Multiple sequence alignment - TraesCS5D01G286500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G286500 chr5D 100.000 4313 0 0 1 4313 386736253 386731941 0.000000e+00 7965.0
1 TraesCS5D01G286500 chr5B 88.621 2408 161 48 1953 4312 464589463 464587121 0.000000e+00 2824.0
2 TraesCS5D01G286500 chr5B 89.975 1207 96 16 708 1903 464590654 464589462 0.000000e+00 1535.0
3 TraesCS5D01G286500 chr5B 93.478 552 23 8 1 546 464592835 464592291 0.000000e+00 808.0
4 TraesCS5D01G286500 chr5B 88.344 163 18 1 590 752 464590976 464590815 1.220000e-45 195.0
5 TraesCS5D01G286500 chr5B 94.118 51 3 0 588 638 466175977 466175927 1.290000e-10 78.7
6 TraesCS5D01G286500 chr5B 83.824 68 9 2 639 704 547336964 547337031 3.600000e-06 63.9
7 TraesCS5D01G286500 chr5A 91.624 1361 80 16 1953 3310 488410293 488408964 0.000000e+00 1851.0
8 TraesCS5D01G286500 chr5A 86.327 1236 101 28 706 1903 488411497 488410292 0.000000e+00 1284.0
9 TraesCS5D01G286500 chr5A 92.099 405 14 4 1 389 488416166 488415764 4.870000e-154 555.0
10 TraesCS5D01G286500 chr5A 93.258 356 17 2 3965 4313 488408966 488408611 6.390000e-143 518.0
11 TraesCS5D01G286500 chr5A 86.316 95 13 0 491 585 219236817 219236911 2.120000e-18 104.0
12 TraesCS5D01G286500 chr1D 91.579 95 8 0 491 585 441296100 441296194 9.730000e-27 132.0
13 TraesCS5D01G286500 chr6B 87.368 95 12 0 491 585 5545434 5545528 4.560000e-20 110.0
14 TraesCS5D01G286500 chr2D 87.500 96 11 1 491 585 316285692 316285597 4.560000e-20 110.0
15 TraesCS5D01G286500 chr2A 85.263 95 14 0 491 585 747249243 747249149 9.870000e-17 99.0
16 TraesCS5D01G286500 chr2A 73.783 267 46 15 3395 3641 5274592 5274854 2.760000e-12 84.2
17 TraesCS5D01G286500 chr4D 85.417 96 10 4 492 585 457524686 457524779 3.550000e-16 97.1
18 TraesCS5D01G286500 chr4D 85.915 71 7 3 638 706 321931074 321931005 5.980000e-09 73.1
19 TraesCS5D01G286500 chr7A 84.211 95 15 0 491 585 685926968 685927062 4.590000e-15 93.5
20 TraesCS5D01G286500 chr7B 86.585 82 9 2 491 571 720130177 720130257 5.940000e-14 89.8
21 TraesCS5D01G286500 chr4B 88.406 69 5 3 635 701 399190787 399190854 3.580000e-11 80.5
22 TraesCS5D01G286500 chr1A 83.824 68 9 2 639 704 262849429 262849362 3.600000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G286500 chr5D 386731941 386736253 4312 True 7965.000000 7965 100.0000 1 4313 1 chr5D.!!$R1 4312
1 TraesCS5D01G286500 chr5B 464587121 464592835 5714 True 1340.500000 2824 90.1045 1 4312 4 chr5B.!!$R2 4311
2 TraesCS5D01G286500 chr5A 488408611 488411497 2886 True 1217.666667 1851 90.4030 706 4313 3 chr5A.!!$R2 3607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
685 2062 0.767375 TGCAGAGGCTGGGGATAATC 59.233 55.0 0.00 0.0 41.91 1.75 F
1002 2508 0.168128 CACGAGTTCGGCCAAAATCC 59.832 55.0 2.24 0.0 44.95 3.01 F
1914 3437 0.116342 TTGCTACTCCCTCAGTCCCA 59.884 55.0 0.00 0.0 36.43 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 3071 0.036010 ATCACCTCCAAAGCGACAGG 60.036 55.0 0.0 0.0 0.0 4.00 R
1924 3447 0.037605 CTCCGTCCCAAAGTAAGCGT 60.038 55.0 0.0 0.0 0.0 5.07 R
3750 5301 0.691332 GGGTCCGTCTTCCTTCCTTT 59.309 55.0 0.0 0.0 0.0 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 0.879090 CCGTGGCACCCTTTTTAGTC 59.121 55.000 12.86 0.00 0.00 2.59
136 137 5.355350 ACTGGATAAGCTTATGTCTTGCAAC 59.645 40.000 23.51 5.67 0.00 4.17
137 138 5.252547 TGGATAAGCTTATGTCTTGCAACA 58.747 37.500 23.51 0.00 0.00 3.33
178 180 6.752351 ACTGTCATGTTCGTGTAGATAATCAC 59.248 38.462 0.00 0.00 0.00 3.06
263 265 3.346315 TGGATCAGTGCGATTTTGATGT 58.654 40.909 0.00 0.00 33.17 3.06
282 284 2.563620 TGTATCGCCACCTGACTTTGTA 59.436 45.455 0.00 0.00 0.00 2.41
367 369 2.966050 AGGTTCATCAGCTCGTCTTTC 58.034 47.619 0.00 0.00 0.00 2.62
373 375 1.743252 CAGCTCGTCTTTCTGGCCC 60.743 63.158 0.00 0.00 0.00 5.80
462 464 2.037121 TGCGGACTTGAGATGAACTTCA 59.963 45.455 0.00 0.00 0.00 3.02
463 465 3.265791 GCGGACTTGAGATGAACTTCAT 58.734 45.455 3.80 3.80 40.34 2.57
464 466 4.081697 TGCGGACTTGAGATGAACTTCATA 60.082 41.667 4.16 0.00 37.20 2.15
465 467 4.268884 GCGGACTTGAGATGAACTTCATAC 59.731 45.833 4.16 3.48 37.20 2.39
466 468 5.410924 CGGACTTGAGATGAACTTCATACA 58.589 41.667 4.16 5.81 37.20 2.29
472 474 8.589338 ACTTGAGATGAACTTCATACAGTACTT 58.411 33.333 4.16 0.00 37.20 2.24
494 496 8.685838 ACTTTGTTGCTACTTTATTTACTCCA 57.314 30.769 0.00 0.00 0.00 3.86
510 516 6.554334 TTACTCCATTCCAAAATATAGCGC 57.446 37.500 0.00 0.00 0.00 5.92
512 518 2.811431 TCCATTCCAAAATATAGCGCGG 59.189 45.455 8.83 0.00 0.00 6.46
513 519 2.584791 CATTCCAAAATATAGCGCGGC 58.415 47.619 8.83 0.00 0.00 6.53
514 520 1.669604 TTCCAAAATATAGCGCGGCA 58.330 45.000 8.83 0.00 0.00 5.69
548 1744 7.384932 CCAAGGTTCAACTTTGACCATAAATTC 59.615 37.037 13.76 0.00 37.36 2.17
560 1756 5.943416 TGACCATAAATTCAACCAACGAGAT 59.057 36.000 0.00 0.00 0.00 2.75
564 1760 4.663636 AAATTCAACCAACGAGATCGAC 57.336 40.909 9.58 0.00 43.02 4.20
570 1766 2.202623 AACGAGATCGACTGCGGC 60.203 61.111 9.58 0.00 43.02 6.53
572 1768 4.237809 CGAGATCGACTGCGGCGA 62.238 66.667 12.98 13.13 43.02 5.54
573 1769 2.102357 GAGATCGACTGCGGCGAA 59.898 61.111 12.98 0.00 41.52 4.70
601 1878 7.161900 GCAAAAATTAAGTTGAAGCACGAAAAC 59.838 33.333 0.00 0.00 0.00 2.43
602 1879 7.820044 AAAATTAAGTTGAAGCACGAAAACA 57.180 28.000 0.00 0.00 0.00 2.83
603 1880 7.449934 AAATTAAGTTGAAGCACGAAAACAG 57.550 32.000 0.00 0.00 0.00 3.16
605 1882 3.951979 AGTTGAAGCACGAAAACAGAG 57.048 42.857 0.00 0.00 0.00 3.35
609 1886 3.275143 TGAAGCACGAAAACAGAGGAAA 58.725 40.909 0.00 0.00 0.00 3.13
626 1903 7.942341 ACAGAGGAAACACTATATTTTGGAACA 59.058 33.333 0.00 0.00 0.00 3.18
629 1906 8.567285 AGGAAACACTATATTTTGGAACAGAG 57.433 34.615 0.00 0.00 42.39 3.35
667 1944 1.198408 AGTTGTGTGCATTGCTCGATG 59.802 47.619 10.49 0.00 0.00 3.84
685 2062 0.767375 TGCAGAGGCTGGGGATAATC 59.233 55.000 0.00 0.00 41.91 1.75
693 2070 2.224892 GGCTGGGGATAATCCTCCTTTC 60.225 54.545 0.00 0.00 35.67 2.62
801 2286 7.889589 TGACAATTGTTGTAGTATCAGACTG 57.110 36.000 13.36 0.00 45.52 3.51
955 2461 4.402793 CCAGATACTAGTAGTTGGCACTGT 59.597 45.833 17.69 0.00 34.06 3.55
1000 2506 1.156736 CTCACGAGTTCGGCCAAAAT 58.843 50.000 2.24 0.00 44.95 1.82
1001 2507 1.128692 CTCACGAGTTCGGCCAAAATC 59.871 52.381 2.24 0.00 44.95 2.17
1002 2508 0.168128 CACGAGTTCGGCCAAAATCC 59.832 55.000 2.24 0.00 44.95 3.01
1208 2719 1.327303 GTCTGATCCGATCTGGCTCT 58.673 55.000 11.50 0.00 37.80 4.09
1209 2720 1.686052 GTCTGATCCGATCTGGCTCTT 59.314 52.381 11.50 0.00 37.80 2.85
1210 2721 2.102252 GTCTGATCCGATCTGGCTCTTT 59.898 50.000 11.50 0.00 37.80 2.52
1211 2722 2.768527 TCTGATCCGATCTGGCTCTTTT 59.231 45.455 13.56 0.00 37.80 2.27
1212 2723 3.960755 TCTGATCCGATCTGGCTCTTTTA 59.039 43.478 13.56 0.00 37.80 1.52
1213 2724 4.405680 TCTGATCCGATCTGGCTCTTTTAA 59.594 41.667 13.56 0.00 37.80 1.52
1214 2725 5.070981 TCTGATCCGATCTGGCTCTTTTAAT 59.929 40.000 13.56 0.00 37.80 1.40
1281 2792 0.864797 GATCGGCGTCAAGGTACGTC 60.865 60.000 6.85 0.00 44.64 4.34
1304 2823 3.768922 GGCTCTCGGCTCTGCTGT 61.769 66.667 0.00 0.00 41.46 4.40
1316 2835 2.823984 CTCTGCTGTCATCAGTGGATC 58.176 52.381 3.71 0.00 43.05 3.36
1318 2837 1.485480 CTGCTGTCATCAGTGGATCCT 59.515 52.381 14.23 0.00 43.05 3.24
1319 2838 1.911357 TGCTGTCATCAGTGGATCCTT 59.089 47.619 14.23 0.00 43.05 3.36
1324 2843 2.121948 TCATCAGTGGATCCTTCCTGG 58.878 52.381 14.23 5.22 43.07 4.45
1325 2844 0.842635 ATCAGTGGATCCTTCCTGGC 59.157 55.000 14.23 0.00 43.07 4.85
1326 2845 0.252881 TCAGTGGATCCTTCCTGGCT 60.253 55.000 14.23 0.00 43.07 4.75
1439 2958 1.667154 TTCGTCGGATCTGAGGCCTG 61.667 60.000 12.00 0.00 0.00 4.85
1443 2962 0.755698 TCGGATCTGAGGCCTGGTAC 60.756 60.000 12.00 0.00 0.00 3.34
1493 3012 5.308825 GTCGGATAACATTCTGGATGGATT 58.691 41.667 0.20 0.00 40.21 3.01
1507 3026 8.192743 TCTGGATGGATTGAATTTTCAGAAAA 57.807 30.769 10.80 10.80 38.61 2.29
1518 3037 9.573133 TTGAATTTTCAGAAAAGAACTGTCTTC 57.427 29.630 13.71 9.94 39.70 2.87
1552 3071 4.748102 TGTTCACACAACTCGAGGTTTATC 59.252 41.667 18.41 0.00 35.74 1.75
1553 3072 3.921677 TCACACAACTCGAGGTTTATCC 58.078 45.455 18.41 0.00 35.74 2.59
1600 3120 9.802039 ATCACCATTTTGTTTAGTTTAGTAGGA 57.198 29.630 0.00 0.00 0.00 2.94
1601 3121 9.280174 TCACCATTTTGTTTAGTTTAGTAGGAG 57.720 33.333 0.00 0.00 0.00 3.69
1602 3122 9.063615 CACCATTTTGTTTAGTTTAGTAGGAGT 57.936 33.333 0.00 0.00 0.00 3.85
1614 3134 8.977267 AGTTTAGTAGGAGTAGTACATACCAG 57.023 38.462 2.52 0.00 34.67 4.00
1651 3171 4.999950 CCTATGACCTAAATCCATCAGTGC 59.000 45.833 0.00 0.00 0.00 4.40
1656 3176 3.118112 ACCTAAATCCATCAGTGCAGAGG 60.118 47.826 0.00 0.00 0.00 3.69
1695 3215 8.011673 GCTTTTCTTTCAAAAACTGAATATGCC 58.988 33.333 0.00 0.00 43.64 4.40
1701 3221 4.082081 TCAAAAACTGAATATGCCAGCAGG 60.082 41.667 0.00 0.00 35.14 4.85
1772 3295 2.463752 AGCATCATCCACAATTTGGCT 58.536 42.857 0.78 0.00 46.47 4.75
1776 3299 3.940209 TCATCCACAATTTGGCTCAAC 57.060 42.857 0.78 0.00 46.47 3.18
1788 3311 7.039504 ACAATTTGGCTCAACATACTGATCTTT 60.040 33.333 0.78 0.00 0.00 2.52
1790 3313 6.899393 TTGGCTCAACATACTGATCTTTTT 57.101 33.333 0.00 0.00 0.00 1.94
1819 3342 3.529634 CGAAGCCGTGTTGTGAAAATA 57.470 42.857 0.00 0.00 0.00 1.40
1820 3343 3.479006 CGAAGCCGTGTTGTGAAAATAG 58.521 45.455 0.00 0.00 0.00 1.73
1821 3344 2.989422 AGCCGTGTTGTGAAAATAGC 57.011 45.000 0.00 0.00 0.00 2.97
1901 3424 9.860898 AGATGGTTCAAAGAAAATAATTGCTAC 57.139 29.630 0.00 0.00 0.00 3.58
1902 3425 9.860898 GATGGTTCAAAGAAAATAATTGCTACT 57.139 29.630 0.00 0.00 0.00 2.57
1903 3426 9.860898 ATGGTTCAAAGAAAATAATTGCTACTC 57.139 29.630 0.00 0.00 0.00 2.59
1904 3427 8.303876 TGGTTCAAAGAAAATAATTGCTACTCC 58.696 33.333 0.00 0.00 0.00 3.85
1905 3428 7.759886 GGTTCAAAGAAAATAATTGCTACTCCC 59.240 37.037 0.00 0.00 0.00 4.30
1906 3429 8.523658 GTTCAAAGAAAATAATTGCTACTCCCT 58.476 33.333 0.00 0.00 0.00 4.20
1907 3430 8.281212 TCAAAGAAAATAATTGCTACTCCCTC 57.719 34.615 0.00 0.00 0.00 4.30
1908 3431 7.888021 TCAAAGAAAATAATTGCTACTCCCTCA 59.112 33.333 0.00 0.00 0.00 3.86
1909 3432 7.872113 AAGAAAATAATTGCTACTCCCTCAG 57.128 36.000 0.00 0.00 0.00 3.35
1910 3433 6.963322 AGAAAATAATTGCTACTCCCTCAGT 58.037 36.000 0.00 0.00 39.41 3.41
1911 3434 7.051000 AGAAAATAATTGCTACTCCCTCAGTC 58.949 38.462 0.00 0.00 36.43 3.51
1912 3435 4.965200 ATAATTGCTACTCCCTCAGTCC 57.035 45.455 0.00 0.00 36.43 3.85
1913 3436 1.501582 ATTGCTACTCCCTCAGTCCC 58.498 55.000 0.00 0.00 36.43 4.46
1914 3437 0.116342 TTGCTACTCCCTCAGTCCCA 59.884 55.000 0.00 0.00 36.43 4.37
1915 3438 0.116342 TGCTACTCCCTCAGTCCCAA 59.884 55.000 0.00 0.00 36.43 4.12
1916 3439 1.276622 GCTACTCCCTCAGTCCCAAA 58.723 55.000 0.00 0.00 36.43 3.28
1917 3440 1.628846 GCTACTCCCTCAGTCCCAAAA 59.371 52.381 0.00 0.00 36.43 2.44
1918 3441 2.239907 GCTACTCCCTCAGTCCCAAAAT 59.760 50.000 0.00 0.00 36.43 1.82
1919 3442 3.454812 GCTACTCCCTCAGTCCCAAAATA 59.545 47.826 0.00 0.00 36.43 1.40
1920 3443 4.080526 GCTACTCCCTCAGTCCCAAAATAA 60.081 45.833 0.00 0.00 36.43 1.40
1921 3444 5.572885 GCTACTCCCTCAGTCCCAAAATAAA 60.573 44.000 0.00 0.00 36.43 1.40
1922 3445 4.663334 ACTCCCTCAGTCCCAAAATAAAC 58.337 43.478 0.00 0.00 0.00 2.01
1923 3446 3.681593 TCCCTCAGTCCCAAAATAAACG 58.318 45.455 0.00 0.00 0.00 3.60
1924 3447 3.328343 TCCCTCAGTCCCAAAATAAACGA 59.672 43.478 0.00 0.00 0.00 3.85
1925 3448 3.439129 CCCTCAGTCCCAAAATAAACGAC 59.561 47.826 0.00 0.00 0.00 4.34
1926 3449 3.124636 CCTCAGTCCCAAAATAAACGACG 59.875 47.826 0.00 0.00 0.00 5.12
1927 3450 2.481185 TCAGTCCCAAAATAAACGACGC 59.519 45.455 0.00 0.00 0.00 5.19
1928 3451 2.482721 CAGTCCCAAAATAAACGACGCT 59.517 45.455 0.00 0.00 0.00 5.07
1929 3452 3.058501 CAGTCCCAAAATAAACGACGCTT 60.059 43.478 0.00 0.00 0.00 4.68
1930 3453 4.152759 CAGTCCCAAAATAAACGACGCTTA 59.847 41.667 0.00 0.00 0.00 3.09
1931 3454 4.152938 AGTCCCAAAATAAACGACGCTTAC 59.847 41.667 0.00 0.00 0.00 2.34
1932 3455 4.152938 GTCCCAAAATAAACGACGCTTACT 59.847 41.667 0.00 0.00 0.00 2.24
1933 3456 4.756135 TCCCAAAATAAACGACGCTTACTT 59.244 37.500 0.00 0.00 0.00 2.24
1934 3457 5.239087 TCCCAAAATAAACGACGCTTACTTT 59.761 36.000 0.00 0.00 0.00 2.66
1935 3458 5.341196 CCCAAAATAAACGACGCTTACTTTG 59.659 40.000 14.64 14.64 29.57 2.77
1936 3459 5.341196 CCAAAATAAACGACGCTTACTTTGG 59.659 40.000 22.12 22.12 38.52 3.28
1937 3460 4.673534 AATAAACGACGCTTACTTTGGG 57.326 40.909 0.00 0.00 0.00 4.12
1938 3461 2.243602 AAACGACGCTTACTTTGGGA 57.756 45.000 0.00 0.00 0.00 4.37
1939 3462 1.505425 AACGACGCTTACTTTGGGAC 58.495 50.000 0.00 0.00 0.00 4.46
1940 3463 0.665369 ACGACGCTTACTTTGGGACG 60.665 55.000 0.00 0.00 40.01 4.79
1941 3464 1.349259 CGACGCTTACTTTGGGACGG 61.349 60.000 0.00 0.00 33.75 4.79
1942 3465 0.037975 GACGCTTACTTTGGGACGGA 60.038 55.000 0.00 0.00 0.00 4.69
1943 3466 0.037605 ACGCTTACTTTGGGACGGAG 60.038 55.000 0.00 0.00 0.00 4.63
1944 3467 0.739813 CGCTTACTTTGGGACGGAGG 60.740 60.000 0.00 0.00 0.00 4.30
1945 3468 0.392595 GCTTACTTTGGGACGGAGGG 60.393 60.000 0.00 0.00 0.00 4.30
1946 3469 1.272807 CTTACTTTGGGACGGAGGGA 58.727 55.000 0.00 0.00 0.00 4.20
1947 3470 1.207329 CTTACTTTGGGACGGAGGGAG 59.793 57.143 0.00 0.00 0.00 4.30
1948 3471 0.115745 TACTTTGGGACGGAGGGAGT 59.884 55.000 0.00 0.00 0.00 3.85
1949 3472 0.115745 ACTTTGGGACGGAGGGAGTA 59.884 55.000 0.00 0.00 0.00 2.59
1950 3473 1.273666 ACTTTGGGACGGAGGGAGTAT 60.274 52.381 0.00 0.00 0.00 2.12
1951 3474 1.139058 CTTTGGGACGGAGGGAGTATG 59.861 57.143 0.00 0.00 0.00 2.39
1966 3489 4.025979 GGGAGTATGCTAATGAAACGAACG 60.026 45.833 0.00 0.00 0.00 3.95
1992 3515 8.157476 GGTAGTTACATGGATACTGGATTTCAT 58.843 37.037 0.00 0.00 37.61 2.57
2004 3527 2.490509 TGGATTTCATGCTGAACTGCAG 59.509 45.455 13.48 13.48 46.71 4.41
2019 3542 7.295322 TGAACTGCAGTAGAGCATAGATAAT 57.705 36.000 22.01 0.00 44.68 1.28
2023 3546 8.375608 ACTGCAGTAGAGCATAGATAATTTTG 57.624 34.615 20.16 0.00 44.68 2.44
2027 3550 7.118971 GCAGTAGAGCATAGATAATTTTGGAGG 59.881 40.741 0.00 0.00 0.00 4.30
2031 3554 8.457238 AGAGCATAGATAATTTTGGAGGAAAC 57.543 34.615 0.00 0.00 0.00 2.78
2090 3614 7.012704 AGCAATAGAGCATAGTTTAACACCATG 59.987 37.037 0.00 0.00 36.85 3.66
2108 3632 3.488721 CCATGTGCTAGCTTCATTTCTGC 60.489 47.826 17.23 0.00 0.00 4.26
2153 3677 8.532186 TTATCTTGTTATTATGCCCATGTTGT 57.468 30.769 0.00 0.00 0.00 3.32
2177 3701 5.904362 ATTTTCAGTACAAGCCAGAATCC 57.096 39.130 0.00 0.00 0.00 3.01
2247 3771 6.128282 CCGTGTAAGTTCAATATTCTGCTGTT 60.128 38.462 0.00 0.00 0.00 3.16
2254 3778 7.168219 AGTTCAATATTCTGCTGTTTGACCTA 58.832 34.615 0.00 0.00 0.00 3.08
2255 3779 7.831193 AGTTCAATATTCTGCTGTTTGACCTAT 59.169 33.333 0.00 0.00 0.00 2.57
2264 3788 6.048732 TGCTGTTTGACCTATATCTGTTGA 57.951 37.500 0.00 0.00 0.00 3.18
2314 3838 5.125097 GCAATTTGTCATGGAGAGTTCTGAT 59.875 40.000 0.00 0.00 0.00 2.90
2320 3844 5.246883 TGTCATGGAGAGTTCTGATTTGAGA 59.753 40.000 0.00 0.00 0.00 3.27
2325 3849 7.013823 TGGAGAGTTCTGATTTGAGATTCTT 57.986 36.000 0.00 0.00 0.00 2.52
2326 3850 7.102346 TGGAGAGTTCTGATTTGAGATTCTTC 58.898 38.462 0.00 0.00 0.00 2.87
2337 3861 9.300681 TGATTTGAGATTCTTCTTTATTGTGGT 57.699 29.630 0.00 0.00 30.30 4.16
2351 3875 8.726988 TCTTTATTGTGGTATTTACAGAACTGC 58.273 33.333 1.46 0.00 0.00 4.40
2366 3891 4.153835 CAGAACTGCATTGTCCTCTTTCTC 59.846 45.833 0.00 0.00 0.00 2.87
2370 3895 2.639347 TGCATTGTCCTCTTTCTCTCCA 59.361 45.455 0.00 0.00 0.00 3.86
2405 3931 8.251721 CACTCAACTAGTATGCCTTAACTTACT 58.748 37.037 0.00 0.00 35.76 2.24
2410 3936 8.376803 ACTAGTATGCCTTAACTTACTCCTTT 57.623 34.615 0.00 0.00 33.81 3.11
2411 3937 8.258708 ACTAGTATGCCTTAACTTACTCCTTTG 58.741 37.037 0.00 0.00 33.81 2.77
2415 3941 4.753107 TGCCTTAACTTACTCCTTTGTTCG 59.247 41.667 0.00 0.00 0.00 3.95
2432 3958 7.971722 CCTTTGTTCGGTAAAAGAAGAAAAGAA 59.028 33.333 12.07 0.00 39.33 2.52
2492 4018 7.851228 TCTACTGCAATATGTAGATATTGGGG 58.149 38.462 25.69 8.69 46.43 4.96
2493 4019 5.819991 ACTGCAATATGTAGATATTGGGGG 58.180 41.667 25.69 8.40 46.43 5.40
2501 4027 3.721575 TGTAGATATTGGGGGACTGCAAT 59.278 43.478 0.00 0.00 0.00 3.56
2515 4041 5.877012 GGGACTGCAATATGTATGATACTGG 59.123 44.000 4.03 0.00 0.00 4.00
2516 4042 5.877012 GGACTGCAATATGTATGATACTGGG 59.123 44.000 4.03 0.00 0.00 4.45
2517 4043 6.439636 ACTGCAATATGTATGATACTGGGT 57.560 37.500 4.03 0.00 0.00 4.51
2518 4044 6.233434 ACTGCAATATGTATGATACTGGGTG 58.767 40.000 4.03 0.00 0.00 4.61
2522 4048 7.228507 TGCAATATGTATGATACTGGGTGAAAC 59.771 37.037 4.03 0.00 0.00 2.78
2525 4051 4.513442 TGTATGATACTGGGTGAAACTGC 58.487 43.478 4.03 0.00 36.74 4.40
2536 4062 3.305064 GGGTGAAACTGCGAATTTGCTTA 60.305 43.478 18.44 0.00 36.74 3.09
2537 4063 4.485163 GGTGAAACTGCGAATTTGCTTAT 58.515 39.130 18.44 2.76 36.74 1.73
2625 4151 8.285891 TGTTAATTCAACCATCCCATATAGGTT 58.714 33.333 0.00 0.00 44.74 3.50
2638 4164 8.865244 TCCCATATAGGTTTACTTAAAGAGGT 57.135 34.615 0.00 0.00 34.66 3.85
2816 4343 2.459555 AAGGGCCCATTGGATAACTG 57.540 50.000 27.56 0.00 0.00 3.16
2817 4344 0.557729 AGGGCCCATTGGATAACTGG 59.442 55.000 27.56 0.00 0.00 4.00
2832 4359 7.110155 TGGATAACTGGGTAGTTTCTTCATTC 58.890 38.462 0.00 0.00 44.57 2.67
2846 4373 7.922811 AGTTTCTTCATTCACAATTTGGTTCTC 59.077 33.333 0.78 0.00 0.00 2.87
2849 4376 5.125100 TCATTCACAATTTGGTTCTCTGC 57.875 39.130 0.78 0.00 0.00 4.26
2883 4410 2.293856 ACTTCACCCTGTAGGATGGGAT 60.294 50.000 4.93 0.00 46.15 3.85
3004 4531 6.776603 AGGTATACCATTTTACGCTCTCTAGT 59.223 38.462 23.87 0.00 38.89 2.57
3010 4537 8.059798 ACCATTTTACGCTCTCTAGTTAGTAA 57.940 34.615 0.00 0.00 0.00 2.24
3014 4541 4.886247 ACGCTCTCTAGTTAGTAAGCAG 57.114 45.455 12.50 9.13 34.17 4.24
3131 4658 3.058450 CGAGCCATCTAGCAAATCAGAG 58.942 50.000 0.00 0.00 34.23 3.35
3276 4803 2.996631 ACCATGATCAAACAGAGGAGC 58.003 47.619 0.00 0.00 0.00 4.70
3318 4846 7.923414 ATAGATCAAGTGACTTTTGTTACCC 57.077 36.000 0.00 0.00 39.43 3.69
3404 4932 8.849543 ATGGTTATAAAGTACTACTCCCTTCA 57.150 34.615 0.00 0.00 0.00 3.02
3417 4945 8.794335 ACTACTCCCTTCATTTCTCATTTTAC 57.206 34.615 0.00 0.00 0.00 2.01
3418 4946 8.606830 ACTACTCCCTTCATTTCTCATTTTACT 58.393 33.333 0.00 0.00 0.00 2.24
3419 4947 9.454859 CTACTCCCTTCATTTCTCATTTTACTT 57.545 33.333 0.00 0.00 0.00 2.24
3420 4948 8.712228 ACTCCCTTCATTTCTCATTTTACTTT 57.288 30.769 0.00 0.00 0.00 2.66
3421 4949 8.579863 ACTCCCTTCATTTCTCATTTTACTTTG 58.420 33.333 0.00 0.00 0.00 2.77
3555 5099 4.505808 TCCATTTGGTATTTGCAATGCTG 58.494 39.130 6.82 0.00 36.34 4.41
3562 5106 6.975196 TGGTATTTGCAATGCTGGTATTAT 57.025 33.333 6.82 0.00 0.00 1.28
3596 5147 7.776107 TGTTCAAACATCAACAAATGGACTTA 58.224 30.769 0.00 0.00 33.17 2.24
3613 5164 6.412214 TGGACTTAAGACAAACCTAATAGGC 58.588 40.000 10.09 0.00 39.63 3.93
3614 5165 6.013206 TGGACTTAAGACAAACCTAATAGGCA 60.013 38.462 10.09 0.00 39.63 4.75
3622 5173 7.862675 AGACAAACCTAATAGGCAGAGTAAAT 58.137 34.615 6.17 0.00 39.63 1.40
3629 5180 8.598041 ACCTAATAGGCAGAGTAAATAGGAATG 58.402 37.037 6.17 0.00 39.63 2.67
3633 5184 4.349342 AGGCAGAGTAAATAGGAATGGAGG 59.651 45.833 0.00 0.00 0.00 4.30
3634 5185 4.505742 GGCAGAGTAAATAGGAATGGAGGG 60.506 50.000 0.00 0.00 0.00 4.30
3635 5186 4.348168 GCAGAGTAAATAGGAATGGAGGGA 59.652 45.833 0.00 0.00 0.00 4.20
3636 5187 5.013599 GCAGAGTAAATAGGAATGGAGGGAT 59.986 44.000 0.00 0.00 0.00 3.85
3697 5248 2.416202 CAGCATGCATGTAACGAGTCAA 59.584 45.455 26.79 0.00 0.00 3.18
3698 5249 2.674852 AGCATGCATGTAACGAGTCAAG 59.325 45.455 26.79 0.00 0.00 3.02
3700 5251 3.242220 GCATGCATGTAACGAGTCAAGAG 60.242 47.826 26.79 0.00 0.00 2.85
3701 5252 3.934457 TGCATGTAACGAGTCAAGAGA 57.066 42.857 0.00 0.00 0.00 3.10
3702 5253 4.251543 TGCATGTAACGAGTCAAGAGAA 57.748 40.909 0.00 0.00 0.00 2.87
3703 5254 4.627058 TGCATGTAACGAGTCAAGAGAAA 58.373 39.130 0.00 0.00 0.00 2.52
3705 5256 5.700832 TGCATGTAACGAGTCAAGAGAAATT 59.299 36.000 0.00 0.00 0.00 1.82
3706 5257 6.204688 TGCATGTAACGAGTCAAGAGAAATTT 59.795 34.615 0.00 0.00 0.00 1.82
3707 5258 6.738649 GCATGTAACGAGTCAAGAGAAATTTC 59.261 38.462 10.33 10.33 0.00 2.17
3708 5259 7.571244 GCATGTAACGAGTCAAGAGAAATTTCA 60.571 37.037 19.99 0.00 0.00 2.69
3709 5260 7.408132 TGTAACGAGTCAAGAGAAATTTCAG 57.592 36.000 19.99 7.19 0.00 3.02
3710 5261 6.984474 TGTAACGAGTCAAGAGAAATTTCAGT 59.016 34.615 19.99 3.83 0.00 3.41
3711 5262 6.927294 AACGAGTCAAGAGAAATTTCAGTT 57.073 33.333 19.99 9.68 0.00 3.16
3737 5288 8.610248 TTTTAAACCGTCTCAGATTACATTCA 57.390 30.769 0.00 0.00 0.00 2.57
3739 5290 5.407407 AACCGTCTCAGATTACATTCACT 57.593 39.130 0.00 0.00 0.00 3.41
3750 5301 8.147704 TCAGATTACATTCACTTGTGTACTTGA 58.852 33.333 0.46 0.00 31.05 3.02
3753 5304 9.599322 GATTACATTCACTTGTGTACTTGAAAG 57.401 33.333 0.46 0.00 31.96 2.62
3758 5309 5.123227 TCACTTGTGTACTTGAAAGGAAGG 58.877 41.667 0.46 0.00 0.00 3.46
3760 5311 5.588648 CACTTGTGTACTTGAAAGGAAGGAA 59.411 40.000 0.00 0.00 0.00 3.36
3770 5321 1.542187 AAGGAAGGAAGACGGACCCG 61.542 60.000 6.94 6.94 46.03 5.28
3771 5322 1.980772 GGAAGGAAGACGGACCCGA 60.981 63.158 16.07 0.00 42.83 5.14
3773 5324 2.223200 GAAGGAAGACGGACCCGACC 62.223 65.000 16.07 11.82 42.83 4.79
3796 5347 0.179059 TCTTTCTGCCAACGTGCTGA 60.179 50.000 3.75 3.75 37.42 4.26
3798 5349 1.165907 TTTCTGCCAACGTGCTGAGG 61.166 55.000 7.36 0.00 39.81 3.86
3811 5362 3.189080 CGTGCTGAGGTTTCATCAATCAA 59.811 43.478 0.00 0.00 31.79 2.57
3813 5364 3.189080 TGCTGAGGTTTCATCAATCAACG 59.811 43.478 0.00 0.00 31.68 4.10
3831 5396 1.375523 GTGCCGGTGGTGAGTTAGG 60.376 63.158 1.90 0.00 0.00 2.69
3883 5448 1.826720 GGATCCAATTTTGCTGCCAGA 59.173 47.619 6.95 0.00 0.00 3.86
3886 5451 4.282703 GGATCCAATTTTGCTGCCAGATAT 59.717 41.667 6.95 0.00 0.00 1.63
3889 5454 5.693961 TCCAATTTTGCTGCCAGATATCTA 58.306 37.500 4.54 0.00 0.00 1.98
3890 5455 6.128486 TCCAATTTTGCTGCCAGATATCTAA 58.872 36.000 4.54 0.00 0.00 2.10
3891 5456 6.779049 TCCAATTTTGCTGCCAGATATCTAAT 59.221 34.615 4.54 0.00 0.00 1.73
3892 5457 7.288389 TCCAATTTTGCTGCCAGATATCTAATT 59.712 33.333 4.54 2.75 0.00 1.40
3893 5458 7.929785 CCAATTTTGCTGCCAGATATCTAATTT 59.070 33.333 4.54 0.00 0.00 1.82
3894 5459 9.321562 CAATTTTGCTGCCAGATATCTAATTTT 57.678 29.630 4.54 0.00 0.00 1.82
3895 5460 8.882415 ATTTTGCTGCCAGATATCTAATTTTG 57.118 30.769 4.54 0.00 0.00 2.44
3896 5461 5.443185 TGCTGCCAGATATCTAATTTTGC 57.557 39.130 4.54 6.33 0.00 3.68
3897 5462 5.135383 TGCTGCCAGATATCTAATTTTGCT 58.865 37.500 4.54 0.00 0.00 3.91
3898 5463 5.009310 TGCTGCCAGATATCTAATTTTGCTG 59.991 40.000 4.54 6.90 0.00 4.41
3899 5464 5.443185 TGCCAGATATCTAATTTTGCTGC 57.557 39.130 4.54 0.00 0.00 5.25
3900 5465 4.279169 TGCCAGATATCTAATTTTGCTGCC 59.721 41.667 4.54 0.00 0.00 4.85
3901 5466 4.279169 GCCAGATATCTAATTTTGCTGCCA 59.721 41.667 4.54 0.00 0.00 4.92
3902 5467 5.564259 GCCAGATATCTAATTTTGCTGCCAG 60.564 44.000 4.54 0.00 0.00 4.85
3903 5468 5.766670 CCAGATATCTAATTTTGCTGCCAGA 59.233 40.000 4.54 0.00 0.00 3.86
3904 5469 6.433404 CCAGATATCTAATTTTGCTGCCAGAT 59.567 38.462 4.54 0.00 0.00 2.90
3905 5470 7.609146 CCAGATATCTAATTTTGCTGCCAGATA 59.391 37.037 4.54 1.15 31.55 1.98
3906 5471 9.175312 CAGATATCTAATTTTGCTGCCAGATAT 57.825 33.333 4.54 5.63 38.04 1.63
3907 5472 9.393512 AGATATCTAATTTTGCTGCCAGATATC 57.606 33.333 16.21 16.21 44.94 1.63
3908 5473 9.393512 GATATCTAATTTTGCTGCCAGATATCT 57.606 33.333 16.47 0.00 43.14 1.98
3909 5474 6.872628 TCTAATTTTGCTGCCAGATATCTG 57.127 37.500 23.53 23.53 43.40 2.90
3910 5475 4.317671 AATTTTGCTGCCAGATATCTGC 57.682 40.909 24.81 19.79 42.47 4.26
3911 5476 2.423446 TTTGCTGCCAGATATCTGCA 57.577 45.000 24.81 22.62 42.47 4.41
3932 5497 3.976793 TTGTACCCTCATCGATACGAC 57.023 47.619 0.00 0.00 39.18 4.34
3935 5500 0.942962 ACCCTCATCGATACGACGAC 59.057 55.000 0.00 0.00 44.84 4.34
3943 5508 0.383983 CGATACGACGACTTAGGCCG 60.384 60.000 0.00 0.00 35.09 6.13
3948 5513 1.445582 GACGACTTAGGCCGTGTGG 60.446 63.158 6.66 1.52 39.30 4.17
3955 5520 3.533079 TAGGCCGTGTGGGAGGACA 62.533 63.158 0.00 0.00 38.23 4.02
3957 5522 2.125106 GCCGTGTGGGAGGACATC 60.125 66.667 0.00 0.00 38.47 3.06
3988 5553 5.116084 TCACTATTTCCCTCCAAATCTGG 57.884 43.478 0.00 0.00 45.08 3.86
4210 5786 3.245052 ACCCAACTCATCTTCCTTTCCTG 60.245 47.826 0.00 0.00 0.00 3.86
4218 5794 0.035439 CTTCCTTTCCTGGCGCCTAA 60.035 55.000 29.70 16.38 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 2.672961 TCCAGTCCTCACGCAAATAG 57.327 50.000 0.00 0.00 0.00 1.73
136 137 2.158957 ACAGTAGTTCGGGTGGCATATG 60.159 50.000 0.00 0.00 0.00 1.78
137 138 2.102588 GACAGTAGTTCGGGTGGCATAT 59.897 50.000 0.00 0.00 0.00 1.78
144 146 3.314541 GAACATGACAGTAGTTCGGGT 57.685 47.619 0.00 0.00 33.24 5.28
178 180 7.118496 AGATACCAGACCATCTTAACTTGAG 57.882 40.000 0.00 0.00 0.00 3.02
212 214 1.290203 ACAGCGACATATTTCGGCAG 58.710 50.000 12.84 5.31 39.50 4.85
263 265 2.829720 ACTACAAAGTCAGGTGGCGATA 59.170 45.455 0.00 0.00 0.00 2.92
271 273 6.154445 ACAACATACGTACTACAAAGTCAGG 58.846 40.000 0.00 0.00 37.15 3.86
282 284 5.204409 TGAGACCAAACAACATACGTACT 57.796 39.130 0.00 0.00 0.00 2.73
387 389 3.627123 CACGATGCTCAAATATGTTGGGA 59.373 43.478 0.00 0.00 0.00 4.37
472 474 8.736244 GGAATGGAGTAAATAAAGTAGCAACAA 58.264 33.333 0.00 0.00 0.00 2.83
494 496 2.226330 TGCCGCGCTATATTTTGGAAT 58.774 42.857 5.56 0.00 0.00 3.01
496 498 1.225855 CTGCCGCGCTATATTTTGGA 58.774 50.000 5.56 0.00 0.00 3.53
510 516 4.107051 CCTTGGAAAGCGCTGCCG 62.107 66.667 12.58 4.06 44.44 5.69
512 518 1.081175 GAACCTTGGAAAGCGCTGC 60.081 57.895 12.58 6.29 44.44 5.25
513 519 0.667993 TTGAACCTTGGAAAGCGCTG 59.332 50.000 12.58 0.00 44.44 5.18
514 520 0.668535 GTTGAACCTTGGAAAGCGCT 59.331 50.000 2.64 2.64 44.44 5.92
518 524 4.159506 TGGTCAAAGTTGAACCTTGGAAAG 59.840 41.667 6.80 0.00 44.20 2.62
521 527 3.374042 TGGTCAAAGTTGAACCTTGGA 57.626 42.857 6.80 0.00 44.20 3.53
522 528 5.782893 TTATGGTCAAAGTTGAACCTTGG 57.217 39.130 6.80 0.00 44.20 3.61
524 530 8.017418 TGAATTTATGGTCAAAGTTGAACCTT 57.983 30.769 6.62 6.50 44.20 3.50
548 1744 0.716108 GCAGTCGATCTCGTTGGTTG 59.284 55.000 0.00 0.00 40.80 3.77
560 1756 4.656117 TGCTTTCGCCGCAGTCGA 62.656 61.111 0.00 0.00 34.66 4.20
564 1760 1.139163 AATTTTTGCTTTCGCCGCAG 58.861 45.000 0.00 0.00 38.80 5.18
570 1766 6.840789 GTGCTTCAACTTAATTTTTGCTTTCG 59.159 34.615 0.00 0.00 0.00 3.46
572 1768 6.533367 TCGTGCTTCAACTTAATTTTTGCTTT 59.467 30.769 0.00 0.00 0.00 3.51
573 1769 6.039616 TCGTGCTTCAACTTAATTTTTGCTT 58.960 32.000 0.00 0.00 0.00 3.91
583 1779 4.272504 CCTCTGTTTTCGTGCTTCAACTTA 59.727 41.667 0.00 0.00 0.00 2.24
585 1781 2.614057 CCTCTGTTTTCGTGCTTCAACT 59.386 45.455 0.00 0.00 0.00 3.16
586 1782 2.612212 TCCTCTGTTTTCGTGCTTCAAC 59.388 45.455 0.00 0.00 0.00 3.18
587 1783 2.912771 TCCTCTGTTTTCGTGCTTCAA 58.087 42.857 0.00 0.00 0.00 2.69
588 1784 2.613026 TCCTCTGTTTTCGTGCTTCA 57.387 45.000 0.00 0.00 0.00 3.02
601 1878 8.335532 TGTTCCAAAATATAGTGTTTCCTCTG 57.664 34.615 0.00 0.00 0.00 3.35
602 1879 8.383175 TCTGTTCCAAAATATAGTGTTTCCTCT 58.617 33.333 0.00 0.00 0.00 3.69
603 1880 8.561738 TCTGTTCCAAAATATAGTGTTTCCTC 57.438 34.615 0.00 0.00 0.00 3.71
605 1882 7.148069 CCCTCTGTTCCAAAATATAGTGTTTCC 60.148 40.741 0.00 0.00 0.00 3.13
609 1886 6.215636 ACTCCCTCTGTTCCAAAATATAGTGT 59.784 38.462 0.00 0.00 0.00 3.55
660 1937 2.588314 CCAGCCTCTGCATCGAGC 60.588 66.667 0.00 0.00 45.96 5.03
667 1944 0.037447 GGATTATCCCCAGCCTCTGC 59.963 60.000 0.00 0.00 37.95 4.26
811 2298 3.952967 TGGCTAGCATGCAATTGATGTTA 59.047 39.130 21.98 10.90 34.04 2.41
955 2461 2.758423 TGCGTTTATAGAGGAGCAGTGA 59.242 45.455 0.00 0.00 0.00 3.41
1000 2506 0.327287 TCGGGTAGAGAGGAGGAGGA 60.327 60.000 0.00 0.00 0.00 3.71
1001 2507 0.551879 TTCGGGTAGAGAGGAGGAGG 59.448 60.000 0.00 0.00 0.00 4.30
1002 2508 1.064611 TGTTCGGGTAGAGAGGAGGAG 60.065 57.143 0.00 0.00 0.00 3.69
1208 2719 2.831526 GGAGGCTGCAGGGAAATTAAAA 59.168 45.455 17.12 0.00 0.00 1.52
1209 2720 2.456577 GGAGGCTGCAGGGAAATTAAA 58.543 47.619 17.12 0.00 0.00 1.52
1210 2721 1.681780 CGGAGGCTGCAGGGAAATTAA 60.682 52.381 17.12 0.00 0.00 1.40
1211 2722 0.107214 CGGAGGCTGCAGGGAAATTA 60.107 55.000 17.12 0.00 0.00 1.40
1212 2723 1.379044 CGGAGGCTGCAGGGAAATT 60.379 57.895 17.12 0.00 0.00 1.82
1213 2724 2.273449 CGGAGGCTGCAGGGAAAT 59.727 61.111 17.12 0.00 0.00 2.17
1214 2725 4.722700 GCGGAGGCTGCAGGGAAA 62.723 66.667 17.12 0.00 35.55 3.13
1232 2743 1.800713 GACGTCGCCGGACTTCTTC 60.801 63.158 5.05 0.00 41.16 2.87
1301 2820 3.191078 GGAAGGATCCACTGATGACAG 57.809 52.381 15.82 0.00 45.79 3.51
1316 2835 2.032528 TGAACGCAGCCAGGAAGG 59.967 61.111 0.00 0.00 41.84 3.46
1318 2837 0.036732 ATTCTGAACGCAGCCAGGAA 59.963 50.000 0.00 0.00 42.01 3.36
1319 2838 0.036732 AATTCTGAACGCAGCCAGGA 59.963 50.000 0.00 0.00 42.01 3.86
1324 2843 1.002468 ACACACAATTCTGAACGCAGC 60.002 47.619 0.00 0.00 42.01 5.25
1325 2844 3.338818 AACACACAATTCTGAACGCAG 57.661 42.857 0.00 0.00 43.67 5.18
1326 2845 3.773860 AAACACACAATTCTGAACGCA 57.226 38.095 0.00 0.00 0.00 5.24
1439 2958 0.714994 TAACACAATTCGCGCGTACC 59.285 50.000 30.98 0.00 0.00 3.34
1443 2962 0.713883 ACTCTAACACAATTCGCGCG 59.286 50.000 26.76 26.76 0.00 6.86
1493 3012 7.910162 CGAAGACAGTTCTTTTCTGAAAATTCA 59.090 33.333 15.30 1.40 42.53 2.57
1507 3026 1.341531 CAGTCCCACGAAGACAGTTCT 59.658 52.381 0.00 0.00 36.68 3.01
1518 3037 1.148310 GTGTGAACATCAGTCCCACG 58.852 55.000 0.00 0.00 35.36 4.94
1552 3071 0.036010 ATCACCTCCAAAGCGACAGG 60.036 55.000 0.00 0.00 0.00 4.00
1553 3072 2.166459 TCTATCACCTCCAAAGCGACAG 59.834 50.000 0.00 0.00 0.00 3.51
1557 3076 3.459232 TGATCTATCACCTCCAAAGCG 57.541 47.619 0.00 0.00 0.00 4.68
1599 3119 5.732810 GCGAAACCTCTGGTATGTACTACTC 60.733 48.000 0.00 0.00 33.12 2.59
1600 3120 4.097589 GCGAAACCTCTGGTATGTACTACT 59.902 45.833 0.00 0.00 33.12 2.57
1601 3121 4.142315 TGCGAAACCTCTGGTATGTACTAC 60.142 45.833 0.00 0.00 33.12 2.73
1602 3122 4.018490 TGCGAAACCTCTGGTATGTACTA 58.982 43.478 0.00 0.00 33.12 1.82
1603 3123 2.829720 TGCGAAACCTCTGGTATGTACT 59.170 45.455 0.00 0.00 33.12 2.73
1604 3124 2.928116 GTGCGAAACCTCTGGTATGTAC 59.072 50.000 0.00 0.00 33.12 2.90
1605 3125 2.563620 TGTGCGAAACCTCTGGTATGTA 59.436 45.455 0.00 0.00 33.12 2.29
1611 3131 1.949257 GGTTGTGCGAAACCTCTGG 59.051 57.895 12.01 0.00 45.25 3.86
1630 3150 5.366477 TCTGCACTGATGGATTTAGGTCATA 59.634 40.000 0.00 0.00 0.00 2.15
1651 3171 1.871772 CAGAAGCGTTTGCCCTCTG 59.128 57.895 0.00 3.49 44.31 3.35
1701 3221 1.074872 GCAATTCGCTTCAGCTTGGC 61.075 55.000 0.00 0.00 39.32 4.52
1739 3262 3.755378 GGATGATGCTTCTCACAACAAGT 59.245 43.478 0.88 0.00 0.00 3.16
1788 3311 4.114058 ACACGGCTTCGCTAATACTAAA 57.886 40.909 0.00 0.00 37.41 1.85
1790 3313 3.119388 ACAACACGGCTTCGCTAATACTA 60.119 43.478 0.00 0.00 37.41 1.82
1800 3323 3.234386 GCTATTTTCACAACACGGCTTC 58.766 45.455 0.00 0.00 0.00 3.86
1806 3329 4.458989 TCTGGATGGCTATTTTCACAACAC 59.541 41.667 0.00 0.00 0.00 3.32
1863 3386 5.966636 TTGAACCATCTCGATTCATAACG 57.033 39.130 0.00 0.00 32.61 3.18
1901 3424 3.689649 CGTTTATTTTGGGACTGAGGGAG 59.310 47.826 0.00 0.00 0.00 4.30
1902 3425 3.328343 TCGTTTATTTTGGGACTGAGGGA 59.672 43.478 0.00 0.00 0.00 4.20
1903 3426 3.439129 GTCGTTTATTTTGGGACTGAGGG 59.561 47.826 0.00 0.00 0.00 4.30
1904 3427 3.124636 CGTCGTTTATTTTGGGACTGAGG 59.875 47.826 0.00 0.00 0.00 3.86
1905 3428 3.424433 GCGTCGTTTATTTTGGGACTGAG 60.424 47.826 0.00 0.00 0.00 3.35
1906 3429 2.481185 GCGTCGTTTATTTTGGGACTGA 59.519 45.455 0.00 0.00 0.00 3.41
1907 3430 2.482721 AGCGTCGTTTATTTTGGGACTG 59.517 45.455 0.00 0.00 0.00 3.51
1908 3431 2.774687 AGCGTCGTTTATTTTGGGACT 58.225 42.857 0.00 0.00 0.00 3.85
1909 3432 3.547649 AAGCGTCGTTTATTTTGGGAC 57.452 42.857 0.00 0.00 0.00 4.46
1910 3433 4.317488 AGTAAGCGTCGTTTATTTTGGGA 58.683 39.130 4.80 0.00 0.00 4.37
1911 3434 4.673534 AGTAAGCGTCGTTTATTTTGGG 57.326 40.909 4.80 0.00 0.00 4.12
1912 3435 5.341196 CCAAAGTAAGCGTCGTTTATTTTGG 59.659 40.000 33.23 33.23 43.36 3.28
1913 3436 5.341196 CCCAAAGTAAGCGTCGTTTATTTTG 59.659 40.000 27.55 27.55 36.50 2.44
1914 3437 5.239087 TCCCAAAGTAAGCGTCGTTTATTTT 59.761 36.000 13.85 13.85 0.00 1.82
1915 3438 4.756135 TCCCAAAGTAAGCGTCGTTTATTT 59.244 37.500 4.80 4.47 0.00 1.40
1916 3439 4.152938 GTCCCAAAGTAAGCGTCGTTTATT 59.847 41.667 4.80 0.00 0.00 1.40
1917 3440 3.681417 GTCCCAAAGTAAGCGTCGTTTAT 59.319 43.478 4.80 0.00 0.00 1.40
1918 3441 3.059166 GTCCCAAAGTAAGCGTCGTTTA 58.941 45.455 0.00 0.00 0.00 2.01
1919 3442 1.869132 GTCCCAAAGTAAGCGTCGTTT 59.131 47.619 0.00 0.00 0.00 3.60
1920 3443 1.505425 GTCCCAAAGTAAGCGTCGTT 58.495 50.000 0.00 0.00 0.00 3.85
1921 3444 0.665369 CGTCCCAAAGTAAGCGTCGT 60.665 55.000 0.00 0.00 0.00 4.34
1922 3445 1.349259 CCGTCCCAAAGTAAGCGTCG 61.349 60.000 0.00 0.00 0.00 5.12
1923 3446 0.037975 TCCGTCCCAAAGTAAGCGTC 60.038 55.000 0.00 0.00 0.00 5.19
1924 3447 0.037605 CTCCGTCCCAAAGTAAGCGT 60.038 55.000 0.00 0.00 0.00 5.07
1925 3448 0.739813 CCTCCGTCCCAAAGTAAGCG 60.740 60.000 0.00 0.00 0.00 4.68
1926 3449 0.392595 CCCTCCGTCCCAAAGTAAGC 60.393 60.000 0.00 0.00 0.00 3.09
1927 3450 1.207329 CTCCCTCCGTCCCAAAGTAAG 59.793 57.143 0.00 0.00 0.00 2.34
1928 3451 1.272807 CTCCCTCCGTCCCAAAGTAA 58.727 55.000 0.00 0.00 0.00 2.24
1929 3452 0.115745 ACTCCCTCCGTCCCAAAGTA 59.884 55.000 0.00 0.00 0.00 2.24
1930 3453 0.115745 TACTCCCTCCGTCCCAAAGT 59.884 55.000 0.00 0.00 0.00 2.66
1931 3454 1.139058 CATACTCCCTCCGTCCCAAAG 59.861 57.143 0.00 0.00 0.00 2.77
1932 3455 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
1933 3456 1.335132 GCATACTCCCTCCGTCCCAA 61.335 60.000 0.00 0.00 0.00 4.12
1934 3457 1.760875 GCATACTCCCTCCGTCCCA 60.761 63.158 0.00 0.00 0.00 4.37
1935 3458 0.178970 TAGCATACTCCCTCCGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
1936 3459 1.700955 TTAGCATACTCCCTCCGTCC 58.299 55.000 0.00 0.00 0.00 4.79
1937 3460 2.891580 TCATTAGCATACTCCCTCCGTC 59.108 50.000 0.00 0.00 0.00 4.79
1938 3461 2.958818 TCATTAGCATACTCCCTCCGT 58.041 47.619 0.00 0.00 0.00 4.69
1939 3462 4.058817 GTTTCATTAGCATACTCCCTCCG 58.941 47.826 0.00 0.00 0.00 4.63
1940 3463 4.058817 CGTTTCATTAGCATACTCCCTCC 58.941 47.826 0.00 0.00 0.00 4.30
1941 3464 4.945246 TCGTTTCATTAGCATACTCCCTC 58.055 43.478 0.00 0.00 0.00 4.30
1942 3465 5.116882 GTTCGTTTCATTAGCATACTCCCT 58.883 41.667 0.00 0.00 0.00 4.20
1943 3466 4.025979 CGTTCGTTTCATTAGCATACTCCC 60.026 45.833 0.00 0.00 0.00 4.30
1944 3467 4.025979 CCGTTCGTTTCATTAGCATACTCC 60.026 45.833 0.00 0.00 0.00 3.85
1945 3468 4.565564 ACCGTTCGTTTCATTAGCATACTC 59.434 41.667 0.00 0.00 0.00 2.59
1946 3469 4.501071 ACCGTTCGTTTCATTAGCATACT 58.499 39.130 0.00 0.00 0.00 2.12
1947 3470 4.852609 ACCGTTCGTTTCATTAGCATAC 57.147 40.909 0.00 0.00 0.00 2.39
1948 3471 5.653507 ACTACCGTTCGTTTCATTAGCATA 58.346 37.500 0.00 0.00 0.00 3.14
1949 3472 4.501071 ACTACCGTTCGTTTCATTAGCAT 58.499 39.130 0.00 0.00 0.00 3.79
1950 3473 3.916761 ACTACCGTTCGTTTCATTAGCA 58.083 40.909 0.00 0.00 0.00 3.49
1951 3474 4.916099 AACTACCGTTCGTTTCATTAGC 57.084 40.909 0.00 0.00 0.00 3.09
1966 3489 7.506114 TGAAATCCAGTATCCATGTAACTACC 58.494 38.462 0.00 0.00 0.00 3.18
1992 3515 0.681175 TGCTCTACTGCAGTTCAGCA 59.319 50.000 32.90 32.90 46.76 4.41
2004 3527 9.561069 TTTCCTCCAAAATTATCTATGCTCTAC 57.439 33.333 0.00 0.00 0.00 2.59
2019 3542 2.757868 CCATATGGCGTTTCCTCCAAAA 59.242 45.455 9.29 0.00 35.75 2.44
2079 3603 4.393834 TGAAGCTAGCACATGGTGTTAAA 58.606 39.130 18.83 0.00 35.75 1.52
2080 3604 4.014569 TGAAGCTAGCACATGGTGTTAA 57.985 40.909 18.83 0.00 35.75 2.01
2081 3605 3.694043 TGAAGCTAGCACATGGTGTTA 57.306 42.857 18.83 0.00 35.75 2.41
2090 3614 3.837213 TTGCAGAAATGAAGCTAGCAC 57.163 42.857 18.83 11.11 0.00 4.40
2153 3677 7.121168 CAGGATTCTGGCTTGTACTGAAAATTA 59.879 37.037 0.00 0.00 37.36 1.40
2177 3701 2.172372 GTGAGCCGAGATGCTGCAG 61.172 63.158 10.11 10.11 42.95 4.41
2280 3804 4.505808 CATGACAAATTGCCATGGCTTAA 58.494 39.130 35.53 23.65 35.07 1.85
2325 3849 8.726988 GCAGTTCTGTAAATACCACAATAAAGA 58.273 33.333 1.78 0.00 0.00 2.52
2326 3850 8.511321 TGCAGTTCTGTAAATACCACAATAAAG 58.489 33.333 1.78 0.00 0.00 1.85
2337 3861 6.711277 AGAGGACAATGCAGTTCTGTAAATA 58.289 36.000 0.00 0.00 0.00 1.40
2339 3863 4.973168 AGAGGACAATGCAGTTCTGTAAA 58.027 39.130 0.00 0.00 0.00 2.01
2343 3867 4.070716 AGAAAGAGGACAATGCAGTTCTG 58.929 43.478 0.00 0.00 0.00 3.02
2345 3869 4.322567 AGAGAAAGAGGACAATGCAGTTC 58.677 43.478 0.00 0.00 0.00 3.01
2350 3874 3.006247 GTGGAGAGAAAGAGGACAATGC 58.994 50.000 0.00 0.00 0.00 3.56
2351 3875 4.550076 AGTGGAGAGAAAGAGGACAATG 57.450 45.455 0.00 0.00 0.00 2.82
2366 3891 6.226787 ACTAGTTGAGTGAAATGAAGTGGAG 58.773 40.000 0.00 0.00 36.87 3.86
2370 3895 6.595716 GGCATACTAGTTGAGTGAAATGAAGT 59.404 38.462 0.00 0.00 39.39 3.01
2405 3931 7.337436 TCTTTTCTTCTTTTACCGAACAAAGGA 59.663 33.333 0.00 0.00 31.86 3.36
2410 3936 8.517056 AGTTTTCTTTTCTTCTTTTACCGAACA 58.483 29.630 0.00 0.00 0.00 3.18
2411 3937 8.906636 AGTTTTCTTTTCTTCTTTTACCGAAC 57.093 30.769 0.00 0.00 0.00 3.95
2432 3958 4.531339 GGGGAGTACTGAAGGACTAAGTTT 59.469 45.833 0.00 0.00 0.00 2.66
2483 4009 4.666512 ACATATTGCAGTCCCCCAATATC 58.333 43.478 3.60 0.00 40.68 1.63
2484 4010 4.747265 ACATATTGCAGTCCCCCAATAT 57.253 40.909 0.00 0.00 42.37 1.28
2485 4011 5.311913 TCATACATATTGCAGTCCCCCAATA 59.688 40.000 0.00 0.00 38.04 1.90
2486 4012 4.106179 TCATACATATTGCAGTCCCCCAAT 59.894 41.667 0.00 0.00 35.90 3.16
2487 4013 3.461458 TCATACATATTGCAGTCCCCCAA 59.539 43.478 0.00 0.00 0.00 4.12
2489 4015 3.788227 TCATACATATTGCAGTCCCCC 57.212 47.619 0.00 0.00 0.00 5.40
2491 4017 5.877012 CCAGTATCATACATATTGCAGTCCC 59.123 44.000 0.00 0.00 0.00 4.46
2492 4018 5.877012 CCCAGTATCATACATATTGCAGTCC 59.123 44.000 0.00 0.00 0.00 3.85
2493 4019 6.369890 CACCCAGTATCATACATATTGCAGTC 59.630 42.308 0.00 0.00 0.00 3.51
2501 4027 6.288294 GCAGTTTCACCCAGTATCATACATA 58.712 40.000 0.00 0.00 0.00 2.29
2515 4041 2.422276 AGCAAATTCGCAGTTTCACC 57.578 45.000 0.00 0.00 0.00 4.02
2516 4042 5.739161 CCTATAAGCAAATTCGCAGTTTCAC 59.261 40.000 0.00 0.00 0.00 3.18
2517 4043 5.645929 TCCTATAAGCAAATTCGCAGTTTCA 59.354 36.000 0.00 0.00 0.00 2.69
2518 4044 6.119144 TCCTATAAGCAAATTCGCAGTTTC 57.881 37.500 0.00 0.00 0.00 2.78
2522 4048 4.274459 AGCTTCCTATAAGCAAATTCGCAG 59.726 41.667 11.90 0.00 45.30 5.18
2525 4051 6.844696 TGTAGCTTCCTATAAGCAAATTCG 57.155 37.500 11.90 0.00 45.30 3.34
2536 4062 9.077885 TCAAAAAGATGTTTTGTAGCTTCCTAT 57.922 29.630 0.71 0.00 39.62 2.57
2537 4063 8.458573 TCAAAAAGATGTTTTGTAGCTTCCTA 57.541 30.769 0.71 0.00 39.62 2.94
2816 4343 6.868339 CCAAATTGTGAATGAAGAAACTACCC 59.132 38.462 0.00 0.00 0.00 3.69
2817 4344 7.433680 ACCAAATTGTGAATGAAGAAACTACC 58.566 34.615 0.00 0.00 0.00 3.18
2832 4359 2.886523 TCAGGCAGAGAACCAAATTGTG 59.113 45.455 0.00 0.00 0.00 3.33
2846 4373 3.624861 GTGAAGTATGGACATTCAGGCAG 59.375 47.826 0.00 0.00 33.83 4.85
2849 4376 3.200825 AGGGTGAAGTATGGACATTCAGG 59.799 47.826 0.00 0.00 33.83 3.86
2883 4410 1.901159 CACATGCCCAAAATTCCCTGA 59.099 47.619 0.00 0.00 0.00 3.86
3004 4531 5.067153 TGCAAGAAAAACAGCTGCTTACTAA 59.933 36.000 15.27 0.00 0.00 2.24
3010 4537 2.026641 TCTGCAAGAAAAACAGCTGCT 58.973 42.857 15.27 0.00 42.31 4.24
3131 4658 0.749649 ACAGATCAGCGTCATCCTCC 59.250 55.000 0.00 0.00 0.00 4.30
3276 4803 9.534565 TTGATCTATTCGATTTTGAGAACTAGG 57.465 33.333 0.00 0.00 30.84 3.02
3417 4945 6.176975 TGACGACAAACCTAATATGCAAAG 57.823 37.500 0.00 0.00 0.00 2.77
3418 4946 6.561737 TTGACGACAAACCTAATATGCAAA 57.438 33.333 0.00 0.00 32.73 3.68
3419 4947 6.561737 TTTGACGACAAACCTAATATGCAA 57.438 33.333 8.97 0.00 40.47 4.08
3496 5032 9.898152 TCCATCATGTAACATATTTTCACACTA 57.102 29.630 0.00 0.00 0.00 2.74
3537 5081 5.674052 ATACCAGCATTGCAAATACCAAA 57.326 34.783 11.91 0.00 0.00 3.28
3546 5090 9.149225 CAAGTTAAAAATAATACCAGCATTGCA 57.851 29.630 11.91 0.00 0.00 4.08
3588 5139 7.054751 GCCTATTAGGTTTGTCTTAAGTCCAT 58.945 38.462 11.38 0.00 37.80 3.41
3596 5147 5.763876 ACTCTGCCTATTAGGTTTGTCTT 57.236 39.130 11.38 0.00 37.80 3.01
3611 5162 4.505742 CCCTCCATTCCTATTTACTCTGCC 60.506 50.000 0.00 0.00 0.00 4.85
3613 5164 6.694445 ATCCCTCCATTCCTATTTACTCTG 57.306 41.667 0.00 0.00 0.00 3.35
3614 5165 8.997301 ATAATCCCTCCATTCCTATTTACTCT 57.003 34.615 0.00 0.00 0.00 3.24
3629 5180 7.976734 CGACATGACTAATCTTATAATCCCTCC 59.023 40.741 0.00 0.00 0.00 4.30
3683 5234 7.796838 TGAAATTTCTCTTGACTCGTTACATG 58.203 34.615 18.64 0.00 0.00 3.21
3686 5237 7.409465 ACTGAAATTTCTCTTGACTCGTTAC 57.591 36.000 18.64 0.00 0.00 2.50
3711 5262 9.058174 TGAATGTAATCTGAGACGGTTTAAAAA 57.942 29.630 0.00 0.00 0.00 1.94
3716 5267 5.794894 AGTGAATGTAATCTGAGACGGTTT 58.205 37.500 0.00 0.00 0.00 3.27
3731 5282 6.119536 TCCTTTCAAGTACACAAGTGAATGT 58.880 36.000 7.28 0.00 30.51 2.71
3737 5288 5.367945 TCCTTCCTTTCAAGTACACAAGT 57.632 39.130 0.00 0.00 0.00 3.16
3739 5290 5.820947 GTCTTCCTTCCTTTCAAGTACACAA 59.179 40.000 0.00 0.00 0.00 3.33
3750 5301 0.691332 GGGTCCGTCTTCCTTCCTTT 59.309 55.000 0.00 0.00 0.00 3.11
3753 5304 1.980772 TCGGGTCCGTCTTCCTTCC 60.981 63.158 9.36 0.00 40.74 3.46
3758 5309 1.885163 ATGTGGTCGGGTCCGTCTTC 61.885 60.000 9.36 2.85 40.74 2.87
3760 5311 2.283676 ATGTGGTCGGGTCCGTCT 60.284 61.111 9.36 0.00 40.74 4.18
3770 5321 1.197721 CGTTGGCAGAAAGATGTGGTC 59.802 52.381 0.00 0.00 0.00 4.02
3771 5322 1.238439 CGTTGGCAGAAAGATGTGGT 58.762 50.000 0.00 0.00 0.00 4.16
3773 5324 1.664016 GCACGTTGGCAGAAAGATGTG 60.664 52.381 4.48 4.48 0.00 3.21
3796 5347 2.228822 GGCACGTTGATTGATGAAACCT 59.771 45.455 0.00 0.00 0.00 3.50
3813 5364 1.375523 CCTAACTCACCACCGGCAC 60.376 63.158 0.00 0.00 0.00 5.01
3844 5409 1.971357 CCCACGGGATTACTCTATGCT 59.029 52.381 0.00 0.00 37.50 3.79
3883 5448 9.175312 CAGATATCTGGCAGCAAAATTAGATAT 57.825 33.333 22.89 4.78 39.34 1.63
3886 5451 5.240183 GCAGATATCTGGCAGCAAAATTAGA 59.760 40.000 29.43 0.00 43.94 2.10
3889 5454 3.702548 TGCAGATATCTGGCAGCAAAATT 59.297 39.130 29.43 0.00 43.94 1.82
3890 5455 3.293337 TGCAGATATCTGGCAGCAAAAT 58.707 40.909 29.43 0.08 43.94 1.82
3891 5456 2.725637 TGCAGATATCTGGCAGCAAAA 58.274 42.857 29.43 6.67 43.94 2.44
3892 5457 2.423446 TGCAGATATCTGGCAGCAAA 57.577 45.000 29.43 7.26 43.94 3.68
3893 5458 2.621526 CAATGCAGATATCTGGCAGCAA 59.378 45.455 29.43 10.04 43.94 3.91
3894 5459 2.227194 CAATGCAGATATCTGGCAGCA 58.773 47.619 29.43 22.34 43.94 4.41
3895 5460 2.228059 ACAATGCAGATATCTGGCAGC 58.772 47.619 29.43 17.92 43.94 5.25
3896 5461 3.750130 GGTACAATGCAGATATCTGGCAG 59.250 47.826 29.43 18.97 43.94 4.85
3897 5462 3.496692 GGGTACAATGCAGATATCTGGCA 60.497 47.826 29.43 25.96 43.94 4.92
3898 5463 3.077359 GGGTACAATGCAGATATCTGGC 58.923 50.000 29.43 22.10 43.94 4.85
3899 5464 4.040829 TGAGGGTACAATGCAGATATCTGG 59.959 45.833 29.43 17.33 43.94 3.86
3900 5465 5.219343 TGAGGGTACAATGCAGATATCTG 57.781 43.478 25.64 25.64 46.40 2.90
3901 5466 5.337089 CGATGAGGGTACAATGCAGATATCT 60.337 44.000 0.00 0.00 0.00 1.98
3902 5467 4.867047 CGATGAGGGTACAATGCAGATATC 59.133 45.833 0.00 0.00 0.00 1.63
3903 5468 4.528206 TCGATGAGGGTACAATGCAGATAT 59.472 41.667 0.00 0.00 0.00 1.63
3904 5469 3.895041 TCGATGAGGGTACAATGCAGATA 59.105 43.478 0.00 0.00 0.00 1.98
3905 5470 2.700371 TCGATGAGGGTACAATGCAGAT 59.300 45.455 0.00 0.00 0.00 2.90
3906 5471 2.107366 TCGATGAGGGTACAATGCAGA 58.893 47.619 0.00 0.00 0.00 4.26
3907 5472 2.602257 TCGATGAGGGTACAATGCAG 57.398 50.000 0.00 0.00 0.00 4.41
3908 5473 3.552068 CGTATCGATGAGGGTACAATGCA 60.552 47.826 8.54 0.00 0.00 3.96
3909 5474 2.987149 CGTATCGATGAGGGTACAATGC 59.013 50.000 8.54 0.00 0.00 3.56
3910 5475 4.227538 GTCGTATCGATGAGGGTACAATG 58.772 47.826 8.54 0.00 38.42 2.82
3911 5476 3.058432 CGTCGTATCGATGAGGGTACAAT 60.058 47.826 8.54 0.00 44.49 2.71
3935 5500 1.987855 TCCTCCCACACGGCCTAAG 60.988 63.158 0.00 0.00 0.00 2.18
3943 5508 3.134563 GGGAAGGATGTCCTCCCACAC 62.135 61.905 21.80 6.78 43.31 3.82
3955 5520 3.463704 GGGAAATAGTGAAGGGGAAGGAT 59.536 47.826 0.00 0.00 0.00 3.24
3957 5522 2.853077 AGGGAAATAGTGAAGGGGAAGG 59.147 50.000 0.00 0.00 0.00 3.46
3960 5525 2.226039 TGGAGGGAAATAGTGAAGGGGA 60.226 50.000 0.00 0.00 0.00 4.81
3962 5527 4.316025 TTTGGAGGGAAATAGTGAAGGG 57.684 45.455 0.00 0.00 0.00 3.95
3988 5553 1.273327 CAACTTGGTGGCCATCTTTCC 59.727 52.381 18.94 10.20 31.53 3.13
4025 5590 9.998106 GAAAGCAAGGTATTATCCTAATACTGA 57.002 33.333 13.76 0.00 36.74 3.41
4180 5756 2.269023 AGATGAGTTGGGTGTCATGGA 58.731 47.619 0.00 0.00 33.43 3.41
4210 5786 0.320697 CTAGTGGGGTATTAGGCGCC 59.679 60.000 21.89 21.89 39.13 6.53
4218 5794 6.449956 TCATTAGGAAGTTCTAGTGGGGTAT 58.550 40.000 2.25 0.00 30.81 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.