Multiple sequence alignment - TraesCS5D01G287300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G287300 chr5D 100.000 3347 0 0 1 3347 387096965 387100311 0.000000e+00 6181.0
1 TraesCS5D01G287300 chr5D 77.684 354 55 18 90 430 473347891 473348233 9.480000e-46 195.0
2 TraesCS5D01G287300 chr5D 78.346 254 45 6 2560 2803 527848384 527848131 4.470000e-34 156.0
3 TraesCS5D01G287300 chr5D 95.385 65 3 0 1019 1083 387250266 387250330 1.640000e-18 104.0
4 TraesCS5D01G287300 chr5D 85.507 69 9 1 2567 2635 36552726 36552659 1.670000e-08 71.3
5 TraesCS5D01G287300 chr5A 92.867 2285 101 32 88 2356 489842473 489844711 0.000000e+00 3260.0
6 TraesCS5D01G287300 chr5A 88.592 412 27 8 2840 3237 489845960 489846365 1.810000e-132 483.0
7 TraesCS5D01G287300 chr5A 78.386 731 127 24 1486 2199 489934131 489934847 2.370000e-121 446.0
8 TraesCS5D01G287300 chr5A 90.722 291 21 3 2342 2630 489844735 489845021 1.880000e-102 383.0
9 TraesCS5D01G287300 chr5A 92.982 114 8 0 3234 3347 489846332 489846445 2.070000e-37 167.0
10 TraesCS5D01G287300 chr5A 94.118 85 4 1 1 84 489840727 489840811 9.750000e-26 128.0
11 TraesCS5D01G287300 chr5A 79.048 210 23 12 2531 2724 7490634 7490838 1.260000e-24 124.0
12 TraesCS5D01G287300 chr5A 93.846 65 4 0 1019 1083 489933123 489933187 7.640000e-17 99.0
13 TraesCS5D01G287300 chr5A 100.000 29 0 0 2599 2627 68303128 68303100 2.000000e-03 54.7
14 TraesCS5D01G287300 chr5B 91.277 1777 104 32 480 2232 465254348 465256097 0.000000e+00 2375.0
15 TraesCS5D01G287300 chr5B 77.279 735 128 30 1486 2199 465824923 465825639 2.420000e-106 396.0
16 TraesCS5D01G287300 chr5B 77.352 287 42 13 2531 2803 664511035 664510758 7.480000e-32 148.0
17 TraesCS5D01G287300 chr5B 95.238 63 3 0 1019 1081 465823993 465824055 2.120000e-17 100.0
18 TraesCS5D01G287300 chr5B 76.720 189 28 11 2474 2660 454493268 454493094 1.280000e-14 91.6
19 TraesCS5D01G287300 chr6A 75.728 721 145 21 1492 2195 36859135 36858428 5.350000e-88 335.0
20 TraesCS5D01G287300 chr1D 78.025 405 52 20 2374 2770 373115486 373115861 1.560000e-53 220.0
21 TraesCS5D01G287300 chr1D 76.221 307 35 18 2374 2667 485245059 485244778 9.750000e-26 128.0
22 TraesCS5D01G287300 chr1D 74.286 280 34 24 2376 2634 487569158 487568896 2.140000e-12 84.2
23 TraesCS5D01G287300 chr1A 76.585 410 58 20 2374 2766 472549755 472550143 1.230000e-44 191.0
24 TraesCS5D01G287300 chr1A 77.540 187 20 12 2376 2555 585628936 585628765 3.560000e-15 93.5
25 TraesCS5D01G287300 chr4B 75.435 460 69 23 2373 2825 540460777 540460355 2.050000e-42 183.0
26 TraesCS5D01G287300 chr1B 75.556 405 66 19 88 461 308541143 308541545 5.740000e-38 169.0
27 TraesCS5D01G287300 chr2D 77.695 269 49 5 88 346 10304772 10305039 1.610000e-33 154.0
28 TraesCS5D01G287300 chr2D 77.273 198 38 6 1638 1833 346162330 346162522 3.530000e-20 110.0
29 TraesCS5D01G287300 chr2B 80.000 175 30 4 1660 1833 412186040 412186210 1.260000e-24 124.0
30 TraesCS5D01G287300 chr3D 85.217 115 8 8 2559 2669 606293351 606293460 3.530000e-20 110.0
31 TraesCS5D01G287300 chr2A 77.273 198 38 6 1638 1833 459929907 459930099 3.530000e-20 110.0
32 TraesCS5D01G287300 chr6D 93.846 65 4 0 1019 1083 162246544 162246480 7.640000e-17 99.0
33 TraesCS5D01G287300 chrUn 100.000 28 0 0 3198 3225 22755153 22755126 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G287300 chr5D 387096965 387100311 3346 False 6181.0 6181 100.0000 1 3347 1 chr5D.!!$F1 3346
1 TraesCS5D01G287300 chr5A 489840727 489846445 5718 False 884.2 3260 91.8562 1 3347 5 chr5A.!!$F2 3346
2 TraesCS5D01G287300 chr5A 489933123 489934847 1724 False 272.5 446 86.1160 1019 2199 2 chr5A.!!$F3 1180
3 TraesCS5D01G287300 chr5B 465254348 465256097 1749 False 2375.0 2375 91.2770 480 2232 1 chr5B.!!$F1 1752
4 TraesCS5D01G287300 chr5B 465823993 465825639 1646 False 248.0 396 86.2585 1019 2199 2 chr5B.!!$F2 1180
5 TraesCS5D01G287300 chr6A 36858428 36859135 707 True 335.0 335 75.7280 1492 2195 1 chr6A.!!$R1 703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 1833 0.107214 CCAACACACCTATGGGCGAT 60.107 55.0 0.0 0.0 35.63 4.58 F
176 1836 0.178068 ACACACCTATGGGCGATGTC 59.822 55.0 0.0 0.0 35.63 3.06 F
587 2258 0.724549 TTGTCATGTATTCGTGGCGC 59.275 50.0 0.0 0.0 37.94 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1146 2840 0.038892 CCACATGCTGAAAGTGCACC 60.039 55.0 14.63 0.0 43.59 5.01 R
1460 3755 0.248990 CAAACACAACAGCACCGCAT 60.249 50.0 0.00 0.0 0.00 4.73 R
2439 4784 0.903454 GTCCGACCAAGAGGGAAGGA 60.903 60.0 0.00 0.0 41.18 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.611654 TCTATGTAAGGTTTGGTTTTCTGTAC 57.388 34.615 0.00 0.00 0.00 2.90
41 42 5.389859 TTTCTGTACCAATTGCATTCTGG 57.610 39.130 0.00 7.50 36.24 3.86
42 43 2.754552 TCTGTACCAATTGCATTCTGGC 59.245 45.455 0.00 0.00 33.19 4.85
148 1808 0.905357 CCACCAAATCGACCTCCTCT 59.095 55.000 0.00 0.00 0.00 3.69
149 1809 1.406069 CCACCAAATCGACCTCCTCTG 60.406 57.143 0.00 0.00 0.00 3.35
173 1833 0.107214 CCAACACACCTATGGGCGAT 60.107 55.000 0.00 0.00 35.63 4.58
176 1836 0.178068 ACACACCTATGGGCGATGTC 59.822 55.000 0.00 0.00 35.63 3.06
214 1874 4.452733 ACCTAAGCCGCACCGCTC 62.453 66.667 0.00 0.00 38.44 5.03
215 1875 4.451150 CCTAAGCCGCACCGCTCA 62.451 66.667 0.00 0.00 38.44 4.26
227 1887 4.379243 CGCTCAGAACCGTGGCCT 62.379 66.667 3.32 0.00 0.00 5.19
328 1989 2.417719 GATCTCCACCGCAACCATATC 58.582 52.381 0.00 0.00 0.00 1.63
331 1992 1.891919 CCACCGCAACCATATCCCG 60.892 63.158 0.00 0.00 0.00 5.14
332 1993 1.145156 CACCGCAACCATATCCCGA 59.855 57.895 0.00 0.00 0.00 5.14
333 1994 0.880278 CACCGCAACCATATCCCGAG 60.880 60.000 0.00 0.00 0.00 4.63
361 2022 2.541994 AGGAAGGCCCTACCACCA 59.458 61.111 0.00 0.00 45.48 4.17
362 2023 1.084842 AGGAAGGCCCTACCACCAT 59.915 57.895 0.00 0.00 45.48 3.55
363 2024 0.988678 AGGAAGGCCCTACCACCATC 60.989 60.000 0.00 0.00 45.48 3.51
364 2025 1.279025 GGAAGGCCCTACCACCATCA 61.279 60.000 0.00 0.00 43.14 3.07
365 2026 0.846693 GAAGGCCCTACCACCATCAT 59.153 55.000 0.00 0.00 43.14 2.45
435 2103 2.094182 ACGGCTCAAAGCTCTAAATCGA 60.094 45.455 0.00 0.00 41.99 3.59
441 2109 5.006153 TCAAAGCTCTAAATCGAATCGGA 57.994 39.130 1.76 0.00 0.00 4.55
445 2113 3.637229 AGCTCTAAATCGAATCGGAAGGA 59.363 43.478 1.76 0.00 0.00 3.36
450 2118 4.737855 AAATCGAATCGGAAGGAAGAGA 57.262 40.909 1.76 0.00 0.00 3.10
459 2127 1.414550 GGAAGGAAGAGAATCGGGAGG 59.585 57.143 0.00 0.00 42.67 4.30
553 2224 2.582265 GAAGTGCGACGAACGTGCA 61.582 57.895 15.72 15.72 44.60 4.57
558 2229 3.749373 CGACGAACGTGCACCGAC 61.749 66.667 18.78 12.37 40.70 4.79
587 2258 0.724549 TTGTCATGTATTCGTGGCGC 59.275 50.000 0.00 0.00 37.94 6.53
622 2301 1.375908 CACGTGGTATGCAGGCAGT 60.376 57.895 7.95 0.00 0.00 4.40
644 2325 7.414436 CAGTGGAGTTGATTTTTCTTCGTTAA 58.586 34.615 0.00 0.00 0.00 2.01
894 2578 2.078849 TATAACATGATCCGCGCAGG 57.921 50.000 8.75 10.32 42.97 4.85
951 2639 2.673368 CTCGGCAATTAGACACCACTTC 59.327 50.000 0.00 0.00 0.00 3.01
968 2656 4.642885 CCACTTCCAAGTTCCAACTACAAA 59.357 41.667 0.00 0.00 38.57 2.83
1124 2818 4.903638 ATCGACTTGATGTACAAACACG 57.096 40.909 0.00 4.13 38.78 4.49
1125 2819 3.708890 TCGACTTGATGTACAAACACGT 58.291 40.909 0.00 7.41 38.78 4.49
1142 2836 4.547532 ACACGTACTCACTTGACTGATTC 58.452 43.478 0.00 0.00 0.00 2.52
1145 2839 3.921021 CGTACTCACTTGACTGATTCACC 59.079 47.826 0.00 0.00 32.26 4.02
1146 2840 3.032017 ACTCACTTGACTGATTCACCG 57.968 47.619 0.00 0.00 32.26 4.94
1418 3653 7.279981 ACGTAAGAATTAATACATCAGCTGCAA 59.720 33.333 9.47 0.00 43.62 4.08
1460 3755 4.409218 GGCCTGACGTACGTGCGA 62.409 66.667 32.30 10.23 35.59 5.10
1463 3758 2.505498 CCTGACGTACGTGCGATGC 61.505 63.158 32.30 19.60 35.59 3.91
1464 3759 2.835264 CTGACGTACGTGCGATGCG 61.835 63.158 32.30 13.05 35.59 4.73
1465 3760 3.604202 GACGTACGTGCGATGCGG 61.604 66.667 32.30 2.51 35.59 5.69
1467 3762 3.897502 CGTACGTGCGATGCGGTG 61.898 66.667 21.98 0.00 0.00 4.94
1468 3763 4.204891 GTACGTGCGATGCGGTGC 62.205 66.667 0.00 0.00 0.00 5.01
1482 3777 1.544686 CGGTGCTGTTGTGTTTGTTC 58.455 50.000 0.00 0.00 0.00 3.18
1490 3785 3.360867 TGTTGTGTTTGTTCATCAGGGT 58.639 40.909 0.00 0.00 0.00 4.34
1773 4074 4.680237 CGCGCAACCTGGACCTCA 62.680 66.667 8.75 0.00 0.00 3.86
2034 4335 2.125552 TGATCGCGTCTGCCAAGG 60.126 61.111 5.77 0.00 38.08 3.61
2272 4573 2.365617 AGTGATACCGATTGCCGAAGAT 59.634 45.455 0.00 0.00 41.76 2.40
2274 4575 2.364002 TGATACCGATTGCCGAAGATGA 59.636 45.455 0.00 0.00 41.76 2.92
2360 4703 6.951256 TGACGTCTTGATAATCTTCAACAG 57.049 37.500 17.92 0.00 32.39 3.16
2362 4705 4.631813 ACGTCTTGATAATCTTCAACAGGC 59.368 41.667 0.00 0.00 32.39 4.85
2400 4745 3.632643 TGCTATTTCTCATGTGCCTGA 57.367 42.857 0.00 0.00 0.00 3.86
2453 4798 3.260205 TCTTCATTCCTTCCCTCTTGGT 58.740 45.455 0.00 0.00 34.77 3.67
2461 4806 0.903454 TTCCCTCTTGGTCGGACCTC 60.903 60.000 26.41 3.12 39.58 3.85
2478 4823 4.441695 CGCAGGAGAAGCTCGCCA 62.442 66.667 8.23 0.00 38.94 5.69
2480 4825 2.977178 CAGGAGAAGCTCGCCAGT 59.023 61.111 8.23 0.00 38.94 4.00
2484 4829 0.739112 GGAGAAGCTCGCCAGTGAAG 60.739 60.000 0.00 0.00 36.28 3.02
2504 4849 4.487282 AGAACTAGCCCCACCATCTATA 57.513 45.455 0.00 0.00 0.00 1.31
2509 4854 5.281314 ACTAGCCCCACCATCTATATTAGG 58.719 45.833 0.00 0.00 0.00 2.69
2550 4895 4.203001 TGGCCCCATTATCTATCTTAGGGA 60.203 45.833 0.00 0.00 36.96 4.20
2556 4901 6.328672 CCCATTATCTATCTTAGGGATGGGAG 59.671 46.154 11.68 0.00 44.12 4.30
2560 4905 2.731339 ATCTTAGGGATGGGAGGAGG 57.269 55.000 0.00 0.00 32.69 4.30
2565 4910 2.042930 GGATGGGAGGAGGGGTGT 59.957 66.667 0.00 0.00 0.00 4.16
2580 4925 4.770362 TGTGGGGATCGCCGGAGA 62.770 66.667 22.58 11.31 33.83 3.71
2588 4933 2.289444 GGGATCGCCGGAGATTTTCATA 60.289 50.000 22.26 0.00 33.83 2.15
2597 4942 4.752101 CCGGAGATTTTCATAGGTGATGTC 59.248 45.833 0.00 0.00 36.84 3.06
2616 4961 2.427753 GGCTTAGAGGGATGGCCG 59.572 66.667 0.00 0.00 33.30 6.13
2634 4979 4.715523 GGGCGGTGGCTAGCAACA 62.716 66.667 23.62 7.09 39.81 3.33
2635 4980 2.671619 GGCGGTGGCTAGCAACAA 60.672 61.111 23.62 0.00 39.81 2.83
2636 4981 2.561373 GCGGTGGCTAGCAACAAC 59.439 61.111 23.62 11.51 35.83 3.32
2637 4982 2.860293 CGGTGGCTAGCAACAACG 59.140 61.111 23.62 19.28 41.70 4.10
2638 4983 2.677003 CGGTGGCTAGCAACAACGG 61.677 63.158 23.62 12.16 43.58 4.44
2639 4984 1.599797 GGTGGCTAGCAACAACGGT 60.600 57.895 23.62 0.00 0.00 4.83
2640 4985 1.574428 GTGGCTAGCAACAACGGTG 59.426 57.895 17.77 0.00 0.00 4.94
2641 4986 1.599518 TGGCTAGCAACAACGGTGG 60.600 57.895 18.24 0.00 0.00 4.61
2642 4987 2.332654 GGCTAGCAACAACGGTGGG 61.333 63.158 18.24 0.00 0.00 4.61
2643 4988 2.332654 GCTAGCAACAACGGTGGGG 61.333 63.158 10.63 0.00 0.00 4.96
2644 4989 1.674322 CTAGCAACAACGGTGGGGG 60.674 63.158 4.97 0.00 0.00 5.40
2645 4990 2.119484 CTAGCAACAACGGTGGGGGA 62.119 60.000 4.97 0.00 0.00 4.81
2646 4991 2.119484 TAGCAACAACGGTGGGGGAG 62.119 60.000 4.97 0.00 0.00 4.30
2647 4992 2.282180 CAACAACGGTGGGGGAGG 60.282 66.667 4.97 0.00 0.00 4.30
2648 4993 2.775219 AACAACGGTGGGGGAGGT 60.775 61.111 4.97 0.00 0.00 3.85
2649 4994 2.388610 AACAACGGTGGGGGAGGTT 61.389 57.895 4.97 0.00 0.00 3.50
2650 4995 2.282180 CAACGGTGGGGGAGGTTG 60.282 66.667 0.00 0.00 34.50 3.77
2651 4996 2.448931 AACGGTGGGGGAGGTTGA 60.449 61.111 0.00 0.00 0.00 3.18
2652 4997 2.526046 AACGGTGGGGGAGGTTGAG 61.526 63.158 0.00 0.00 0.00 3.02
2653 4998 3.717294 CGGTGGGGGAGGTTGAGG 61.717 72.222 0.00 0.00 0.00 3.86
2654 4999 3.339093 GGTGGGGGAGGTTGAGGG 61.339 72.222 0.00 0.00 0.00 4.30
2655 5000 3.339093 GTGGGGGAGGTTGAGGGG 61.339 72.222 0.00 0.00 0.00 4.79
2701 5131 2.434884 CGTAGGTGGTGCAGGCTG 60.435 66.667 10.94 10.94 0.00 4.85
2702 5132 2.045926 GTAGGTGGTGCAGGCTGG 60.046 66.667 17.64 0.00 0.00 4.85
2703 5133 4.033776 TAGGTGGTGCAGGCTGGC 62.034 66.667 17.64 9.25 0.00 4.85
2708 5138 4.715523 GGTGCAGGCTGGCGGTTA 62.716 66.667 17.64 0.00 36.28 2.85
2709 5139 3.127533 GTGCAGGCTGGCGGTTAG 61.128 66.667 17.64 0.00 36.28 2.34
2710 5140 4.408821 TGCAGGCTGGCGGTTAGG 62.409 66.667 17.64 0.00 36.28 2.69
2712 5142 3.717294 CAGGCTGGCGGTTAGGGT 61.717 66.667 6.61 0.00 0.00 4.34
2713 5143 3.717294 AGGCTGGCGGTTAGGGTG 61.717 66.667 0.00 0.00 0.00 4.61
2714 5144 4.796495 GGCTGGCGGTTAGGGTGG 62.796 72.222 0.00 0.00 0.00 4.61
2715 5145 4.796495 GCTGGCGGTTAGGGTGGG 62.796 72.222 0.00 0.00 0.00 4.61
2724 5154 1.999002 TTAGGGTGGGGTAGGCTGC 60.999 63.158 0.00 0.00 0.00 5.25
2725 5155 2.774322 TTAGGGTGGGGTAGGCTGCA 62.774 60.000 4.64 0.00 0.00 4.41
2730 5160 1.619363 TGGGGTAGGCTGCAGGATT 60.619 57.895 17.12 0.00 0.00 3.01
2747 5177 2.482494 GATTGGGAGGAGGAAGAAGGA 58.518 52.381 0.00 0.00 0.00 3.36
2748 5178 2.433444 TTGGGAGGAGGAAGAAGGAA 57.567 50.000 0.00 0.00 0.00 3.36
2749 5179 1.958288 TGGGAGGAGGAAGAAGGAAG 58.042 55.000 0.00 0.00 0.00 3.46
2750 5180 1.208706 GGGAGGAGGAAGAAGGAAGG 58.791 60.000 0.00 0.00 0.00 3.46
2768 5198 1.827969 AGGGAGGAAGACGATGAACAG 59.172 52.381 0.00 0.00 0.00 3.16
2777 5207 2.031068 AGACGATGAACAGTCTCGATCG 59.969 50.000 9.36 9.36 43.52 3.69
2801 5231 4.981806 TTTGGACCATTGGATCGAAATC 57.018 40.909 10.37 0.00 0.00 2.17
2805 5235 3.561725 GGACCATTGGATCGAAATCTGAC 59.438 47.826 10.37 0.00 32.12 3.51
2807 5237 4.588899 ACCATTGGATCGAAATCTGACAA 58.411 39.130 10.37 0.00 32.12 3.18
2883 5989 2.591923 TGCTTTTGGATGTGGTGCTTA 58.408 42.857 0.00 0.00 0.00 3.09
2935 6041 7.209471 TCATTTATTCGTTGCCACTTAAGTT 57.791 32.000 5.07 0.00 0.00 2.66
2936 6042 8.325421 TCATTTATTCGTTGCCACTTAAGTTA 57.675 30.769 5.07 0.00 0.00 2.24
2937 6043 8.784994 TCATTTATTCGTTGCCACTTAAGTTAA 58.215 29.630 5.07 0.00 0.00 2.01
2938 6044 9.061610 CATTTATTCGTTGCCACTTAAGTTAAG 57.938 33.333 19.07 19.07 41.51 1.85
2940 6046 8.830201 TTATTCGTTGCCACTTAAGTTAAGTA 57.170 30.769 24.33 9.77 46.66 2.24
3090 6196 4.329392 AGGGTTGGTCTGTTAATTAACGG 58.671 43.478 25.24 25.24 42.50 4.44
3164 6277 3.251763 GCGCGCGCACATACACTA 61.252 61.111 46.11 0.00 41.49 2.74
3165 6278 2.585869 GCGCGCGCACATACACTAT 61.586 57.895 46.11 0.00 41.49 2.12
3200 6313 1.192757 CGTCGAGGTAGCAGATAGACG 59.807 57.143 11.07 11.07 42.65 4.18
3206 6319 2.809119 AGGTAGCAGATAGACGTCATCG 59.191 50.000 19.50 14.13 43.34 3.84
3219 6332 3.412981 CGTCATCGTCATCACTTCTCT 57.587 47.619 0.00 0.00 0.00 3.10
3220 6333 3.358775 CGTCATCGTCATCACTTCTCTC 58.641 50.000 0.00 0.00 0.00 3.20
3221 6334 3.701241 GTCATCGTCATCACTTCTCTCC 58.299 50.000 0.00 0.00 0.00 3.71
3222 6335 3.129462 GTCATCGTCATCACTTCTCTCCA 59.871 47.826 0.00 0.00 0.00 3.86
3223 6336 3.763897 TCATCGTCATCACTTCTCTCCAA 59.236 43.478 0.00 0.00 0.00 3.53
3224 6337 3.857549 TCGTCATCACTTCTCTCCAAG 57.142 47.619 0.00 0.00 0.00 3.61
3225 6338 2.094494 TCGTCATCACTTCTCTCCAAGC 60.094 50.000 0.00 0.00 0.00 4.01
3226 6339 2.353109 CGTCATCACTTCTCTCCAAGCA 60.353 50.000 0.00 0.00 0.00 3.91
3227 6340 2.999355 GTCATCACTTCTCTCCAAGCAC 59.001 50.000 0.00 0.00 0.00 4.40
3228 6341 2.634453 TCATCACTTCTCTCCAAGCACA 59.366 45.455 0.00 0.00 0.00 4.57
3229 6342 3.262660 TCATCACTTCTCTCCAAGCACAT 59.737 43.478 0.00 0.00 0.00 3.21
3230 6343 3.049708 TCACTTCTCTCCAAGCACATG 57.950 47.619 0.00 0.00 0.00 3.21
3231 6344 2.082231 CACTTCTCTCCAAGCACATGG 58.918 52.381 0.00 0.00 42.12 3.66
3232 6345 1.701847 ACTTCTCTCCAAGCACATGGT 59.298 47.619 0.00 0.00 41.46 3.55
3233 6346 2.906389 ACTTCTCTCCAAGCACATGGTA 59.094 45.455 0.00 0.00 41.46 3.25
3234 6347 3.521126 ACTTCTCTCCAAGCACATGGTAT 59.479 43.478 0.00 0.00 41.46 2.73
3235 6348 3.827008 TCTCTCCAAGCACATGGTATC 57.173 47.619 0.00 0.00 41.46 2.24
3241 6354 2.545526 CCAAGCACATGGTATCGTCATC 59.454 50.000 0.00 0.00 35.65 2.92
3258 6371 0.035317 ATCACTTCTCGCCAAGCACA 59.965 50.000 0.00 0.00 0.00 4.57
3262 6375 0.957395 CTTCTCGCCAAGCACATGGT 60.957 55.000 0.00 0.00 42.75 3.55
3267 6380 1.089481 CGCCAAGCACATGGTATCGT 61.089 55.000 0.00 0.00 42.75 3.73
3270 6383 2.564771 CCAAGCACATGGTATCGTCAT 58.435 47.619 0.00 0.00 35.65 3.06
3301 6414 1.073768 GAGCAAGCGAGGTCGACTTC 61.074 60.000 17.14 17.14 43.02 3.01
3313 6426 0.927537 TCGACTTCGTTGCACACAAG 59.072 50.000 0.00 0.00 40.80 3.16
3336 6449 1.600663 CGAACCTAGCTCGCACCATAG 60.601 57.143 0.00 0.00 0.00 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.130569 TGGTACAGAAAACCAAACCTTACAT 58.869 36.000 0.00 0.00 43.99 2.29
27 28 0.813184 AGTCGCCAGAATGCAATTGG 59.187 50.000 7.72 9.46 36.07 3.16
148 1808 2.026356 CCCATAGGTGTGTTGGATGACA 60.026 50.000 0.00 0.00 31.94 3.58
149 1809 2.643551 CCCATAGGTGTGTTGGATGAC 58.356 52.381 0.00 0.00 31.94 3.06
173 1833 4.373116 GTCTTCCGGCGGCAGACA 62.373 66.667 40.57 17.20 37.48 3.41
235 1895 4.106925 CCCCTCTGCCTGGCTCAC 62.107 72.222 21.03 0.00 0.00 3.51
274 1934 4.656117 ACGTGTGCATCGTCCGCA 62.656 61.111 12.76 0.00 36.85 5.69
280 1941 0.943835 TGTTCTGGACGTGTGCATCG 60.944 55.000 11.60 11.60 0.00 3.84
295 1956 1.810030 GAGATCCGCGTGGGTGTTC 60.810 63.158 16.49 4.30 37.00 3.18
341 2002 2.365105 TGGTAGGGCCTTCCTCCG 60.365 66.667 27.08 0.00 44.06 4.63
354 2015 0.916086 AAAGCGGGATGATGGTGGTA 59.084 50.000 0.00 0.00 0.00 3.25
355 2016 0.680921 CAAAGCGGGATGATGGTGGT 60.681 55.000 0.00 0.00 0.00 4.16
357 2018 1.434696 GCAAAGCGGGATGATGGTG 59.565 57.895 0.00 0.00 0.00 4.17
358 2019 1.754234 GGCAAAGCGGGATGATGGT 60.754 57.895 0.00 0.00 0.00 3.55
360 2021 2.492773 GGGGCAAAGCGGGATGATG 61.493 63.158 0.00 0.00 0.00 3.07
361 2022 2.123726 GGGGCAAAGCGGGATGAT 60.124 61.111 0.00 0.00 0.00 2.45
362 2023 3.656280 TGGGGCAAAGCGGGATGA 61.656 61.111 0.00 0.00 0.00 2.92
363 2024 3.451894 GTGGGGCAAAGCGGGATG 61.452 66.667 0.00 0.00 0.00 3.51
410 2078 2.558554 TAGAGCTTTGAGCCGTCGCC 62.559 60.000 0.00 0.00 43.77 5.54
411 2079 0.736325 TTAGAGCTTTGAGCCGTCGC 60.736 55.000 0.00 0.00 43.77 5.19
412 2080 1.710013 TTTAGAGCTTTGAGCCGTCG 58.290 50.000 0.00 0.00 43.77 5.12
413 2081 2.282820 CGATTTAGAGCTTTGAGCCGTC 59.717 50.000 0.00 0.00 43.77 4.79
414 2082 2.094182 TCGATTTAGAGCTTTGAGCCGT 60.094 45.455 0.00 0.00 43.77 5.68
415 2083 2.540515 TCGATTTAGAGCTTTGAGCCG 58.459 47.619 0.00 0.00 43.77 5.52
416 2084 4.318404 CGATTCGATTTAGAGCTTTGAGCC 60.318 45.833 0.00 0.00 43.77 4.70
417 2085 4.318404 CCGATTCGATTTAGAGCTTTGAGC 60.318 45.833 7.83 0.00 42.84 4.26
418 2086 5.043903 TCCGATTCGATTTAGAGCTTTGAG 58.956 41.667 7.83 0.00 0.00 3.02
435 2103 2.103263 CCCGATTCTCTTCCTTCCGATT 59.897 50.000 0.00 0.00 0.00 3.34
441 2109 2.552093 TCCTCCCGATTCTCTTCCTT 57.448 50.000 0.00 0.00 0.00 3.36
445 2113 1.501582 CCCTTCCTCCCGATTCTCTT 58.498 55.000 0.00 0.00 0.00 2.85
450 2118 1.693103 GACCCCCTTCCTCCCGATT 60.693 63.158 0.00 0.00 0.00 3.34
459 2127 1.758906 CCTCTCCTCGACCCCCTTC 60.759 68.421 0.00 0.00 0.00 3.46
490 2158 0.460987 CAGCCGTCATCTCCTTCCAC 60.461 60.000 0.00 0.00 0.00 4.02
553 2224 1.849976 GACAAGTCGTCTCCGTCGGT 61.850 60.000 11.88 0.00 41.81 4.69
558 2229 2.913777 TACATGACAAGTCGTCTCCG 57.086 50.000 0.00 0.00 45.60 4.63
610 2289 1.089920 CAACTCCACTGCCTGCATAC 58.910 55.000 0.00 0.00 0.00 2.39
622 2301 7.434013 GCTTTTAACGAAGAAAAATCAACTCCA 59.566 33.333 0.00 0.00 0.00 3.86
644 2325 2.182842 GGATGCATCTCGGCGCTTT 61.183 57.895 25.28 0.00 36.28 3.51
894 2578 3.512516 GGCAATGACCCTGAGCGC 61.513 66.667 0.00 0.00 0.00 5.92
896 2580 0.610232 AGTTGGCAATGACCCTGAGC 60.610 55.000 1.92 0.00 0.00 4.26
951 2639 3.568430 GGAGGTTTGTAGTTGGAACTTGG 59.432 47.826 0.00 0.00 40.37 3.61
989 2677 2.676471 AAGCCATGGCCGTGAACC 60.676 61.111 33.14 13.58 43.17 3.62
1124 2818 3.921021 CGGTGAATCAGTCAAGTGAGTAC 59.079 47.826 0.00 0.00 38.23 2.73
1125 2819 3.056821 CCGGTGAATCAGTCAAGTGAGTA 60.057 47.826 0.00 0.00 38.23 2.59
1142 2836 1.518056 ATGCTGAAAGTGCACCGGTG 61.518 55.000 30.66 30.66 43.59 4.94
1145 2839 0.386352 CACATGCTGAAAGTGCACCG 60.386 55.000 14.63 0.00 43.59 4.94
1146 2840 0.038892 CCACATGCTGAAAGTGCACC 60.039 55.000 14.63 0.00 43.59 5.01
1418 3653 4.391830 CGGTAGCAAATTACACATGACAGT 59.608 41.667 0.00 0.00 0.00 3.55
1460 3755 0.248990 CAAACACAACAGCACCGCAT 60.249 50.000 0.00 0.00 0.00 4.73
1463 3758 1.135546 TGAACAAACACAACAGCACCG 60.136 47.619 0.00 0.00 0.00 4.94
1464 3759 2.645730 TGAACAAACACAACAGCACC 57.354 45.000 0.00 0.00 0.00 5.01
1465 3760 3.768406 TGATGAACAAACACAACAGCAC 58.232 40.909 0.00 0.00 0.00 4.40
1467 3762 3.374745 CCTGATGAACAAACACAACAGC 58.625 45.455 0.00 0.00 36.22 4.40
1468 3763 3.381272 ACCCTGATGAACAAACACAACAG 59.619 43.478 0.00 0.00 36.92 3.16
1547 3842 4.988716 ACCGCGGACACCTCTGGA 62.989 66.667 35.90 0.00 0.00 3.86
1651 3946 1.227853 ACCAGCACGTTCTTGGGAC 60.228 57.895 12.78 0.00 0.00 4.46
2034 4335 2.818132 CGCCTCCATGTCCTCCTC 59.182 66.667 0.00 0.00 0.00 3.71
2272 4573 1.969208 CAGATGGGAGCAGCTCTATCA 59.031 52.381 27.38 21.06 31.63 2.15
2274 4575 1.969923 GACAGATGGGAGCAGCTCTAT 59.030 52.381 21.99 15.93 0.00 1.98
2360 4703 3.426292 GCAAATCCGTAGAAACTTCAGCC 60.426 47.826 0.00 0.00 0.00 4.85
2362 4705 6.910536 ATAGCAAATCCGTAGAAACTTCAG 57.089 37.500 0.00 0.00 0.00 3.02
2429 4774 4.018960 CCAAGAGGGAAGGAATGAAGAAGA 60.019 45.833 0.00 0.00 40.01 2.87
2437 4782 0.912486 CCGACCAAGAGGGAAGGAAT 59.088 55.000 0.00 0.00 41.15 3.01
2439 4784 0.903454 GTCCGACCAAGAGGGAAGGA 60.903 60.000 0.00 0.00 41.18 3.36
2441 4786 0.905337 AGGTCCGACCAAGAGGGAAG 60.905 60.000 19.95 0.00 41.95 3.46
2443 4788 1.305046 GAGGTCCGACCAAGAGGGA 60.305 63.158 19.95 0.00 41.95 4.20
2444 4789 2.711922 CGAGGTCCGACCAAGAGGG 61.712 68.421 19.95 0.00 41.95 4.30
2445 4790 2.885861 CGAGGTCCGACCAAGAGG 59.114 66.667 19.95 0.16 41.95 3.69
2446 4791 2.182030 GCGAGGTCCGACCAAGAG 59.818 66.667 19.95 8.49 41.95 2.85
2453 4798 2.035155 TTCTCCTGCGAGGTCCGA 59.965 61.111 0.00 0.00 41.76 4.55
2461 4806 4.441695 TGGCGAGCTTCTCCTGCG 62.442 66.667 0.00 0.00 35.28 5.18
2478 4823 0.984995 GGTGGGGCTAGTTCTTCACT 59.015 55.000 0.00 0.00 39.87 3.41
2480 4825 1.559682 GATGGTGGGGCTAGTTCTTCA 59.440 52.381 0.00 0.00 0.00 3.02
2484 4829 5.763876 AATATAGATGGTGGGGCTAGTTC 57.236 43.478 0.00 0.00 0.00 3.01
2504 4849 5.733620 TTACTTCACGTCTTCACCCTAAT 57.266 39.130 0.00 0.00 0.00 1.73
2509 4854 2.415512 GCCATTACTTCACGTCTTCACC 59.584 50.000 0.00 0.00 0.00 4.02
2550 4895 2.286425 CCACACCCCTCCTCCCAT 60.286 66.667 0.00 0.00 0.00 4.00
2556 4901 3.480133 CGATCCCCACACCCCTCC 61.480 72.222 0.00 0.00 0.00 4.30
2565 4910 1.632018 AAAATCTCCGGCGATCCCCA 61.632 55.000 9.30 0.00 0.00 4.96
2575 4920 4.445718 CGACATCACCTATGAAAATCTCCG 59.554 45.833 0.00 0.00 38.69 4.63
2580 4925 3.117888 AGCCCGACATCACCTATGAAAAT 60.118 43.478 0.00 0.00 38.69 1.82
2588 4933 1.115467 CTCTAAGCCCGACATCACCT 58.885 55.000 0.00 0.00 0.00 4.00
2597 4942 2.427753 GCCATCCCTCTAAGCCCG 59.572 66.667 0.00 0.00 0.00 6.13
2630 4975 2.282180 CCTCCCCCACCGTTGTTG 60.282 66.667 0.00 0.00 0.00 3.33
2631 4976 2.388610 AACCTCCCCCACCGTTGTT 61.389 57.895 0.00 0.00 0.00 2.83
2632 4977 2.775219 AACCTCCCCCACCGTTGT 60.775 61.111 0.00 0.00 0.00 3.32
2633 4978 2.282180 CAACCTCCCCCACCGTTG 60.282 66.667 0.00 0.00 0.00 4.10
2634 4979 2.448931 TCAACCTCCCCCACCGTT 60.449 61.111 0.00 0.00 0.00 4.44
2635 4980 2.928396 CTCAACCTCCCCCACCGT 60.928 66.667 0.00 0.00 0.00 4.83
2636 4981 3.717294 CCTCAACCTCCCCCACCG 61.717 72.222 0.00 0.00 0.00 4.94
2637 4982 3.339093 CCCTCAACCTCCCCCACC 61.339 72.222 0.00 0.00 0.00 4.61
2638 4983 3.339093 CCCCTCAACCTCCCCCAC 61.339 72.222 0.00 0.00 0.00 4.61
2639 4984 3.135716 TTCCCCTCAACCTCCCCCA 62.136 63.158 0.00 0.00 0.00 4.96
2640 4985 2.204244 TTCCCCTCAACCTCCCCC 60.204 66.667 0.00 0.00 0.00 5.40
2641 4986 2.309504 CCTTCCCCTCAACCTCCCC 61.310 68.421 0.00 0.00 0.00 4.81
2642 4987 2.985116 GCCTTCCCCTCAACCTCCC 61.985 68.421 0.00 0.00 0.00 4.30
2643 4988 2.677848 GCCTTCCCCTCAACCTCC 59.322 66.667 0.00 0.00 0.00 4.30
2644 4989 2.269241 CGCCTTCCCCTCAACCTC 59.731 66.667 0.00 0.00 0.00 3.85
2645 4990 3.330720 CCGCCTTCCCCTCAACCT 61.331 66.667 0.00 0.00 0.00 3.50
2646 4991 4.426313 CCCGCCTTCCCCTCAACC 62.426 72.222 0.00 0.00 0.00 3.77
2647 4992 4.426313 CCCCGCCTTCCCCTCAAC 62.426 72.222 0.00 0.00 0.00 3.18
2684 5114 2.434884 CAGCCTGCACCACCTACG 60.435 66.667 0.00 0.00 0.00 3.51
2686 5116 4.033776 GCCAGCCTGCACCACCTA 62.034 66.667 0.00 0.00 0.00 3.08
2692 5122 3.127533 CTAACCGCCAGCCTGCAC 61.128 66.667 0.00 0.00 0.00 4.57
2695 5125 3.717294 ACCCTAACCGCCAGCCTG 61.717 66.667 0.00 0.00 0.00 4.85
2696 5126 3.717294 CACCCTAACCGCCAGCCT 61.717 66.667 0.00 0.00 0.00 4.58
2697 5127 4.796495 CCACCCTAACCGCCAGCC 62.796 72.222 0.00 0.00 0.00 4.85
2698 5128 4.796495 CCCACCCTAACCGCCAGC 62.796 72.222 0.00 0.00 0.00 4.85
2699 5129 4.109675 CCCCACCCTAACCGCCAG 62.110 72.222 0.00 0.00 0.00 4.85
2700 5130 3.559355 TACCCCACCCTAACCGCCA 62.559 63.158 0.00 0.00 0.00 5.69
2701 5131 2.688299 TACCCCACCCTAACCGCC 60.688 66.667 0.00 0.00 0.00 6.13
2702 5132 2.738938 CCTACCCCACCCTAACCGC 61.739 68.421 0.00 0.00 0.00 5.68
2703 5133 2.738938 GCCTACCCCACCCTAACCG 61.739 68.421 0.00 0.00 0.00 4.44
2704 5134 1.307604 AGCCTACCCCACCCTAACC 60.308 63.158 0.00 0.00 0.00 2.85
2705 5135 1.912971 CAGCCTACCCCACCCTAAC 59.087 63.158 0.00 0.00 0.00 2.34
2706 5136 1.999002 GCAGCCTACCCCACCCTAA 60.999 63.158 0.00 0.00 0.00 2.69
2707 5137 2.366435 GCAGCCTACCCCACCCTA 60.366 66.667 0.00 0.00 0.00 3.53
2708 5138 4.675303 TGCAGCCTACCCCACCCT 62.675 66.667 0.00 0.00 0.00 4.34
2709 5139 4.115199 CTGCAGCCTACCCCACCC 62.115 72.222 0.00 0.00 0.00 4.61
2710 5140 4.115199 CCTGCAGCCTACCCCACC 62.115 72.222 8.66 0.00 0.00 4.61
2711 5141 1.926426 AATCCTGCAGCCTACCCCAC 61.926 60.000 8.66 0.00 0.00 4.61
2712 5142 1.619363 AATCCTGCAGCCTACCCCA 60.619 57.895 8.66 0.00 0.00 4.96
2713 5143 1.152881 CAATCCTGCAGCCTACCCC 60.153 63.158 8.66 0.00 0.00 4.95
2714 5144 1.152881 CCAATCCTGCAGCCTACCC 60.153 63.158 8.66 0.00 0.00 3.69
2715 5145 1.152881 CCCAATCCTGCAGCCTACC 60.153 63.158 8.66 0.00 0.00 3.18
2724 5154 1.885049 TCTTCCTCCTCCCAATCCTG 58.115 55.000 0.00 0.00 0.00 3.86
2725 5155 2.486716 CTTCTTCCTCCTCCCAATCCT 58.513 52.381 0.00 0.00 0.00 3.24
2730 5160 1.555765 CCTTCCTTCTTCCTCCTCCCA 60.556 57.143 0.00 0.00 0.00 4.37
2747 5177 2.234908 CTGTTCATCGTCTTCCTCCCTT 59.765 50.000 0.00 0.00 0.00 3.95
2748 5178 1.827969 CTGTTCATCGTCTTCCTCCCT 59.172 52.381 0.00 0.00 0.00 4.20
2749 5179 1.550976 ACTGTTCATCGTCTTCCTCCC 59.449 52.381 0.00 0.00 0.00 4.30
2750 5180 2.494073 AGACTGTTCATCGTCTTCCTCC 59.506 50.000 0.00 0.00 37.19 4.30
2768 5198 2.888594 TGGTCCAAAATCGATCGAGAC 58.111 47.619 23.84 21.77 0.00 3.36
2777 5207 4.981806 TTCGATCCAATGGTCCAAAATC 57.018 40.909 0.00 0.00 0.00 2.17
2831 5261 2.636830 CTCTATTTGTCAGGTGCCTGG 58.363 52.381 17.23 0.00 43.75 4.45
2834 5264 1.065126 AGGCTCTATTTGTCAGGTGCC 60.065 52.381 0.00 0.00 39.40 5.01
3038 6144 8.899427 TTCTTAATCAATGAATGTGGCAAAAA 57.101 26.923 0.00 0.00 0.00 1.94
3039 6145 8.366401 TCTTCTTAATCAATGAATGTGGCAAAA 58.634 29.630 0.00 0.00 0.00 2.44
3040 6146 7.894708 TCTTCTTAATCAATGAATGTGGCAAA 58.105 30.769 0.00 0.00 0.00 3.68
3050 6156 6.886459 CCAACCCTCTTCTTCTTAATCAATGA 59.114 38.462 0.00 0.00 0.00 2.57
3051 6157 6.660949 ACCAACCCTCTTCTTCTTAATCAATG 59.339 38.462 0.00 0.00 0.00 2.82
3055 6161 5.877564 CAGACCAACCCTCTTCTTCTTAATC 59.122 44.000 0.00 0.00 0.00 1.75
3117 6223 1.798223 CATGTTGTGTACACCACTCGG 59.202 52.381 25.44 14.00 44.81 4.63
3118 6224 1.194547 GCATGTTGTGTACACCACTCG 59.805 52.381 25.44 18.44 44.81 4.18
3153 6266 6.024049 GCTTTCTTCACAATAGTGTATGTGC 58.976 40.000 0.00 0.00 45.08 4.57
3183 6296 2.210961 TGACGTCTATCTGCTACCTCG 58.789 52.381 17.92 0.00 0.00 4.63
3184 6297 3.120477 CGATGACGTCTATCTGCTACCTC 60.120 52.174 17.92 0.00 34.56 3.85
3200 6313 3.129462 TGGAGAGAAGTGATGACGATGAC 59.871 47.826 0.00 0.00 0.00 3.06
3206 6319 2.999355 GTGCTTGGAGAGAAGTGATGAC 59.001 50.000 0.00 0.00 0.00 3.06
3207 6320 2.634453 TGTGCTTGGAGAGAAGTGATGA 59.366 45.455 0.00 0.00 0.00 2.92
3208 6321 3.049708 TGTGCTTGGAGAGAAGTGATG 57.950 47.619 0.00 0.00 0.00 3.07
3209 6322 3.607741 CATGTGCTTGGAGAGAAGTGAT 58.392 45.455 0.00 0.00 0.00 3.06
3210 6323 2.289882 CCATGTGCTTGGAGAGAAGTGA 60.290 50.000 0.00 0.00 39.25 3.41
3211 6324 2.082231 CCATGTGCTTGGAGAGAAGTG 58.918 52.381 0.00 0.00 39.25 3.16
3212 6325 1.701847 ACCATGTGCTTGGAGAGAAGT 59.298 47.619 10.54 0.00 39.25 3.01
3213 6326 2.486472 ACCATGTGCTTGGAGAGAAG 57.514 50.000 10.54 0.00 39.25 2.85
3214 6327 3.430790 CGATACCATGTGCTTGGAGAGAA 60.431 47.826 10.54 0.00 39.25 2.87
3215 6328 2.101415 CGATACCATGTGCTTGGAGAGA 59.899 50.000 10.54 0.00 39.25 3.10
3216 6329 2.159043 ACGATACCATGTGCTTGGAGAG 60.159 50.000 10.54 2.93 39.25 3.20
3217 6330 1.831106 ACGATACCATGTGCTTGGAGA 59.169 47.619 10.54 0.02 39.25 3.71
3218 6331 2.205074 GACGATACCATGTGCTTGGAG 58.795 52.381 10.54 2.93 39.25 3.86
3219 6332 1.552792 TGACGATACCATGTGCTTGGA 59.447 47.619 10.54 0.00 39.25 3.53
3220 6333 2.022764 TGACGATACCATGTGCTTGG 57.977 50.000 0.00 2.98 42.82 3.61
3221 6334 3.001634 GTGATGACGATACCATGTGCTTG 59.998 47.826 0.00 0.00 0.00 4.01
3222 6335 3.118629 AGTGATGACGATACCATGTGCTT 60.119 43.478 0.00 0.00 0.00 3.91
3223 6336 2.432146 AGTGATGACGATACCATGTGCT 59.568 45.455 0.00 0.00 0.00 4.40
3224 6337 2.826428 AGTGATGACGATACCATGTGC 58.174 47.619 0.00 0.00 0.00 4.57
3225 6338 4.686972 AGAAGTGATGACGATACCATGTG 58.313 43.478 0.00 0.00 0.00 3.21
3226 6339 4.498177 CGAGAAGTGATGACGATACCATGT 60.498 45.833 0.00 0.00 0.00 3.21
3227 6340 3.977579 CGAGAAGTGATGACGATACCATG 59.022 47.826 0.00 0.00 0.00 3.66
3228 6341 3.551046 GCGAGAAGTGATGACGATACCAT 60.551 47.826 0.00 0.00 0.00 3.55
3229 6342 2.223502 GCGAGAAGTGATGACGATACCA 60.224 50.000 0.00 0.00 0.00 3.25
3230 6343 2.386249 GCGAGAAGTGATGACGATACC 58.614 52.381 0.00 0.00 0.00 2.73
3231 6344 2.223502 TGGCGAGAAGTGATGACGATAC 60.224 50.000 0.00 0.00 0.00 2.24
3232 6345 2.021457 TGGCGAGAAGTGATGACGATA 58.979 47.619 0.00 0.00 0.00 2.92
3233 6346 0.817654 TGGCGAGAAGTGATGACGAT 59.182 50.000 0.00 0.00 0.00 3.73
3234 6347 0.601057 TTGGCGAGAAGTGATGACGA 59.399 50.000 0.00 0.00 0.00 4.20
3235 6348 0.994995 CTTGGCGAGAAGTGATGACG 59.005 55.000 0.00 0.00 0.00 4.35
3241 6354 0.167470 CATGTGCTTGGCGAGAAGTG 59.833 55.000 5.76 0.00 0.00 3.16
3258 6371 4.223032 GGATAGTTGGGATGACGATACCAT 59.777 45.833 0.00 0.00 42.74 3.55
3262 6375 3.756963 CTCGGATAGTTGGGATGACGATA 59.243 47.826 0.00 0.00 0.00 2.92
3267 6380 1.788229 TGCTCGGATAGTTGGGATGA 58.212 50.000 0.00 0.00 0.00 2.92
3270 6383 0.178068 GCTTGCTCGGATAGTTGGGA 59.822 55.000 0.00 0.00 0.00 4.37
3301 6414 1.061729 TTCGTGCTTGTGTGCAACG 59.938 52.632 0.00 0.00 45.12 4.10
3313 6426 2.126071 TGCGAGCTAGGTTCGTGC 60.126 61.111 12.87 8.39 38.46 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.