Multiple sequence alignment - TraesCS5D01G286000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G286000 chr5D 100.000 2882 0 0 1 2882 386511909 386514790 0.000000e+00 5323.0
1 TraesCS5D01G286000 chr5D 92.588 877 53 7 766 1636 386589261 386590131 0.000000e+00 1249.0
2 TraesCS5D01G286000 chr5D 86.233 661 71 15 1001 1657 386209788 386210432 0.000000e+00 699.0
3 TraesCS5D01G286000 chr5D 91.925 322 22 4 425 745 386588953 386589271 5.660000e-122 448.0
4 TraesCS5D01G286000 chr5D 93.103 116 8 0 2175 2290 386590130 386590245 1.370000e-38 171.0
5 TraesCS5D01G286000 chr5D 90.517 116 11 0 293 408 386588770 386588885 1.380000e-33 154.0
6 TraesCS5D01G286000 chr5D 87.611 113 13 1 2 113 386564104 386564216 2.330000e-26 130.0
7 TraesCS5D01G286000 chr5D 92.105 76 5 1 2807 2882 194157214 194157288 3.930000e-19 106.0
8 TraesCS5D01G286000 chr5D 90.789 76 6 1 2807 2882 490820518 490820592 1.830000e-17 100.0
9 TraesCS5D01G286000 chr5B 95.686 904 32 1 766 1669 464170802 464171698 0.000000e+00 1447.0
10 TraesCS5D01G286000 chr5B 92.784 873 47 6 766 1636 464195089 464195947 0.000000e+00 1249.0
11 TraesCS5D01G286000 chr5B 86.536 661 69 15 1001 1657 464144532 464145176 0.000000e+00 710.0
12 TraesCS5D01G286000 chr5B 92.931 481 25 3 2411 2882 464187964 464188444 0.000000e+00 691.0
13 TraesCS5D01G286000 chr5B 91.935 496 18 8 1664 2150 464178048 464178530 0.000000e+00 675.0
14 TraesCS5D01G286000 chr5B 91.988 337 22 5 413 748 464194770 464195102 4.350000e-128 468.0
15 TraesCS5D01G286000 chr5B 94.604 278 15 0 2139 2416 464178940 464179217 5.700000e-117 431.0
16 TraesCS5D01G286000 chr5B 93.333 285 19 0 1 285 464157238 464157522 3.430000e-114 422.0
17 TraesCS5D01G286000 chr5B 90.441 272 24 2 286 557 464157556 464157825 9.820000e-95 357.0
18 TraesCS5D01G286000 chr5B 86.942 291 23 2 2175 2450 464195946 464196236 2.160000e-81 313.0
19 TraesCS5D01G286000 chr5B 97.159 176 4 1 573 748 464170641 464170815 2.170000e-76 296.0
20 TraesCS5D01G286000 chr5B 91.228 114 10 0 295 408 464194608 464194721 3.840000e-34 156.0
21 TraesCS5D01G286000 chr5A 91.765 935 51 16 1168 2091 488047430 488048349 0.000000e+00 1277.0
22 TraesCS5D01G286000 chr5A 91.963 871 43 7 766 1636 488050745 488051588 0.000000e+00 1195.0
23 TraesCS5D01G286000 chr5A 86.316 665 63 18 1001 1657 488038461 488039105 0.000000e+00 699.0
24 TraesCS5D01G286000 chr5A 88.916 415 30 5 766 1178 488046554 488046954 5.550000e-137 497.0
25 TraesCS5D01G286000 chr5A 84.760 479 36 13 293 748 488050294 488050758 2.040000e-121 446.0
26 TraesCS5D01G286000 chr5A 91.930 285 22 1 1 285 488045860 488046143 5.790000e-107 398.0
27 TraesCS5D01G286000 chr5A 92.405 237 18 0 286 522 488046177 488046413 3.560000e-89 339.0
28 TraesCS5D01G286000 chr5A 94.872 156 8 0 591 746 488046410 488046565 7.980000e-61 244.0
29 TraesCS5D01G286000 chr5A 93.162 117 8 0 2175 2291 488051587 488051703 3.820000e-39 172.0
30 TraesCS5D01G286000 chr4D 92.105 76 5 1 2807 2882 137094226 137094300 3.930000e-19 106.0
31 TraesCS5D01G286000 chr4D 92.105 76 5 1 2807 2882 485354704 485354778 3.930000e-19 106.0
32 TraesCS5D01G286000 chr4B 93.151 73 4 1 2810 2882 415023387 415023316 3.930000e-19 106.0
33 TraesCS5D01G286000 chr2A 93.056 72 4 1 2811 2882 288167132 288167062 1.410000e-18 104.0
34 TraesCS5D01G286000 chrUn 91.781 73 5 1 2810 2882 110892568 110892497 1.830000e-17 100.0
35 TraesCS5D01G286000 chr6D 91.781 73 5 1 2810 2882 293450438 293450367 1.830000e-17 100.0
36 TraesCS5D01G286000 chr7B 95.000 40 1 1 2481 2519 57061906 57061867 8.620000e-06 62.1
37 TraesCS5D01G286000 chr1A 91.111 45 3 1 2479 2522 575775586 575775542 3.100000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G286000 chr5D 386511909 386514790 2881 False 5323.0 5323 100.000000 1 2882 1 chr5D.!!$F3 2881
1 TraesCS5D01G286000 chr5D 386209788 386210432 644 False 699.0 699 86.233000 1001 1657 1 chr5D.!!$F2 656
2 TraesCS5D01G286000 chr5D 386588770 386590245 1475 False 505.5 1249 92.033250 293 2290 4 chr5D.!!$F6 1997
3 TraesCS5D01G286000 chr5B 464170641 464171698 1057 False 871.5 1447 96.422500 573 1669 2 chr5B.!!$F4 1096
4 TraesCS5D01G286000 chr5B 464144532 464145176 644 False 710.0 710 86.536000 1001 1657 1 chr5B.!!$F1 656
5 TraesCS5D01G286000 chr5B 464178048 464179217 1169 False 553.0 675 93.269500 1664 2416 2 chr5B.!!$F5 752
6 TraesCS5D01G286000 chr5B 464194608 464196236 1628 False 546.5 1249 90.735500 295 2450 4 chr5B.!!$F6 2155
7 TraesCS5D01G286000 chr5B 464157238 464157825 587 False 389.5 422 91.887000 1 557 2 chr5B.!!$F3 556
8 TraesCS5D01G286000 chr5A 488038461 488039105 644 False 699.0 699 86.316000 1001 1657 1 chr5A.!!$F1 656
9 TraesCS5D01G286000 chr5A 488045860 488051703 5843 False 571.0 1277 91.221625 1 2291 8 chr5A.!!$F2 2290

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
865 5085 0.033208 ATACATTGCACCCCCACCAG 60.033 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2722 7391 0.036164 CCACTCATCCAACCCACGAA 59.964 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 5.534207 TGCCATGTGTTTCAGAGATTTTT 57.466 34.783 0.00 0.00 0.00 1.94
185 186 0.521291 CACGCGGAATGTCCATGTTT 59.479 50.000 12.47 0.00 35.91 2.83
216 217 1.202651 AGTCAGGGAACACAAACCTCG 60.203 52.381 0.00 0.00 30.66 4.63
224 225 0.386476 ACACAAACCTCGTACGCTCA 59.614 50.000 11.24 0.00 0.00 4.26
291 325 2.811431 CAAAGAACCAAGACGCACCATA 59.189 45.455 0.00 0.00 0.00 2.74
340 374 1.067821 CGTCTCCTCTACATGCTTCCC 59.932 57.143 0.00 0.00 0.00 3.97
341 375 2.111384 GTCTCCTCTACATGCTTCCCA 58.889 52.381 0.00 0.00 0.00 4.37
420 498 4.374399 CCGAAAAACGTATATACCCTGCT 58.626 43.478 7.30 0.00 40.78 4.24
486 4703 2.282958 AGGGTCTCGTTCCTCGCA 60.283 61.111 0.00 0.00 39.67 5.10
514 4731 3.834799 GGAAGATCGACCGGCGGT 61.835 66.667 34.81 34.81 41.33 5.68
568 4785 5.354234 GGAGGAAAAGAACGATTATGCTTCA 59.646 40.000 0.00 0.00 0.00 3.02
672 4889 7.663905 TGCCTTACACTCACAACAAATACTTAT 59.336 33.333 0.00 0.00 0.00 1.73
734 4952 7.168469 CGTACCATTATTGACATCGTGACATTA 59.832 37.037 0.00 0.00 0.00 1.90
735 4953 7.482654 ACCATTATTGACATCGTGACATTAG 57.517 36.000 0.00 0.00 0.00 1.73
736 4954 7.272244 ACCATTATTGACATCGTGACATTAGA 58.728 34.615 0.00 0.00 0.00 2.10
737 4955 7.768582 ACCATTATTGACATCGTGACATTAGAA 59.231 33.333 0.00 0.00 0.00 2.10
738 4956 8.278408 CCATTATTGACATCGTGACATTAGAAG 58.722 37.037 0.00 0.00 0.00 2.85
739 4957 7.770801 TTATTGACATCGTGACATTAGAAGG 57.229 36.000 0.00 0.00 0.00 3.46
740 4958 4.123497 TGACATCGTGACATTAGAAGGG 57.877 45.455 0.00 0.00 0.00 3.95
741 4959 3.513912 TGACATCGTGACATTAGAAGGGT 59.486 43.478 0.00 0.00 0.00 4.34
742 4960 4.020573 TGACATCGTGACATTAGAAGGGTT 60.021 41.667 0.00 0.00 0.00 4.11
743 4961 4.504858 ACATCGTGACATTAGAAGGGTTC 58.495 43.478 0.00 0.00 0.00 3.62
744 4962 4.020573 ACATCGTGACATTAGAAGGGTTCA 60.021 41.667 0.00 0.00 0.00 3.18
745 4963 4.819105 TCGTGACATTAGAAGGGTTCAT 57.181 40.909 0.00 0.00 0.00 2.57
746 4964 4.503910 TCGTGACATTAGAAGGGTTCATG 58.496 43.478 0.00 0.00 0.00 3.07
747 4965 4.020573 TCGTGACATTAGAAGGGTTCATGT 60.021 41.667 0.00 0.00 31.37 3.21
748 4966 4.695455 CGTGACATTAGAAGGGTTCATGTT 59.305 41.667 0.00 0.00 29.56 2.71
749 4967 5.181245 CGTGACATTAGAAGGGTTCATGTTT 59.819 40.000 0.00 0.00 29.56 2.83
750 4968 6.293955 CGTGACATTAGAAGGGTTCATGTTTT 60.294 38.462 0.00 0.00 29.56 2.43
751 4969 6.863126 GTGACATTAGAAGGGTTCATGTTTTG 59.137 38.462 0.00 0.00 29.56 2.44
752 4970 6.549364 TGACATTAGAAGGGTTCATGTTTTGT 59.451 34.615 0.00 0.00 29.56 2.83
753 4971 6.981722 ACATTAGAAGGGTTCATGTTTTGTC 58.018 36.000 0.00 0.00 0.00 3.18
754 4972 5.682943 TTAGAAGGGTTCATGTTTTGTCG 57.317 39.130 0.00 0.00 0.00 4.35
755 4973 2.884639 AGAAGGGTTCATGTTTTGTCGG 59.115 45.455 0.00 0.00 0.00 4.79
756 4974 2.649531 AGGGTTCATGTTTTGTCGGA 57.350 45.000 0.00 0.00 0.00 4.55
757 4975 2.938838 AGGGTTCATGTTTTGTCGGAA 58.061 42.857 0.00 0.00 0.00 4.30
758 4976 3.292460 AGGGTTCATGTTTTGTCGGAAA 58.708 40.909 0.00 0.00 0.00 3.13
759 4977 3.702045 AGGGTTCATGTTTTGTCGGAAAA 59.298 39.130 0.00 0.00 0.00 2.29
760 4978 4.160626 AGGGTTCATGTTTTGTCGGAAAAA 59.839 37.500 0.00 0.00 0.00 1.94
789 5007 2.236395 AGGGTTCATGTACTTTCGAGGG 59.764 50.000 2.29 0.00 0.00 4.30
861 5081 0.258484 CCAGATACATTGCACCCCCA 59.742 55.000 0.00 0.00 0.00 4.96
862 5082 1.392589 CAGATACATTGCACCCCCAC 58.607 55.000 0.00 0.00 0.00 4.61
863 5083 0.258774 AGATACATTGCACCCCCACC 59.741 55.000 0.00 0.00 0.00 4.61
864 5084 0.033601 GATACATTGCACCCCCACCA 60.034 55.000 0.00 0.00 0.00 4.17
865 5085 0.033208 ATACATTGCACCCCCACCAG 60.033 55.000 0.00 0.00 0.00 4.00
866 5086 2.779742 TACATTGCACCCCCACCAGC 62.780 60.000 0.00 0.00 0.00 4.85
867 5087 3.593680 ATTGCACCCCCACCAGCT 61.594 61.111 0.00 0.00 0.00 4.24
966 5190 7.355778 CAAACATCAACTCAAAACCTCTAGAC 58.644 38.462 0.00 0.00 0.00 2.59
975 5199 0.610687 AACCTCTAGACAGCTGGTGC 59.389 55.000 19.93 7.03 40.05 5.01
1017 5241 4.141965 ATGGCATCCGCGACGACA 62.142 61.111 8.23 3.50 39.92 4.35
1054 5278 0.769873 CTCCATTATCCAGCTGGCCT 59.230 55.000 28.91 19.29 34.44 5.19
1464 5688 2.995574 AAGGTGCGGCTCTACGGT 60.996 61.111 0.00 0.00 0.00 4.83
1742 5966 3.827898 GTCGACCGAGGAGGCTGG 61.828 72.222 3.51 0.00 46.52 4.85
1752 5976 3.075005 GAGGCTGGCGGTGACCTA 61.075 66.667 0.00 0.00 30.95 3.08
1761 5985 1.077930 CGGTGACCTAGAGACGGGA 60.078 63.158 0.00 0.00 0.00 5.14
1884 6108 5.041940 GGTTTCTTCGCGACTGTATAATCT 58.958 41.667 9.15 0.00 0.00 2.40
1887 6111 2.963498 TCGCGACTGTATAATCTCGG 57.037 50.000 3.71 0.00 0.00 4.63
1891 6115 3.298317 GCGACTGTATAATCTCGGTGAC 58.702 50.000 0.00 0.00 0.00 3.67
1917 6141 4.552166 AATTTGTCAACTGGAGAACGTG 57.448 40.909 0.00 0.00 0.00 4.49
1919 6143 2.218953 TGTCAACTGGAGAACGTGTC 57.781 50.000 0.00 0.00 0.00 3.67
1924 6148 1.546961 ACTGGAGAACGTGTCTAGGG 58.453 55.000 13.86 4.96 36.41 3.53
2014 6247 7.616313 TGTTGTATTTTCAAGAGGGTGTTTTT 58.384 30.769 0.00 0.00 0.00 1.94
2025 6258 4.099419 AGAGGGTGTTTTTGTTTCATGGTC 59.901 41.667 0.00 0.00 0.00 4.02
2026 6259 3.772025 AGGGTGTTTTTGTTTCATGGTCA 59.228 39.130 0.00 0.00 0.00 4.02
2027 6260 4.408596 AGGGTGTTTTTGTTTCATGGTCAT 59.591 37.500 0.00 0.00 0.00 3.06
2028 6261 5.104569 AGGGTGTTTTTGTTTCATGGTCATT 60.105 36.000 0.00 0.00 0.00 2.57
2029 6262 5.588246 GGGTGTTTTTGTTTCATGGTCATTT 59.412 36.000 0.00 0.00 0.00 2.32
2030 6263 6.094742 GGGTGTTTTTGTTTCATGGTCATTTT 59.905 34.615 0.00 0.00 0.00 1.82
2031 6264 6.966066 GGTGTTTTTGTTTCATGGTCATTTTG 59.034 34.615 0.00 0.00 0.00 2.44
2032 6265 7.148340 GGTGTTTTTGTTTCATGGTCATTTTGA 60.148 33.333 0.00 0.00 0.00 2.69
2033 6266 7.904461 GTGTTTTTGTTTCATGGTCATTTTGAG 59.096 33.333 0.00 0.00 0.00 3.02
2051 6284 4.167554 TGAGTTTGGTGTGTTTGTCAAC 57.832 40.909 0.00 0.00 0.00 3.18
2055 6288 1.809684 TGGTGTGTTTGTCAACGTGA 58.190 45.000 0.00 0.00 35.40 4.35
2056 6289 2.360844 TGGTGTGTTTGTCAACGTGAT 58.639 42.857 0.00 0.00 35.40 3.06
2077 6310 6.037610 GTGATTTATTGGATGAGTTCGAAGCT 59.962 38.462 0.00 0.00 0.00 3.74
2080 6313 6.817765 TTATTGGATGAGTTCGAAGCTTTT 57.182 33.333 0.00 0.00 0.00 2.27
2081 6314 5.712152 ATTGGATGAGTTCGAAGCTTTTT 57.288 34.783 0.00 0.00 0.00 1.94
2277 6931 4.969999 GGGAAGGAGAAGGAAGTAGGTAAT 59.030 45.833 0.00 0.00 0.00 1.89
2320 6989 1.634973 TCTTGGGGATGATCAGTTGCA 59.365 47.619 0.09 0.00 0.00 4.08
2330 6999 6.091713 GGGATGATCAGTTGCAAAAGAAAATG 59.908 38.462 0.00 0.00 0.00 2.32
2436 7105 8.143193 ACTATGAGCACTTCTAATTCAGATGAG 58.857 37.037 0.00 0.00 33.61 2.90
2450 7119 8.853077 AATTCAGATGAGTTCACAATAGTTCA 57.147 30.769 0.00 0.00 0.00 3.18
2451 7120 9.458727 AATTCAGATGAGTTCACAATAGTTCAT 57.541 29.630 0.00 0.00 0.00 2.57
2452 7121 7.838771 TCAGATGAGTTCACAATAGTTCATG 57.161 36.000 0.00 0.00 0.00 3.07
2453 7122 7.389232 TCAGATGAGTTCACAATAGTTCATGT 58.611 34.615 0.00 0.00 0.00 3.21
2454 7123 7.332678 TCAGATGAGTTCACAATAGTTCATGTG 59.667 37.037 0.00 0.00 46.44 3.21
2464 7133 7.581213 ACAATAGTTCATGTGAAGGACAAAA 57.419 32.000 0.00 0.00 38.36 2.44
2465 7134 8.006298 ACAATAGTTCATGTGAAGGACAAAAA 57.994 30.769 0.00 0.00 38.36 1.94
2466 7135 8.641541 ACAATAGTTCATGTGAAGGACAAAAAT 58.358 29.630 0.00 0.00 38.36 1.82
2471 7140 8.695456 AGTTCATGTGAAGGACAAAAATAAAGT 58.305 29.630 0.00 0.00 38.36 2.66
2472 7141 9.313118 GTTCATGTGAAGGACAAAAATAAAGTT 57.687 29.630 0.00 0.00 38.36 2.66
2473 7142 9.883142 TTCATGTGAAGGACAAAAATAAAGTTT 57.117 25.926 0.00 0.00 38.36 2.66
2474 7143 9.883142 TCATGTGAAGGACAAAAATAAAGTTTT 57.117 25.926 0.00 0.00 38.36 2.43
2482 7151 9.884636 AGGACAAAAATAAAGTTTTAGTTTGCT 57.115 25.926 9.85 5.18 39.21 3.91
2501 7170 4.985044 GCTTTATTTATAAGCGAGGCGA 57.015 40.909 0.00 0.00 38.68 5.54
2502 7171 5.338614 GCTTTATTTATAAGCGAGGCGAA 57.661 39.130 0.00 0.00 38.68 4.70
2503 7172 5.744490 GCTTTATTTATAAGCGAGGCGAAA 58.256 37.500 0.00 0.00 38.68 3.46
2504 7173 5.846473 GCTTTATTTATAAGCGAGGCGAAAG 59.154 40.000 0.00 0.00 38.68 2.62
2505 7174 7.530052 GCTTTATTTATAAGCGAGGCGAAAGC 61.530 42.308 0.00 0.00 46.65 3.51
2521 7190 4.657436 GAAAGCCTATTTCGAGAGAGGA 57.343 45.455 20.00 0.00 43.69 3.71
2522 7191 4.364860 GAAAGCCTATTTCGAGAGAGGAC 58.635 47.826 20.00 11.05 43.69 3.85
2523 7192 2.312390 AGCCTATTTCGAGAGAGGACC 58.688 52.381 20.00 3.68 43.69 4.46
2524 7193 2.032620 GCCTATTTCGAGAGAGGACCA 58.967 52.381 20.00 0.00 43.69 4.02
2525 7194 2.431057 GCCTATTTCGAGAGAGGACCAA 59.569 50.000 20.00 0.00 43.69 3.67
2526 7195 3.118738 GCCTATTTCGAGAGAGGACCAAA 60.119 47.826 20.00 0.00 43.69 3.28
2527 7196 4.623171 GCCTATTTCGAGAGAGGACCAAAA 60.623 45.833 20.00 0.00 43.69 2.44
2528 7197 5.675538 CCTATTTCGAGAGAGGACCAAAAT 58.324 41.667 11.04 0.00 43.69 1.82
2529 7198 6.685620 GCCTATTTCGAGAGAGGACCAAAATA 60.686 42.308 20.00 0.00 43.69 1.40
2530 7199 7.272978 CCTATTTCGAGAGAGGACCAAAATAA 58.727 38.462 11.04 0.00 43.69 1.40
2531 7200 7.769044 CCTATTTCGAGAGAGGACCAAAATAAA 59.231 37.037 11.04 0.00 43.69 1.40
2532 7201 7.996098 ATTTCGAGAGAGGACCAAAATAAAA 57.004 32.000 0.00 0.00 43.69 1.52
2533 7202 7.996098 TTTCGAGAGAGGACCAAAATAAAAT 57.004 32.000 0.00 0.00 43.69 1.82
2534 7203 7.996098 TTCGAGAGAGGACCAAAATAAAATT 57.004 32.000 0.00 0.00 43.69 1.82
2535 7204 9.509956 TTTCGAGAGAGGACCAAAATAAAATTA 57.490 29.630 0.00 0.00 43.69 1.40
2536 7205 9.509956 TTCGAGAGAGGACCAAAATAAAATTAA 57.490 29.630 0.00 0.00 43.69 1.40
2537 7206 9.681062 TCGAGAGAGGACCAAAATAAAATTAAT 57.319 29.630 0.00 0.00 34.84 1.40
2538 7207 9.937175 CGAGAGAGGACCAAAATAAAATTAATC 57.063 33.333 0.00 0.00 0.00 1.75
2571 7240 8.756486 AAGAATGTGGATATCAACATGAATGA 57.244 30.769 23.64 3.88 0.00 2.57
2572 7241 8.935614 AGAATGTGGATATCAACATGAATGAT 57.064 30.769 23.64 18.17 40.49 2.45
2576 7245 8.977267 TGTGGATATCAACATGAATGATAACA 57.023 30.769 21.32 19.69 41.64 2.41
2577 7246 9.406113 TGTGGATATCAACATGAATGATAACAA 57.594 29.630 21.32 14.02 41.64 2.83
2594 7263 8.146479 TGATAACAATTAGTGATCATGAGCAC 57.854 34.615 31.72 31.72 42.15 4.40
2605 7274 7.731556 GTGATCATGAGCACAGTTTTAATTC 57.268 36.000 33.23 6.63 46.12 2.17
2606 7275 6.467047 GTGATCATGAGCACAGTTTTAATTCG 59.533 38.462 33.23 0.00 46.12 3.34
2607 7276 5.940192 TCATGAGCACAGTTTTAATTCGT 57.060 34.783 0.00 0.00 0.00 3.85
2608 7277 5.927030 TCATGAGCACAGTTTTAATTCGTC 58.073 37.500 0.00 0.00 0.00 4.20
2609 7278 5.700832 TCATGAGCACAGTTTTAATTCGTCT 59.299 36.000 0.00 0.00 0.00 4.18
2610 7279 6.871492 TCATGAGCACAGTTTTAATTCGTCTA 59.129 34.615 0.00 0.00 0.00 2.59
2611 7280 6.462073 TGAGCACAGTTTTAATTCGTCTAC 57.538 37.500 0.00 0.00 0.00 2.59
2612 7281 6.220930 TGAGCACAGTTTTAATTCGTCTACT 58.779 36.000 0.00 0.00 0.00 2.57
2613 7282 7.372714 TGAGCACAGTTTTAATTCGTCTACTA 58.627 34.615 0.00 0.00 0.00 1.82
2614 7283 8.033038 TGAGCACAGTTTTAATTCGTCTACTAT 58.967 33.333 0.00 0.00 0.00 2.12
2615 7284 9.512435 GAGCACAGTTTTAATTCGTCTACTATA 57.488 33.333 0.00 0.00 0.00 1.31
2616 7285 9.865321 AGCACAGTTTTAATTCGTCTACTATAA 57.135 29.630 0.00 0.00 0.00 0.98
2629 7298 9.736414 TTCGTCTACTATAAGGTATGCTAATCT 57.264 33.333 0.00 0.00 0.00 2.40
2630 7299 9.736414 TCGTCTACTATAAGGTATGCTAATCTT 57.264 33.333 0.00 0.00 0.00 2.40
2631 7300 9.776158 CGTCTACTATAAGGTATGCTAATCTTG 57.224 37.037 0.00 0.00 0.00 3.02
2632 7301 9.575783 GTCTACTATAAGGTATGCTAATCTTGC 57.424 37.037 0.00 0.00 0.00 4.01
2633 7302 9.535170 TCTACTATAAGGTATGCTAATCTTGCT 57.465 33.333 0.00 0.00 0.00 3.91
2634 7303 9.579768 CTACTATAAGGTATGCTAATCTTGCTG 57.420 37.037 0.00 0.00 0.00 4.41
2635 7304 8.195165 ACTATAAGGTATGCTAATCTTGCTGA 57.805 34.615 0.00 0.00 0.00 4.26
2636 7305 8.310382 ACTATAAGGTATGCTAATCTTGCTGAG 58.690 37.037 0.00 0.00 0.00 3.35
2637 7306 5.620738 AAGGTATGCTAATCTTGCTGAGA 57.379 39.130 0.00 0.00 39.13 3.27
2638 7307 5.620738 AGGTATGCTAATCTTGCTGAGAA 57.379 39.130 0.00 0.00 38.06 2.87
2639 7308 5.363939 AGGTATGCTAATCTTGCTGAGAAC 58.636 41.667 0.00 0.00 38.06 3.01
2640 7309 5.104776 AGGTATGCTAATCTTGCTGAGAACA 60.105 40.000 0.00 0.00 38.06 3.18
2641 7310 5.586243 GGTATGCTAATCTTGCTGAGAACAA 59.414 40.000 0.00 0.00 38.06 2.83
2642 7311 6.261826 GGTATGCTAATCTTGCTGAGAACAAT 59.738 38.462 0.00 0.00 38.06 2.71
2643 7312 6.770746 ATGCTAATCTTGCTGAGAACAATT 57.229 33.333 0.00 0.00 38.06 2.32
2644 7313 6.579666 TGCTAATCTTGCTGAGAACAATTT 57.420 33.333 0.00 0.00 38.06 1.82
2645 7314 6.985117 TGCTAATCTTGCTGAGAACAATTTT 58.015 32.000 0.00 0.00 38.06 1.82
2646 7315 7.436118 TGCTAATCTTGCTGAGAACAATTTTT 58.564 30.769 0.00 0.00 38.06 1.94
2669 7338 8.707796 TTTTGGTAATATGTGTAGTTTTGGGA 57.292 30.769 0.00 0.00 0.00 4.37
2670 7339 8.887264 TTTGGTAATATGTGTAGTTTTGGGAT 57.113 30.769 0.00 0.00 0.00 3.85
2671 7340 7.873719 TGGTAATATGTGTAGTTTTGGGATG 57.126 36.000 0.00 0.00 0.00 3.51
2672 7341 7.406916 TGGTAATATGTGTAGTTTTGGGATGT 58.593 34.615 0.00 0.00 0.00 3.06
2673 7342 7.554835 TGGTAATATGTGTAGTTTTGGGATGTC 59.445 37.037 0.00 0.00 0.00 3.06
2674 7343 7.012989 GGTAATATGTGTAGTTTTGGGATGTCC 59.987 40.741 0.00 0.00 0.00 4.02
2675 7344 3.866703 TGTGTAGTTTTGGGATGTCCA 57.133 42.857 0.86 0.00 45.43 4.02
2682 7351 3.086143 TGGGATGTCCAATGCCGT 58.914 55.556 0.86 0.00 43.84 5.68
2683 7352 1.077787 TGGGATGTCCAATGCCGTC 60.078 57.895 0.86 0.00 43.84 4.79
2684 7353 1.077787 GGGATGTCCAATGCCGTCA 60.078 57.895 0.86 0.00 37.91 4.35
2685 7354 0.679640 GGGATGTCCAATGCCGTCAA 60.680 55.000 0.86 0.00 37.91 3.18
2686 7355 1.392589 GGATGTCCAATGCCGTCAAT 58.607 50.000 0.00 0.00 35.64 2.57
2687 7356 1.334869 GGATGTCCAATGCCGTCAATC 59.665 52.381 0.00 0.00 35.64 2.67
2688 7357 2.292267 GATGTCCAATGCCGTCAATCT 58.708 47.619 0.00 0.00 0.00 2.40
2689 7358 1.737838 TGTCCAATGCCGTCAATCTC 58.262 50.000 0.00 0.00 0.00 2.75
2690 7359 1.017387 GTCCAATGCCGTCAATCTCC 58.983 55.000 0.00 0.00 0.00 3.71
2691 7360 0.461870 TCCAATGCCGTCAATCTCCG 60.462 55.000 0.00 0.00 0.00 4.63
2692 7361 0.744414 CCAATGCCGTCAATCTCCGT 60.744 55.000 0.00 0.00 0.00 4.69
2693 7362 1.086696 CAATGCCGTCAATCTCCGTT 58.913 50.000 0.00 0.00 0.00 4.44
2694 7363 1.062587 CAATGCCGTCAATCTCCGTTC 59.937 52.381 0.00 0.00 0.00 3.95
2695 7364 0.806102 ATGCCGTCAATCTCCGTTCG 60.806 55.000 0.00 0.00 0.00 3.95
2696 7365 1.153901 GCCGTCAATCTCCGTTCGA 60.154 57.895 0.00 0.00 0.00 3.71
2697 7366 0.527817 GCCGTCAATCTCCGTTCGAT 60.528 55.000 0.00 0.00 0.00 3.59
2698 7367 1.922570 CCGTCAATCTCCGTTCGATT 58.077 50.000 0.00 0.00 0.00 3.34
2699 7368 1.588404 CCGTCAATCTCCGTTCGATTG 59.412 52.381 10.53 10.53 45.63 2.67
2700 7369 1.005975 CGTCAATCTCCGTTCGATTGC 60.006 52.381 11.48 7.66 44.53 3.56
2701 7370 1.327764 GTCAATCTCCGTTCGATTGCC 59.672 52.381 11.48 0.66 44.53 4.52
2702 7371 1.066502 TCAATCTCCGTTCGATTGCCA 60.067 47.619 11.48 0.00 44.53 4.92
2703 7372 1.942657 CAATCTCCGTTCGATTGCCAT 59.057 47.619 0.00 0.00 40.65 4.40
2704 7373 1.871080 ATCTCCGTTCGATTGCCATC 58.129 50.000 0.00 0.00 0.00 3.51
2705 7374 0.534873 TCTCCGTTCGATTGCCATCA 59.465 50.000 0.00 0.00 0.00 3.07
2706 7375 1.066502 TCTCCGTTCGATTGCCATCAA 60.067 47.619 0.00 0.00 36.51 2.57
2707 7376 1.062587 CTCCGTTCGATTGCCATCAAC 59.937 52.381 0.00 1.82 34.60 3.18
2708 7377 1.086696 CCGTTCGATTGCCATCAACT 58.913 50.000 0.00 0.00 34.60 3.16
2709 7378 1.202065 CCGTTCGATTGCCATCAACTG 60.202 52.381 0.00 0.00 34.60 3.16
2710 7379 1.791555 CGTTCGATTGCCATCAACTGC 60.792 52.381 0.00 0.00 34.60 4.40
2711 7380 0.810648 TTCGATTGCCATCAACTGCC 59.189 50.000 0.00 0.00 34.60 4.85
2712 7381 1.031571 TCGATTGCCATCAACTGCCC 61.032 55.000 0.00 0.00 34.60 5.36
2713 7382 1.314534 CGATTGCCATCAACTGCCCA 61.315 55.000 0.00 0.00 34.60 5.36
2714 7383 1.117150 GATTGCCATCAACTGCCCAT 58.883 50.000 0.00 0.00 34.60 4.00
2715 7384 1.483415 GATTGCCATCAACTGCCCATT 59.517 47.619 0.00 0.00 34.60 3.16
2716 7385 1.350071 TTGCCATCAACTGCCCATTT 58.650 45.000 0.00 0.00 0.00 2.32
2717 7386 1.350071 TGCCATCAACTGCCCATTTT 58.650 45.000 0.00 0.00 0.00 1.82
2718 7387 2.533916 TGCCATCAACTGCCCATTTTA 58.466 42.857 0.00 0.00 0.00 1.52
2719 7388 3.106054 TGCCATCAACTGCCCATTTTAT 58.894 40.909 0.00 0.00 0.00 1.40
2720 7389 3.118702 TGCCATCAACTGCCCATTTTATG 60.119 43.478 0.00 0.00 0.00 1.90
2721 7390 3.460103 CCATCAACTGCCCATTTTATGC 58.540 45.455 0.00 0.00 0.00 3.14
2722 7391 3.133362 CCATCAACTGCCCATTTTATGCT 59.867 43.478 0.00 0.00 0.00 3.79
2723 7392 4.383335 CCATCAACTGCCCATTTTATGCTT 60.383 41.667 0.00 0.00 0.00 3.91
2724 7393 4.454728 TCAACTGCCCATTTTATGCTTC 57.545 40.909 0.00 0.00 0.00 3.86
2725 7394 3.119531 TCAACTGCCCATTTTATGCTTCG 60.120 43.478 0.00 0.00 0.00 3.79
2726 7395 2.446435 ACTGCCCATTTTATGCTTCGT 58.554 42.857 0.00 0.00 0.00 3.85
2727 7396 2.164219 ACTGCCCATTTTATGCTTCGTG 59.836 45.455 0.00 0.00 0.00 4.35
2728 7397 1.476085 TGCCCATTTTATGCTTCGTGG 59.524 47.619 0.00 0.00 0.00 4.94
2729 7398 2.869233 CCCATTTTATGCTTCGTGGG 57.131 50.000 0.00 0.00 40.22 4.61
2730 7399 2.099405 CCCATTTTATGCTTCGTGGGT 58.901 47.619 0.00 0.00 41.06 4.51
2731 7400 2.495669 CCCATTTTATGCTTCGTGGGTT 59.504 45.455 0.00 0.00 41.06 4.11
2732 7401 3.510719 CCATTTTATGCTTCGTGGGTTG 58.489 45.455 0.00 0.00 0.00 3.77
2733 7402 3.510719 CATTTTATGCTTCGTGGGTTGG 58.489 45.455 0.00 0.00 0.00 3.77
2734 7403 2.570415 TTTATGCTTCGTGGGTTGGA 57.430 45.000 0.00 0.00 0.00 3.53
2735 7404 2.799126 TTATGCTTCGTGGGTTGGAT 57.201 45.000 0.00 0.00 0.00 3.41
2736 7405 2.036958 TATGCTTCGTGGGTTGGATG 57.963 50.000 0.00 0.00 0.00 3.51
2737 7406 0.327924 ATGCTTCGTGGGTTGGATGA 59.672 50.000 0.00 0.00 0.00 2.92
2738 7407 0.321564 TGCTTCGTGGGTTGGATGAG 60.322 55.000 0.00 0.00 0.00 2.90
2739 7408 0.321653 GCTTCGTGGGTTGGATGAGT 60.322 55.000 0.00 0.00 0.00 3.41
2740 7409 1.442769 CTTCGTGGGTTGGATGAGTG 58.557 55.000 0.00 0.00 0.00 3.51
2741 7410 0.036164 TTCGTGGGTTGGATGAGTGG 59.964 55.000 0.00 0.00 0.00 4.00
2742 7411 2.040544 CGTGGGTTGGATGAGTGGC 61.041 63.158 0.00 0.00 0.00 5.01
2743 7412 1.074775 GTGGGTTGGATGAGTGGCA 59.925 57.895 0.00 0.00 0.00 4.92
2744 7413 1.074775 TGGGTTGGATGAGTGGCAC 59.925 57.895 10.29 10.29 0.00 5.01
2745 7414 1.380302 GGGTTGGATGAGTGGCACT 59.620 57.895 22.26 22.26 0.00 4.40
2746 7415 0.251341 GGGTTGGATGAGTGGCACTT 60.251 55.000 22.98 6.56 0.00 3.16
2747 7416 1.620822 GGTTGGATGAGTGGCACTTT 58.379 50.000 22.98 12.67 0.00 2.66
2748 7417 1.963515 GGTTGGATGAGTGGCACTTTT 59.036 47.619 22.98 12.28 0.00 2.27
2749 7418 2.029918 GGTTGGATGAGTGGCACTTTTC 60.030 50.000 22.98 19.72 0.00 2.29
2750 7419 2.887152 GTTGGATGAGTGGCACTTTTCT 59.113 45.455 22.98 6.75 0.00 2.52
2751 7420 2.507484 TGGATGAGTGGCACTTTTCTG 58.493 47.619 22.98 0.00 0.00 3.02
2752 7421 2.106338 TGGATGAGTGGCACTTTTCTGA 59.894 45.455 22.98 9.57 0.00 3.27
2753 7422 2.746362 GGATGAGTGGCACTTTTCTGAG 59.254 50.000 22.98 0.00 0.00 3.35
2754 7423 3.557898 GGATGAGTGGCACTTTTCTGAGA 60.558 47.826 22.98 0.00 0.00 3.27
2755 7424 3.117491 TGAGTGGCACTTTTCTGAGAG 57.883 47.619 22.98 0.00 0.00 3.20
2756 7425 2.700371 TGAGTGGCACTTTTCTGAGAGA 59.300 45.455 22.98 0.00 0.00 3.10
2757 7426 3.134623 TGAGTGGCACTTTTCTGAGAGAA 59.865 43.478 22.98 0.00 31.28 2.87
2758 7427 4.130118 GAGTGGCACTTTTCTGAGAGAAA 58.870 43.478 22.98 0.00 42.00 2.52
2769 7438 7.645058 TTTTCTGAGAGAAAATTTGGAGTGT 57.355 32.000 7.29 0.00 45.99 3.55
2770 7439 7.645058 TTTCTGAGAGAAAATTTGGAGTGTT 57.355 32.000 0.00 0.00 40.89 3.32
2771 7440 6.867662 TCTGAGAGAAAATTTGGAGTGTTC 57.132 37.500 0.00 0.00 0.00 3.18
2772 7441 6.595682 TCTGAGAGAAAATTTGGAGTGTTCT 58.404 36.000 0.00 0.00 0.00 3.01
2773 7442 6.708054 TCTGAGAGAAAATTTGGAGTGTTCTC 59.292 38.462 5.90 5.90 42.89 2.87
2786 7455 4.950050 GAGTGTTCTCCTTGTTTGAGAGA 58.050 43.478 0.00 0.00 39.84 3.10
2787 7456 5.359194 AGTGTTCTCCTTGTTTGAGAGAA 57.641 39.130 0.00 0.00 42.75 2.87
2788 7457 5.745227 AGTGTTCTCCTTGTTTGAGAGAAA 58.255 37.500 3.43 0.00 45.52 2.52
2789 7458 6.180472 AGTGTTCTCCTTGTTTGAGAGAAAA 58.820 36.000 3.43 0.00 45.52 2.29
2790 7459 6.830838 AGTGTTCTCCTTGTTTGAGAGAAAAT 59.169 34.615 3.43 0.00 45.52 1.82
2791 7460 7.340487 AGTGTTCTCCTTGTTTGAGAGAAAATT 59.660 33.333 3.43 0.00 45.52 1.82
2792 7461 7.976175 GTGTTCTCCTTGTTTGAGAGAAAATTT 59.024 33.333 3.43 0.00 45.52 1.82
2793 7462 7.975616 TGTTCTCCTTGTTTGAGAGAAAATTTG 59.024 33.333 3.43 0.00 45.52 2.32
2794 7463 7.042797 TCTCCTTGTTTGAGAGAAAATTTGG 57.957 36.000 0.00 0.00 34.03 3.28
2795 7464 6.833416 TCTCCTTGTTTGAGAGAAAATTTGGA 59.167 34.615 0.00 0.00 34.03 3.53
2796 7465 7.013655 TCTCCTTGTTTGAGAGAAAATTTGGAG 59.986 37.037 0.00 0.00 34.03 3.86
2797 7466 5.693555 CCTTGTTTGAGAGAAAATTTGGAGC 59.306 40.000 0.00 0.00 0.00 4.70
2798 7467 5.850557 TGTTTGAGAGAAAATTTGGAGCA 57.149 34.783 0.00 0.00 0.00 4.26
2799 7468 6.409524 TGTTTGAGAGAAAATTTGGAGCAT 57.590 33.333 0.00 0.00 0.00 3.79
2800 7469 6.819284 TGTTTGAGAGAAAATTTGGAGCATT 58.181 32.000 0.00 0.00 0.00 3.56
2801 7470 6.925165 TGTTTGAGAGAAAATTTGGAGCATTC 59.075 34.615 0.00 0.00 0.00 2.67
2802 7471 6.906157 TTGAGAGAAAATTTGGAGCATTCT 57.094 33.333 0.00 0.00 33.28 2.40
2803 7472 6.506500 TGAGAGAAAATTTGGAGCATTCTC 57.493 37.500 5.85 5.85 43.92 2.87
2848 7517 9.613428 TTAATCAAACTTATGCACTATGCTAGT 57.387 29.630 2.02 0.93 45.31 2.57
2850 7519 9.784531 AATCAAACTTATGCACTATGCTAGTAT 57.215 29.630 2.02 0.00 45.31 2.12
2851 7520 9.784531 ATCAAACTTATGCACTATGCTAGTATT 57.215 29.630 0.00 0.00 45.31 1.89
2852 7521 9.261180 TCAAACTTATGCACTATGCTAGTATTC 57.739 33.333 0.00 0.00 45.31 1.75
2853 7522 9.045223 CAAACTTATGCACTATGCTAGTATTCA 57.955 33.333 0.00 0.00 45.31 2.57
2854 7523 8.594881 AACTTATGCACTATGCTAGTATTCAC 57.405 34.615 0.00 0.00 45.31 3.18
2855 7524 7.726216 ACTTATGCACTATGCTAGTATTCACA 58.274 34.615 0.00 0.00 45.31 3.58
2856 7525 7.653713 ACTTATGCACTATGCTAGTATTCACAC 59.346 37.037 0.00 0.00 45.31 3.82
2857 7526 5.598416 TGCACTATGCTAGTATTCACACT 57.402 39.130 0.00 0.00 45.31 3.55
2858 7527 5.977635 TGCACTATGCTAGTATTCACACTT 58.022 37.500 0.00 0.00 45.31 3.16
2859 7528 6.042777 TGCACTATGCTAGTATTCACACTTC 58.957 40.000 0.00 0.00 45.31 3.01
2860 7529 6.042777 GCACTATGCTAGTATTCACACTTCA 58.957 40.000 0.00 0.00 40.96 3.02
2861 7530 6.703607 GCACTATGCTAGTATTCACACTTCAT 59.296 38.462 0.00 0.00 40.96 2.57
2862 7531 7.867909 GCACTATGCTAGTATTCACACTTCATA 59.132 37.037 0.00 0.00 40.96 2.15
2863 7532 9.750125 CACTATGCTAGTATTCACACTTCATAA 57.250 33.333 0.00 0.00 37.23 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 149 2.806745 CGTGCCCTCTCTGACTTTTTCA 60.807 50.000 0.00 0.00 0.00 2.69
216 217 1.063811 GGCCTAGTCGTGAGCGTAC 59.936 63.158 0.00 0.00 39.49 3.67
224 225 2.348888 CCAACCTCGGCCTAGTCGT 61.349 63.158 0.00 0.00 30.45 4.34
340 374 2.535984 GTGATGCTTCTCCGTATCGTTG 59.464 50.000 0.88 0.00 0.00 4.10
341 375 2.481449 GGTGATGCTTCTCCGTATCGTT 60.481 50.000 5.09 0.00 0.00 3.85
486 4703 2.042930 ATCTTCCCCGGCTTCCCT 59.957 61.111 0.00 0.00 0.00 4.20
514 4731 2.665000 GCTGCTGTGACCTAGCCA 59.335 61.111 0.00 0.00 40.42 4.75
672 4889 8.862325 ATCTTGTTTGGTGAGTACATTCATTA 57.138 30.769 0.00 0.00 0.00 1.90
674 4891 7.765695 AATCTTGTTTGGTGAGTACATTCAT 57.234 32.000 0.00 0.00 0.00 2.57
734 4952 2.884639 CCGACAAAACATGAACCCTTCT 59.115 45.455 0.00 0.00 0.00 2.85
735 4953 2.882137 TCCGACAAAACATGAACCCTTC 59.118 45.455 0.00 0.00 0.00 3.46
736 4954 2.938838 TCCGACAAAACATGAACCCTT 58.061 42.857 0.00 0.00 0.00 3.95
737 4955 2.649531 TCCGACAAAACATGAACCCT 57.350 45.000 0.00 0.00 0.00 4.34
738 4956 3.719173 TTTCCGACAAAACATGAACCC 57.281 42.857 0.00 0.00 0.00 4.11
761 4979 6.095720 TCGAAAGTACATGAACCCTTGTTTTT 59.904 34.615 0.00 0.00 33.97 1.94
762 4980 5.591067 TCGAAAGTACATGAACCCTTGTTTT 59.409 36.000 0.00 0.00 33.97 2.43
763 4981 5.127491 TCGAAAGTACATGAACCCTTGTTT 58.873 37.500 0.00 0.00 33.97 2.83
764 4982 4.710324 TCGAAAGTACATGAACCCTTGTT 58.290 39.130 0.00 0.00 37.42 2.83
861 5081 2.677228 GTGGCCATGGTAGCTGGT 59.323 61.111 9.72 0.00 36.10 4.00
862 5082 2.124151 GGTGGCCATGGTAGCTGG 60.124 66.667 9.72 6.17 36.81 4.85
863 5083 1.750399 GTGGTGGCCATGGTAGCTG 60.750 63.158 9.72 0.00 35.28 4.24
864 5084 2.677228 GTGGTGGCCATGGTAGCT 59.323 61.111 9.72 0.00 35.28 3.32
865 5085 2.440247 GGTGGTGGCCATGGTAGC 60.440 66.667 9.72 12.96 35.28 3.58
866 5086 2.275418 GGGTGGTGGCCATGGTAG 59.725 66.667 9.72 0.00 35.28 3.18
867 5087 3.343326 GGGGTGGTGGCCATGGTA 61.343 66.667 9.72 0.00 35.28 3.25
966 5190 1.021390 CGAGGTAAAGGCACCAGCTG 61.021 60.000 6.78 6.78 41.40 4.24
1054 5278 4.020617 CGCCACCAGGAGCAGGAA 62.021 66.667 0.00 0.00 36.89 3.36
1317 5541 2.359107 CCGCTGCTCTTGAAGGCA 60.359 61.111 7.84 7.84 36.94 4.75
1394 5618 4.847516 CCTCGAACGCGATCGGCA 62.848 66.667 33.30 17.73 46.80 5.69
1576 5800 2.962569 CACGAGACTGCCCTTCGA 59.037 61.111 0.00 0.00 0.00 3.71
1657 5881 3.884693 GTCTCTAGGTTACCAGTAGCCTC 59.115 52.174 15.53 0.00 42.09 4.70
1742 5966 2.772691 CCCGTCTCTAGGTCACCGC 61.773 68.421 0.00 0.00 0.00 5.68
1743 5967 0.679002 TTCCCGTCTCTAGGTCACCG 60.679 60.000 0.00 0.00 0.00 4.94
1891 6115 7.113404 CACGTTCTCCAGTTGACAAATTTAATG 59.887 37.037 0.00 0.00 0.00 1.90
1907 6131 2.040813 ACTACCCTAGACACGTTCTCCA 59.959 50.000 3.94 0.00 35.55 3.86
1938 6162 1.024271 GTTGCACAGTGCTCAAGGAA 58.976 50.000 25.83 8.31 45.31 3.36
1940 6164 1.656441 GGTTGCACAGTGCTCAAGG 59.344 57.895 25.83 0.00 45.31 3.61
1967 6191 3.502123 ACTTTCATTTCAACCCGGAGA 57.498 42.857 0.73 0.00 0.00 3.71
1968 6192 4.202111 ACAAACTTTCATTTCAACCCGGAG 60.202 41.667 0.73 0.00 0.00 4.63
1970 6194 4.053469 ACAAACTTTCATTTCAACCCGG 57.947 40.909 0.00 0.00 0.00 5.73
2014 6247 6.047870 CCAAACTCAAAATGACCATGAAACA 58.952 36.000 0.00 0.00 0.00 2.83
2025 6258 5.636965 TGACAAACACACCAAACTCAAAATG 59.363 36.000 0.00 0.00 0.00 2.32
2026 6259 5.788450 TGACAAACACACCAAACTCAAAAT 58.212 33.333 0.00 0.00 0.00 1.82
2027 6260 5.201713 TGACAAACACACCAAACTCAAAA 57.798 34.783 0.00 0.00 0.00 2.44
2028 6261 4.855715 TGACAAACACACCAAACTCAAA 57.144 36.364 0.00 0.00 0.00 2.69
2029 6262 4.551388 GTTGACAAACACACCAAACTCAA 58.449 39.130 0.00 0.00 36.24 3.02
2030 6263 3.365465 CGTTGACAAACACACCAAACTCA 60.365 43.478 0.00 0.00 35.94 3.41
2031 6264 3.168193 CGTTGACAAACACACCAAACTC 58.832 45.455 0.00 0.00 35.94 3.01
2032 6265 2.554893 ACGTTGACAAACACACCAAACT 59.445 40.909 0.00 0.00 35.94 2.66
2033 6266 2.659279 CACGTTGACAAACACACCAAAC 59.341 45.455 0.00 0.00 35.94 2.93
2051 6284 5.966636 TCGAACTCATCCAATAAATCACG 57.033 39.130 0.00 0.00 0.00 4.35
2055 6288 7.396540 AAAGCTTCGAACTCATCCAATAAAT 57.603 32.000 0.00 0.00 0.00 1.40
2056 6289 6.817765 AAAGCTTCGAACTCATCCAATAAA 57.182 33.333 0.00 0.00 0.00 1.40
2082 6315 7.167302 CAGTTCGTGTAGAATTGAATGCAAAAA 59.833 33.333 0.00 0.00 45.87 1.94
2277 6931 1.004560 CGGCTGGCTCTGTTCTTCA 60.005 57.895 0.00 0.00 0.00 3.02
2320 6989 8.564574 TGCTCGTAATACACTTCATTTTCTTTT 58.435 29.630 0.00 0.00 0.00 2.27
2341 7010 4.202101 ACTCATCTGGATTAGAAGTGCTCG 60.202 45.833 0.00 0.00 39.30 5.03
2436 7105 6.204688 TGTCCTTCACATGAACTATTGTGAAC 59.795 38.462 12.92 6.83 43.57 3.18
2456 7125 9.884636 AGCAAACTAAAACTTTATTTTTGTCCT 57.115 25.926 13.03 5.46 33.00 3.85
2480 7149 4.985044 TCGCCTCGCTTATAAATAAAGC 57.015 40.909 0.00 0.00 44.72 3.51
2481 7150 5.846473 GCTTTCGCCTCGCTTATAAATAAAG 59.154 40.000 0.00 0.00 0.00 1.85
2482 7151 5.744490 GCTTTCGCCTCGCTTATAAATAAA 58.256 37.500 0.00 0.00 0.00 1.40
2483 7152 5.338614 GCTTTCGCCTCGCTTATAAATAA 57.661 39.130 0.00 0.00 0.00 1.40
2484 7153 4.985044 GCTTTCGCCTCGCTTATAAATA 57.015 40.909 0.00 0.00 0.00 1.40
2485 7154 3.879932 GCTTTCGCCTCGCTTATAAAT 57.120 42.857 0.00 0.00 0.00 1.40
2500 7169 4.364860 GTCCTCTCTCGAAATAGGCTTTC 58.635 47.826 0.00 0.00 0.00 2.62
2501 7170 3.133183 GGTCCTCTCTCGAAATAGGCTTT 59.867 47.826 0.00 0.00 0.00 3.51
2502 7171 2.696187 GGTCCTCTCTCGAAATAGGCTT 59.304 50.000 0.00 0.00 0.00 4.35
2503 7172 2.312390 GGTCCTCTCTCGAAATAGGCT 58.688 52.381 0.00 0.00 0.00 4.58
2504 7173 2.032620 TGGTCCTCTCTCGAAATAGGC 58.967 52.381 2.45 0.00 0.00 3.93
2505 7174 4.737855 TTTGGTCCTCTCTCGAAATAGG 57.262 45.455 1.10 1.10 0.00 2.57
2506 7175 8.718102 TTTATTTTGGTCCTCTCTCGAAATAG 57.282 34.615 0.00 0.00 31.98 1.73
2507 7176 9.681062 ATTTTATTTTGGTCCTCTCTCGAAATA 57.319 29.630 0.00 0.00 0.00 1.40
2508 7177 7.996098 TTTTATTTTGGTCCTCTCTCGAAAT 57.004 32.000 0.00 0.00 0.00 2.17
2509 7178 7.996098 ATTTTATTTTGGTCCTCTCTCGAAA 57.004 32.000 0.00 0.00 0.00 3.46
2510 7179 7.996098 AATTTTATTTTGGTCCTCTCTCGAA 57.004 32.000 0.00 0.00 0.00 3.71
2511 7180 9.681062 ATTAATTTTATTTTGGTCCTCTCTCGA 57.319 29.630 0.00 0.00 0.00 4.04
2512 7181 9.937175 GATTAATTTTATTTTGGTCCTCTCTCG 57.063 33.333 0.00 0.00 0.00 4.04
2545 7214 9.850198 TCATTCATGTTGATATCCACATTCTTA 57.150 29.630 17.47 6.22 0.00 2.10
2546 7215 8.756486 TCATTCATGTTGATATCCACATTCTT 57.244 30.769 17.47 5.03 0.00 2.52
2547 7216 8.935614 ATCATTCATGTTGATATCCACATTCT 57.064 30.769 17.47 5.18 32.13 2.40
2550 7219 9.577222 TGTTATCATTCATGTTGATATCCACAT 57.423 29.630 14.98 14.98 36.30 3.21
2551 7220 8.977267 TGTTATCATTCATGTTGATATCCACA 57.023 30.769 11.69 11.69 36.30 4.17
2566 7235 9.823098 GCTCATGATCACTAATTGTTATCATTC 57.177 33.333 0.00 5.18 43.55 2.67
2567 7236 9.346005 TGCTCATGATCACTAATTGTTATCATT 57.654 29.630 0.00 0.00 43.55 2.57
2568 7237 8.781196 GTGCTCATGATCACTAATTGTTATCAT 58.219 33.333 19.90 9.80 45.61 2.45
2569 7238 7.769970 TGTGCTCATGATCACTAATTGTTATCA 59.230 33.333 25.44 3.26 41.69 2.15
2570 7239 8.146479 TGTGCTCATGATCACTAATTGTTATC 57.854 34.615 25.44 0.88 34.49 1.75
2571 7240 7.772292 ACTGTGCTCATGATCACTAATTGTTAT 59.228 33.333 25.44 3.40 34.49 1.89
2572 7241 7.105588 ACTGTGCTCATGATCACTAATTGTTA 58.894 34.615 25.44 6.58 34.49 2.41
2573 7242 5.942236 ACTGTGCTCATGATCACTAATTGTT 59.058 36.000 25.44 4.51 34.49 2.83
2574 7243 5.494724 ACTGTGCTCATGATCACTAATTGT 58.505 37.500 25.44 15.09 34.49 2.71
2575 7244 6.432607 AACTGTGCTCATGATCACTAATTG 57.567 37.500 25.44 14.61 34.49 2.32
2576 7245 7.458409 AAAACTGTGCTCATGATCACTAATT 57.542 32.000 25.44 15.82 34.49 1.40
2577 7246 8.565896 TTAAAACTGTGCTCATGATCACTAAT 57.434 30.769 25.44 11.63 34.49 1.73
2578 7247 7.977789 TTAAAACTGTGCTCATGATCACTAA 57.022 32.000 25.44 14.76 34.49 2.24
2579 7248 8.565896 AATTAAAACTGTGCTCATGATCACTA 57.434 30.769 25.44 13.81 34.49 2.74
2580 7249 7.458409 AATTAAAACTGTGCTCATGATCACT 57.542 32.000 25.44 11.23 34.49 3.41
2581 7250 6.467047 CGAATTAAAACTGTGCTCATGATCAC 59.533 38.462 20.27 20.27 0.00 3.06
2582 7251 6.149308 ACGAATTAAAACTGTGCTCATGATCA 59.851 34.615 0.00 0.00 0.00 2.92
2583 7252 6.546395 ACGAATTAAAACTGTGCTCATGATC 58.454 36.000 0.00 0.00 0.00 2.92
2584 7253 6.372659 AGACGAATTAAAACTGTGCTCATGAT 59.627 34.615 0.00 0.00 0.00 2.45
2585 7254 5.700832 AGACGAATTAAAACTGTGCTCATGA 59.299 36.000 0.00 0.00 0.00 3.07
2586 7255 5.931532 AGACGAATTAAAACTGTGCTCATG 58.068 37.500 0.00 0.00 0.00 3.07
2587 7256 6.874134 AGTAGACGAATTAAAACTGTGCTCAT 59.126 34.615 0.00 0.00 0.00 2.90
2588 7257 6.220930 AGTAGACGAATTAAAACTGTGCTCA 58.779 36.000 0.00 0.00 0.00 4.26
2589 7258 6.707599 AGTAGACGAATTAAAACTGTGCTC 57.292 37.500 0.00 0.00 0.00 4.26
2590 7259 9.865321 TTATAGTAGACGAATTAAAACTGTGCT 57.135 29.630 0.00 0.00 0.00 4.40
2603 7272 9.736414 AGATTAGCATACCTTATAGTAGACGAA 57.264 33.333 0.00 0.00 0.00 3.85
2604 7273 9.736414 AAGATTAGCATACCTTATAGTAGACGA 57.264 33.333 0.00 0.00 0.00 4.20
2605 7274 9.776158 CAAGATTAGCATACCTTATAGTAGACG 57.224 37.037 0.00 0.00 0.00 4.18
2606 7275 9.575783 GCAAGATTAGCATACCTTATAGTAGAC 57.424 37.037 0.00 0.00 0.00 2.59
2607 7276 9.535170 AGCAAGATTAGCATACCTTATAGTAGA 57.465 33.333 0.00 0.00 0.00 2.59
2608 7277 9.579768 CAGCAAGATTAGCATACCTTATAGTAG 57.420 37.037 0.00 0.00 0.00 2.57
2609 7278 9.309224 TCAGCAAGATTAGCATACCTTATAGTA 57.691 33.333 0.00 0.00 0.00 1.82
2610 7279 8.195165 TCAGCAAGATTAGCATACCTTATAGT 57.805 34.615 0.00 0.00 0.00 2.12
2611 7280 8.526978 TCTCAGCAAGATTAGCATACCTTATAG 58.473 37.037 0.00 0.00 0.00 1.31
2612 7281 8.422577 TCTCAGCAAGATTAGCATACCTTATA 57.577 34.615 0.00 0.00 0.00 0.98
2613 7282 7.308450 TCTCAGCAAGATTAGCATACCTTAT 57.692 36.000 0.00 0.00 0.00 1.73
2614 7283 6.731292 TCTCAGCAAGATTAGCATACCTTA 57.269 37.500 0.00 0.00 0.00 2.69
2615 7284 5.620738 TCTCAGCAAGATTAGCATACCTT 57.379 39.130 0.00 0.00 0.00 3.50
2616 7285 5.104776 TGTTCTCAGCAAGATTAGCATACCT 60.105 40.000 0.00 0.00 32.82 3.08
2617 7286 5.118990 TGTTCTCAGCAAGATTAGCATACC 58.881 41.667 0.00 0.00 32.82 2.73
2618 7287 6.668541 TTGTTCTCAGCAAGATTAGCATAC 57.331 37.500 0.00 0.00 32.82 2.39
2619 7288 7.870509 AATTGTTCTCAGCAAGATTAGCATA 57.129 32.000 0.00 0.00 32.82 3.14
2620 7289 6.770746 AATTGTTCTCAGCAAGATTAGCAT 57.229 33.333 0.00 0.00 32.82 3.79
2621 7290 6.579666 AAATTGTTCTCAGCAAGATTAGCA 57.420 33.333 0.00 0.00 32.82 3.49
2622 7291 7.880059 AAAAATTGTTCTCAGCAAGATTAGC 57.120 32.000 0.00 0.00 32.82 3.09
2643 7312 9.144298 TCCCAAAACTACACATATTACCAAAAA 57.856 29.630 0.00 0.00 0.00 1.94
2644 7313 8.707796 TCCCAAAACTACACATATTACCAAAA 57.292 30.769 0.00 0.00 0.00 2.44
2645 7314 8.744652 CATCCCAAAACTACACATATTACCAAA 58.255 33.333 0.00 0.00 0.00 3.28
2646 7315 7.891183 ACATCCCAAAACTACACATATTACCAA 59.109 33.333 0.00 0.00 0.00 3.67
2647 7316 7.406916 ACATCCCAAAACTACACATATTACCA 58.593 34.615 0.00 0.00 0.00 3.25
2648 7317 7.012989 GGACATCCCAAAACTACACATATTACC 59.987 40.741 0.00 0.00 34.14 2.85
2649 7318 7.554835 TGGACATCCCAAAACTACACATATTAC 59.445 37.037 0.00 0.00 43.29 1.89
2650 7319 7.634718 TGGACATCCCAAAACTACACATATTA 58.365 34.615 0.00 0.00 43.29 0.98
2651 7320 6.489603 TGGACATCCCAAAACTACACATATT 58.510 36.000 0.00 0.00 43.29 1.28
2652 7321 6.073447 TGGACATCCCAAAACTACACATAT 57.927 37.500 0.00 0.00 43.29 1.78
2653 7322 5.506730 TGGACATCCCAAAACTACACATA 57.493 39.130 0.00 0.00 43.29 2.29
2654 7323 4.380843 TGGACATCCCAAAACTACACAT 57.619 40.909 0.00 0.00 43.29 3.21
2655 7324 3.866703 TGGACATCCCAAAACTACACA 57.133 42.857 0.00 0.00 43.29 3.72
2665 7334 1.077787 GACGGCATTGGACATCCCA 60.078 57.895 0.00 0.00 44.93 4.37
2666 7335 0.679640 TTGACGGCATTGGACATCCC 60.680 55.000 0.00 0.00 34.29 3.85
2667 7336 1.334869 GATTGACGGCATTGGACATCC 59.665 52.381 0.00 0.00 0.00 3.51
2668 7337 2.289002 GAGATTGACGGCATTGGACATC 59.711 50.000 0.00 0.00 0.00 3.06
2669 7338 2.292267 GAGATTGACGGCATTGGACAT 58.708 47.619 0.00 0.00 0.00 3.06
2670 7339 1.678728 GGAGATTGACGGCATTGGACA 60.679 52.381 0.00 0.00 0.00 4.02
2671 7340 1.017387 GGAGATTGACGGCATTGGAC 58.983 55.000 0.00 0.00 0.00 4.02
2672 7341 0.461870 CGGAGATTGACGGCATTGGA 60.462 55.000 0.00 0.00 0.00 3.53
2673 7342 0.744414 ACGGAGATTGACGGCATTGG 60.744 55.000 0.00 0.00 0.00 3.16
2674 7343 1.062587 GAACGGAGATTGACGGCATTG 59.937 52.381 0.00 0.00 0.00 2.82
2675 7344 1.369625 GAACGGAGATTGACGGCATT 58.630 50.000 0.00 0.00 0.00 3.56
2676 7345 0.806102 CGAACGGAGATTGACGGCAT 60.806 55.000 0.00 0.00 0.00 4.40
2677 7346 1.445410 CGAACGGAGATTGACGGCA 60.445 57.895 0.00 0.00 0.00 5.69
2678 7347 0.527817 ATCGAACGGAGATTGACGGC 60.528 55.000 0.00 0.00 0.00 5.68
2679 7348 1.922570 AATCGAACGGAGATTGACGG 58.077 50.000 0.00 0.00 37.00 4.79
2684 7353 2.213499 GATGGCAATCGAACGGAGATT 58.787 47.619 0.00 0.00 38.72 2.40
2685 7354 1.138859 TGATGGCAATCGAACGGAGAT 59.861 47.619 0.00 0.00 35.37 2.75
2686 7355 0.534873 TGATGGCAATCGAACGGAGA 59.465 50.000 0.00 0.00 35.37 3.71
2687 7356 1.062587 GTTGATGGCAATCGAACGGAG 59.937 52.381 0.00 0.00 36.22 4.63
2688 7357 1.083489 GTTGATGGCAATCGAACGGA 58.917 50.000 0.00 0.00 36.22 4.69
2689 7358 1.086696 AGTTGATGGCAATCGAACGG 58.913 50.000 0.00 0.00 36.22 4.44
2690 7359 1.791555 GCAGTTGATGGCAATCGAACG 60.792 52.381 0.00 0.00 36.22 3.95
2691 7360 1.900237 GCAGTTGATGGCAATCGAAC 58.100 50.000 0.00 0.86 36.22 3.95
2700 7369 3.133362 AGCATAAAATGGGCAGTTGATGG 59.867 43.478 0.00 0.00 30.11 3.51
2701 7370 4.395959 AGCATAAAATGGGCAGTTGATG 57.604 40.909 0.00 0.00 32.02 3.07
2702 7371 4.440525 CGAAGCATAAAATGGGCAGTTGAT 60.441 41.667 0.00 0.00 0.00 2.57
2703 7372 3.119531 CGAAGCATAAAATGGGCAGTTGA 60.120 43.478 0.00 0.00 0.00 3.18
2704 7373 3.181397 CGAAGCATAAAATGGGCAGTTG 58.819 45.455 0.00 0.00 0.00 3.16
2705 7374 2.825532 ACGAAGCATAAAATGGGCAGTT 59.174 40.909 0.00 0.00 0.00 3.16
2706 7375 2.164219 CACGAAGCATAAAATGGGCAGT 59.836 45.455 0.00 0.00 0.00 4.40
2707 7376 2.480073 CCACGAAGCATAAAATGGGCAG 60.480 50.000 0.00 0.00 0.00 4.85
2708 7377 1.476085 CCACGAAGCATAAAATGGGCA 59.524 47.619 0.00 0.00 0.00 5.36
2709 7378 1.202405 CCCACGAAGCATAAAATGGGC 60.202 52.381 0.00 0.00 40.40 5.36
2710 7379 2.869233 CCCACGAAGCATAAAATGGG 57.131 50.000 0.00 0.00 40.87 4.00
2711 7380 3.510719 CAACCCACGAAGCATAAAATGG 58.489 45.455 0.00 0.00 0.00 3.16
2712 7381 3.192422 TCCAACCCACGAAGCATAAAATG 59.808 43.478 0.00 0.00 0.00 2.32
2713 7382 3.426615 TCCAACCCACGAAGCATAAAAT 58.573 40.909 0.00 0.00 0.00 1.82
2714 7383 2.865079 TCCAACCCACGAAGCATAAAA 58.135 42.857 0.00 0.00 0.00 1.52
2715 7384 2.570415 TCCAACCCACGAAGCATAAA 57.430 45.000 0.00 0.00 0.00 1.40
2716 7385 2.026729 TCATCCAACCCACGAAGCATAA 60.027 45.455 0.00 0.00 0.00 1.90
2717 7386 1.557371 TCATCCAACCCACGAAGCATA 59.443 47.619 0.00 0.00 0.00 3.14
2718 7387 0.327924 TCATCCAACCCACGAAGCAT 59.672 50.000 0.00 0.00 0.00 3.79
2719 7388 0.321564 CTCATCCAACCCACGAAGCA 60.322 55.000 0.00 0.00 0.00 3.91
2720 7389 0.321653 ACTCATCCAACCCACGAAGC 60.322 55.000 0.00 0.00 0.00 3.86
2721 7390 1.442769 CACTCATCCAACCCACGAAG 58.557 55.000 0.00 0.00 0.00 3.79
2722 7391 0.036164 CCACTCATCCAACCCACGAA 59.964 55.000 0.00 0.00 0.00 3.85
2723 7392 1.676968 CCACTCATCCAACCCACGA 59.323 57.895 0.00 0.00 0.00 4.35
2724 7393 2.040544 GCCACTCATCCAACCCACG 61.041 63.158 0.00 0.00 0.00 4.94
2725 7394 1.074775 TGCCACTCATCCAACCCAC 59.925 57.895 0.00 0.00 0.00 4.61
2726 7395 1.074775 GTGCCACTCATCCAACCCA 59.925 57.895 0.00 0.00 0.00 4.51
2727 7396 0.251341 AAGTGCCACTCATCCAACCC 60.251 55.000 0.00 0.00 0.00 4.11
2728 7397 1.620822 AAAGTGCCACTCATCCAACC 58.379 50.000 0.00 0.00 0.00 3.77
2729 7398 2.887152 AGAAAAGTGCCACTCATCCAAC 59.113 45.455 0.00 0.00 0.00 3.77
2730 7399 2.886523 CAGAAAAGTGCCACTCATCCAA 59.113 45.455 0.00 0.00 0.00 3.53
2731 7400 2.106338 TCAGAAAAGTGCCACTCATCCA 59.894 45.455 0.00 0.00 0.00 3.41
2732 7401 2.746362 CTCAGAAAAGTGCCACTCATCC 59.254 50.000 0.00 0.00 0.00 3.51
2733 7402 3.668447 TCTCAGAAAAGTGCCACTCATC 58.332 45.455 0.00 0.00 0.00 2.92
2734 7403 3.326006 TCTCTCAGAAAAGTGCCACTCAT 59.674 43.478 0.00 0.00 0.00 2.90
2735 7404 2.700371 TCTCTCAGAAAAGTGCCACTCA 59.300 45.455 0.00 0.00 0.00 3.41
2736 7405 3.393089 TCTCTCAGAAAAGTGCCACTC 57.607 47.619 0.00 0.00 0.00 3.51
2737 7406 3.845781 TTCTCTCAGAAAAGTGCCACT 57.154 42.857 0.00 0.00 29.99 4.00
2738 7407 4.900635 TTTTCTCTCAGAAAAGTGCCAC 57.099 40.909 7.24 0.00 45.99 5.01
2746 7415 7.557719 AGAACACTCCAAATTTTCTCTCAGAAA 59.442 33.333 0.00 0.00 42.00 2.52
2747 7416 7.056635 AGAACACTCCAAATTTTCTCTCAGAA 58.943 34.615 0.00 0.00 31.28 3.02
2748 7417 6.595682 AGAACACTCCAAATTTTCTCTCAGA 58.404 36.000 0.00 0.00 0.00 3.27
2749 7418 6.072783 GGAGAACACTCCAAATTTTCTCTCAG 60.073 42.308 10.86 0.00 46.67 3.35
2750 7419 5.765182 GGAGAACACTCCAAATTTTCTCTCA 59.235 40.000 10.86 0.00 46.67 3.27
2751 7420 6.247727 GGAGAACACTCCAAATTTTCTCTC 57.752 41.667 10.86 5.56 46.67 3.20
2764 7433 4.950050 TCTCTCAAACAAGGAGAACACTC 58.050 43.478 0.00 0.00 40.64 3.51
2765 7434 5.359194 TTCTCTCAAACAAGGAGAACACT 57.641 39.130 0.00 0.00 40.64 3.55
2766 7435 6.436843 TTTTCTCTCAAACAAGGAGAACAC 57.563 37.500 0.00 0.00 43.10 3.32
2767 7436 7.645058 AATTTTCTCTCAAACAAGGAGAACA 57.355 32.000 0.00 0.00 43.10 3.18
2768 7437 7.436376 CCAAATTTTCTCTCAAACAAGGAGAAC 59.564 37.037 0.00 0.00 43.10 3.01
2769 7438 7.341769 TCCAAATTTTCTCTCAAACAAGGAGAA 59.658 33.333 0.00 0.00 40.64 2.87
2770 7439 6.833416 TCCAAATTTTCTCTCAAACAAGGAGA 59.167 34.615 0.00 0.00 39.01 3.71
2771 7440 7.042797 TCCAAATTTTCTCTCAAACAAGGAG 57.957 36.000 0.00 0.00 0.00 3.69
2772 7441 6.461509 GCTCCAAATTTTCTCTCAAACAAGGA 60.462 38.462 0.00 0.00 0.00 3.36
2773 7442 5.693555 GCTCCAAATTTTCTCTCAAACAAGG 59.306 40.000 0.00 0.00 0.00 3.61
2774 7443 6.275335 TGCTCCAAATTTTCTCTCAAACAAG 58.725 36.000 0.00 0.00 0.00 3.16
2775 7444 6.219417 TGCTCCAAATTTTCTCTCAAACAA 57.781 33.333 0.00 0.00 0.00 2.83
2776 7445 5.850557 TGCTCCAAATTTTCTCTCAAACA 57.149 34.783 0.00 0.00 0.00 2.83
2777 7446 7.150640 AGAATGCTCCAAATTTTCTCTCAAAC 58.849 34.615 0.00 0.00 0.00 2.93
2778 7447 7.294017 AGAATGCTCCAAATTTTCTCTCAAA 57.706 32.000 0.00 0.00 0.00 2.69
2779 7448 6.906157 AGAATGCTCCAAATTTTCTCTCAA 57.094 33.333 0.00 0.00 0.00 3.02
2780 7449 6.506500 GAGAATGCTCCAAATTTTCTCTCA 57.493 37.500 6.56 0.00 39.32 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.