Multiple sequence alignment - TraesCS5D01G286600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G286600 chr5D 100.000 7535 0 0 1 7535 386742776 386735242 0.000000e+00 13915.0
1 TraesCS5D01G286600 chr5D 93.199 2176 109 14 2896 5057 15495150 15493000 0.000000e+00 3162.0
2 TraesCS5D01G286600 chr5D 95.473 243 11 0 5015 5257 15492968 15492726 9.170000e-104 388.0
3 TraesCS5D01G286600 chr5D 94.561 239 8 3 1673 1907 15502848 15502611 1.550000e-96 364.0
4 TraesCS5D01G286600 chr5D 85.044 341 32 9 2293 2625 15495648 15495319 5.640000e-86 329.0
5 TraesCS5D01G286600 chr5D 82.834 367 25 16 1215 1579 15503298 15502968 2.060000e-75 294.0
6 TraesCS5D01G286600 chr5D 96.835 158 2 1 2117 2271 15498655 15498498 2.090000e-65 261.0
7 TraesCS5D01G286600 chr5D 92.537 134 5 2 1939 2068 15498787 15498655 3.590000e-43 187.0
8 TraesCS5D01G286600 chr5D 87.952 83 10 0 70 152 120922823 120922905 1.730000e-16 99.0
9 TraesCS5D01G286600 chr5D 87.952 83 10 0 69 151 222425695 222425613 1.730000e-16 99.0
10 TraesCS5D01G286600 chr5B 89.014 2658 148 65 265 2844 464599225 464596634 0.000000e+00 3158.0
11 TraesCS5D01G286600 chr5B 94.016 2089 77 24 5011 7069 464594361 464592291 0.000000e+00 3121.0
12 TraesCS5D01G286600 chr5B 92.978 2122 111 16 2896 5014 464596630 464594544 0.000000e+00 3059.0
13 TraesCS5D01G286600 chr5B 96.091 307 8 4 7231 7535 464590654 464590350 1.460000e-136 497.0
14 TraesCS5D01G286600 chr5B 88.344 163 18 1 7113 7275 464590976 464590815 2.150000e-45 195.0
15 TraesCS5D01G286600 chr5B 94.118 51 3 0 7111 7161 466175977 466175927 2.250000e-10 78.7
16 TraesCS5D01G286600 chr5B 83.824 68 9 2 7162 7227 547336964 547337031 6.310000e-06 63.9
17 TraesCS5D01G286600 chr5A 92.390 2050 106 12 4893 6912 488417793 488415764 0.000000e+00 2876.0
18 TraesCS5D01G286600 chr5A 88.735 2379 117 57 319 2625 488422434 488420135 0.000000e+00 2769.0
19 TraesCS5D01G286600 chr5A 94.914 1160 56 3 3733 4890 488419191 488418033 0.000000e+00 1812.0
20 TraesCS5D01G286600 chr5A 90.559 805 53 10 2899 3702 488419971 488419189 0.000000e+00 1044.0
21 TraesCS5D01G286600 chr5A 85.968 506 69 2 3632 4136 493861916 493861412 2.390000e-149 540.0
22 TraesCS5D01G286600 chr5A 86.145 332 14 14 7229 7534 488411497 488411172 5.640000e-86 329.0
23 TraesCS5D01G286600 chr5A 81.884 276 48 2 4928 5203 324068216 324067943 1.640000e-56 231.0
24 TraesCS5D01G286600 chr5A 89.865 148 15 0 3943 4090 92481697 92481550 2.780000e-44 191.0
25 TraesCS5D01G286600 chr5A 89.865 148 15 0 3943 4090 607809394 607809541 2.780000e-44 191.0
26 TraesCS5D01G286600 chr5A 86.316 95 13 0 7014 7108 219236817 219236911 3.720000e-18 104.0
27 TraesCS5D01G286600 chr5A 90.385 52 4 1 6 57 650469800 650469750 4.880000e-07 67.6
28 TraesCS5D01G286600 chr2A 85.573 506 70 3 3632 4136 29157227 29156724 1.860000e-145 527.0
29 TraesCS5D01G286600 chr2A 85.263 95 14 0 7014 7108 747249243 747249149 1.730000e-16 99.0
30 TraesCS5D01G286600 chr1B 88.043 276 31 2 4929 5204 556239402 556239129 7.290000e-85 326.0
31 TraesCS5D01G286600 chr1B 87.681 276 33 1 4929 5204 556294146 556293872 3.390000e-83 320.0
32 TraesCS5D01G286600 chr1B 93.151 73 5 0 79 151 297454754 297454682 2.870000e-19 108.0
33 TraesCS5D01G286600 chr1B 93.151 73 5 0 79 151 618552302 618552230 2.870000e-19 108.0
34 TraesCS5D01G286600 chr3A 85.455 275 32 7 4929 5201 579523516 579523784 5.760000e-71 279.0
35 TraesCS5D01G286600 chr3A 87.448 239 30 0 3473 3711 449509315 449509553 7.450000e-70 276.0
36 TraesCS5D01G286600 chr3A 87.209 86 11 0 65 150 20292652 20292737 1.730000e-16 99.0
37 TraesCS5D01G286600 chr6B 86.531 245 33 0 4274 4518 241145206 241144962 3.470000e-68 270.0
38 TraesCS5D01G286600 chr6B 87.368 95 12 0 7014 7108 5545434 5545528 7.990000e-20 110.0
39 TraesCS5D01G286600 chr1A 84.507 284 32 8 4925 5204 8379302 8379577 3.470000e-68 270.0
40 TraesCS5D01G286600 chr1A 89.189 148 15 1 3943 4090 333924468 333924614 4.640000e-42 183.0
41 TraesCS5D01G286600 chr1A 83.824 68 9 2 7162 7227 262849429 262849362 6.310000e-06 63.9
42 TraesCS5D01G286600 chr7B 83.446 296 39 6 4926 5215 289873762 289874053 4.480000e-67 267.0
43 TraesCS5D01G286600 chr7B 86.585 82 9 2 7014 7094 720130177 720130257 1.040000e-13 89.8
44 TraesCS5D01G286600 chr3B 77.395 261 52 6 5861 6120 823912954 823913208 1.690000e-31 148.0
45 TraesCS5D01G286600 chr3B 87.952 83 10 0 69 151 119079984 119080066 1.730000e-16 99.0
46 TraesCS5D01G286600 chr1D 91.579 95 8 0 7014 7108 441296100 441296194 1.710000e-26 132.0
47 TraesCS5D01G286600 chr2D 87.500 96 11 1 7014 7108 316285692 316285597 7.990000e-20 110.0
48 TraesCS5D01G286600 chr2D 93.151 73 5 0 79 151 619373366 619373294 2.870000e-19 108.0
49 TraesCS5D01G286600 chr2D 93.478 46 3 0 4937 4982 495401350 495401395 1.360000e-07 69.4
50 TraesCS5D01G286600 chr2B 93.056 72 5 0 79 150 609961097 609961026 1.030000e-18 106.0
51 TraesCS5D01G286600 chr4B 88.095 84 9 1 66 149 32811258 32811340 1.730000e-16 99.0
52 TraesCS5D01G286600 chr4B 88.406 69 5 3 7158 7224 399190787 399190854 6.270000e-11 80.5
53 TraesCS5D01G286600 chr4B 97.222 36 1 0 2707 2742 352420019 352420054 2.270000e-05 62.1
54 TraesCS5D01G286600 chr4D 85.417 96 10 4 7015 7108 457524686 457524779 6.220000e-16 97.1
55 TraesCS5D01G286600 chr4D 85.915 71 7 3 7161 7229 321931074 321931005 1.050000e-08 73.1
56 TraesCS5D01G286600 chr7A 84.211 95 15 0 7014 7108 685926968 685927062 8.050000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G286600 chr5D 386735242 386742776 7534 True 13915.000000 13915 100.000000 1 7535 1 chr5D.!!$R2 7534
1 TraesCS5D01G286600 chr5D 15492726 15503298 10572 True 712.142857 3162 91.497571 1215 5257 7 chr5D.!!$R3 4042
2 TraesCS5D01G286600 chr5B 464590350 464599225 8875 True 2006.000000 3158 92.088600 265 7535 5 chr5B.!!$R2 7270
3 TraesCS5D01G286600 chr5A 488415764 488422434 6670 True 2125.250000 2876 91.649500 319 6912 4 chr5A.!!$R6 6593
4 TraesCS5D01G286600 chr5A 493861412 493861916 504 True 540.000000 540 85.968000 3632 4136 1 chr5A.!!$R4 504
5 TraesCS5D01G286600 chr2A 29156724 29157227 503 True 527.000000 527 85.573000 3632 4136 1 chr2A.!!$R1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.035458 CAAGGTCAAGTCGGCTCCTT 59.965 55.000 2.77 2.77 38.79 3.36 F
520 540 0.036010 AACCTCAGCCGTCCATCTTG 60.036 55.000 0.00 0.00 0.00 3.02 F
638 671 0.037160 TGCCCTAGAAACGAAACCCC 59.963 55.000 0.00 0.00 0.00 4.95 F
1506 1554 0.107703 TCAATCTGCTTACCCTGCCG 60.108 55.000 0.00 0.00 0.00 5.69 F
2822 9622 1.625315 TGTAGCTGTGGATTCAGTGCT 59.375 47.619 0.00 6.02 37.70 4.40 F
2907 9707 0.466189 CAAGGGCGCAGGATACCATT 60.466 55.000 10.83 0.00 37.17 3.16 F
4503 11305 0.472734 AGAGTGCCACTGAGGTTCCT 60.473 55.000 0.00 0.00 40.61 3.36 F
6065 13386 0.320771 GTCGCCAGCAAGGAAGAGAA 60.321 55.000 0.00 0.00 41.22 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1277 1317 0.032615 ACCACAACCAAAGCCCAGAA 60.033 50.000 0.00 0.00 0.00 3.02 R
2068 5980 1.696063 ATCATTTCGCCCATTCCTGG 58.304 50.000 0.00 0.00 42.73 4.45 R
2474 9226 2.158769 ACAGCATGGTGACTTCAGAACA 60.159 45.455 30.46 0.00 43.62 3.18 R
2885 9685 0.179468 GGTATCCTGCGCCCTTGTTA 59.821 55.000 4.18 0.00 0.00 2.41 R
4482 11284 0.036858 GAACCTCAGTGGCACTCTCC 60.037 60.000 19.13 0.29 40.22 3.71 R
4736 11538 1.912043 ACCCAGAATTCTCACCTGAGG 59.088 52.381 4.57 0.00 42.30 3.86 R
6146 13467 0.040058 ATGATCCCTGCTTTGCACCA 59.960 50.000 0.00 0.00 33.79 4.17 R
7190 15805 0.037447 GGATTATCCCCAGCCTCTGC 59.963 60.000 0.00 0.00 37.95 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.132999 GGCTCTCCGGCTTTCATC 57.867 61.111 0.00 0.00 34.85 2.92
38 39 1.884926 GGCTCTCCGGCTTTCATCG 60.885 63.158 0.00 0.00 34.85 3.84
39 40 1.141881 GCTCTCCGGCTTTCATCGA 59.858 57.895 0.00 0.00 0.00 3.59
40 41 1.148759 GCTCTCCGGCTTTCATCGAC 61.149 60.000 0.00 0.00 0.00 4.20
41 42 0.173481 CTCTCCGGCTTTCATCGACA 59.827 55.000 0.00 0.00 0.00 4.35
42 43 0.606096 TCTCCGGCTTTCATCGACAA 59.394 50.000 0.00 0.00 0.00 3.18
43 44 1.002366 CTCCGGCTTTCATCGACAAG 58.998 55.000 0.00 0.00 0.00 3.16
44 45 0.391130 TCCGGCTTTCATCGACAAGG 60.391 55.000 0.00 0.00 0.00 3.61
45 46 0.673644 CCGGCTTTCATCGACAAGGT 60.674 55.000 0.00 0.00 0.00 3.50
46 47 0.721718 CGGCTTTCATCGACAAGGTC 59.278 55.000 0.00 0.00 0.00 3.85
47 48 1.808411 GGCTTTCATCGACAAGGTCA 58.192 50.000 0.00 0.00 32.09 4.02
48 49 2.151202 GGCTTTCATCGACAAGGTCAA 58.849 47.619 0.00 0.00 32.09 3.18
49 50 2.160417 GGCTTTCATCGACAAGGTCAAG 59.840 50.000 0.00 0.00 32.09 3.02
50 51 2.808543 GCTTTCATCGACAAGGTCAAGT 59.191 45.455 0.00 0.00 32.09 3.16
51 52 3.120511 GCTTTCATCGACAAGGTCAAGTC 60.121 47.826 0.00 0.00 32.09 3.01
56 57 2.828933 GACAAGGTCAAGTCGGCTC 58.171 57.895 0.00 0.00 32.09 4.70
57 58 0.670854 GACAAGGTCAAGTCGGCTCC 60.671 60.000 0.00 0.00 32.09 4.70
58 59 1.122019 ACAAGGTCAAGTCGGCTCCT 61.122 55.000 0.00 0.00 0.00 3.69
59 60 0.035458 CAAGGTCAAGTCGGCTCCTT 59.965 55.000 2.77 2.77 38.79 3.36
60 61 0.765510 AAGGTCAAGTCGGCTCCTTT 59.234 50.000 2.77 0.00 35.32 3.11
61 62 0.765510 AGGTCAAGTCGGCTCCTTTT 59.234 50.000 0.00 0.00 0.00 2.27
62 63 0.875059 GGTCAAGTCGGCTCCTTTTG 59.125 55.000 0.00 0.00 0.00 2.44
63 64 1.542547 GGTCAAGTCGGCTCCTTTTGA 60.543 52.381 0.00 0.00 0.00 2.69
64 65 1.531578 GTCAAGTCGGCTCCTTTTGAC 59.468 52.381 3.26 3.26 40.31 3.18
65 66 0.512952 CAAGTCGGCTCCTTTTGACG 59.487 55.000 0.00 0.00 36.49 4.35
66 67 0.602905 AAGTCGGCTCCTTTTGACGG 60.603 55.000 0.00 0.00 36.49 4.79
67 68 1.005394 GTCGGCTCCTTTTGACGGA 60.005 57.895 0.00 0.00 0.00 4.69
68 69 1.005394 TCGGCTCCTTTTGACGGAC 60.005 57.895 0.00 0.00 0.00 4.79
69 70 2.380410 CGGCTCCTTTTGACGGACG 61.380 63.158 0.00 0.00 0.00 4.79
70 71 1.301479 GGCTCCTTTTGACGGACGT 60.301 57.895 0.00 0.00 0.00 4.34
71 72 0.883370 GGCTCCTTTTGACGGACGTT 60.883 55.000 0.00 0.00 0.00 3.99
72 73 0.511653 GCTCCTTTTGACGGACGTTC 59.488 55.000 0.00 0.00 0.00 3.95
73 74 0.782384 CTCCTTTTGACGGACGTTCG 59.218 55.000 16.31 16.31 0.00 3.95
74 75 0.385029 TCCTTTTGACGGACGTTCGA 59.615 50.000 25.79 0.00 0.00 3.71
75 76 1.000060 TCCTTTTGACGGACGTTCGAT 60.000 47.619 25.79 7.20 0.00 3.59
76 77 1.126113 CCTTTTGACGGACGTTCGATG 59.874 52.381 25.79 2.26 0.00 3.84
77 78 2.055838 CTTTTGACGGACGTTCGATGA 58.944 47.619 25.79 4.57 0.00 2.92
78 79 2.357327 TTTGACGGACGTTCGATGAT 57.643 45.000 25.79 0.00 0.00 2.45
79 80 1.904144 TTGACGGACGTTCGATGATC 58.096 50.000 25.79 10.64 0.00 2.92
80 81 1.092348 TGACGGACGTTCGATGATCT 58.908 50.000 25.79 0.00 0.00 2.75
81 82 1.471287 TGACGGACGTTCGATGATCTT 59.529 47.619 25.79 0.00 0.00 2.40
82 83 1.846782 GACGGACGTTCGATGATCTTG 59.153 52.381 25.79 0.00 0.00 3.02
83 84 1.471287 ACGGACGTTCGATGATCTTGA 59.529 47.619 25.79 0.00 0.00 3.02
84 85 2.094906 ACGGACGTTCGATGATCTTGAA 60.095 45.455 25.79 0.00 0.00 2.69
85 86 2.921121 CGGACGTTCGATGATCTTGAAA 59.079 45.455 11.86 0.00 0.00 2.69
86 87 3.551890 CGGACGTTCGATGATCTTGAAAT 59.448 43.478 11.86 0.00 0.00 2.17
87 88 4.317418 CGGACGTTCGATGATCTTGAAATC 60.317 45.833 11.86 0.00 0.00 2.17
88 89 4.806247 GGACGTTCGATGATCTTGAAATCT 59.194 41.667 0.00 0.00 0.00 2.40
89 90 5.051374 GGACGTTCGATGATCTTGAAATCTC 60.051 44.000 0.00 0.00 0.00 2.75
90 91 5.410924 ACGTTCGATGATCTTGAAATCTCA 58.589 37.500 0.00 0.00 0.00 3.27
91 92 5.869344 ACGTTCGATGATCTTGAAATCTCAA 59.131 36.000 0.00 0.00 39.30 3.02
92 93 6.536582 ACGTTCGATGATCTTGAAATCTCAAT 59.463 34.615 0.00 0.00 40.78 2.57
93 94 6.844779 CGTTCGATGATCTTGAAATCTCAATG 59.155 38.462 0.00 0.00 40.78 2.82
94 95 7.465111 CGTTCGATGATCTTGAAATCTCAATGT 60.465 37.037 0.00 0.00 40.78 2.71
95 96 8.820933 GTTCGATGATCTTGAAATCTCAATGTA 58.179 33.333 0.00 0.00 40.78 2.29
96 97 8.947055 TCGATGATCTTGAAATCTCAATGTAA 57.053 30.769 0.00 0.00 40.78 2.41
97 98 9.551734 TCGATGATCTTGAAATCTCAATGTAAT 57.448 29.630 0.00 0.00 40.78 1.89
127 128 5.886960 ATGTTTGAGATGCTTTGTACTCC 57.113 39.130 0.00 0.00 0.00 3.85
128 129 4.072131 TGTTTGAGATGCTTTGTACTCCC 58.928 43.478 0.00 0.00 0.00 4.30
129 130 2.672961 TGAGATGCTTTGTACTCCCG 57.327 50.000 0.00 0.00 0.00 5.14
130 131 1.291132 GAGATGCTTTGTACTCCCGC 58.709 55.000 0.00 0.00 0.00 6.13
131 132 0.905357 AGATGCTTTGTACTCCCGCT 59.095 50.000 0.00 0.00 0.00 5.52
132 133 2.100916 GAGATGCTTTGTACTCCCGCTA 59.899 50.000 0.00 0.00 0.00 4.26
133 134 2.500098 AGATGCTTTGTACTCCCGCTAA 59.500 45.455 0.00 0.00 0.00 3.09
134 135 2.380084 TGCTTTGTACTCCCGCTAAG 57.620 50.000 0.00 0.00 0.00 2.18
135 136 1.007580 GCTTTGTACTCCCGCTAAGC 58.992 55.000 0.00 0.00 36.63 3.09
136 137 1.405661 GCTTTGTACTCCCGCTAAGCT 60.406 52.381 0.00 0.00 39.25 3.74
137 138 2.935676 GCTTTGTACTCCCGCTAAGCTT 60.936 50.000 3.48 3.48 39.25 3.74
138 139 3.335579 CTTTGTACTCCCGCTAAGCTTT 58.664 45.455 3.20 0.00 0.00 3.51
139 140 3.412237 TTGTACTCCCGCTAAGCTTTT 57.588 42.857 3.20 0.00 0.00 2.27
140 141 4.540359 TTGTACTCCCGCTAAGCTTTTA 57.460 40.909 3.20 0.00 0.00 1.52
141 142 4.748277 TGTACTCCCGCTAAGCTTTTAT 57.252 40.909 3.20 0.00 0.00 1.40
142 143 5.857471 TGTACTCCCGCTAAGCTTTTATA 57.143 39.130 3.20 0.00 0.00 0.98
143 144 6.224665 TGTACTCCCGCTAAGCTTTTATAA 57.775 37.500 3.20 0.00 0.00 0.98
144 145 6.823497 TGTACTCCCGCTAAGCTTTTATAAT 58.177 36.000 3.20 0.00 0.00 1.28
145 146 7.954835 TGTACTCCCGCTAAGCTTTTATAATA 58.045 34.615 3.20 0.00 0.00 0.98
146 147 8.086522 TGTACTCCCGCTAAGCTTTTATAATAG 58.913 37.037 3.20 0.00 0.00 1.73
147 148 7.299246 ACTCCCGCTAAGCTTTTATAATAGA 57.701 36.000 3.20 0.00 0.00 1.98
148 149 7.908453 ACTCCCGCTAAGCTTTTATAATAGAT 58.092 34.615 3.20 0.00 0.00 1.98
149 150 8.035984 ACTCCCGCTAAGCTTTTATAATAGATC 58.964 37.037 3.20 0.00 0.00 2.75
150 151 8.135382 TCCCGCTAAGCTTTTATAATAGATCT 57.865 34.615 3.20 0.00 0.00 2.75
151 152 8.594550 TCCCGCTAAGCTTTTATAATAGATCTT 58.405 33.333 3.20 4.66 0.00 2.40
152 153 9.220767 CCCGCTAAGCTTTTATAATAGATCTTT 57.779 33.333 3.20 0.00 0.00 2.52
189 190 9.185192 GCATGATATTTTCTAAAATACACAGGC 57.815 33.333 22.29 22.29 42.74 4.85
196 197 7.581213 TTTCTAAAATACACAGGCATATGGG 57.419 36.000 4.56 0.00 0.00 4.00
197 198 5.070001 TCTAAAATACACAGGCATATGGGC 58.930 41.667 4.56 0.00 43.80 5.36
198 199 3.311167 AAATACACAGGCATATGGGCA 57.689 42.857 4.56 0.00 46.44 5.36
199 200 3.530928 AATACACAGGCATATGGGCAT 57.469 42.857 4.56 0.00 46.44 4.40
200 201 4.656100 AATACACAGGCATATGGGCATA 57.344 40.909 4.56 0.00 46.44 3.14
201 202 4.656100 ATACACAGGCATATGGGCATAA 57.344 40.909 4.56 0.00 46.44 1.90
202 203 3.311167 ACACAGGCATATGGGCATAAA 57.689 42.857 4.56 0.00 46.44 1.40
203 204 3.641046 ACACAGGCATATGGGCATAAAA 58.359 40.909 4.56 0.00 46.44 1.52
204 205 4.029520 ACACAGGCATATGGGCATAAAAA 58.970 39.130 4.56 0.00 46.44 1.94
205 206 4.141959 ACACAGGCATATGGGCATAAAAAC 60.142 41.667 4.56 0.00 46.44 2.43
206 207 4.099881 CACAGGCATATGGGCATAAAAACT 59.900 41.667 4.56 0.00 46.44 2.66
207 208 4.342092 ACAGGCATATGGGCATAAAAACTC 59.658 41.667 4.56 0.00 46.44 3.01
208 209 4.341806 CAGGCATATGGGCATAAAAACTCA 59.658 41.667 4.56 0.00 46.44 3.41
209 210 4.961730 AGGCATATGGGCATAAAAACTCAA 59.038 37.500 4.56 0.00 46.44 3.02
210 211 5.424895 AGGCATATGGGCATAAAAACTCAAA 59.575 36.000 4.56 0.00 46.44 2.69
211 212 6.100134 AGGCATATGGGCATAAAAACTCAAAT 59.900 34.615 4.56 0.00 46.44 2.32
212 213 6.203338 GGCATATGGGCATAAAAACTCAAATG 59.797 38.462 4.56 0.00 42.77 2.32
213 214 6.985645 GCATATGGGCATAAAAACTCAAATGA 59.014 34.615 4.56 0.00 0.00 2.57
214 215 7.042523 GCATATGGGCATAAAAACTCAAATGAC 60.043 37.037 4.56 0.00 0.00 3.06
215 216 5.146010 TGGGCATAAAAACTCAAATGACC 57.854 39.130 0.00 0.00 46.11 4.02
216 217 4.020662 TGGGCATAAAAACTCAAATGACCC 60.021 41.667 3.68 5.45 45.45 4.46
217 218 4.020662 GGGCATAAAAACTCAAATGACCCA 60.021 41.667 0.00 0.00 41.01 4.51
218 219 4.929211 GGCATAAAAACTCAAATGACCCAC 59.071 41.667 0.00 0.00 0.00 4.61
219 220 5.279456 GGCATAAAAACTCAAATGACCCACT 60.279 40.000 0.00 0.00 0.00 4.00
220 221 6.071616 GGCATAAAAACTCAAATGACCCACTA 60.072 38.462 0.00 0.00 0.00 2.74
221 222 7.029563 GCATAAAAACTCAAATGACCCACTAG 58.970 38.462 0.00 0.00 0.00 2.57
222 223 7.094377 GCATAAAAACTCAAATGACCCACTAGA 60.094 37.037 0.00 0.00 0.00 2.43
223 224 8.960591 CATAAAAACTCAAATGACCCACTAGAT 58.039 33.333 0.00 0.00 0.00 1.98
226 227 9.533831 AAAAACTCAAATGACCCACTAGATATT 57.466 29.630 0.00 0.00 0.00 1.28
227 228 8.511604 AAACTCAAATGACCCACTAGATATTG 57.488 34.615 0.00 0.00 0.00 1.90
228 229 7.200434 ACTCAAATGACCCACTAGATATTGT 57.800 36.000 0.00 0.00 0.00 2.71
229 230 8.319057 ACTCAAATGACCCACTAGATATTGTA 57.681 34.615 0.00 0.00 0.00 2.41
230 231 8.204836 ACTCAAATGACCCACTAGATATTGTAC 58.795 37.037 0.00 0.00 0.00 2.90
231 232 8.319057 TCAAATGACCCACTAGATATTGTACT 57.681 34.615 0.00 0.00 0.00 2.73
232 233 8.421784 TCAAATGACCCACTAGATATTGTACTC 58.578 37.037 0.00 0.00 0.00 2.59
233 234 6.919775 ATGACCCACTAGATATTGTACTCC 57.080 41.667 0.00 0.00 0.00 3.85
234 235 6.027025 TGACCCACTAGATATTGTACTCCT 57.973 41.667 0.00 0.00 0.00 3.69
235 236 7.157947 TGACCCACTAGATATTGTACTCCTA 57.842 40.000 0.00 0.00 0.00 2.94
236 237 7.002879 TGACCCACTAGATATTGTACTCCTAC 58.997 42.308 0.00 0.00 0.00 3.18
237 238 7.147177 TGACCCACTAGATATTGTACTCCTACT 60.147 40.741 0.00 0.00 0.00 2.57
238 239 7.232910 ACCCACTAGATATTGTACTCCTACTC 58.767 42.308 0.00 0.00 0.00 2.59
239 240 6.660094 CCCACTAGATATTGTACTCCTACTCC 59.340 46.154 0.00 0.00 0.00 3.85
240 241 6.660094 CCACTAGATATTGTACTCCTACTCCC 59.340 46.154 0.00 0.00 0.00 4.30
241 242 7.232188 CACTAGATATTGTACTCCTACTCCCA 58.768 42.308 0.00 0.00 0.00 4.37
242 243 7.175293 CACTAGATATTGTACTCCTACTCCCAC 59.825 44.444 0.00 0.00 0.00 4.61
243 244 6.027025 AGATATTGTACTCCTACTCCCACA 57.973 41.667 0.00 0.00 0.00 4.17
244 245 5.834204 AGATATTGTACTCCTACTCCCACAC 59.166 44.000 0.00 0.00 0.00 3.82
245 246 3.537795 TTGTACTCCTACTCCCACACT 57.462 47.619 0.00 0.00 0.00 3.55
246 247 3.083122 TGTACTCCTACTCCCACACTC 57.917 52.381 0.00 0.00 0.00 3.51
247 248 2.648304 TGTACTCCTACTCCCACACTCT 59.352 50.000 0.00 0.00 0.00 3.24
248 249 3.848377 TGTACTCCTACTCCCACACTCTA 59.152 47.826 0.00 0.00 0.00 2.43
249 250 3.369242 ACTCCTACTCCCACACTCTAC 57.631 52.381 0.00 0.00 0.00 2.59
250 251 2.648304 ACTCCTACTCCCACACTCTACA 59.352 50.000 0.00 0.00 0.00 2.74
251 252 3.075582 ACTCCTACTCCCACACTCTACAA 59.924 47.826 0.00 0.00 0.00 2.41
252 253 4.264442 ACTCCTACTCCCACACTCTACAAT 60.264 45.833 0.00 0.00 0.00 2.71
253 254 4.023980 TCCTACTCCCACACTCTACAATG 58.976 47.826 0.00 0.00 0.00 2.82
254 255 4.023980 CCTACTCCCACACTCTACAATGA 58.976 47.826 0.00 0.00 0.00 2.57
255 256 4.098654 CCTACTCCCACACTCTACAATGAG 59.901 50.000 0.00 0.00 39.78 2.90
256 257 2.234908 ACTCCCACACTCTACAATGAGC 59.765 50.000 0.00 0.00 37.58 4.26
257 258 1.555075 TCCCACACTCTACAATGAGCC 59.445 52.381 0.00 0.00 37.58 4.70
258 259 1.645034 CCACACTCTACAATGAGCCG 58.355 55.000 0.00 0.00 37.58 5.52
259 260 1.645034 CACACTCTACAATGAGCCGG 58.355 55.000 0.00 0.00 37.58 6.13
260 261 1.066858 CACACTCTACAATGAGCCGGT 60.067 52.381 1.90 0.00 37.58 5.28
261 262 1.066858 ACACTCTACAATGAGCCGGTG 60.067 52.381 1.90 0.00 37.58 4.94
262 263 0.537188 ACTCTACAATGAGCCGGTGG 59.463 55.000 1.90 0.00 37.58 4.61
305 306 3.243201 GCAAGCTCCATACACCAATTAGC 60.243 47.826 0.00 0.00 0.00 3.09
309 310 3.433598 GCTCCATACACCAATTAGCCTCA 60.434 47.826 0.00 0.00 0.00 3.86
520 540 0.036010 AACCTCAGCCGTCCATCTTG 60.036 55.000 0.00 0.00 0.00 3.02
533 553 0.676466 CATCTTGCACCCAACGGCTA 60.676 55.000 0.00 0.00 0.00 3.93
542 573 1.338136 CCCAACGGCTAGATCCCACT 61.338 60.000 0.00 0.00 0.00 4.00
545 576 0.325296 AACGGCTAGATCCCACTCCA 60.325 55.000 0.00 0.00 0.00 3.86
546 577 1.043673 ACGGCTAGATCCCACTCCAC 61.044 60.000 0.00 0.00 0.00 4.02
547 578 1.742768 GGCTAGATCCCACTCCACG 59.257 63.158 0.00 0.00 0.00 4.94
548 579 1.068250 GCTAGATCCCACTCCACGC 59.932 63.158 0.00 0.00 0.00 5.34
549 580 1.742768 CTAGATCCCACTCCACGCC 59.257 63.158 0.00 0.00 0.00 5.68
550 581 1.749334 CTAGATCCCACTCCACGCCC 61.749 65.000 0.00 0.00 0.00 6.13
551 582 2.523740 TAGATCCCACTCCACGCCCA 62.524 60.000 0.00 0.00 0.00 5.36
552 583 3.682292 GATCCCACTCCACGCCCAC 62.682 68.421 0.00 0.00 0.00 4.61
638 671 0.037160 TGCCCTAGAAACGAAACCCC 59.963 55.000 0.00 0.00 0.00 4.95
639 672 0.679002 GCCCTAGAAACGAAACCCCC 60.679 60.000 0.00 0.00 0.00 5.40
640 673 0.392060 CCCTAGAAACGAAACCCCCG 60.392 60.000 0.00 0.00 0.00 5.73
641 674 1.022982 CCTAGAAACGAAACCCCCGC 61.023 60.000 0.00 0.00 0.00 6.13
642 675 1.003476 TAGAAACGAAACCCCCGCC 60.003 57.895 0.00 0.00 0.00 6.13
807 845 1.608025 GCTGCCCAAAGCCTTTTAACC 60.608 52.381 0.00 0.00 42.71 2.85
857 895 2.230750 CTCGTCCCGTCTCTAAAAAGGT 59.769 50.000 0.00 0.00 0.00 3.50
864 902 4.021916 CCGTCTCTAAAAAGGTAGGAGGA 58.978 47.826 0.00 0.00 0.00 3.71
866 904 4.098196 CGTCTCTAAAAAGGTAGGAGGAGG 59.902 50.000 0.00 0.00 0.00 4.30
871 909 0.326713 AAAGGTAGGAGGAGGAGGGC 60.327 60.000 0.00 0.00 0.00 5.19
872 910 1.528341 AAGGTAGGAGGAGGAGGGCA 61.528 60.000 0.00 0.00 0.00 5.36
873 911 1.458588 GGTAGGAGGAGGAGGGCAG 60.459 68.421 0.00 0.00 0.00 4.85
874 912 1.621377 GTAGGAGGAGGAGGGCAGA 59.379 63.158 0.00 0.00 0.00 4.26
875 913 0.757561 GTAGGAGGAGGAGGGCAGAC 60.758 65.000 0.00 0.00 0.00 3.51
914 953 2.436646 CCCATCTGCACACCGTCC 60.437 66.667 0.00 0.00 0.00 4.79
915 954 2.815211 CCATCTGCACACCGTCCG 60.815 66.667 0.00 0.00 0.00 4.79
916 955 2.048222 CATCTGCACACCGTCCGT 60.048 61.111 0.00 0.00 0.00 4.69
917 956 2.094659 CATCTGCACACCGTCCGTC 61.095 63.158 0.00 0.00 0.00 4.79
937 976 4.712425 CGGGTTTCTCGCCGTCGT 62.712 66.667 0.00 0.00 36.96 4.34
1273 1313 5.006386 TGCTTTGATTTGGTTTGGTTTTGT 58.994 33.333 0.00 0.00 0.00 2.83
1274 1314 5.474876 TGCTTTGATTTGGTTTGGTTTTGTT 59.525 32.000 0.00 0.00 0.00 2.83
1275 1315 6.655003 TGCTTTGATTTGGTTTGGTTTTGTTA 59.345 30.769 0.00 0.00 0.00 2.41
1276 1316 7.337942 TGCTTTGATTTGGTTTGGTTTTGTTAT 59.662 29.630 0.00 0.00 0.00 1.89
1277 1317 8.187480 GCTTTGATTTGGTTTGGTTTTGTTATT 58.813 29.630 0.00 0.00 0.00 1.40
1291 1331 5.622346 TTTGTTATTTCTGGGCTTTGGTT 57.378 34.783 0.00 0.00 0.00 3.67
1308 1348 2.840066 TTGTGGTTTTGGGCTCGCG 61.840 57.895 0.00 0.00 0.00 5.87
1319 1359 2.332654 GGCTCGCGGGTTTTGATGT 61.333 57.895 8.30 0.00 0.00 3.06
1322 1362 1.851021 CTCGCGGGTTTTGATGTGCA 61.851 55.000 6.13 0.00 0.00 4.57
1323 1363 1.729131 CGCGGGTTTTGATGTGCAC 60.729 57.895 10.75 10.75 0.00 4.57
1324 1364 1.729131 GCGGGTTTTGATGTGCACG 60.729 57.895 13.13 0.00 0.00 5.34
1325 1365 1.652012 CGGGTTTTGATGTGCACGT 59.348 52.632 12.38 12.38 0.00 4.49
1329 1369 1.851666 GGTTTTGATGTGCACGTTGTG 59.148 47.619 13.92 0.00 36.51 3.33
1456 1497 1.215647 CGGAGGACAAGGAGAACGG 59.784 63.158 0.00 0.00 0.00 4.44
1506 1554 0.107703 TCAATCTGCTTACCCTGCCG 60.108 55.000 0.00 0.00 0.00 5.69
1547 1595 5.474825 TCATACTGCTGATTCGTGTAAACA 58.525 37.500 0.00 0.00 0.00 2.83
1552 1600 3.493129 TGCTGATTCGTGTAAACACAGAC 59.507 43.478 13.30 2.82 46.75 3.51
1553 1601 3.741344 GCTGATTCGTGTAAACACAGACT 59.259 43.478 13.30 6.01 46.75 3.24
1554 1602 4.921515 GCTGATTCGTGTAAACACAGACTA 59.078 41.667 13.30 0.00 46.75 2.59
1557 1605 7.517734 GCTGATTCGTGTAAACACAGACTAAAA 60.518 37.037 13.30 0.00 46.75 1.52
1882 1999 5.755409 TTGCTCCAGTTACCTATCTTCAA 57.245 39.130 0.00 0.00 0.00 2.69
2068 5980 2.999507 TCTTTCTCGAGTCTGACAGC 57.000 50.000 13.13 0.65 0.00 4.40
2122 6034 3.211865 GGTTATCCGGATTTTGTCCTCC 58.788 50.000 24.71 9.70 45.46 4.30
2331 9080 3.643159 ATCTCCCAAAGTTTTGAACGC 57.357 42.857 6.18 0.00 40.55 4.84
2402 9154 4.380531 TGGAAGATCTCATATTTCGTGGC 58.619 43.478 0.00 0.00 0.00 5.01
2403 9155 4.141733 TGGAAGATCTCATATTTCGTGGCA 60.142 41.667 0.00 0.00 0.00 4.92
2451 9203 2.930826 ACCTACTTGTTGTCACCTGG 57.069 50.000 0.00 0.00 0.00 4.45
2469 9221 3.009723 CTGGGTCCATGTTGTCATGTAC 58.990 50.000 7.30 2.26 46.99 2.90
2471 9223 3.270877 GGGTCCATGTTGTCATGTACTC 58.729 50.000 7.30 0.00 46.99 2.59
2472 9224 3.270877 GGTCCATGTTGTCATGTACTCC 58.729 50.000 7.30 1.82 46.99 3.85
2473 9225 3.307410 GGTCCATGTTGTCATGTACTCCA 60.307 47.826 7.30 0.00 46.99 3.86
2474 9226 4.517285 GTCCATGTTGTCATGTACTCCAT 58.483 43.478 7.30 0.00 46.99 3.41
2503 9262 4.836125 AGTCACCATGCTGTTAAGTTTG 57.164 40.909 0.00 0.00 0.00 2.93
2561 9321 7.094334 GCTACTATTAGGTGTTTTTCAGGCTTT 60.094 37.037 0.00 0.00 0.00 3.51
2562 9322 6.981722 ACTATTAGGTGTTTTTCAGGCTTTG 58.018 36.000 0.00 0.00 0.00 2.77
2627 9412 8.531146 CCCTATAAAAACAATGTCATTTCAGGT 58.469 33.333 15.73 0.00 0.00 4.00
2662 9447 4.633565 GCTAGTTGCTTCTGACTGCTTTAT 59.366 41.667 0.00 0.00 38.95 1.40
2669 9454 7.510549 TGCTTCTGACTGCTTTATAAACTTT 57.489 32.000 0.00 0.00 0.00 2.66
2671 9456 7.013274 TGCTTCTGACTGCTTTATAAACTTTGT 59.987 33.333 0.00 0.00 0.00 2.83
2681 9466 8.359642 TGCTTTATAAACTTTGTTGCAAGAGAT 58.640 29.630 0.00 0.00 0.00 2.75
2710 9495 8.856153 TTGCAATGGTCTTTTGTATTCTACTA 57.144 30.769 0.00 0.00 0.00 1.82
2713 9498 7.201705 GCAATGGTCTTTTGTATTCTACTACCC 60.202 40.741 0.00 0.00 0.00 3.69
2715 9500 6.027482 TGGTCTTTTGTATTCTACTACCCCT 58.973 40.000 0.00 0.00 0.00 4.79
2718 9503 7.124750 GGTCTTTTGTATTCTACTACCCCTGTA 59.875 40.741 0.00 0.00 0.00 2.74
2722 9507 6.034442 TGTATTCTACTACCCCTGTACCAT 57.966 41.667 0.00 0.00 0.00 3.55
2731 9516 9.986157 CTACTACCCCTGTACCATAATATAAGA 57.014 37.037 0.00 0.00 0.00 2.10
2733 9518 9.268282 ACTACCCCTGTACCATAATATAAGATG 57.732 37.037 0.00 0.00 0.00 2.90
2734 9519 9.268282 CTACCCCTGTACCATAATATAAGATGT 57.732 37.037 0.00 0.00 0.00 3.06
2735 9520 8.520119 ACCCCTGTACCATAATATAAGATGTT 57.480 34.615 0.00 0.00 0.00 2.71
2736 9521 8.955794 ACCCCTGTACCATAATATAAGATGTTT 58.044 33.333 0.00 0.00 0.00 2.83
2737 9522 9.807921 CCCCTGTACCATAATATAAGATGTTTT 57.192 33.333 0.00 0.00 0.00 2.43
2750 9535 5.662211 AAGATGTTTTTGCATTGAACTGC 57.338 34.783 0.00 0.00 42.62 4.40
2762 9547 5.678921 GCATTGAACTGCAAAAACATAACC 58.321 37.500 0.00 0.00 41.87 2.85
2763 9548 5.334028 GCATTGAACTGCAAAAACATAACCC 60.334 40.000 0.00 0.00 41.87 4.11
2764 9549 5.606348 TTGAACTGCAAAAACATAACCCT 57.394 34.783 0.00 0.00 32.46 4.34
2767 9552 7.296628 TGAACTGCAAAAACATAACCCTTAT 57.703 32.000 0.00 0.00 0.00 1.73
2769 9554 9.030452 TGAACTGCAAAAACATAACCCTTATAT 57.970 29.630 0.00 0.00 0.00 0.86
2770 9555 9.869757 GAACTGCAAAAACATAACCCTTATATT 57.130 29.630 0.00 0.00 0.00 1.28
2807 9607 6.757478 GGAGTAACTTTTATCTCAGGTGTAGC 59.243 42.308 0.00 0.00 0.00 3.58
2822 9622 1.625315 TGTAGCTGTGGATTCAGTGCT 59.375 47.619 0.00 6.02 37.70 4.40
2834 9634 2.084610 TCAGTGCTCTTTGTCCATCG 57.915 50.000 0.00 0.00 0.00 3.84
2837 9637 3.006430 TCAGTGCTCTTTGTCCATCGTTA 59.994 43.478 0.00 0.00 0.00 3.18
2838 9638 3.935203 CAGTGCTCTTTGTCCATCGTTAT 59.065 43.478 0.00 0.00 0.00 1.89
2844 9644 7.815068 GTGCTCTTTGTCCATCGTTATATATCT 59.185 37.037 0.00 0.00 0.00 1.98
2845 9645 8.029522 TGCTCTTTGTCCATCGTTATATATCTC 58.970 37.037 0.00 0.00 0.00 2.75
2907 9707 0.466189 CAAGGGCGCAGGATACCATT 60.466 55.000 10.83 0.00 37.17 3.16
2914 9714 1.027357 GCAGGATACCATTGCCACTG 58.973 55.000 0.00 0.00 37.17 3.66
2915 9715 1.683011 GCAGGATACCATTGCCACTGT 60.683 52.381 0.00 0.00 37.17 3.55
2929 9729 7.754924 CCATTGCCACTGTAAAATTACTAACAG 59.245 37.037 5.05 0.00 43.90 3.16
2962 9762 6.386927 TCCTAGGAGACAACATCCAATTGTAT 59.613 38.462 7.62 0.00 40.36 2.29
2965 9765 4.260784 GGAGACAACATCCAATTGTATCGC 60.261 45.833 4.43 0.00 45.15 4.58
2977 9777 8.282455 TCCAATTGTATCGCCTGTTTTATTTA 57.718 30.769 4.43 0.00 0.00 1.40
2988 9788 8.822855 TCGCCTGTTTTATTTATATACTGTGTG 58.177 33.333 0.00 0.00 0.00 3.82
2989 9789 8.609176 CGCCTGTTTTATTTATATACTGTGTGT 58.391 33.333 0.00 0.00 0.00 3.72
3001 9801 9.672086 TTATATACTGTGTGTTTGTTTTGCTTC 57.328 29.630 0.00 0.00 0.00 3.86
3002 9802 4.250116 ACTGTGTGTTTGTTTTGCTTCA 57.750 36.364 0.00 0.00 0.00 3.02
3003 9803 3.987220 ACTGTGTGTTTGTTTTGCTTCAC 59.013 39.130 0.00 0.00 0.00 3.18
3004 9804 4.236935 CTGTGTGTTTGTTTTGCTTCACT 58.763 39.130 0.00 0.00 0.00 3.41
3005 9805 3.986572 TGTGTGTTTGTTTTGCTTCACTG 59.013 39.130 0.00 0.00 0.00 3.66
3006 9806 4.233789 GTGTGTTTGTTTTGCTTCACTGA 58.766 39.130 0.00 0.00 0.00 3.41
3007 9807 4.864247 GTGTGTTTGTTTTGCTTCACTGAT 59.136 37.500 0.00 0.00 0.00 2.90
3008 9808 5.348451 GTGTGTTTGTTTTGCTTCACTGATT 59.652 36.000 0.00 0.00 0.00 2.57
3009 9809 5.348179 TGTGTTTGTTTTGCTTCACTGATTG 59.652 36.000 0.00 0.00 0.00 2.67
3010 9810 4.329528 TGTTTGTTTTGCTTCACTGATTGC 59.670 37.500 0.00 0.00 0.00 3.56
3011 9811 4.389890 TTGTTTTGCTTCACTGATTGCT 57.610 36.364 6.24 0.00 0.00 3.91
3012 9812 3.968649 TGTTTTGCTTCACTGATTGCTC 58.031 40.909 6.24 0.00 0.00 4.26
3013 9813 3.380954 TGTTTTGCTTCACTGATTGCTCA 59.619 39.130 6.24 0.00 0.00 4.26
3014 9814 4.142204 TGTTTTGCTTCACTGATTGCTCAA 60.142 37.500 6.24 0.00 0.00 3.02
3015 9815 3.909776 TTGCTTCACTGATTGCTCAAG 57.090 42.857 6.24 0.00 0.00 3.02
3016 9816 2.854963 TGCTTCACTGATTGCTCAAGT 58.145 42.857 6.24 0.00 0.00 3.16
3017 9817 2.810274 TGCTTCACTGATTGCTCAAGTC 59.190 45.455 6.24 0.00 0.00 3.01
3041 9841 4.033817 GCAAACAGCAGTTACATTTTGCAA 59.966 37.500 11.02 0.00 45.18 4.08
3067 9867 9.975218 ATACCAATTATCTTTAGTTGTCTTGGT 57.025 29.630 8.08 8.08 44.32 3.67
3071 9871 9.965824 CAATTATCTTTAGTTGTCTTGGTTGTT 57.034 29.630 0.00 0.00 0.00 2.83
3077 9877 9.016438 TCTTTAGTTGTCTTGGTTGTTTTACTT 57.984 29.630 0.00 0.00 0.00 2.24
3097 9897 9.745880 TTTACTTTCTAGTTAGACTTGTCAGTG 57.254 33.333 3.49 0.00 35.78 3.66
3127 9927 4.588528 TGATTTTGCCTTTCCTGCTAACTT 59.411 37.500 0.00 0.00 0.00 2.66
3137 9937 4.640771 TCCTGCTAACTTCAACAATCCT 57.359 40.909 0.00 0.00 0.00 3.24
3148 9949 6.023603 ACTTCAACAATCCTCCTTACCTCTA 58.976 40.000 0.00 0.00 0.00 2.43
3161 9962 5.087323 CCTTACCTCTATCTTCTGCCCATA 58.913 45.833 0.00 0.00 0.00 2.74
3207 10008 9.872757 ATACTCATTTGTTACGTTGTGTTAAAG 57.127 29.630 0.00 0.00 0.00 1.85
3261 10063 4.455606 AGTAGAAATACTGCCATGCCTTC 58.544 43.478 0.00 0.00 31.60 3.46
3268 10070 2.318908 ACTGCCATGCCTTCTTTTCAA 58.681 42.857 0.00 0.00 0.00 2.69
3306 10108 5.437946 TCCCACGTGCCATTGTATTTAATA 58.562 37.500 10.91 0.00 0.00 0.98
3410 10212 3.003482 GCTGCTAGAATTCAAGCCATCAG 59.997 47.826 8.44 5.99 37.97 2.90
3463 10265 6.664816 TCCCAATAATTCTTCTGAAACTGCAT 59.335 34.615 0.00 0.00 35.63 3.96
3518 10320 5.327616 TGCACCAATGGAATTCAACATAG 57.672 39.130 6.16 1.37 31.22 2.23
3624 10426 6.319152 AGGATGCATCTTCTTTTCTTCATCAG 59.681 38.462 25.28 0.00 32.92 2.90
3810 10612 2.216898 GATTTTCCTGCTGGATCCGAG 58.783 52.381 13.72 7.03 42.81 4.63
3819 10621 2.290896 TGCTGGATCCGAGGTTGAAAAT 60.291 45.455 7.39 0.00 0.00 1.82
3969 10771 6.435277 ACAGCAAATCTGATAAAACATCTGGT 59.565 34.615 0.00 0.00 45.72 4.00
3975 10777 6.985188 TCTGATAAAACATCTGGTAGTTGC 57.015 37.500 0.00 0.00 0.00 4.17
3982 10784 3.326747 ACATCTGGTAGTTGCGAGTTTC 58.673 45.455 0.00 0.00 0.00 2.78
3996 10798 3.975035 GCGAGTTTCTTGGTGATTTGAAC 59.025 43.478 0.00 0.00 0.00 3.18
4019 10821 3.703556 CCCTCATCTCTTCAGAAGTGCTA 59.296 47.826 10.09 0.00 30.24 3.49
4073 10875 1.217916 TGTTCCAGGAAGGTGGACAA 58.782 50.000 0.54 0.00 46.75 3.18
4077 10879 2.696775 TCCAGGAAGGTGGACAACTTA 58.303 47.619 2.04 0.00 41.99 2.24
4109 10911 4.141711 TGGTATGGAAGTTCTGGATAGCAC 60.142 45.833 2.25 0.00 0.00 4.40
4137 10939 9.035890 TCTGAAGTATCACCAAGAGAAGAAATA 57.964 33.333 0.00 0.00 0.00 1.40
4303 11105 2.421424 CTGCCAGTTGATAACTCTTGCC 59.579 50.000 0.00 0.00 40.46 4.52
4361 11163 8.260114 TCAGAATGATCTTGCTGTTACTAATGA 58.740 33.333 14.65 0.00 42.56 2.57
4382 11184 1.639298 GACGGCATGCTCAAGTCCAC 61.639 60.000 18.92 0.00 0.00 4.02
4392 11194 2.614987 GCTCAAGTCCACTGCTGAAGAT 60.615 50.000 0.00 0.00 0.00 2.40
4400 11202 2.417933 CCACTGCTGAAGATAACTGCAC 59.582 50.000 0.00 0.00 37.31 4.57
4482 11284 3.152341 ACAAGAGGAAATCTGCAACAGG 58.848 45.455 0.00 0.00 38.67 4.00
4503 11305 0.472734 AGAGTGCCACTGAGGTTCCT 60.473 55.000 0.00 0.00 40.61 3.36
4562 11364 8.267183 TGTCACATTACTAATGGATCAAGTGAT 58.733 33.333 12.48 0.00 43.21 3.06
4634 11436 1.079503 GAGCTTGCTTCTGGTTACCG 58.920 55.000 0.00 0.00 0.00 4.02
4638 11440 2.809696 GCTTGCTTCTGGTTACCGTTTA 59.190 45.455 0.00 0.00 0.00 2.01
4687 11489 5.265191 AGCAGGAAGTTGACTCTACATCTA 58.735 41.667 0.00 0.00 0.00 1.98
4736 11538 1.270625 TGATGGGAAACACTGTCCGAC 60.271 52.381 0.00 0.00 35.86 4.79
4787 11589 1.295792 ACCTGTGTGTGCTTTGTACG 58.704 50.000 0.00 0.00 0.00 3.67
4855 11658 6.808212 AGTTTGTTGTGAAATTCAGACAGTTG 59.192 34.615 10.61 0.00 29.25 3.16
4934 11974 7.039722 TCTATTTTTGGGTTGGGAATCTACT 57.960 36.000 0.00 0.00 0.00 2.57
5264 12564 9.298250 AGTTCATCTCAGTTGTTTAGTCTAGTA 57.702 33.333 0.00 0.00 0.00 1.82
5308 12627 5.593679 ACACTTACATATGGTCGTAGCTT 57.406 39.130 7.80 0.00 0.00 3.74
5309 12628 5.974108 ACACTTACATATGGTCGTAGCTTT 58.026 37.500 7.80 0.00 0.00 3.51
5338 12657 9.554395 TGAATAGTGTTTGATGTTTCAAGTCTA 57.446 29.630 0.00 0.00 42.60 2.59
5353 12672 9.953825 GTTTCAAGTCTATGTTGTCTAAATACG 57.046 33.333 0.00 0.00 0.00 3.06
5422 12741 6.870965 ACTGAGTCTTGTTATTGCAGTCTTAG 59.129 38.462 0.00 0.00 29.97 2.18
5423 12742 6.759272 TGAGTCTTGTTATTGCAGTCTTAGT 58.241 36.000 0.00 0.00 0.00 2.24
5424 12743 6.646653 TGAGTCTTGTTATTGCAGTCTTAGTG 59.353 38.462 0.00 0.00 0.00 2.74
5425 12744 6.525629 AGTCTTGTTATTGCAGTCTTAGTGT 58.474 36.000 0.00 0.00 0.00 3.55
5427 12746 7.499232 AGTCTTGTTATTGCAGTCTTAGTGTTT 59.501 33.333 0.00 0.00 0.00 2.83
5428 12747 8.129211 GTCTTGTTATTGCAGTCTTAGTGTTTT 58.871 33.333 0.00 0.00 0.00 2.43
5429 12748 9.332502 TCTTGTTATTGCAGTCTTAGTGTTTTA 57.667 29.630 0.00 0.00 0.00 1.52
5430 12749 9.382244 CTTGTTATTGCAGTCTTAGTGTTTTAC 57.618 33.333 0.00 0.00 0.00 2.01
5431 12750 8.671384 TGTTATTGCAGTCTTAGTGTTTTACT 57.329 30.769 0.00 0.00 43.56 2.24
5437 12758 8.758633 TGCAGTCTTAGTGTTTTACTATTCTC 57.241 34.615 0.00 0.00 41.36 2.87
5481 12802 6.899393 AGTTTGGATTACATGATGTTGTGT 57.101 33.333 2.29 0.00 0.00 3.72
5533 12854 0.536724 TCGCATGGTAGCTGTGTCAT 59.463 50.000 0.00 0.00 0.00 3.06
5704 13025 9.098355 CATCTCAAGTATTTCCGACAGAATTTA 57.902 33.333 0.00 0.00 33.44 1.40
5765 13086 5.449041 GCACACATGTTGAAGAAAAGACTGA 60.449 40.000 0.00 0.00 0.00 3.41
5791 13112 4.215399 CGGAAGACACCAAAGCAAAAGATA 59.785 41.667 0.00 0.00 0.00 1.98
6057 13378 2.084844 GACTGATGTCGCCAGCAAG 58.915 57.895 0.00 0.00 36.37 4.01
6065 13386 0.320771 GTCGCCAGCAAGGAAGAGAA 60.321 55.000 0.00 0.00 41.22 2.87
6066 13387 0.615331 TCGCCAGCAAGGAAGAGAAT 59.385 50.000 0.00 0.00 41.22 2.40
6067 13388 1.831106 TCGCCAGCAAGGAAGAGAATA 59.169 47.619 0.00 0.00 41.22 1.75
6088 13409 3.996150 AAACAGATGAAGTGCAACAGG 57.004 42.857 0.00 0.00 41.43 4.00
6136 13457 2.095516 GCTCCAGAAACTACTGCAAAGC 60.096 50.000 0.00 0.00 36.67 3.51
6146 13467 4.118480 TGCAAAGCAGACGAACGT 57.882 50.000 0.00 0.00 33.32 3.99
6453 13774 4.569180 CCCGCGAAGATGCCCCAT 62.569 66.667 8.23 0.00 0.00 4.00
6621 13945 0.879090 CCGTGGCACCCTTTTTAGTC 59.121 55.000 12.86 0.00 0.00 2.59
6805 14145 2.563620 TGTATCGCCACCTGACTTTGTA 59.436 45.455 0.00 0.00 0.00 2.41
6985 14325 2.037121 TGCGGACTTGAGATGAACTTCA 59.963 45.455 0.00 0.00 0.00 3.02
6986 14326 3.265791 GCGGACTTGAGATGAACTTCAT 58.734 45.455 3.80 3.80 40.34 2.57
6987 14327 4.081697 TGCGGACTTGAGATGAACTTCATA 60.082 41.667 4.16 0.00 37.20 2.15
6988 14328 4.268884 GCGGACTTGAGATGAACTTCATAC 59.731 45.833 4.16 3.48 37.20 2.39
6989 14329 5.410924 CGGACTTGAGATGAACTTCATACA 58.589 41.667 4.16 5.81 37.20 2.29
6995 14335 8.589338 ACTTGAGATGAACTTCATACAGTACTT 58.411 33.333 4.16 0.00 37.20 2.24
7017 14357 8.685838 ACTTTGTTGCTACTTTATTTACTCCA 57.314 30.769 0.00 0.00 0.00 3.86
7033 14377 6.554334 TTACTCCATTCCAAAATATAGCGC 57.446 37.500 0.00 0.00 0.00 5.92
7035 14379 2.811431 TCCATTCCAAAATATAGCGCGG 59.189 45.455 8.83 0.00 0.00 6.46
7036 14380 2.584791 CATTCCAAAATATAGCGCGGC 58.415 47.619 8.83 0.00 0.00 6.53
7037 14381 1.669604 TTCCAAAATATAGCGCGGCA 58.330 45.000 8.83 0.00 0.00 5.69
7071 15605 7.384932 CCAAGGTTCAACTTTGACCATAAATTC 59.615 37.037 13.76 0.00 37.36 2.17
7083 15617 5.943416 TGACCATAAATTCAACCAACGAGAT 59.057 36.000 0.00 0.00 0.00 2.75
7087 15621 4.663636 AAATTCAACCAACGAGATCGAC 57.336 40.909 9.58 0.00 43.02 4.20
7093 15627 2.202623 AACGAGATCGACTGCGGC 60.203 61.111 9.58 0.00 43.02 6.53
7095 15629 4.237809 CGAGATCGACTGCGGCGA 62.238 66.667 12.98 13.13 43.02 5.54
7096 15630 2.102357 GAGATCGACTGCGGCGAA 59.898 61.111 12.98 0.00 41.52 4.70
7124 15739 7.161900 GCAAAAATTAAGTTGAAGCACGAAAAC 59.838 33.333 0.00 0.00 0.00 2.43
7125 15740 7.820044 AAAATTAAGTTGAAGCACGAAAACA 57.180 28.000 0.00 0.00 0.00 2.83
7126 15741 7.449934 AAATTAAGTTGAAGCACGAAAACAG 57.550 32.000 0.00 0.00 0.00 3.16
7128 15743 3.951979 AGTTGAAGCACGAAAACAGAG 57.048 42.857 0.00 0.00 0.00 3.35
7132 15747 3.275143 TGAAGCACGAAAACAGAGGAAA 58.725 40.909 0.00 0.00 0.00 3.13
7149 15764 7.942341 ACAGAGGAAACACTATATTTTGGAACA 59.058 33.333 0.00 0.00 0.00 3.18
7152 15767 8.567285 AGGAAACACTATATTTTGGAACAGAG 57.433 34.615 0.00 0.00 42.39 3.35
7190 15805 1.198408 AGTTGTGTGCATTGCTCGATG 59.802 47.619 10.49 0.00 0.00 3.84
7208 15923 0.767375 TGCAGAGGCTGGGGATAATC 59.233 55.000 0.00 0.00 41.91 1.75
7216 15931 2.224892 GGCTGGGGATAATCCTCCTTTC 60.225 54.545 0.00 0.00 35.67 2.62
7324 16144 7.889589 TGACAATTGTTGTAGTATCAGACTG 57.110 36.000 13.36 0.00 45.52 3.51
7478 16298 4.402793 CCAGATACTAGTAGTTGGCACTGT 59.597 45.833 17.69 0.00 34.06 3.55
7516 16336 1.374252 CAACCCCTCACGAGTTCGG 60.374 63.158 6.48 0.00 44.95 4.30
7528 16348 1.095600 GAGTTCGGCCAAAATCCTCC 58.904 55.000 2.24 0.00 0.00 4.30
7531 16351 0.034477 TTCGGCCAAAATCCTCCTCC 60.034 55.000 2.24 0.00 0.00 4.30
7532 16352 0.914417 TCGGCCAAAATCCTCCTCCT 60.914 55.000 2.24 0.00 0.00 3.69
7533 16353 0.464554 CGGCCAAAATCCTCCTCCTC 60.465 60.000 2.24 0.00 0.00 3.71
7534 16354 0.922626 GGCCAAAATCCTCCTCCTCT 59.077 55.000 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.788191 AAAGCCGGAGAGCCTTCGTG 62.788 60.000 5.05 0.00 29.14 4.35
15 16 2.508586 GAAAGCCGGAGAGCCTTCGT 62.509 60.000 5.05 0.00 29.14 3.85
16 17 1.811679 GAAAGCCGGAGAGCCTTCG 60.812 63.158 5.05 0.00 31.34 3.79
17 18 0.107459 ATGAAAGCCGGAGAGCCTTC 60.107 55.000 5.05 0.00 34.43 3.46
18 19 0.107459 GATGAAAGCCGGAGAGCCTT 60.107 55.000 5.05 0.00 0.00 4.35
19 20 1.524482 GATGAAAGCCGGAGAGCCT 59.476 57.895 5.05 0.00 0.00 4.58
20 21 1.884926 CGATGAAAGCCGGAGAGCC 60.885 63.158 5.05 0.00 0.00 4.70
21 22 1.141881 TCGATGAAAGCCGGAGAGC 59.858 57.895 5.05 0.00 0.00 4.09
22 23 0.173481 TGTCGATGAAAGCCGGAGAG 59.827 55.000 5.05 0.00 0.00 3.20
23 24 0.606096 TTGTCGATGAAAGCCGGAGA 59.394 50.000 5.05 0.00 0.00 3.71
24 25 1.002366 CTTGTCGATGAAAGCCGGAG 58.998 55.000 5.05 0.00 0.00 4.63
25 26 0.391130 CCTTGTCGATGAAAGCCGGA 60.391 55.000 5.05 0.00 0.00 5.14
26 27 0.673644 ACCTTGTCGATGAAAGCCGG 60.674 55.000 0.00 0.00 0.00 6.13
27 28 0.721718 GACCTTGTCGATGAAAGCCG 59.278 55.000 0.00 0.00 0.00 5.52
28 29 1.808411 TGACCTTGTCGATGAAAGCC 58.192 50.000 0.00 0.00 34.95 4.35
29 30 2.808543 ACTTGACCTTGTCGATGAAAGC 59.191 45.455 0.00 0.00 34.95 3.51
30 31 4.653806 GACTTGACCTTGTCGATGAAAG 57.346 45.455 0.00 0.00 34.95 2.62
38 39 0.670854 GGAGCCGACTTGACCTTGTC 60.671 60.000 0.00 0.00 0.00 3.18
39 40 1.122019 AGGAGCCGACTTGACCTTGT 61.122 55.000 0.00 0.00 0.00 3.16
40 41 0.035458 AAGGAGCCGACTTGACCTTG 59.965 55.000 0.00 0.00 39.14 3.61
41 42 0.765510 AAAGGAGCCGACTTGACCTT 59.234 50.000 0.00 0.00 41.83 3.50
42 43 0.765510 AAAAGGAGCCGACTTGACCT 59.234 50.000 0.00 0.00 0.00 3.85
43 44 0.875059 CAAAAGGAGCCGACTTGACC 59.125 55.000 0.00 0.00 0.00 4.02
44 45 1.531578 GTCAAAAGGAGCCGACTTGAC 59.468 52.381 12.39 12.39 39.16 3.18
45 46 1.872237 CGTCAAAAGGAGCCGACTTGA 60.872 52.381 0.00 0.00 0.00 3.02
46 47 0.512952 CGTCAAAAGGAGCCGACTTG 59.487 55.000 0.00 0.00 0.00 3.16
47 48 0.602905 CCGTCAAAAGGAGCCGACTT 60.603 55.000 0.00 0.00 0.00 3.01
48 49 1.004918 CCGTCAAAAGGAGCCGACT 60.005 57.895 0.00 0.00 0.00 4.18
49 50 1.005394 TCCGTCAAAAGGAGCCGAC 60.005 57.895 0.00 0.00 33.19 4.79
50 51 1.005394 GTCCGTCAAAAGGAGCCGA 60.005 57.895 0.00 0.00 38.65 5.54
51 52 2.380410 CGTCCGTCAAAAGGAGCCG 61.380 63.158 0.00 0.00 38.65 5.52
52 53 0.883370 AACGTCCGTCAAAAGGAGCC 60.883 55.000 0.00 0.00 38.65 4.70
53 54 0.511653 GAACGTCCGTCAAAAGGAGC 59.488 55.000 0.00 0.00 38.65 4.70
54 55 0.782384 CGAACGTCCGTCAAAAGGAG 59.218 55.000 0.00 0.00 38.65 3.69
55 56 0.385029 TCGAACGTCCGTCAAAAGGA 59.615 50.000 0.00 0.00 34.99 3.36
56 57 1.126113 CATCGAACGTCCGTCAAAAGG 59.874 52.381 0.00 0.00 0.00 3.11
57 58 2.055838 TCATCGAACGTCCGTCAAAAG 58.944 47.619 0.00 0.00 0.00 2.27
58 59 2.137129 TCATCGAACGTCCGTCAAAA 57.863 45.000 0.00 0.00 0.00 2.44
59 60 2.094906 AGATCATCGAACGTCCGTCAAA 60.095 45.455 0.00 0.00 0.00 2.69
60 61 1.471287 AGATCATCGAACGTCCGTCAA 59.529 47.619 0.00 0.00 0.00 3.18
61 62 1.092348 AGATCATCGAACGTCCGTCA 58.908 50.000 0.00 0.00 0.00 4.35
62 63 1.846782 CAAGATCATCGAACGTCCGTC 59.153 52.381 0.00 0.00 0.00 4.79
63 64 1.471287 TCAAGATCATCGAACGTCCGT 59.529 47.619 0.00 0.00 0.00 4.69
64 65 2.188837 TCAAGATCATCGAACGTCCG 57.811 50.000 0.00 0.00 0.00 4.79
65 66 4.806247 AGATTTCAAGATCATCGAACGTCC 59.194 41.667 0.00 0.00 0.00 4.79
66 67 5.516696 TGAGATTTCAAGATCATCGAACGTC 59.483 40.000 0.00 0.00 0.00 4.34
67 68 5.410924 TGAGATTTCAAGATCATCGAACGT 58.589 37.500 0.00 0.00 0.00 3.99
68 69 5.956171 TGAGATTTCAAGATCATCGAACG 57.044 39.130 0.00 0.00 0.00 3.95
69 70 7.692088 ACATTGAGATTTCAAGATCATCGAAC 58.308 34.615 4.85 0.00 45.89 3.95
70 71 7.854557 ACATTGAGATTTCAAGATCATCGAA 57.145 32.000 4.85 0.00 45.89 3.71
71 72 8.947055 TTACATTGAGATTTCAAGATCATCGA 57.053 30.769 4.85 0.00 45.89 3.59
101 102 9.109393 GGAGTACAAAGCATCTCAAACATAATA 57.891 33.333 0.00 0.00 0.00 0.98
102 103 7.067494 GGGAGTACAAAGCATCTCAAACATAAT 59.933 37.037 0.00 0.00 0.00 1.28
103 104 6.374333 GGGAGTACAAAGCATCTCAAACATAA 59.626 38.462 0.00 0.00 0.00 1.90
104 105 5.880332 GGGAGTACAAAGCATCTCAAACATA 59.120 40.000 0.00 0.00 0.00 2.29
105 106 4.702131 GGGAGTACAAAGCATCTCAAACAT 59.298 41.667 0.00 0.00 0.00 2.71
106 107 4.072131 GGGAGTACAAAGCATCTCAAACA 58.928 43.478 0.00 0.00 0.00 2.83
107 108 3.125316 CGGGAGTACAAAGCATCTCAAAC 59.875 47.826 0.00 0.00 0.00 2.93
108 109 3.334691 CGGGAGTACAAAGCATCTCAAA 58.665 45.455 0.00 0.00 0.00 2.69
109 110 2.935238 GCGGGAGTACAAAGCATCTCAA 60.935 50.000 0.00 0.00 0.00 3.02
110 111 1.405526 GCGGGAGTACAAAGCATCTCA 60.406 52.381 0.00 0.00 0.00 3.27
111 112 1.134670 AGCGGGAGTACAAAGCATCTC 60.135 52.381 0.00 0.00 0.00 2.75
112 113 0.905357 AGCGGGAGTACAAAGCATCT 59.095 50.000 0.00 0.00 0.00 2.90
113 114 2.596904 TAGCGGGAGTACAAAGCATC 57.403 50.000 0.00 0.00 0.00 3.91
114 115 2.906354 CTTAGCGGGAGTACAAAGCAT 58.094 47.619 0.00 0.00 0.00 3.79
115 116 1.674817 GCTTAGCGGGAGTACAAAGCA 60.675 52.381 0.00 0.00 0.00 3.91
116 117 1.007580 GCTTAGCGGGAGTACAAAGC 58.992 55.000 0.00 0.00 0.00 3.51
117 118 2.674796 AGCTTAGCGGGAGTACAAAG 57.325 50.000 0.00 0.00 0.00 2.77
118 119 3.412237 AAAGCTTAGCGGGAGTACAAA 57.588 42.857 0.00 0.00 0.00 2.83
119 120 3.412237 AAAAGCTTAGCGGGAGTACAA 57.588 42.857 0.00 0.00 0.00 2.41
120 121 4.748277 ATAAAAGCTTAGCGGGAGTACA 57.252 40.909 0.00 0.00 0.00 2.90
121 122 8.302438 TCTATTATAAAAGCTTAGCGGGAGTAC 58.698 37.037 0.00 0.00 0.00 2.73
122 123 8.413309 TCTATTATAAAAGCTTAGCGGGAGTA 57.587 34.615 0.00 0.00 0.00 2.59
123 124 7.299246 TCTATTATAAAAGCTTAGCGGGAGT 57.701 36.000 0.00 0.00 0.00 3.85
124 125 8.254508 AGATCTATTATAAAAGCTTAGCGGGAG 58.745 37.037 0.00 0.00 0.00 4.30
125 126 8.135382 AGATCTATTATAAAAGCTTAGCGGGA 57.865 34.615 0.00 0.00 0.00 5.14
126 127 8.779354 AAGATCTATTATAAAAGCTTAGCGGG 57.221 34.615 0.00 0.00 0.00 6.13
163 164 9.185192 GCCTGTGTATTTTAGAAAATATCATGC 57.815 33.333 9.94 14.12 41.39 4.06
170 171 8.641541 CCCATATGCCTGTGTATTTTAGAAAAT 58.358 33.333 5.61 5.61 41.24 1.82
171 172 7.417342 GCCCATATGCCTGTGTATTTTAGAAAA 60.417 37.037 0.00 0.00 0.00 2.29
172 173 6.040391 GCCCATATGCCTGTGTATTTTAGAAA 59.960 38.462 0.00 0.00 0.00 2.52
173 174 5.534654 GCCCATATGCCTGTGTATTTTAGAA 59.465 40.000 0.00 0.00 0.00 2.10
174 175 5.070001 GCCCATATGCCTGTGTATTTTAGA 58.930 41.667 0.00 0.00 0.00 2.10
175 176 4.826733 TGCCCATATGCCTGTGTATTTTAG 59.173 41.667 0.00 0.00 0.00 1.85
176 177 4.797743 TGCCCATATGCCTGTGTATTTTA 58.202 39.130 0.00 0.00 0.00 1.52
177 178 3.641046 TGCCCATATGCCTGTGTATTTT 58.359 40.909 0.00 0.00 0.00 1.82
178 179 3.311167 TGCCCATATGCCTGTGTATTT 57.689 42.857 0.00 0.00 0.00 1.40
179 180 3.530928 ATGCCCATATGCCTGTGTATT 57.469 42.857 0.00 0.00 0.00 1.89
180 181 4.656100 TTATGCCCATATGCCTGTGTAT 57.344 40.909 0.00 0.00 0.00 2.29
181 182 4.445557 TTTATGCCCATATGCCTGTGTA 57.554 40.909 0.00 0.00 0.00 2.90
182 183 3.311167 TTTATGCCCATATGCCTGTGT 57.689 42.857 0.00 0.00 0.00 3.72
183 184 4.099881 AGTTTTTATGCCCATATGCCTGTG 59.900 41.667 0.00 0.00 0.00 3.66
184 185 4.289245 AGTTTTTATGCCCATATGCCTGT 58.711 39.130 0.00 0.00 0.00 4.00
185 186 4.341806 TGAGTTTTTATGCCCATATGCCTG 59.658 41.667 0.00 0.00 0.00 4.85
186 187 4.545678 TGAGTTTTTATGCCCATATGCCT 58.454 39.130 0.00 0.00 0.00 4.75
187 188 4.935352 TGAGTTTTTATGCCCATATGCC 57.065 40.909 0.00 0.00 0.00 4.40
188 189 6.985645 TCATTTGAGTTTTTATGCCCATATGC 59.014 34.615 0.00 0.00 0.00 3.14
189 190 7.439056 GGTCATTTGAGTTTTTATGCCCATATG 59.561 37.037 0.00 0.00 0.00 1.78
190 191 7.418942 GGGTCATTTGAGTTTTTATGCCCATAT 60.419 37.037 0.00 0.00 35.86 1.78
191 192 6.127196 GGGTCATTTGAGTTTTTATGCCCATA 60.127 38.462 0.00 0.00 35.86 2.74
192 193 5.338300 GGGTCATTTGAGTTTTTATGCCCAT 60.338 40.000 0.00 0.00 35.86 4.00
193 194 4.020662 GGGTCATTTGAGTTTTTATGCCCA 60.021 41.667 0.00 0.00 35.86 5.36
194 195 4.020662 TGGGTCATTTGAGTTTTTATGCCC 60.021 41.667 0.00 0.00 36.11 5.36
195 196 4.929211 GTGGGTCATTTGAGTTTTTATGCC 59.071 41.667 0.00 0.00 0.00 4.40
196 197 5.783111 AGTGGGTCATTTGAGTTTTTATGC 58.217 37.500 0.00 0.00 0.00 3.14
197 198 8.335532 TCTAGTGGGTCATTTGAGTTTTTATG 57.664 34.615 0.00 0.00 0.00 1.90
200 201 9.533831 AATATCTAGTGGGTCATTTGAGTTTTT 57.466 29.630 0.00 0.00 0.00 1.94
201 202 8.960591 CAATATCTAGTGGGTCATTTGAGTTTT 58.039 33.333 0.00 0.00 0.00 2.43
202 203 8.109634 ACAATATCTAGTGGGTCATTTGAGTTT 58.890 33.333 0.00 0.00 0.00 2.66
203 204 7.633789 ACAATATCTAGTGGGTCATTTGAGTT 58.366 34.615 0.00 0.00 0.00 3.01
204 205 7.200434 ACAATATCTAGTGGGTCATTTGAGT 57.800 36.000 0.00 0.00 0.00 3.41
205 206 8.424918 AGTACAATATCTAGTGGGTCATTTGAG 58.575 37.037 0.00 0.00 0.00 3.02
206 207 8.319057 AGTACAATATCTAGTGGGTCATTTGA 57.681 34.615 0.00 0.00 0.00 2.69
207 208 7.657761 GGAGTACAATATCTAGTGGGTCATTTG 59.342 40.741 0.00 0.00 0.00 2.32
208 209 7.569111 AGGAGTACAATATCTAGTGGGTCATTT 59.431 37.037 0.00 0.00 0.00 2.32
209 210 7.076446 AGGAGTACAATATCTAGTGGGTCATT 58.924 38.462 0.00 0.00 0.00 2.57
210 211 6.625267 AGGAGTACAATATCTAGTGGGTCAT 58.375 40.000 0.00 0.00 0.00 3.06
211 212 6.027025 AGGAGTACAATATCTAGTGGGTCA 57.973 41.667 0.00 0.00 0.00 4.02
212 213 7.232910 AGTAGGAGTACAATATCTAGTGGGTC 58.767 42.308 0.00 0.00 0.00 4.46
213 214 7.164233 AGTAGGAGTACAATATCTAGTGGGT 57.836 40.000 0.00 0.00 0.00 4.51
214 215 6.660094 GGAGTAGGAGTACAATATCTAGTGGG 59.340 46.154 0.00 0.00 0.00 4.61
215 216 6.660094 GGGAGTAGGAGTACAATATCTAGTGG 59.340 46.154 0.00 0.00 0.00 4.00
216 217 7.175293 GTGGGAGTAGGAGTACAATATCTAGTG 59.825 44.444 0.00 0.00 0.00 2.74
217 218 7.147177 TGTGGGAGTAGGAGTACAATATCTAGT 60.147 40.741 0.00 0.00 0.00 2.57
218 219 7.175293 GTGTGGGAGTAGGAGTACAATATCTAG 59.825 44.444 0.00 0.00 0.00 2.43
219 220 7.002879 GTGTGGGAGTAGGAGTACAATATCTA 58.997 42.308 0.00 0.00 0.00 1.98
220 221 5.834204 GTGTGGGAGTAGGAGTACAATATCT 59.166 44.000 0.00 0.00 0.00 1.98
221 222 5.834204 AGTGTGGGAGTAGGAGTACAATATC 59.166 44.000 0.00 0.00 0.00 1.63
222 223 5.778542 AGTGTGGGAGTAGGAGTACAATAT 58.221 41.667 0.00 0.00 0.00 1.28
223 224 5.044328 AGAGTGTGGGAGTAGGAGTACAATA 60.044 44.000 0.00 0.00 0.00 1.90
224 225 4.024670 GAGTGTGGGAGTAGGAGTACAAT 58.975 47.826 0.00 0.00 0.00 2.71
225 226 3.075582 AGAGTGTGGGAGTAGGAGTACAA 59.924 47.826 0.00 0.00 0.00 2.41
226 227 2.648304 AGAGTGTGGGAGTAGGAGTACA 59.352 50.000 0.00 0.00 0.00 2.90
227 228 3.369242 AGAGTGTGGGAGTAGGAGTAC 57.631 52.381 0.00 0.00 0.00 2.73
228 229 3.848377 TGTAGAGTGTGGGAGTAGGAGTA 59.152 47.826 0.00 0.00 0.00 2.59
229 230 2.648304 TGTAGAGTGTGGGAGTAGGAGT 59.352 50.000 0.00 0.00 0.00 3.85
230 231 3.367646 TGTAGAGTGTGGGAGTAGGAG 57.632 52.381 0.00 0.00 0.00 3.69
231 232 3.820195 TTGTAGAGTGTGGGAGTAGGA 57.180 47.619 0.00 0.00 0.00 2.94
232 233 4.023980 TCATTGTAGAGTGTGGGAGTAGG 58.976 47.826 0.00 0.00 0.00 3.18
233 234 4.440802 GCTCATTGTAGAGTGTGGGAGTAG 60.441 50.000 0.00 0.00 37.94 2.57
234 235 3.447586 GCTCATTGTAGAGTGTGGGAGTA 59.552 47.826 0.00 0.00 37.94 2.59
235 236 2.234908 GCTCATTGTAGAGTGTGGGAGT 59.765 50.000 0.00 0.00 37.94 3.85
236 237 2.419297 GGCTCATTGTAGAGTGTGGGAG 60.419 54.545 0.00 0.00 37.94 4.30
237 238 1.555075 GGCTCATTGTAGAGTGTGGGA 59.445 52.381 0.00 0.00 37.94 4.37
238 239 1.740380 CGGCTCATTGTAGAGTGTGGG 60.740 57.143 0.00 0.00 37.94 4.61
239 240 1.645034 CGGCTCATTGTAGAGTGTGG 58.355 55.000 0.00 0.00 37.94 4.17
240 241 1.066858 ACCGGCTCATTGTAGAGTGTG 60.067 52.381 0.00 0.00 37.94 3.82
241 242 1.066858 CACCGGCTCATTGTAGAGTGT 60.067 52.381 0.00 0.00 37.94 3.55
242 243 1.645034 CACCGGCTCATTGTAGAGTG 58.355 55.000 0.00 0.00 37.94 3.51
243 244 0.537188 CCACCGGCTCATTGTAGAGT 59.463 55.000 0.00 0.00 37.94 3.24
244 245 0.811616 GCCACCGGCTCATTGTAGAG 60.812 60.000 0.00 0.00 46.69 2.43
245 246 1.220749 GCCACCGGCTCATTGTAGA 59.779 57.895 0.00 0.00 46.69 2.59
246 247 3.813596 GCCACCGGCTCATTGTAG 58.186 61.111 0.00 0.00 46.69 2.74
257 258 4.015406 TACACTGGGCTGCCACCG 62.015 66.667 22.05 10.15 0.00 4.94
258 259 2.359975 GTACACTGGGCTGCCACC 60.360 66.667 22.05 4.31 0.00 4.61
259 260 2.359975 GGTACACTGGGCTGCCAC 60.360 66.667 22.05 10.55 0.00 5.01
260 261 4.015406 CGGTACACTGGGCTGCCA 62.015 66.667 22.05 5.83 0.00 4.92
261 262 4.778143 CCGGTACACTGGGCTGCC 62.778 72.222 11.05 11.05 38.76 4.85
262 263 3.702048 TCCGGTACACTGGGCTGC 61.702 66.667 0.00 0.00 42.72 5.25
263 264 2.264794 GTCCGGTACACTGGGCTG 59.735 66.667 0.00 0.00 43.58 4.85
305 306 9.160496 GATTGGCTTGATTATTACTCTATGAGG 57.840 37.037 0.00 0.00 33.35 3.86
309 310 9.866655 TTTGGATTGGCTTGATTATTACTCTAT 57.133 29.630 0.00 0.00 0.00 1.98
491 511 2.993853 CTGAGGTTGAGGGGGAGC 59.006 66.667 0.00 0.00 0.00 4.70
492 512 2.674220 GGCTGAGGTTGAGGGGGAG 61.674 68.421 0.00 0.00 0.00 4.30
493 513 2.610859 GGCTGAGGTTGAGGGGGA 60.611 66.667 0.00 0.00 0.00 4.81
494 514 4.101448 CGGCTGAGGTTGAGGGGG 62.101 72.222 0.00 0.00 0.00 5.40
495 515 3.316573 GACGGCTGAGGTTGAGGGG 62.317 68.421 0.00 0.00 0.00 4.79
496 516 2.266055 GACGGCTGAGGTTGAGGG 59.734 66.667 0.00 0.00 0.00 4.30
497 517 1.903877 ATGGACGGCTGAGGTTGAGG 61.904 60.000 0.00 0.00 0.00 3.86
498 518 0.460987 GATGGACGGCTGAGGTTGAG 60.461 60.000 0.00 0.00 0.00 3.02
499 519 0.904865 AGATGGACGGCTGAGGTTGA 60.905 55.000 0.00 0.00 0.00 3.18
500 520 0.036010 AAGATGGACGGCTGAGGTTG 60.036 55.000 0.00 0.00 0.00 3.77
501 521 0.036010 CAAGATGGACGGCTGAGGTT 60.036 55.000 0.00 0.00 0.00 3.50
502 522 1.599047 CAAGATGGACGGCTGAGGT 59.401 57.895 0.00 0.00 0.00 3.85
503 523 1.817099 GCAAGATGGACGGCTGAGG 60.817 63.158 0.00 0.00 0.00 3.86
520 540 1.523938 GGATCTAGCCGTTGGGTGC 60.524 63.158 0.00 0.00 34.28 5.01
533 553 3.083997 GGGCGTGGAGTGGGATCT 61.084 66.667 0.00 0.00 0.00 2.75
594 625 3.305720 GTGGAGGGAAAAAGGAAAGGTT 58.694 45.455 0.00 0.00 0.00 3.50
789 827 1.052617 GGGTTAAAAGGCTTTGGGCA 58.947 50.000 14.19 0.00 44.01 5.36
857 895 0.926720 AGTCTGCCCTCCTCCTCCTA 60.927 60.000 0.00 0.00 0.00 2.94
864 902 0.686112 GAGTGCTAGTCTGCCCTCCT 60.686 60.000 0.00 0.00 32.58 3.69
866 904 1.819905 GGAGTGCTAGTCTGCCCTC 59.180 63.158 0.00 0.00 36.86 4.30
871 909 1.073216 CGCAACGGAGTGCTAGTCTG 61.073 60.000 6.46 0.00 45.00 3.51
872 910 1.213013 CGCAACGGAGTGCTAGTCT 59.787 57.895 6.46 0.00 45.00 3.24
873 911 2.445438 GCGCAACGGAGTGCTAGTC 61.445 63.158 0.30 0.00 45.00 2.59
874 912 2.432628 GCGCAACGGAGTGCTAGT 60.433 61.111 0.30 0.00 45.00 2.57
875 913 3.188786 GGCGCAACGGAGTGCTAG 61.189 66.667 10.83 0.00 45.00 3.42
891 930 2.040544 GTGTGCAGATGGGAACGGG 61.041 63.158 0.00 0.00 0.00 5.28
915 954 4.772687 GGCGAGAAACCCGGGGAC 62.773 72.222 27.92 15.48 0.00 4.46
988 1028 4.899239 CTCCATGCCCGCCTCGTC 62.899 72.222 0.00 0.00 0.00 4.20
998 1038 4.899239 CCTCGTCGCCCTCCATGC 62.899 72.222 0.00 0.00 0.00 4.06
1198 1238 3.495124 GGTACGTACCAAGCACGAA 57.505 52.632 34.65 0.00 45.73 3.85
1248 1288 2.820330 ACCAAACCAAATCAAAGCACG 58.180 42.857 0.00 0.00 0.00 5.34
1273 1313 3.323403 CCACAACCAAAGCCCAGAAATAA 59.677 43.478 0.00 0.00 0.00 1.40
1274 1314 2.896685 CCACAACCAAAGCCCAGAAATA 59.103 45.455 0.00 0.00 0.00 1.40
1275 1315 1.693606 CCACAACCAAAGCCCAGAAAT 59.306 47.619 0.00 0.00 0.00 2.17
1276 1316 1.118838 CCACAACCAAAGCCCAGAAA 58.881 50.000 0.00 0.00 0.00 2.52
1277 1317 0.032615 ACCACAACCAAAGCCCAGAA 60.033 50.000 0.00 0.00 0.00 3.02
1291 1331 3.283684 CGCGAGCCCAAAACCACA 61.284 61.111 0.00 0.00 0.00 4.17
1308 1348 1.202359 ACAACGTGCACATCAAAACCC 60.202 47.619 18.64 0.00 0.00 4.11
1324 1364 4.332637 CACCTGCAGCGCCACAAC 62.333 66.667 8.66 0.00 0.00 3.32
1346 1387 2.037367 CCGTCTCCTGGTCCTCCA 59.963 66.667 0.00 0.00 42.05 3.86
1456 1497 4.275524 GCAGAGAGCACACACCTC 57.724 61.111 0.00 0.00 44.79 3.85
1506 1554 7.698130 GCAGTATGATAATGGACAAACTGAAAC 59.302 37.037 1.90 0.00 39.69 2.78
1821 1938 3.932710 TCAAATTGCTCCACATCGTACTC 59.067 43.478 0.00 0.00 0.00 2.59
2068 5980 1.696063 ATCATTTCGCCCATTCCTGG 58.304 50.000 0.00 0.00 42.73 4.45
2122 6034 7.539712 ACTAACGACAGATATGTTGGATTTG 57.460 36.000 12.28 2.64 0.00 2.32
2373 9123 7.607991 ACGAAATATGAGATCTTCCAAAGTTGT 59.392 33.333 0.00 0.00 0.00 3.32
2375 9125 7.066284 CCACGAAATATGAGATCTTCCAAAGTT 59.934 37.037 0.00 0.00 0.00 2.66
2469 9221 3.407424 TGGTGACTTCAGAACATGGAG 57.593 47.619 0.00 0.00 40.83 3.86
2471 9223 2.163010 GCATGGTGACTTCAGAACATGG 59.837 50.000 15.06 0.00 35.76 3.66
2472 9224 3.079578 AGCATGGTGACTTCAGAACATG 58.920 45.455 0.00 11.41 37.04 3.21
2473 9225 3.079578 CAGCATGGTGACTTCAGAACAT 58.920 45.455 20.20 0.00 0.00 2.71
2474 9226 2.158769 ACAGCATGGTGACTTCAGAACA 60.159 45.455 30.46 0.00 43.62 3.18
2503 9262 4.621034 CCATTGCAGAACCGAAATTGTTAC 59.379 41.667 0.00 0.00 0.00 2.50
2561 9321 4.262851 GGGCTTTCAAAGAATAAAAGGGCA 60.263 41.667 0.00 0.00 32.01 5.36
2562 9322 4.253685 GGGCTTTCAAAGAATAAAAGGGC 58.746 43.478 0.00 0.00 32.01 5.19
2611 9396 6.594788 AAAGCATACCTGAAATGACATTGT 57.405 33.333 0.34 0.00 0.00 2.71
2640 9425 7.834068 TTATAAAGCAGTCAGAAGCAACTAG 57.166 36.000 0.00 0.00 0.00 2.57
2681 9466 3.472283 ACAAAAGACCATTGCAATGCA 57.528 38.095 30.15 2.72 36.47 3.96
2727 9512 6.768029 GCAGTTCAATGCAAAAACATCTTA 57.232 33.333 10.61 0.00 45.77 2.10
2728 9513 5.662211 GCAGTTCAATGCAAAAACATCTT 57.338 34.783 10.61 0.00 45.77 2.40
2739 9524 5.334028 GGGTTATGTTTTTGCAGTTCAATGC 60.334 40.000 0.00 0.00 46.68 3.56
2740 9525 5.990996 AGGGTTATGTTTTTGCAGTTCAATG 59.009 36.000 0.00 0.00 34.12 2.82
2742 9527 5.606348 AGGGTTATGTTTTTGCAGTTCAA 57.394 34.783 0.00 0.00 0.00 2.69
2744 9529 9.869757 AATATAAGGGTTATGTTTTTGCAGTTC 57.130 29.630 0.00 0.00 0.00 3.01
2753 9538 9.768662 CCGTACAGTAATATAAGGGTTATGTTT 57.231 33.333 0.00 0.00 30.89 2.83
2755 9540 8.710749 TCCGTACAGTAATATAAGGGTTATGT 57.289 34.615 0.00 0.00 0.00 2.29
2756 9541 8.248945 CCTCCGTACAGTAATATAAGGGTTATG 58.751 40.741 0.00 0.00 0.00 1.90
2758 9543 6.721208 CCCTCCGTACAGTAATATAAGGGTTA 59.279 42.308 0.00 0.00 36.88 2.85
2760 9545 5.082425 CCCTCCGTACAGTAATATAAGGGT 58.918 45.833 0.00 0.00 36.88 4.34
2761 9546 5.327732 TCCCTCCGTACAGTAATATAAGGG 58.672 45.833 0.00 0.00 41.93 3.95
2762 9547 6.008960 ACTCCCTCCGTACAGTAATATAAGG 58.991 44.000 0.00 0.00 0.00 2.69
2763 9548 8.510505 GTTACTCCCTCCGTACAGTAATATAAG 58.489 40.741 4.98 0.00 34.63 1.73
2764 9549 8.220559 AGTTACTCCCTCCGTACAGTAATATAA 58.779 37.037 4.98 0.00 34.63 0.98
2767 9552 6.006275 AGTTACTCCCTCCGTACAGTAATA 57.994 41.667 4.98 0.00 34.63 0.98
2769 9554 4.307032 AGTTACTCCCTCCGTACAGTAA 57.693 45.455 0.00 0.00 0.00 2.24
2770 9555 4.307032 AAGTTACTCCCTCCGTACAGTA 57.693 45.455 0.00 0.00 0.00 2.74
2771 9556 2.895242 AGTTACTCCCTCCGTACAGT 57.105 50.000 0.00 0.00 0.00 3.55
2772 9557 4.532314 AAAAGTTACTCCCTCCGTACAG 57.468 45.455 0.00 0.00 0.00 2.74
2775 9560 6.189859 TGAGATAAAAGTTACTCCCTCCGTA 58.810 40.000 0.00 0.00 0.00 4.02
2776 9561 5.021458 TGAGATAAAAGTTACTCCCTCCGT 58.979 41.667 0.00 0.00 0.00 4.69
2777 9562 5.452077 CCTGAGATAAAAGTTACTCCCTCCG 60.452 48.000 0.00 0.00 0.00 4.63
2807 9607 3.144506 ACAAAGAGCACTGAATCCACAG 58.855 45.455 0.00 0.00 42.78 3.66
2873 9673 6.926313 TGCGCCCTTGTTAGTTATTATTTTT 58.074 32.000 4.18 0.00 0.00 1.94
2874 9674 6.405397 CCTGCGCCCTTGTTAGTTATTATTTT 60.405 38.462 4.18 0.00 0.00 1.82
2875 9675 5.067283 CCTGCGCCCTTGTTAGTTATTATTT 59.933 40.000 4.18 0.00 0.00 1.40
2876 9676 4.578928 CCTGCGCCCTTGTTAGTTATTATT 59.421 41.667 4.18 0.00 0.00 1.40
2877 9677 4.134563 CCTGCGCCCTTGTTAGTTATTAT 58.865 43.478 4.18 0.00 0.00 1.28
2878 9678 3.198200 TCCTGCGCCCTTGTTAGTTATTA 59.802 43.478 4.18 0.00 0.00 0.98
2879 9679 2.026636 TCCTGCGCCCTTGTTAGTTATT 60.027 45.455 4.18 0.00 0.00 1.40
2880 9680 1.557832 TCCTGCGCCCTTGTTAGTTAT 59.442 47.619 4.18 0.00 0.00 1.89
2881 9681 0.978151 TCCTGCGCCCTTGTTAGTTA 59.022 50.000 4.18 0.00 0.00 2.24
2882 9682 0.328258 ATCCTGCGCCCTTGTTAGTT 59.672 50.000 4.18 0.00 0.00 2.24
2883 9683 1.134491 GTATCCTGCGCCCTTGTTAGT 60.134 52.381 4.18 0.00 0.00 2.24
2884 9684 1.583054 GTATCCTGCGCCCTTGTTAG 58.417 55.000 4.18 0.00 0.00 2.34
2885 9685 0.179468 GGTATCCTGCGCCCTTGTTA 59.821 55.000 4.18 0.00 0.00 2.41
2886 9686 1.077716 GGTATCCTGCGCCCTTGTT 60.078 57.895 4.18 0.00 0.00 2.83
2887 9687 1.635817 ATGGTATCCTGCGCCCTTGT 61.636 55.000 4.18 0.00 0.00 3.16
2888 9688 0.466189 AATGGTATCCTGCGCCCTTG 60.466 55.000 4.18 0.00 0.00 3.61
2889 9689 0.466189 CAATGGTATCCTGCGCCCTT 60.466 55.000 4.18 0.00 0.00 3.95
2890 9690 1.149174 CAATGGTATCCTGCGCCCT 59.851 57.895 4.18 0.00 0.00 5.19
2891 9691 2.555547 GCAATGGTATCCTGCGCCC 61.556 63.158 4.18 0.00 0.00 6.13
2892 9692 2.555547 GGCAATGGTATCCTGCGCC 61.556 63.158 4.18 0.00 36.93 6.53
2893 9693 1.823470 TGGCAATGGTATCCTGCGC 60.823 57.895 0.00 0.00 36.93 6.09
2894 9694 0.464373 AGTGGCAATGGTATCCTGCG 60.464 55.000 0.00 0.00 36.93 5.18
2907 9707 6.001460 AGCTGTTAGTAATTTTACAGTGGCA 58.999 36.000 0.00 0.00 40.02 4.92
2914 9714 8.039538 AGGACCTACAGCTGTTAGTAATTTTAC 58.960 37.037 27.06 8.54 0.00 2.01
2915 9715 8.142485 AGGACCTACAGCTGTTAGTAATTTTA 57.858 34.615 27.06 1.01 0.00 1.52
2929 9729 2.427812 GTTGTCTCCTAGGACCTACAGC 59.572 54.545 7.62 10.78 35.54 4.40
2962 9762 8.822855 CACACAGTATATAAATAAAACAGGCGA 58.177 33.333 0.00 0.00 0.00 5.54
2977 9777 7.647715 GTGAAGCAAAACAAACACACAGTATAT 59.352 33.333 0.00 0.00 0.00 0.86
2980 9780 5.048364 AGTGAAGCAAAACAAACACACAGTA 60.048 36.000 0.00 0.00 0.00 2.74
2981 9781 3.987220 GTGAAGCAAAACAAACACACAGT 59.013 39.130 0.00 0.00 0.00 3.55
2982 9782 4.090354 CAGTGAAGCAAAACAAACACACAG 59.910 41.667 0.00 0.00 0.00 3.66
2984 9784 4.233789 TCAGTGAAGCAAAACAAACACAC 58.766 39.130 0.00 0.00 0.00 3.82
2988 9788 4.567959 AGCAATCAGTGAAGCAAAACAAAC 59.432 37.500 19.30 0.00 0.00 2.93
2989 9789 4.757594 AGCAATCAGTGAAGCAAAACAAA 58.242 34.783 19.30 0.00 0.00 2.83
2990 9790 4.142204 TGAGCAATCAGTGAAGCAAAACAA 60.142 37.500 19.30 0.59 0.00 2.83
2991 9791 3.380954 TGAGCAATCAGTGAAGCAAAACA 59.619 39.130 19.30 12.06 0.00 2.83
2996 9796 2.810274 GACTTGAGCAATCAGTGAAGCA 59.190 45.455 19.30 2.59 0.00 3.91
2997 9797 2.159734 CGACTTGAGCAATCAGTGAAGC 60.160 50.000 11.75 11.75 0.00 3.86
2998 9798 2.159734 GCGACTTGAGCAATCAGTGAAG 60.160 50.000 0.00 0.00 34.19 3.02
2999 9799 1.800586 GCGACTTGAGCAATCAGTGAA 59.199 47.619 0.00 0.00 34.19 3.18
3000 9800 1.270252 TGCGACTTGAGCAATCAGTGA 60.270 47.619 0.00 0.00 42.18 3.41
3001 9801 1.150827 TGCGACTTGAGCAATCAGTG 58.849 50.000 0.00 0.00 42.18 3.66
3002 9802 3.612517 TGCGACTTGAGCAATCAGT 57.387 47.368 0.00 0.00 42.18 3.41
3008 9808 1.094650 TGCTGTTTGCGACTTGAGCA 61.095 50.000 0.00 0.00 46.63 4.26
3009 9809 0.385223 CTGCTGTTTGCGACTTGAGC 60.385 55.000 0.00 0.00 46.63 4.26
3010 9810 0.940126 ACTGCTGTTTGCGACTTGAG 59.060 50.000 0.00 0.00 46.63 3.02
3011 9811 1.378531 AACTGCTGTTTGCGACTTGA 58.621 45.000 2.72 0.00 46.63 3.02
3012 9812 2.031560 TGTAACTGCTGTTTGCGACTTG 59.968 45.455 14.54 0.00 46.63 3.16
3013 9813 2.285083 TGTAACTGCTGTTTGCGACTT 58.715 42.857 14.54 0.00 46.63 3.01
3014 9814 1.948104 TGTAACTGCTGTTTGCGACT 58.052 45.000 14.54 0.00 46.63 4.18
3015 9815 2.969443 ATGTAACTGCTGTTTGCGAC 57.031 45.000 14.54 7.17 46.63 5.19
3016 9816 3.980646 AAATGTAACTGCTGTTTGCGA 57.019 38.095 14.54 0.00 46.63 5.10
3017 9817 3.361917 GCAAAATGTAACTGCTGTTTGCG 60.362 43.478 14.54 0.00 46.63 4.85
3025 9825 6.966435 ATTGGTATTGCAAAATGTAACTGC 57.034 33.333 1.71 0.00 0.00 4.40
3041 9841 9.975218 ACCAAGACAACTAAAGATAATTGGTAT 57.025 29.630 4.06 0.00 44.42 2.73
3071 9871 9.745880 CACTGACAAGTCTAACTAGAAAGTAAA 57.254 33.333 0.00 0.00 31.44 2.01
3077 9877 6.736123 GTCACACTGACAAGTCTAACTAGAA 58.264 40.000 0.00 0.00 46.22 2.10
3097 9897 4.746611 CAGGAAAGGCAAAATCAAAGTCAC 59.253 41.667 0.00 0.00 0.00 3.67
3127 9927 6.444704 AGATAGAGGTAAGGAGGATTGTTGA 58.555 40.000 0.00 0.00 0.00 3.18
3137 9937 3.052109 TGGGCAGAAGATAGAGGTAAGGA 60.052 47.826 0.00 0.00 0.00 3.36
3194 9995 3.880490 TCAAGGCATCTTTAACACAACGT 59.120 39.130 0.00 0.00 0.00 3.99
3207 10008 7.671495 AACATTGGTAAAATTTCAAGGCATC 57.329 32.000 0.00 0.00 0.00 3.91
3261 10063 6.591448 GGGAATAGCCAGAAACAATTGAAAAG 59.409 38.462 13.59 0.00 38.95 2.27
3268 10070 3.016736 CGTGGGAATAGCCAGAAACAAT 58.983 45.455 0.00 0.00 38.95 2.71
3419 10221 1.200948 GAATCAGGCCAGTTTCAGTGC 59.799 52.381 5.01 0.00 0.00 4.40
3422 10224 1.272092 TGGGAATCAGGCCAGTTTCAG 60.272 52.381 17.70 0.00 0.00 3.02
3429 10231 4.541250 AGAATTATTGGGAATCAGGCCA 57.459 40.909 5.01 0.00 0.00 5.36
3463 10265 3.576078 ATCGGTTCCATTGCCTTCATA 57.424 42.857 0.00 0.00 0.00 2.15
3573 10375 3.186119 CTCCTCAAGACAATCTTCTCGC 58.814 50.000 0.00 0.00 33.78 5.03
3624 10426 1.808133 GCACCATCTTCCGGATCTGAC 60.808 57.143 4.15 0.00 31.27 3.51
3810 10612 8.758715 GCATAATATTCAGCTTCATTTTCAACC 58.241 33.333 0.00 0.00 0.00 3.77
3819 10621 5.213891 TCTCCGCATAATATTCAGCTTCA 57.786 39.130 9.51 0.00 0.00 3.02
3969 10771 3.462483 TCACCAAGAAACTCGCAACTA 57.538 42.857 0.00 0.00 0.00 2.24
3975 10777 4.537015 GGTTCAAATCACCAAGAAACTCG 58.463 43.478 0.00 0.00 34.04 4.18
3982 10784 2.875296 TGAGGGGTTCAAATCACCAAG 58.125 47.619 0.00 0.00 35.80 3.61
3996 10798 2.419851 GCACTTCTGAAGAGATGAGGGG 60.420 54.545 23.36 0.00 0.00 4.79
4019 10821 6.239829 GGATTCTGGATCAGACATAAGTGGAT 60.240 42.308 0.00 0.00 40.46 3.41
4035 10837 2.242965 ACATGCAGATTGGGATTCTGGA 59.757 45.455 0.00 0.39 44.19 3.86
4077 10879 8.336235 TCCAGAACTTCCATACCATCTTTAAAT 58.664 33.333 0.00 0.00 0.00 1.40
4109 10911 4.703645 TCTCTTGGTGATACTTCAGACG 57.296 45.455 0.00 0.00 30.85 4.18
4207 11009 5.945191 TGGAGCAATCAGTTGATGTATTTGA 59.055 36.000 0.00 0.00 37.53 2.69
4208 11010 6.032094 GTGGAGCAATCAGTTGATGTATTTG 58.968 40.000 0.00 0.00 37.53 2.32
4303 11105 6.480320 GGTACAGAGCATACTGAATTTACCAG 59.520 42.308 11.41 0.00 40.63 4.00
4347 11149 3.194861 GCCGTCATCATTAGTAACAGCA 58.805 45.455 0.00 0.00 0.00 4.41
4361 11163 0.745845 GGACTTGAGCATGCCGTCAT 60.746 55.000 15.66 0.00 0.00 3.06
4382 11184 5.064452 CCTTTAGTGCAGTTATCTTCAGCAG 59.936 44.000 0.00 0.00 35.66 4.24
4416 11218 1.880027 GAATCCAACGCACTGTCCTTT 59.120 47.619 0.00 0.00 0.00 3.11
4421 11223 1.523758 GGAAGAATCCAACGCACTGT 58.476 50.000 0.00 0.00 45.79 3.55
4482 11284 0.036858 GAACCTCAGTGGCACTCTCC 60.037 60.000 19.13 0.29 40.22 3.71
4503 11305 8.205512 TGACTTGTAGACACTTGGTAATTTGTA 58.794 33.333 0.00 0.00 0.00 2.41
4634 11436 6.045955 TCAAAAACATTTGGTGCCTCTAAAC 58.954 36.000 1.86 0.00 32.99 2.01
4638 11440 4.751767 TTCAAAAACATTTGGTGCCTCT 57.248 36.364 1.86 0.00 32.99 3.69
4736 11538 1.912043 ACCCAGAATTCTCACCTGAGG 59.088 52.381 4.57 0.00 42.30 3.86
5232 12532 7.987458 ACTAAACAACTGAGATGAACTTCTTCA 59.013 33.333 0.00 0.00 40.77 3.02
5264 12564 6.580788 TGTTCAAACACATCAATCAACCAAT 58.419 32.000 0.00 0.00 33.17 3.16
5292 12611 5.276461 TCATCAAAGCTACGACCATATGT 57.724 39.130 1.24 0.00 0.00 2.29
5308 12627 9.681692 CTTGAAACATCAAACACTATTCATCAA 57.318 29.630 0.00 0.00 0.00 2.57
5309 12628 8.849168 ACTTGAAACATCAAACACTATTCATCA 58.151 29.630 0.00 0.00 0.00 3.07
5338 12657 7.383687 TCCTTCTGTTCGTATTTAGACAACAT 58.616 34.615 0.00 0.00 0.00 2.71
5339 12658 6.751157 TCCTTCTGTTCGTATTTAGACAACA 58.249 36.000 0.00 0.00 0.00 3.33
5394 12713 7.217200 AGACTGCAATAACAAGACTCAGTAAA 58.783 34.615 0.00 0.00 33.97 2.01
5431 12750 9.931698 TGTAAGAACTAACATAGGGAGAGAATA 57.068 33.333 0.00 0.00 0.00 1.75
5437 12758 8.936864 CAAACTTGTAAGAACTAACATAGGGAG 58.063 37.037 0.00 0.00 0.00 4.30
5481 12802 7.041372 GCCAGAAATGTTCAGTAAGTTTCAGTA 60.041 37.037 0.00 0.00 32.66 2.74
5676 12997 3.531538 TGTCGGAAATACTTGAGATGGC 58.468 45.455 0.00 0.00 0.00 4.40
5704 13025 1.078848 GAGAGACGGGCATTGTGCT 60.079 57.895 1.64 0.00 44.28 4.40
5765 13086 0.107410 TGCTTTGGTGTCTTCCGTGT 60.107 50.000 0.00 0.00 0.00 4.49
5791 13112 7.608761 GTCATCTATATTCTCTACCGGAGTCTT 59.391 40.741 9.46 0.00 42.40 3.01
5853 13174 4.199432 CAGTACTGCAGTCATCTCCTTT 57.801 45.455 25.56 0.00 0.00 3.11
5889 13210 3.198635 CCTCAGCCAGTTTATCCTCTTCA 59.801 47.826 0.00 0.00 0.00 3.02
6057 13378 7.094634 TGCACTTCATCTGTTTTATTCTCTTCC 60.095 37.037 0.00 0.00 0.00 3.46
6065 13386 5.565439 GCCTGTTGCACTTCATCTGTTTTAT 60.565 40.000 0.00 0.00 40.77 1.40
6066 13387 4.261572 GCCTGTTGCACTTCATCTGTTTTA 60.262 41.667 0.00 0.00 40.77 1.52
6067 13388 3.491447 GCCTGTTGCACTTCATCTGTTTT 60.491 43.478 0.00 0.00 40.77 2.43
6101 13422 2.906389 TCTGGAGCCTGCTTCTTTTCTA 59.094 45.455 0.00 0.00 0.00 2.10
6136 13457 0.042188 CTTTGCACCACGTTCGTCTG 60.042 55.000 0.00 0.00 0.00 3.51
6146 13467 0.040058 ATGATCCCTGCTTTGCACCA 59.960 50.000 0.00 0.00 33.79 4.17
6191 13512 0.471211 TCCCTCCAGACCGACTGTTT 60.471 55.000 8.31 0.00 44.40 2.83
6453 13774 1.711206 TGTCGACGTTGTTGTTGTCA 58.289 45.000 11.62 0.00 32.91 3.58
6621 13945 2.672961 TCCAGTCCTCACGCAAATAG 57.327 50.000 0.00 0.00 0.00 1.73
6735 14067 1.290203 ACAGCGACATATTTCGGCAG 58.710 50.000 12.84 5.31 39.50 4.85
6805 14145 5.204409 TGAGACCAAACAACATACGTACT 57.796 39.130 0.00 0.00 0.00 2.73
6995 14335 8.736244 GGAATGGAGTAAATAAAGTAGCAACAA 58.264 33.333 0.00 0.00 0.00 2.83
7017 14357 2.226330 TGCCGCGCTATATTTTGGAAT 58.774 42.857 5.56 0.00 0.00 3.01
7019 14359 1.225855 CTGCCGCGCTATATTTTGGA 58.774 50.000 5.56 0.00 0.00 3.53
7033 14377 4.107051 CCTTGGAAAGCGCTGCCG 62.107 66.667 12.58 4.06 44.44 5.69
7035 14379 1.081175 GAACCTTGGAAAGCGCTGC 60.081 57.895 12.58 6.29 44.44 5.25
7036 14380 0.667993 TTGAACCTTGGAAAGCGCTG 59.332 50.000 12.58 0.00 44.44 5.18
7037 14381 0.668535 GTTGAACCTTGGAAAGCGCT 59.331 50.000 2.64 2.64 44.44 5.92
7041 14385 4.159506 TGGTCAAAGTTGAACCTTGGAAAG 59.840 41.667 6.80 0.00 44.20 2.62
7044 14388 3.374042 TGGTCAAAGTTGAACCTTGGA 57.626 42.857 6.80 0.00 44.20 3.53
7045 14389 5.782893 TTATGGTCAAAGTTGAACCTTGG 57.217 39.130 6.80 0.00 44.20 3.61
7047 14391 8.017418 TGAATTTATGGTCAAAGTTGAACCTT 57.983 30.769 6.62 6.50 44.20 3.50
7071 15605 0.716108 GCAGTCGATCTCGTTGGTTG 59.284 55.000 0.00 0.00 40.80 3.77
7083 15617 4.656117 TGCTTTCGCCGCAGTCGA 62.656 61.111 0.00 0.00 34.66 4.20
7087 15621 1.139163 AATTTTTGCTTTCGCCGCAG 58.861 45.000 0.00 0.00 38.80 5.18
7093 15627 6.840789 GTGCTTCAACTTAATTTTTGCTTTCG 59.159 34.615 0.00 0.00 0.00 3.46
7095 15629 6.533367 TCGTGCTTCAACTTAATTTTTGCTTT 59.467 30.769 0.00 0.00 0.00 3.51
7096 15630 6.039616 TCGTGCTTCAACTTAATTTTTGCTT 58.960 32.000 0.00 0.00 0.00 3.91
7106 15640 4.272504 CCTCTGTTTTCGTGCTTCAACTTA 59.727 41.667 0.00 0.00 0.00 2.24
7108 15642 2.614057 CCTCTGTTTTCGTGCTTCAACT 59.386 45.455 0.00 0.00 0.00 3.16
7109 15643 2.612212 TCCTCTGTTTTCGTGCTTCAAC 59.388 45.455 0.00 0.00 0.00 3.18
7110 15644 2.912771 TCCTCTGTTTTCGTGCTTCAA 58.087 42.857 0.00 0.00 0.00 2.69
7111 15645 2.613026 TCCTCTGTTTTCGTGCTTCA 57.387 45.000 0.00 0.00 0.00 3.02
7124 15739 8.335532 TGTTCCAAAATATAGTGTTTCCTCTG 57.664 34.615 0.00 0.00 0.00 3.35
7125 15740 8.383175 TCTGTTCCAAAATATAGTGTTTCCTCT 58.617 33.333 0.00 0.00 0.00 3.69
7126 15741 8.561738 TCTGTTCCAAAATATAGTGTTTCCTC 57.438 34.615 0.00 0.00 0.00 3.71
7128 15743 7.148069 CCCTCTGTTCCAAAATATAGTGTTTCC 60.148 40.741 0.00 0.00 0.00 3.13
7132 15747 6.215636 ACTCCCTCTGTTCCAAAATATAGTGT 59.784 38.462 0.00 0.00 0.00 3.55
7183 15798 2.588314 CCAGCCTCTGCATCGAGC 60.588 66.667 0.00 0.00 45.96 5.03
7190 15805 0.037447 GGATTATCCCCAGCCTCTGC 59.963 60.000 0.00 0.00 37.95 4.26
7334 16154 3.952967 TGGCTAGCATGCAATTGATGTTA 59.047 39.130 21.98 10.90 34.04 2.41
7478 16298 2.758423 TGCGTTTATAGAGGAGCAGTGA 59.242 45.455 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.