27
4808 7756 1.535462 CAAACACTGACCGATTCCCAC 59.465 52.381 0.00 0.00 0.00 4.61
4823 7789 2.139917 CGGATCCACGAAAGACAAACA 58.860 47.619 13.41 0.00 35.47 2.83
4876 7842 4.160439 ACACGTAGATCAGATGTGTCCAAT 59.840 41.667 16.05 0.00 42.08 3.16
4883 7849 4.944317 TGAAGAGACACGTAGATCAGATGT 59.056 41.667 0.00 0.00 0.00 3.06
4887 7853 4.522877 CGATGAAGAGACACGTAGATCAG 58.477 47.826 0.00 0.00 0.00 2.90
4906 7872 2.102070 TAACAACAACCATCGCCGAT 57.898 45.000 0.00 0.00 0.00 4.18
4909 7875 1.816224 ACCATAACAACAACCATCGCC 59.184 47.619 0.00 0.00 0.00 5.54
4913 7879 4.282957 TCAATGCACCATAACAACAACCAT 59.717 37.500 0.00 0.00 0.00 3.55
4914 7880 3.638627 TCAATGCACCATAACAACAACCA 59.361 39.130 0.00 0.00 0.00 3.67
4921 7893 6.885918 CCATATAGGATCAATGCACCATAACA 59.114 38.462 0.00 0.00 41.22 2.41
4925 7897 5.252397 AGACCATATAGGATCAATGCACCAT 59.748 40.000 0.00 0.00 41.22 3.55
4955 7927 7.160049 TGTAGTAGATAGTAGGGAAGTCATCG 58.840 42.308 0.00 0.00 0.00 3.84
4969 7941 9.297586 TCGCACAAACTTTATTGTAGTAGATAG 57.702 33.333 0.00 0.00 41.44 2.08
4979 7951 3.059188 ACGGAGTCGCACAAACTTTATTG 60.059 43.478 0.00 0.00 29.74 1.90
5021 7993 1.463056 CAAGTCGAAAACATGCCGCTA 59.537 47.619 0.00 0.00 0.00 4.26
5029 8001 3.882888 AGAATTGGAGCAAGTCGAAAACA 59.117 39.130 0.00 0.00 42.25 2.83
5032 8004 4.488126 CAAGAATTGGAGCAAGTCGAAA 57.512 40.909 0.00 0.00 43.94 3.46
5068 8040 3.868757 TTCTCCAATGTCCGTAGACTG 57.131 47.619 0.00 0.00 43.91 3.51
5089 8061 4.013050 GTCATTGCTAAAAAGAGGAGGCT 58.987 43.478 0.00 0.00 0.00 4.58
5101 8073 5.616270 TCCAACACTTGTAGTCATTGCTAA 58.384 37.500 0.00 0.00 0.00 3.09
5106 8078 4.319177 GAGCTCCAACACTTGTAGTCATT 58.681 43.478 0.87 0.00 0.00 2.57
5108 8080 2.037251 GGAGCTCCAACACTTGTAGTCA 59.963 50.000 28.43 0.00 35.64 3.41
5129 8101 4.425577 AGACCTTGCGCTAATTTTCAAG 57.574 40.909 9.73 0.27 36.57 3.02
5133 8105 3.951663 AGGTAGACCTTGCGCTAATTTT 58.048 40.909 9.73 0.00 46.09 1.82
5162 8134 2.306847 GCCAAGAAAGTGGAGGTCAAA 58.693 47.619 0.00 0.00 41.65 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.