Multiple sequence alignment - TraesCS5D01G285900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G285900 chr5D 100.000 2795 0 0 1 2795 386208788 386211582 0.000000e+00 5162.0
1 TraesCS5D01G285900 chr5D 95.938 517 20 1 2273 2788 30613914 30614430 0.000000e+00 837.0
2 TraesCS5D01G285900 chr5D 95.029 523 25 1 2273 2794 504512970 504512448 0.000000e+00 821.0
3 TraesCS5D01G285900 chr5D 86.191 659 75 11 1001 1645 386512909 386513565 0.000000e+00 699.0
4 TraesCS5D01G285900 chr5D 86.342 637 65 13 1001 1620 386589496 386590127 0.000000e+00 675.0
5 TraesCS5D01G285900 chr5D 94.030 67 4 0 503 569 223302745 223302679 4.930000e-18 102.0
6 TraesCS5D01G285900 chr5D 91.429 70 5 1 500 568 63616059 63615990 8.240000e-16 95.3
7 TraesCS5D01G285900 chr5B 95.825 1581 47 14 596 2170 464144136 464145703 0.000000e+00 2536.0
8 TraesCS5D01G285900 chr5B 95.602 523 22 1 2273 2794 26946486 26947008 0.000000e+00 837.0
9 TraesCS5D01G285900 chr5B 95.256 527 23 2 2270 2794 10171056 10171582 0.000000e+00 833.0
10 TraesCS5D01G285900 chr5B 86.343 659 74 11 1001 1645 464171030 464171686 0.000000e+00 704.0
11 TraesCS5D01G285900 chr5B 86.460 613 69 8 1021 1620 464195332 464195943 0.000000e+00 660.0
12 TraesCS5D01G285900 chr5B 90.789 76 7 0 2198 2273 464145705 464145780 4.930000e-18 102.0
13 TraesCS5D01G285900 chr5A 94.376 1458 56 11 595 2044 488038062 488039501 0.000000e+00 2215.0
14 TraesCS5D01G285900 chr5A 87.244 635 62 11 1001 1620 488050954 488051584 0.000000e+00 706.0
15 TraesCS5D01G285900 chr5A 86.531 490 48 5 1162 1645 488047430 488047907 8.870000e-145 523.0
16 TraesCS5D01G285900 chr5A 95.122 246 10 1 347 592 488032114 488032357 1.210000e-103 387.0
17 TraesCS5D01G285900 chr5A 97.794 136 2 1 2035 2170 488039840 488039974 1.670000e-57 233.0
18 TraesCS5D01G285900 chr5A 94.737 76 4 0 2198 2273 488039976 488040051 4.890000e-23 119.0
19 TraesCS5D01G285900 chr3D 95.594 522 22 1 2274 2794 602107467 602106946 0.000000e+00 835.0
20 TraesCS5D01G285900 chr3D 97.450 353 9 0 1 353 508632409 508632057 1.110000e-168 603.0
21 TraesCS5D01G285900 chr3D 87.654 81 5 4 494 572 532342029 532341952 3.830000e-14 89.8
22 TraesCS5D01G285900 chr3D 87.654 81 5 4 494 572 532342801 532342724 3.830000e-14 89.8
23 TraesCS5D01G285900 chr7D 95.411 523 23 1 2273 2794 73132253 73131731 0.000000e+00 832.0
24 TraesCS5D01G285900 chr7D 97.450 353 9 0 1 353 496996153 496996505 1.110000e-168 603.0
25 TraesCS5D01G285900 chr7D 97.175 354 10 0 1 354 105189670 105190023 1.430000e-167 599.0
26 TraesCS5D01G285900 chr7D 97.175 354 10 0 1 354 419778407 419778054 1.430000e-167 599.0
27 TraesCS5D01G285900 chr7D 76.211 475 101 7 1082 1547 230941852 230942323 1.000000e-59 241.0
28 TraesCS5D01G285900 chr7D 93.243 74 5 0 499 572 46702662 46702735 2.940000e-20 110.0
29 TraesCS5D01G285900 chr7D 90.909 66 3 2 495 558 9703729 9703793 4.960000e-13 86.1
30 TraesCS5D01G285900 chr1B 95.029 523 24 2 2273 2794 301254139 301254660 0.000000e+00 821.0
31 TraesCS5D01G285900 chr4D 95.019 522 25 1 2274 2794 232027286 232026765 0.000000e+00 819.0
32 TraesCS5D01G285900 chr4D 97.465 355 8 1 1 354 49565700 49566054 3.080000e-169 604.0
33 TraesCS5D01G285900 chr4D 97.458 354 8 1 1 353 49558869 49559222 1.110000e-168 603.0
34 TraesCS5D01G285900 chr1D 94.361 532 29 1 2264 2794 17123049 17122518 0.000000e+00 815.0
35 TraesCS5D01G285900 chr2D 97.450 353 9 0 1 353 505869996 505869644 1.110000e-168 603.0
36 TraesCS5D01G285900 chr2D 96.657 359 11 1 1 359 34955677 34955320 1.850000e-166 595.0
37 TraesCS5D01G285900 chr2A 96.919 357 11 0 1 357 464818355 464818711 1.430000e-167 599.0
38 TraesCS5D01G285900 chr2A 88.406 69 5 1 493 558 121223332 121223264 2.310000e-11 80.5
39 TraesCS5D01G285900 chr7A 75.828 513 112 7 1082 1585 243694672 243695181 1.660000e-62 250.0
40 TraesCS5D01G285900 chr7B 75.634 513 113 7 1082 1585 202359533 202360042 7.730000e-61 244.0
41 TraesCS5D01G285900 chr6A 86.076 79 7 2 494 568 20824745 20824823 6.420000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G285900 chr5D 386208788 386211582 2794 False 5162.000000 5162 100.000000 1 2795 1 chr5D.!!$F2 2794
1 TraesCS5D01G285900 chr5D 30613914 30614430 516 False 837.000000 837 95.938000 2273 2788 1 chr5D.!!$F1 515
2 TraesCS5D01G285900 chr5D 504512448 504512970 522 True 821.000000 821 95.029000 2273 2794 1 chr5D.!!$R3 521
3 TraesCS5D01G285900 chr5D 386512909 386513565 656 False 699.000000 699 86.191000 1001 1645 1 chr5D.!!$F3 644
4 TraesCS5D01G285900 chr5D 386589496 386590127 631 False 675.000000 675 86.342000 1001 1620 1 chr5D.!!$F4 619
5 TraesCS5D01G285900 chr5B 464144136 464145780 1644 False 1319.000000 2536 93.307000 596 2273 2 chr5B.!!$F5 1677
6 TraesCS5D01G285900 chr5B 26946486 26947008 522 False 837.000000 837 95.602000 2273 2794 1 chr5B.!!$F2 521
7 TraesCS5D01G285900 chr5B 10171056 10171582 526 False 833.000000 833 95.256000 2270 2794 1 chr5B.!!$F1 524
8 TraesCS5D01G285900 chr5B 464171030 464171686 656 False 704.000000 704 86.343000 1001 1645 1 chr5B.!!$F3 644
9 TraesCS5D01G285900 chr5B 464195332 464195943 611 False 660.000000 660 86.460000 1021 1620 1 chr5B.!!$F4 599
10 TraesCS5D01G285900 chr5A 488038062 488040051 1989 False 855.666667 2215 95.635667 595 2273 3 chr5A.!!$F2 1678
11 TraesCS5D01G285900 chr5A 488047430 488051584 4154 False 614.500000 706 86.887500 1001 1645 2 chr5A.!!$F3 644
12 TraesCS5D01G285900 chr3D 602106946 602107467 521 True 835.000000 835 95.594000 2274 2794 1 chr3D.!!$R2 520
13 TraesCS5D01G285900 chr7D 73131731 73132253 522 True 832.000000 832 95.411000 2273 2794 1 chr7D.!!$R1 521
14 TraesCS5D01G285900 chr1B 301254139 301254660 521 False 821.000000 821 95.029000 2273 2794 1 chr1B.!!$F1 521
15 TraesCS5D01G285900 chr4D 232026765 232027286 521 True 819.000000 819 95.019000 2274 2794 1 chr4D.!!$R1 520
16 TraesCS5D01G285900 chr1D 17122518 17123049 531 True 815.000000 815 94.361000 2264 2794 1 chr1D.!!$R1 530
17 TraesCS5D01G285900 chr7A 243694672 243695181 509 False 250.000000 250 75.828000 1082 1585 1 chr7A.!!$F1 503
18 TraesCS5D01G285900 chr7B 202359533 202360042 509 False 244.000000 244 75.634000 1082 1585 1 chr7B.!!$F1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 955 0.403271 ACACTCCCAAGCTGCTTCAT 59.597 50.0 12.82 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2489 5392 0.543749 GGATGGGTCCTCAGGTCTTG 59.456 60.0 0.0 0.0 41.6 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.819845 TGCATAATCTCATAGTCATAGGAACAT 58.180 33.333 0.00 0.00 0.00 2.71
40 41 9.147732 AGTCATAGGAACATGTATAAGTGATGA 57.852 33.333 0.00 0.00 0.00 2.92
41 42 9.764363 GTCATAGGAACATGTATAAGTGATGAA 57.236 33.333 0.00 0.00 0.00 2.57
43 44 9.987272 CATAGGAACATGTATAAGTGATGAAGA 57.013 33.333 0.00 0.00 0.00 2.87
46 47 9.388506 AGGAACATGTATAAGTGATGAAGAAAG 57.611 33.333 0.00 0.00 0.00 2.62
48 49 8.565896 AACATGTATAAGTGATGAAGAAAGCA 57.434 30.769 0.00 0.00 0.00 3.91
49 50 8.565896 ACATGTATAAGTGATGAAGAAAGCAA 57.434 30.769 0.00 0.00 0.00 3.91
54 55 7.870509 ATAAGTGATGAAGAAAGCAATAGCA 57.129 32.000 0.00 0.00 45.49 3.49
55 56 6.579666 AAGTGATGAAGAAAGCAATAGCAA 57.420 33.333 0.00 0.00 45.49 3.91
56 57 5.947443 AGTGATGAAGAAAGCAATAGCAAC 58.053 37.500 0.00 0.00 45.49 4.17
57 58 5.474532 AGTGATGAAGAAAGCAATAGCAACA 59.525 36.000 0.00 0.00 45.49 3.33
58 59 6.152323 AGTGATGAAGAAAGCAATAGCAACAT 59.848 34.615 0.00 0.00 45.49 2.71
59 60 7.337689 AGTGATGAAGAAAGCAATAGCAACATA 59.662 33.333 0.00 0.00 45.49 2.29
60 61 7.430502 GTGATGAAGAAAGCAATAGCAACATAC 59.569 37.037 0.00 0.00 45.49 2.39
61 62 7.337689 TGATGAAGAAAGCAATAGCAACATACT 59.662 33.333 0.00 0.00 45.49 2.12
62 63 8.737168 ATGAAGAAAGCAATAGCAACATACTA 57.263 30.769 0.00 0.00 45.49 1.82
63 64 8.560355 TGAAGAAAGCAATAGCAACATACTAA 57.440 30.769 0.00 0.00 45.49 2.24
65 66 9.278734 GAAGAAAGCAATAGCAACATACTAAAC 57.721 33.333 0.00 0.00 45.49 2.01
66 67 7.464358 AGAAAGCAATAGCAACATACTAAACG 58.536 34.615 0.00 0.00 45.49 3.60
67 68 6.978343 AAGCAATAGCAACATACTAAACGA 57.022 33.333 0.00 0.00 45.49 3.85
68 69 7.553881 AAGCAATAGCAACATACTAAACGAT 57.446 32.000 0.00 0.00 45.49 3.73
69 70 7.178712 AGCAATAGCAACATACTAAACGATC 57.821 36.000 0.00 0.00 45.49 3.69
70 71 6.761242 AGCAATAGCAACATACTAAACGATCA 59.239 34.615 0.00 0.00 45.49 2.92
71 72 7.279981 AGCAATAGCAACATACTAAACGATCAA 59.720 33.333 0.00 0.00 45.49 2.57
72 73 7.584123 GCAATAGCAACATACTAAACGATCAAG 59.416 37.037 0.00 0.00 41.58 3.02
73 74 8.604035 CAATAGCAACATACTAAACGATCAAGT 58.396 33.333 0.00 0.00 0.00 3.16
76 77 5.163854 GCAACATACTAAACGATCAAGTGCT 60.164 40.000 0.00 0.00 0.00 4.40
77 78 6.035650 GCAACATACTAAACGATCAAGTGCTA 59.964 38.462 0.00 0.00 0.00 3.49
78 79 7.412563 GCAACATACTAAACGATCAAGTGCTAA 60.413 37.037 0.00 0.00 0.00 3.09
79 80 7.757097 ACATACTAAACGATCAAGTGCTAAG 57.243 36.000 0.00 0.00 0.00 2.18
80 81 6.255887 ACATACTAAACGATCAAGTGCTAAGC 59.744 38.462 0.00 0.00 0.00 3.09
81 82 4.822026 ACTAAACGATCAAGTGCTAAGCT 58.178 39.130 0.00 0.00 0.00 3.74
82 83 5.962433 ACTAAACGATCAAGTGCTAAGCTA 58.038 37.500 0.00 0.00 0.00 3.32
83 84 6.395629 ACTAAACGATCAAGTGCTAAGCTAA 58.604 36.000 0.00 0.00 0.00 3.09
84 85 5.532025 AAACGATCAAGTGCTAAGCTAAC 57.468 39.130 0.00 0.00 0.00 2.34
86 87 2.535984 CGATCAAGTGCTAAGCTAACGG 59.464 50.000 0.00 0.00 0.00 4.44
87 88 3.733988 CGATCAAGTGCTAAGCTAACGGA 60.734 47.826 0.00 0.00 0.00 4.69
88 89 3.671008 TCAAGTGCTAAGCTAACGGAA 57.329 42.857 0.00 0.00 0.00 4.30
89 90 4.202245 TCAAGTGCTAAGCTAACGGAAT 57.798 40.909 0.00 0.00 0.00 3.01
90 91 3.932710 TCAAGTGCTAAGCTAACGGAATG 59.067 43.478 0.00 0.00 0.00 2.67
91 92 2.906354 AGTGCTAAGCTAACGGAATGG 58.094 47.619 0.00 0.00 0.00 3.16
93 94 1.557832 TGCTAAGCTAACGGAATGGGT 59.442 47.619 0.00 0.00 0.00 4.51
94 95 2.210961 GCTAAGCTAACGGAATGGGTC 58.789 52.381 0.00 0.00 0.00 4.46
95 96 2.419574 GCTAAGCTAACGGAATGGGTCA 60.420 50.000 0.00 0.00 0.00 4.02
96 97 2.871096 AAGCTAACGGAATGGGTCAA 57.129 45.000 0.00 0.00 0.00 3.18
98 99 1.628846 AGCTAACGGAATGGGTCAAGT 59.371 47.619 0.00 0.00 0.00 3.16
100 101 2.614481 GCTAACGGAATGGGTCAAGTCA 60.614 50.000 0.00 0.00 0.00 3.41
101 102 2.649531 AACGGAATGGGTCAAGTCAA 57.350 45.000 0.00 0.00 0.00 3.18
102 103 2.879103 ACGGAATGGGTCAAGTCAAT 57.121 45.000 0.00 0.00 0.00 2.57
103 104 2.711542 ACGGAATGGGTCAAGTCAATC 58.288 47.619 0.00 0.00 0.00 2.67
104 105 2.039746 ACGGAATGGGTCAAGTCAATCA 59.960 45.455 0.00 0.00 0.00 2.57
105 106 2.420022 CGGAATGGGTCAAGTCAATCAC 59.580 50.000 0.00 0.00 0.00 3.06
110 111 4.305539 TGGGTCAAGTCAATCACATCAT 57.694 40.909 0.00 0.00 0.00 2.45
111 112 4.665451 TGGGTCAAGTCAATCACATCATT 58.335 39.130 0.00 0.00 0.00 2.57
113 114 4.946157 GGGTCAAGTCAATCACATCATTCT 59.054 41.667 0.00 0.00 0.00 2.40
115 116 5.065731 GGTCAAGTCAATCACATCATTCTCC 59.934 44.000 0.00 0.00 0.00 3.71
116 117 5.879223 GTCAAGTCAATCACATCATTCTCCT 59.121 40.000 0.00 0.00 0.00 3.69
117 118 7.044181 GTCAAGTCAATCACATCATTCTCCTA 58.956 38.462 0.00 0.00 0.00 2.94
118 119 7.550551 GTCAAGTCAATCACATCATTCTCCTAA 59.449 37.037 0.00 0.00 0.00 2.69
119 120 8.270030 TCAAGTCAATCACATCATTCTCCTAAT 58.730 33.333 0.00 0.00 0.00 1.73
120 121 8.343366 CAAGTCAATCACATCATTCTCCTAATG 58.657 37.037 0.00 0.00 0.00 1.90
121 122 7.799081 AGTCAATCACATCATTCTCCTAATGA 58.201 34.615 3.13 3.13 40.50 2.57
122 123 8.438373 AGTCAATCACATCATTCTCCTAATGAT 58.562 33.333 7.28 7.28 45.40 2.45
129 130 5.296151 TCATTCTCCTAATGATGTGACCC 57.704 43.478 0.00 0.00 32.21 4.46
130 131 4.103153 TCATTCTCCTAATGATGTGACCCC 59.897 45.833 0.00 0.00 32.21 4.95
131 132 2.039418 TCTCCTAATGATGTGACCCCG 58.961 52.381 0.00 0.00 0.00 5.73
132 133 1.762957 CTCCTAATGATGTGACCCCGT 59.237 52.381 0.00 0.00 0.00 5.28
133 134 2.170607 CTCCTAATGATGTGACCCCGTT 59.829 50.000 0.00 0.00 0.00 4.44
134 135 3.376636 TCCTAATGATGTGACCCCGTTA 58.623 45.455 0.00 0.00 0.00 3.18
135 136 3.775866 TCCTAATGATGTGACCCCGTTAA 59.224 43.478 0.00 0.00 0.00 2.01
136 137 4.410883 TCCTAATGATGTGACCCCGTTAAT 59.589 41.667 0.00 0.00 0.00 1.40
138 139 3.924114 ATGATGTGACCCCGTTAATCA 57.076 42.857 0.00 0.00 0.00 2.57
139 140 3.704800 TGATGTGACCCCGTTAATCAA 57.295 42.857 0.00 0.00 0.00 2.57
141 142 4.594970 TGATGTGACCCCGTTAATCAAAT 58.405 39.130 0.00 0.00 0.00 2.32
142 143 4.397730 TGATGTGACCCCGTTAATCAAATG 59.602 41.667 0.00 0.00 0.00 2.32
143 144 4.022413 TGTGACCCCGTTAATCAAATGA 57.978 40.909 0.00 0.00 0.00 2.57
144 145 3.754323 TGTGACCCCGTTAATCAAATGAC 59.246 43.478 0.00 0.00 0.00 3.06
145 146 3.754323 GTGACCCCGTTAATCAAATGACA 59.246 43.478 0.00 0.00 0.00 3.58
146 147 4.216687 GTGACCCCGTTAATCAAATGACAA 59.783 41.667 0.00 0.00 0.00 3.18
147 148 4.216687 TGACCCCGTTAATCAAATGACAAC 59.783 41.667 0.00 0.00 0.00 3.32
148 149 4.403734 ACCCCGTTAATCAAATGACAACT 58.596 39.130 7.65 0.00 0.00 3.16
149 150 4.217550 ACCCCGTTAATCAAATGACAACTG 59.782 41.667 7.65 2.92 0.00 3.16
150 151 4.457603 CCCCGTTAATCAAATGACAACTGA 59.542 41.667 7.65 0.00 0.00 3.41
151 152 5.125417 CCCCGTTAATCAAATGACAACTGAT 59.875 40.000 7.65 0.00 0.00 2.90
152 153 6.029607 CCCGTTAATCAAATGACAACTGATG 58.970 40.000 3.99 0.00 30.28 3.07
166 167 6.620877 ACAACTGATGTCTATGGTTAGGAA 57.379 37.500 0.00 0.00 37.96 3.36
167 168 7.016153 ACAACTGATGTCTATGGTTAGGAAA 57.984 36.000 0.00 0.00 37.96 3.13
169 170 6.620877 ACTGATGTCTATGGTTAGGAAACA 57.379 37.500 0.00 0.00 37.34 2.83
170 171 7.200434 ACTGATGTCTATGGTTAGGAAACAT 57.800 36.000 0.00 0.00 37.34 2.71
171 172 8.319057 ACTGATGTCTATGGTTAGGAAACATA 57.681 34.615 0.00 0.00 37.34 2.29
172 173 8.768397 ACTGATGTCTATGGTTAGGAAACATAA 58.232 33.333 0.00 0.00 37.34 1.90
173 174 8.958119 TGATGTCTATGGTTAGGAAACATAAC 57.042 34.615 0.00 0.00 37.34 1.89
191 192 9.783256 AAACATAACCATCTTTAATTAACGAGC 57.217 29.630 9.87 0.00 0.00 5.03
192 193 8.732746 ACATAACCATCTTTAATTAACGAGCT 57.267 30.769 9.87 0.00 0.00 4.09
193 194 9.826574 ACATAACCATCTTTAATTAACGAGCTA 57.173 29.630 9.87 0.94 0.00 3.32
196 197 8.421673 AACCATCTTTAATTAACGAGCTAGTC 57.578 34.615 9.87 0.00 0.00 2.59
197 198 7.553334 ACCATCTTTAATTAACGAGCTAGTCA 58.447 34.615 9.87 0.00 0.00 3.41
198 199 8.038944 ACCATCTTTAATTAACGAGCTAGTCAA 58.961 33.333 9.87 0.00 0.00 3.18
200 201 9.088512 CATCTTTAATTAACGAGCTAGTCAAGT 57.911 33.333 9.87 0.00 0.00 3.16
202 203 9.784680 TCTTTAATTAACGAGCTAGTCAAGTAG 57.215 33.333 0.00 0.00 0.00 2.57
204 205 9.784680 TTTAATTAACGAGCTAGTCAAGTAGAG 57.215 33.333 0.00 0.00 0.00 2.43
205 206 5.814764 TTAACGAGCTAGTCAAGTAGAGG 57.185 43.478 0.00 0.00 0.00 3.69
206 207 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
207 208 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
208 209 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
209 210 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
210 211 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
211 212 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
212 213 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
213 214 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
214 215 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
216 217 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
217 218 5.591067 AGTCAAGTAGAGGCATACTAGTGAC 59.409 44.000 17.97 17.97 40.57 3.67
218 219 5.357314 GTCAAGTAGAGGCATACTAGTGACA 59.643 44.000 19.41 0.00 40.28 3.58
219 220 6.039941 GTCAAGTAGAGGCATACTAGTGACAT 59.960 42.308 19.41 0.00 40.28 3.06
220 221 6.607600 TCAAGTAGAGGCATACTAGTGACATT 59.392 38.462 5.39 0.00 34.90 2.71
222 223 6.369629 AGTAGAGGCATACTAGTGACATTCT 58.630 40.000 5.39 6.02 34.21 2.40
223 224 5.528043 AGAGGCATACTAGTGACATTCTG 57.472 43.478 5.39 0.00 0.00 3.02
224 225 4.959210 AGAGGCATACTAGTGACATTCTGT 59.041 41.667 5.39 0.00 0.00 3.41
225 226 5.423610 AGAGGCATACTAGTGACATTCTGTT 59.576 40.000 5.39 0.00 0.00 3.16
226 227 6.054860 AGGCATACTAGTGACATTCTGTTT 57.945 37.500 5.39 0.00 0.00 2.83
227 228 5.877012 AGGCATACTAGTGACATTCTGTTTG 59.123 40.000 5.39 0.00 0.00 2.93
228 229 5.643777 GGCATACTAGTGACATTCTGTTTGT 59.356 40.000 5.39 0.00 0.00 2.83
230 231 6.591834 GCATACTAGTGACATTCTGTTTGTCT 59.408 38.462 5.39 0.00 43.12 3.41
231 232 7.759886 GCATACTAGTGACATTCTGTTTGTCTA 59.240 37.037 5.39 0.00 43.12 2.59
232 233 9.809096 CATACTAGTGACATTCTGTTTGTCTAT 57.191 33.333 5.39 5.52 43.12 1.98
233 234 9.809096 ATACTAGTGACATTCTGTTTGTCTATG 57.191 33.333 5.39 0.00 43.12 2.23
234 235 7.671302 ACTAGTGACATTCTGTTTGTCTATGT 58.329 34.615 0.00 0.00 43.12 2.29
235 236 8.803235 ACTAGTGACATTCTGTTTGTCTATGTA 58.197 33.333 0.00 1.96 43.12 2.29
236 237 9.809096 CTAGTGACATTCTGTTTGTCTATGTAT 57.191 33.333 11.79 0.00 43.12 2.29
239 240 8.935844 GTGACATTCTGTTTGTCTATGTATTCA 58.064 33.333 11.79 0.00 43.12 2.57
241 242 8.846943 ACATTCTGTTTGTCTATGTATTCACA 57.153 30.769 0.00 0.00 39.52 3.58
242 243 8.721478 ACATTCTGTTTGTCTATGTATTCACAC 58.279 33.333 0.00 0.00 37.54 3.82
243 244 8.720562 CATTCTGTTTGTCTATGTATTCACACA 58.279 33.333 0.00 0.00 37.54 3.72
244 245 8.846943 TTCTGTTTGTCTATGTATTCACACAT 57.153 30.769 0.00 0.00 41.88 3.21
245 246 8.255394 TCTGTTTGTCTATGTATTCACACATG 57.745 34.615 0.00 0.00 39.46 3.21
246 247 7.877612 TCTGTTTGTCTATGTATTCACACATGT 59.122 33.333 0.00 0.00 39.46 3.21
249 250 9.151471 GTTTGTCTATGTATTCACACATGTACT 57.849 33.333 0.00 0.00 39.46 2.73
258 259 8.705134 TGTATTCACACATGTACTAAGTTTTCG 58.295 33.333 0.00 0.00 0.00 3.46
260 261 5.603596 TCACACATGTACTAAGTTTTCGGT 58.396 37.500 0.00 0.00 0.00 4.69
261 262 6.050432 TCACACATGTACTAAGTTTTCGGTT 58.950 36.000 0.00 0.00 0.00 4.44
262 263 7.208777 TCACACATGTACTAAGTTTTCGGTTA 58.791 34.615 0.00 0.00 0.00 2.85
264 265 8.500773 CACACATGTACTAAGTTTTCGGTTAAT 58.499 33.333 0.00 0.00 0.00 1.40
265 266 9.709495 ACACATGTACTAAGTTTTCGGTTAATA 57.291 29.630 0.00 0.00 0.00 0.98
266 267 9.962759 CACATGTACTAAGTTTTCGGTTAATAC 57.037 33.333 0.00 0.00 0.00 1.89
267 268 9.709495 ACATGTACTAAGTTTTCGGTTAATACA 57.291 29.630 0.00 0.00 0.00 2.29
340 341 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
354 355 5.066593 CCTCTAGGGCATATTTCCTTCAAC 58.933 45.833 0.00 0.00 34.75 3.18
355 356 5.163152 CCTCTAGGGCATATTTCCTTCAACT 60.163 44.000 0.00 0.00 34.75 3.16
356 357 6.327386 TCTAGGGCATATTTCCTTCAACTT 57.673 37.500 0.00 0.00 34.75 2.66
357 358 6.731467 TCTAGGGCATATTTCCTTCAACTTT 58.269 36.000 0.00 0.00 34.75 2.66
358 359 7.182060 TCTAGGGCATATTTCCTTCAACTTTT 58.818 34.615 0.00 0.00 34.75 2.27
359 360 6.041423 AGGGCATATTTCCTTCAACTTTTG 57.959 37.500 0.00 0.00 0.00 2.44
360 361 5.543790 AGGGCATATTTCCTTCAACTTTTGT 59.456 36.000 0.00 0.00 0.00 2.83
361 362 5.639082 GGGCATATTTCCTTCAACTTTTGTG 59.361 40.000 0.00 0.00 0.00 3.33
362 363 5.639082 GGCATATTTCCTTCAACTTTTGTGG 59.361 40.000 0.00 0.00 0.00 4.17
363 364 6.223120 GCATATTTCCTTCAACTTTTGTGGT 58.777 36.000 0.00 0.00 0.00 4.16
364 365 6.705825 GCATATTTCCTTCAACTTTTGTGGTT 59.294 34.615 0.00 0.00 0.00 3.67
365 366 7.226523 GCATATTTCCTTCAACTTTTGTGGTTT 59.773 33.333 0.00 0.00 0.00 3.27
366 367 9.108284 CATATTTCCTTCAACTTTTGTGGTTTT 57.892 29.630 0.00 0.00 0.00 2.43
367 368 7.994425 ATTTCCTTCAACTTTTGTGGTTTTT 57.006 28.000 0.00 0.00 0.00 1.94
388 389 3.992943 TTGGAACATCGTCCCAATAGT 57.007 42.857 0.00 0.00 39.30 2.12
389 390 3.992943 TGGAACATCGTCCCAATAGTT 57.007 42.857 0.00 0.00 36.80 2.24
390 391 3.605634 TGGAACATCGTCCCAATAGTTG 58.394 45.455 0.00 0.00 36.80 3.16
391 392 3.008594 TGGAACATCGTCCCAATAGTTGT 59.991 43.478 0.00 0.00 36.80 3.32
392 393 3.374058 GGAACATCGTCCCAATAGTTGTG 59.626 47.826 0.00 0.00 0.00 3.33
393 394 2.356135 ACATCGTCCCAATAGTTGTGC 58.644 47.619 0.00 0.00 0.00 4.57
394 395 2.027192 ACATCGTCCCAATAGTTGTGCT 60.027 45.455 0.00 0.00 0.00 4.40
395 396 2.851263 TCGTCCCAATAGTTGTGCTT 57.149 45.000 0.00 0.00 0.00 3.91
396 397 2.695359 TCGTCCCAATAGTTGTGCTTC 58.305 47.619 0.00 0.00 0.00 3.86
397 398 1.737793 CGTCCCAATAGTTGTGCTTCC 59.262 52.381 0.00 0.00 0.00 3.46
398 399 2.615493 CGTCCCAATAGTTGTGCTTCCT 60.615 50.000 0.00 0.00 0.00 3.36
399 400 3.421844 GTCCCAATAGTTGTGCTTCCTT 58.578 45.455 0.00 0.00 0.00 3.36
400 401 3.191371 GTCCCAATAGTTGTGCTTCCTTG 59.809 47.826 0.00 0.00 0.00 3.61
401 402 3.157087 CCCAATAGTTGTGCTTCCTTGT 58.843 45.455 0.00 0.00 0.00 3.16
402 403 4.042311 TCCCAATAGTTGTGCTTCCTTGTA 59.958 41.667 0.00 0.00 0.00 2.41
403 404 4.949856 CCCAATAGTTGTGCTTCCTTGTAT 59.050 41.667 0.00 0.00 0.00 2.29
404 405 6.069905 TCCCAATAGTTGTGCTTCCTTGTATA 60.070 38.462 0.00 0.00 0.00 1.47
405 406 6.772716 CCCAATAGTTGTGCTTCCTTGTATAT 59.227 38.462 0.00 0.00 0.00 0.86
407 408 8.774586 CCAATAGTTGTGCTTCCTTGTATATAC 58.225 37.037 5.89 5.89 0.00 1.47
408 409 9.547753 CAATAGTTGTGCTTCCTTGTATATACT 57.452 33.333 13.89 0.00 0.00 2.12
411 412 8.534954 AGTTGTGCTTCCTTGTATATACTAGA 57.465 34.615 21.38 9.95 32.03 2.43
412 413 8.978472 AGTTGTGCTTCCTTGTATATACTAGAA 58.022 33.333 21.38 15.36 32.03 2.10
413 414 9.595823 GTTGTGCTTCCTTGTATATACTAGAAA 57.404 33.333 21.38 10.11 32.03 2.52
432 433 8.800332 ACTAGAAAAATTTCTCATGCATGTTCT 58.200 29.630 25.43 23.00 43.72 3.01
435 436 8.800332 AGAAAAATTTCTCATGCATGTTCTAGT 58.200 29.630 25.43 7.53 43.72 2.57
437 438 9.846248 AAAAATTTCTCATGCATGTTCTAGTAC 57.154 29.630 25.43 0.00 0.00 2.73
438 439 8.565896 AAATTTCTCATGCATGTTCTAGTACA 57.434 30.769 25.43 4.54 0.00 2.90
439 440 8.743085 AATTTCTCATGCATGTTCTAGTACAT 57.257 30.769 25.43 9.03 39.27 2.29
447 448 5.500645 CATGTTCTAGTACATGTCCGAGA 57.499 43.478 26.06 0.00 46.53 4.04
448 449 6.078202 CATGTTCTAGTACATGTCCGAGAT 57.922 41.667 26.06 0.00 46.53 2.75
449 450 6.507900 CATGTTCTAGTACATGTCCGAGATT 58.492 40.000 26.06 0.00 46.53 2.40
451 452 7.634671 TGTTCTAGTACATGTCCGAGATTTA 57.365 36.000 0.00 0.00 0.00 1.40
453 454 6.630444 TCTAGTACATGTCCGAGATTTACC 57.370 41.667 0.00 0.00 0.00 2.85
454 455 6.363065 TCTAGTACATGTCCGAGATTTACCT 58.637 40.000 0.00 0.00 0.00 3.08
455 456 7.512130 TCTAGTACATGTCCGAGATTTACCTA 58.488 38.462 0.00 0.00 0.00 3.08
456 457 6.388435 AGTACATGTCCGAGATTTACCTAC 57.612 41.667 0.00 0.00 0.00 3.18
457 458 4.667519 ACATGTCCGAGATTTACCTACC 57.332 45.455 0.00 0.00 0.00 3.18
458 459 4.028131 ACATGTCCGAGATTTACCTACCA 58.972 43.478 0.00 0.00 0.00 3.25
459 460 4.654262 ACATGTCCGAGATTTACCTACCAT 59.346 41.667 0.00 0.00 0.00 3.55
460 461 5.836898 ACATGTCCGAGATTTACCTACCATA 59.163 40.000 0.00 0.00 0.00 2.74
461 462 6.497259 ACATGTCCGAGATTTACCTACCATAT 59.503 38.462 0.00 0.00 0.00 1.78
463 464 6.989659 TGTCCGAGATTTACCTACCATATTC 58.010 40.000 0.00 0.00 0.00 1.75
464 465 6.551975 TGTCCGAGATTTACCTACCATATTCA 59.448 38.462 0.00 0.00 0.00 2.57
465 466 7.234782 TGTCCGAGATTTACCTACCATATTCAT 59.765 37.037 0.00 0.00 0.00 2.57
466 467 7.545965 GTCCGAGATTTACCTACCATATTCATG 59.454 40.741 0.00 0.00 0.00 3.07
467 468 7.234782 TCCGAGATTTACCTACCATATTCATGT 59.765 37.037 0.00 0.00 0.00 3.21
469 470 8.088365 CGAGATTTACCTACCATATTCATGTGA 58.912 37.037 0.00 0.00 0.00 3.58
470 471 9.950496 GAGATTTACCTACCATATTCATGTGAT 57.050 33.333 0.00 0.00 0.00 3.06
473 474 9.866655 ATTTACCTACCATATTCATGTGATTGT 57.133 29.630 0.00 0.00 0.00 2.71
474 475 8.675705 TTACCTACCATATTCATGTGATTGTG 57.324 34.615 0.00 0.00 0.00 3.33
475 476 6.662755 ACCTACCATATTCATGTGATTGTGT 58.337 36.000 0.00 0.00 0.00 3.72
477 478 8.271458 ACCTACCATATTCATGTGATTGTGTAA 58.729 33.333 0.00 0.00 0.00 2.41
478 479 9.119418 CCTACCATATTCATGTGATTGTGTAAA 57.881 33.333 0.00 0.00 0.00 2.01
514 515 6.766997 TTATAAATTATTCCCTCCGTCCCA 57.233 37.500 0.00 0.00 0.00 4.37
515 516 5.860648 ATAAATTATTCCCTCCGTCCCAT 57.139 39.130 0.00 0.00 0.00 4.00
516 517 6.963117 ATAAATTATTCCCTCCGTCCCATA 57.037 37.500 0.00 0.00 0.00 2.74
517 518 5.656549 AAATTATTCCCTCCGTCCCATAA 57.343 39.130 0.00 0.00 0.00 1.90
518 519 5.860648 AATTATTCCCTCCGTCCCATAAT 57.139 39.130 0.00 0.00 0.00 1.28
520 521 7.525158 AATTATTCCCTCCGTCCCATAATAT 57.475 36.000 0.00 0.00 0.00 1.28
521 522 8.632731 AATTATTCCCTCCGTCCCATAATATA 57.367 34.615 0.00 0.00 0.00 0.86
522 523 8.632731 ATTATTCCCTCCGTCCCATAATATAA 57.367 34.615 0.00 0.00 0.00 0.98
523 524 6.561519 ATTCCCTCCGTCCCATAATATAAG 57.438 41.667 0.00 0.00 0.00 1.73
524 525 5.279562 TCCCTCCGTCCCATAATATAAGA 57.720 43.478 0.00 0.00 0.00 2.10
526 527 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
527 528 4.712337 CCTCCGTCCCATAATATAAGAGCT 59.288 45.833 0.00 0.00 0.00 4.09
528 529 5.892119 CCTCCGTCCCATAATATAAGAGCTA 59.108 44.000 0.00 0.00 0.00 3.32
529 530 6.039941 CCTCCGTCCCATAATATAAGAGCTAG 59.960 46.154 0.00 0.00 0.00 3.42
530 531 6.491383 TCCGTCCCATAATATAAGAGCTAGT 58.509 40.000 0.00 0.00 0.00 2.57
533 534 7.251994 CGTCCCATAATATAAGAGCTAGTGTC 58.748 42.308 0.00 0.00 0.00 3.67
534 535 7.094334 CGTCCCATAATATAAGAGCTAGTGTCA 60.094 40.741 0.00 0.00 0.00 3.58
535 536 8.585881 GTCCCATAATATAAGAGCTAGTGTCAA 58.414 37.037 0.00 0.00 0.00 3.18
536 537 9.154632 TCCCATAATATAAGAGCTAGTGTCAAA 57.845 33.333 0.00 0.00 0.00 2.69
537 538 9.778741 CCCATAATATAAGAGCTAGTGTCAAAA 57.221 33.333 0.00 0.00 0.00 2.44
541 542 3.879932 AAGAGCTAGTGTCAAAAACGC 57.120 42.857 0.00 0.00 38.74 4.84
544 545 3.060602 GAGCTAGTGTCAAAAACGCTCT 58.939 45.455 0.00 0.00 45.69 4.09
545 546 3.467803 AGCTAGTGTCAAAAACGCTCTT 58.532 40.909 0.00 0.00 45.69 2.85
546 547 4.628074 AGCTAGTGTCAAAAACGCTCTTA 58.372 39.130 0.00 0.00 45.69 2.10
547 548 4.448060 AGCTAGTGTCAAAAACGCTCTTAC 59.552 41.667 0.00 0.00 45.69 2.34
548 549 4.210537 GCTAGTGTCAAAAACGCTCTTACA 59.789 41.667 0.00 0.00 45.69 2.41
549 550 5.107065 GCTAGTGTCAAAAACGCTCTTACAT 60.107 40.000 0.00 0.00 45.69 2.29
550 551 5.751243 AGTGTCAAAAACGCTCTTACATT 57.249 34.783 0.00 0.00 45.69 2.71
551 552 6.854496 AGTGTCAAAAACGCTCTTACATTA 57.146 33.333 0.00 0.00 45.69 1.90
552 553 7.435068 AGTGTCAAAAACGCTCTTACATTAT 57.565 32.000 0.00 0.00 45.69 1.28
554 555 6.523201 GTGTCAAAAACGCTCTTACATTATGG 59.477 38.462 0.00 0.00 35.42 2.74
556 557 5.941058 TCAAAAACGCTCTTACATTATGGGA 59.059 36.000 0.00 0.00 0.00 4.37
557 558 5.813080 AAAACGCTCTTACATTATGGGAC 57.187 39.130 0.00 0.00 0.00 4.46
572 573 3.449746 TGGGACAAAGGGAGTATTTGG 57.550 47.619 3.74 0.00 41.05 3.28
573 574 2.719705 TGGGACAAAGGGAGTATTTGGT 59.280 45.455 3.74 0.00 41.05 3.67
574 575 3.917629 TGGGACAAAGGGAGTATTTGGTA 59.082 43.478 3.74 0.00 41.05 3.25
576 577 5.162969 TGGGACAAAGGGAGTATTTGGTAAA 60.163 40.000 3.74 0.00 41.05 2.01
577 578 5.184479 GGGACAAAGGGAGTATTTGGTAAAC 59.816 44.000 3.74 0.00 41.05 2.01
578 579 5.771165 GGACAAAGGGAGTATTTGGTAAACA 59.229 40.000 3.74 0.00 41.05 2.83
579 580 6.294342 GGACAAAGGGAGTATTTGGTAAACAC 60.294 42.308 3.74 0.00 41.05 3.32
580 581 6.370453 ACAAAGGGAGTATTTGGTAAACACT 58.630 36.000 3.74 0.00 41.05 3.55
581 582 6.837048 ACAAAGGGAGTATTTGGTAAACACTT 59.163 34.615 3.74 0.00 41.05 3.16
582 583 8.000127 ACAAAGGGAGTATTTGGTAAACACTTA 59.000 33.333 3.74 0.00 41.05 2.24
583 584 9.020731 CAAAGGGAGTATTTGGTAAACACTTAT 57.979 33.333 0.00 0.00 34.66 1.73
584 585 9.596308 AAAGGGAGTATTTGGTAAACACTTATT 57.404 29.630 0.00 0.00 0.00 1.40
585 586 8.575649 AGGGAGTATTTGGTAAACACTTATTG 57.424 34.615 0.00 0.00 0.00 1.90
588 589 7.122204 GGAGTATTTGGTAAACACTTATTGGCT 59.878 37.037 0.00 0.00 0.00 4.75
589 590 8.417273 AGTATTTGGTAAACACTTATTGGCTT 57.583 30.769 0.00 0.00 0.00 4.35
590 591 9.523168 AGTATTTGGTAAACACTTATTGGCTTA 57.477 29.630 0.00 0.00 0.00 3.09
643 644 2.939103 GACTTGCGTGATTAAGGAGCAT 59.061 45.455 0.00 0.00 37.68 3.79
650 651 4.271687 CGTGATTAAGGAGCATTTAACGC 58.728 43.478 0.00 0.00 0.00 4.84
767 772 2.595238 ACACGTCTCCCTGTACTTTCT 58.405 47.619 0.00 0.00 0.00 2.52
777 782 6.068971 TCTCCCTGTACTTTCTATGTACTCCT 60.069 42.308 0.00 0.00 40.44 3.69
779 784 7.059156 TCCCTGTACTTTCTATGTACTCCTAC 58.941 42.308 0.00 0.00 40.44 3.18
820 825 9.310716 AGTTATAGTATTTCTCTTAACCGTTGC 57.689 33.333 0.00 0.00 31.16 4.17
917 922 4.896482 TGGCTATTTAAACCACCAAGTTGT 59.104 37.500 1.45 0.00 0.00 3.32
950 955 0.403271 ACACTCCCAAGCTGCTTCAT 59.597 50.000 12.82 0.00 0.00 2.57
951 956 1.093159 CACTCCCAAGCTGCTTCATC 58.907 55.000 12.82 0.00 0.00 2.92
952 957 0.694771 ACTCCCAAGCTGCTTCATCA 59.305 50.000 12.82 0.00 0.00 3.07
967 972 4.683320 GCTTCATCAAAGAGCAAAAACCTC 59.317 41.667 0.00 0.00 37.12 3.85
976 981 3.266636 GAGCAAAAACCTCTAGGCTCTC 58.733 50.000 0.00 0.00 43.21 3.20
1076 3601 2.343758 GCTGGTCCTTGTCTCGCA 59.656 61.111 0.00 0.00 0.00 5.10
1666 4209 2.352032 GGTAGCGTGGAGGCAGAGT 61.352 63.158 0.00 0.00 34.64 3.24
1858 4401 6.153067 AGGATCGATCGAGCTAGTTTTATTG 58.847 40.000 29.98 0.00 0.00 1.90
1887 4430 4.336993 TGGACACGGATGTATAATTTTGCC 59.663 41.667 0.00 0.00 39.95 4.52
1996 4549 1.698506 GGATGTGTTGGGTCAAACCA 58.301 50.000 0.00 0.00 41.02 3.67
2072 4973 4.284746 AGGGAGTCAACTCGAAAAGAATCT 59.715 41.667 4.17 0.00 43.76 2.40
2217 5118 7.335924 GGTCAGGTTGCTACATAATAAACTTGA 59.664 37.037 0.00 0.00 35.35 3.02
2221 5122 9.073475 AGGTTGCTACATAATAAACTTGAACAA 57.927 29.630 0.00 0.00 0.00 2.83
2474 5377 4.634004 CCTAATACCAAACAGACATCGCAA 59.366 41.667 0.00 0.00 0.00 4.85
2475 5378 5.296780 CCTAATACCAAACAGACATCGCAAT 59.703 40.000 0.00 0.00 0.00 3.56
2476 5379 5.643379 AATACCAAACAGACATCGCAATT 57.357 34.783 0.00 0.00 0.00 2.32
2489 5392 6.038271 AGACATCGCAATTAAACCTAACATCC 59.962 38.462 0.00 0.00 0.00 3.51
2594 5497 1.134280 CCACCGCTCCATCTTCAGAAT 60.134 52.381 0.00 0.00 0.00 2.40
2625 5528 2.271800 CATCAACCTTGCTCGGTCTAC 58.728 52.381 0.00 0.00 35.89 2.59
2631 5534 2.307768 CCTTGCTCGGTCTACCTATCA 58.692 52.381 0.00 0.00 0.00 2.15
2741 5644 1.376466 CTGCCAAGTACCACCAGCT 59.624 57.895 0.00 0.00 0.00 4.24
2776 5679 2.996621 GTCTTTGGAGAATCTGTCGTGG 59.003 50.000 0.00 0.00 32.66 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.650490 TGTTCCTATGACTATGAGATTATGCAA 58.350 33.333 0.00 0.00 0.00 4.08
1 2 8.193953 TGTTCCTATGACTATGAGATTATGCA 57.806 34.615 0.00 0.00 0.00 3.96
15 16 9.764363 TTCATCACTTATACATGTTCCTATGAC 57.236 33.333 2.30 0.00 0.00 3.06
17 18 9.987272 TCTTCATCACTTATACATGTTCCTATG 57.013 33.333 2.30 0.00 0.00 2.23
20 21 9.388506 CTTTCTTCATCACTTATACATGTTCCT 57.611 33.333 2.30 0.00 0.00 3.36
22 23 8.668353 TGCTTTCTTCATCACTTATACATGTTC 58.332 33.333 2.30 0.00 0.00 3.18
24 25 8.565896 TTGCTTTCTTCATCACTTATACATGT 57.434 30.769 2.69 2.69 0.00 3.21
27 28 8.830580 GCTATTGCTTTCTTCATCACTTATACA 58.169 33.333 0.00 0.00 36.03 2.29
29 30 8.962884 TGCTATTGCTTTCTTCATCACTTATA 57.037 30.769 0.00 0.00 40.48 0.98
30 31 7.870509 TGCTATTGCTTTCTTCATCACTTAT 57.129 32.000 0.00 0.00 40.48 1.73
31 32 7.174772 TGTTGCTATTGCTTTCTTCATCACTTA 59.825 33.333 0.00 0.00 40.48 2.24
32 33 6.016024 TGTTGCTATTGCTTTCTTCATCACTT 60.016 34.615 0.00 0.00 40.48 3.16
33 34 5.474532 TGTTGCTATTGCTTTCTTCATCACT 59.525 36.000 0.00 0.00 40.48 3.41
36 37 7.701445 AGTATGTTGCTATTGCTTTCTTCATC 58.299 34.615 0.00 0.00 40.48 2.92
37 38 7.636150 AGTATGTTGCTATTGCTTTCTTCAT 57.364 32.000 0.00 0.17 40.48 2.57
38 39 8.560355 TTAGTATGTTGCTATTGCTTTCTTCA 57.440 30.769 0.00 0.00 40.48 3.02
40 41 7.962918 CGTTTAGTATGTTGCTATTGCTTTCTT 59.037 33.333 0.00 0.00 40.48 2.52
41 42 7.333423 TCGTTTAGTATGTTGCTATTGCTTTCT 59.667 33.333 0.00 0.00 40.48 2.52
43 44 7.372451 TCGTTTAGTATGTTGCTATTGCTTT 57.628 32.000 0.00 0.00 40.48 3.51
44 45 6.978343 TCGTTTAGTATGTTGCTATTGCTT 57.022 33.333 0.00 0.00 40.48 3.91
45 46 6.761242 TGATCGTTTAGTATGTTGCTATTGCT 59.239 34.615 0.00 0.00 40.48 3.91
46 47 6.943981 TGATCGTTTAGTATGTTGCTATTGC 58.056 36.000 0.00 0.00 40.20 3.56
48 49 8.604035 CACTTGATCGTTTAGTATGTTGCTATT 58.396 33.333 0.00 0.00 0.00 1.73
49 50 7.254455 GCACTTGATCGTTTAGTATGTTGCTAT 60.254 37.037 0.00 0.00 0.00 2.97
51 52 5.163854 GCACTTGATCGTTTAGTATGTTGCT 60.164 40.000 0.00 0.00 0.00 3.91
54 55 7.201530 GCTTAGCACTTGATCGTTTAGTATGTT 60.202 37.037 0.00 0.00 0.00 2.71
55 56 6.255887 GCTTAGCACTTGATCGTTTAGTATGT 59.744 38.462 0.00 0.00 0.00 2.29
56 57 6.477033 AGCTTAGCACTTGATCGTTTAGTATG 59.523 38.462 7.07 0.00 0.00 2.39
57 58 6.574350 AGCTTAGCACTTGATCGTTTAGTAT 58.426 36.000 7.07 0.00 0.00 2.12
58 59 5.962433 AGCTTAGCACTTGATCGTTTAGTA 58.038 37.500 7.07 0.00 0.00 1.82
59 60 4.822026 AGCTTAGCACTTGATCGTTTAGT 58.178 39.130 7.07 0.00 0.00 2.24
60 61 6.506513 CGTTAGCTTAGCACTTGATCGTTTAG 60.507 42.308 7.07 0.00 0.00 1.85
61 62 5.287752 CGTTAGCTTAGCACTTGATCGTTTA 59.712 40.000 7.07 0.00 0.00 2.01
62 63 4.091509 CGTTAGCTTAGCACTTGATCGTTT 59.908 41.667 7.07 0.00 0.00 3.60
63 64 3.612860 CGTTAGCTTAGCACTTGATCGTT 59.387 43.478 7.07 0.00 0.00 3.85
65 66 2.535984 CCGTTAGCTTAGCACTTGATCG 59.464 50.000 7.07 1.46 0.00 3.69
66 67 3.782046 TCCGTTAGCTTAGCACTTGATC 58.218 45.455 7.07 0.00 0.00 2.92
67 68 3.887621 TCCGTTAGCTTAGCACTTGAT 57.112 42.857 7.07 0.00 0.00 2.57
68 69 3.671008 TTCCGTTAGCTTAGCACTTGA 57.329 42.857 7.07 0.00 0.00 3.02
69 70 3.063997 CCATTCCGTTAGCTTAGCACTTG 59.936 47.826 7.07 0.00 0.00 3.16
70 71 3.270877 CCATTCCGTTAGCTTAGCACTT 58.729 45.455 7.07 0.00 0.00 3.16
71 72 2.420129 CCCATTCCGTTAGCTTAGCACT 60.420 50.000 7.07 0.00 0.00 4.40
72 73 1.940613 CCCATTCCGTTAGCTTAGCAC 59.059 52.381 7.07 0.00 0.00 4.40
73 74 1.557832 ACCCATTCCGTTAGCTTAGCA 59.442 47.619 7.07 0.00 0.00 3.49
76 77 3.262405 ACTTGACCCATTCCGTTAGCTTA 59.738 43.478 0.00 0.00 0.00 3.09
77 78 2.039879 ACTTGACCCATTCCGTTAGCTT 59.960 45.455 0.00 0.00 0.00 3.74
78 79 1.628846 ACTTGACCCATTCCGTTAGCT 59.371 47.619 0.00 0.00 0.00 3.32
79 80 2.007608 GACTTGACCCATTCCGTTAGC 58.992 52.381 0.00 0.00 0.00 3.09
80 81 3.328382 TGACTTGACCCATTCCGTTAG 57.672 47.619 0.00 0.00 0.00 2.34
81 82 3.773418 TTGACTTGACCCATTCCGTTA 57.227 42.857 0.00 0.00 0.00 3.18
82 83 2.649531 TTGACTTGACCCATTCCGTT 57.350 45.000 0.00 0.00 0.00 4.44
83 84 2.039746 TGATTGACTTGACCCATTCCGT 59.960 45.455 0.00 0.00 0.00 4.69
84 85 2.420022 GTGATTGACTTGACCCATTCCG 59.580 50.000 0.00 0.00 0.00 4.30
86 87 4.701651 TGATGTGATTGACTTGACCCATTC 59.298 41.667 0.00 0.00 0.00 2.67
87 88 4.665451 TGATGTGATTGACTTGACCCATT 58.335 39.130 0.00 0.00 0.00 3.16
88 89 4.305539 TGATGTGATTGACTTGACCCAT 57.694 40.909 0.00 0.00 0.00 4.00
89 90 3.786368 TGATGTGATTGACTTGACCCA 57.214 42.857 0.00 0.00 0.00 4.51
90 91 4.946157 AGAATGATGTGATTGACTTGACCC 59.054 41.667 0.00 0.00 0.00 4.46
91 92 5.065731 GGAGAATGATGTGATTGACTTGACC 59.934 44.000 0.00 0.00 0.00 4.02
93 94 6.058553 AGGAGAATGATGTGATTGACTTGA 57.941 37.500 0.00 0.00 0.00 3.02
94 95 7.854557 TTAGGAGAATGATGTGATTGACTTG 57.145 36.000 0.00 0.00 0.00 3.16
95 96 8.270030 TCATTAGGAGAATGATGTGATTGACTT 58.730 33.333 0.00 0.00 32.21 3.01
96 97 7.799081 TCATTAGGAGAATGATGTGATTGACT 58.201 34.615 0.00 0.00 32.21 3.41
110 111 2.434336 CGGGGTCACATCATTAGGAGAA 59.566 50.000 0.00 0.00 0.00 2.87
111 112 2.039418 CGGGGTCACATCATTAGGAGA 58.961 52.381 0.00 0.00 0.00 3.71
113 114 1.874129 ACGGGGTCACATCATTAGGA 58.126 50.000 0.00 0.00 0.00 2.94
115 116 5.364778 TGATTAACGGGGTCACATCATTAG 58.635 41.667 0.00 0.00 0.00 1.73
116 117 5.360649 TGATTAACGGGGTCACATCATTA 57.639 39.130 0.00 0.00 0.00 1.90
117 118 4.229304 TGATTAACGGGGTCACATCATT 57.771 40.909 0.00 0.00 0.00 2.57
118 119 3.924114 TGATTAACGGGGTCACATCAT 57.076 42.857 0.00 0.00 0.00 2.45
119 120 3.704800 TTGATTAACGGGGTCACATCA 57.295 42.857 0.00 0.00 0.00 3.07
120 121 4.638421 TCATTTGATTAACGGGGTCACATC 59.362 41.667 0.00 0.00 0.00 3.06
121 122 4.398044 GTCATTTGATTAACGGGGTCACAT 59.602 41.667 0.00 0.00 0.00 3.21
122 123 3.754323 GTCATTTGATTAACGGGGTCACA 59.246 43.478 0.00 0.00 0.00 3.58
123 124 3.754323 TGTCATTTGATTAACGGGGTCAC 59.246 43.478 0.00 0.00 0.00 3.67
124 125 4.022413 TGTCATTTGATTAACGGGGTCA 57.978 40.909 0.00 0.00 0.00 4.02
126 127 4.217550 CAGTTGTCATTTGATTAACGGGGT 59.782 41.667 0.00 0.00 32.73 4.95
127 128 4.457603 TCAGTTGTCATTTGATTAACGGGG 59.542 41.667 0.00 4.10 32.73 5.73
128 129 5.621197 TCAGTTGTCATTTGATTAACGGG 57.379 39.130 0.00 5.66 32.73 5.28
129 130 6.611381 ACATCAGTTGTCATTTGATTAACGG 58.389 36.000 0.00 5.39 30.89 4.44
143 144 6.620877 TTCCTAACCATAGACATCAGTTGT 57.379 37.500 0.00 0.00 42.79 3.32
144 145 6.878923 TGTTTCCTAACCATAGACATCAGTTG 59.121 38.462 0.00 0.00 33.15 3.16
145 146 7.016153 TGTTTCCTAACCATAGACATCAGTT 57.984 36.000 0.00 0.00 33.15 3.16
146 147 6.620877 TGTTTCCTAACCATAGACATCAGT 57.379 37.500 0.00 0.00 33.15 3.41
147 148 9.046296 GTTATGTTTCCTAACCATAGACATCAG 57.954 37.037 0.00 0.00 30.80 2.90
148 149 7.990886 GGTTATGTTTCCTAACCATAGACATCA 59.009 37.037 7.24 0.00 44.95 3.07
149 150 8.379457 GGTTATGTTTCCTAACCATAGACATC 57.621 38.462 7.24 0.00 44.95 3.06
165 166 9.783256 GCTCGTTAATTAAAGATGGTTATGTTT 57.217 29.630 13.20 0.00 34.54 2.83
166 167 9.174166 AGCTCGTTAATTAAAGATGGTTATGTT 57.826 29.630 13.20 0.00 0.00 2.71
167 168 8.732746 AGCTCGTTAATTAAAGATGGTTATGT 57.267 30.769 13.20 0.00 0.00 2.29
170 171 9.525409 GACTAGCTCGTTAATTAAAGATGGTTA 57.475 33.333 13.20 5.82 0.00 2.85
171 172 8.038944 TGACTAGCTCGTTAATTAAAGATGGTT 58.961 33.333 13.20 5.08 0.00 3.67
172 173 7.553334 TGACTAGCTCGTTAATTAAAGATGGT 58.447 34.615 13.20 8.65 0.00 3.55
173 174 8.420374 TTGACTAGCTCGTTAATTAAAGATGG 57.580 34.615 13.20 5.81 0.00 3.51
178 179 9.784680 CTCTACTTGACTAGCTCGTTAATTAAA 57.215 33.333 0.00 0.00 0.00 1.52
180 181 7.468357 GCCTCTACTTGACTAGCTCGTTAATTA 60.468 40.741 0.00 0.00 0.00 1.40
183 184 4.096081 GCCTCTACTTGACTAGCTCGTTAA 59.904 45.833 0.00 0.00 0.00 2.01
184 185 3.626670 GCCTCTACTTGACTAGCTCGTTA 59.373 47.826 0.00 0.00 0.00 3.18
185 186 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
186 187 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
187 188 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
188 189 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
189 190 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
190 191 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
191 192 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
192 193 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
193 194 5.591067 GTCACTAGTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 36.95 3.41
194 195 5.357314 TGTCACTAGTATGCCTCTACTTGAC 59.643 44.000 0.00 11.98 38.64 3.18
195 196 5.506708 TGTCACTAGTATGCCTCTACTTGA 58.493 41.667 0.00 0.18 33.96 3.02
196 197 5.836821 TGTCACTAGTATGCCTCTACTTG 57.163 43.478 0.00 0.00 33.96 3.16
197 198 6.836527 AGAATGTCACTAGTATGCCTCTACTT 59.163 38.462 0.00 0.00 33.96 2.24
198 199 6.264292 CAGAATGTCACTAGTATGCCTCTACT 59.736 42.308 0.00 0.00 36.04 2.57
200 201 6.641169 CAGAATGTCACTAGTATGCCTCTA 57.359 41.667 0.00 0.00 0.00 2.43
201 202 5.528043 CAGAATGTCACTAGTATGCCTCT 57.472 43.478 0.00 0.00 0.00 3.69
216 217 8.721478 GTGTGAATACATAGACAAACAGAATGT 58.279 33.333 0.00 0.00 46.47 2.71
217 218 8.720562 TGTGTGAATACATAGACAAACAGAATG 58.279 33.333 0.00 0.00 40.12 2.67
218 219 8.846943 TGTGTGAATACATAGACAAACAGAAT 57.153 30.769 0.00 0.00 39.39 2.40
219 220 8.720562 CATGTGTGAATACATAGACAAACAGAA 58.279 33.333 0.00 0.00 39.17 3.02
220 221 7.877612 ACATGTGTGAATACATAGACAAACAGA 59.122 33.333 0.00 0.00 39.17 3.41
222 223 7.977789 ACATGTGTGAATACATAGACAAACA 57.022 32.000 0.00 0.00 39.17 2.83
223 224 9.151471 AGTACATGTGTGAATACATAGACAAAC 57.849 33.333 9.11 0.00 39.17 2.93
232 233 8.705134 CGAAAACTTAGTACATGTGTGAATACA 58.295 33.333 9.11 0.00 34.63 2.29
233 234 8.166706 CCGAAAACTTAGTACATGTGTGAATAC 58.833 37.037 9.11 0.00 0.00 1.89
234 235 7.874016 ACCGAAAACTTAGTACATGTGTGAATA 59.126 33.333 9.11 0.00 0.00 1.75
235 236 6.708949 ACCGAAAACTTAGTACATGTGTGAAT 59.291 34.615 9.11 0.00 0.00 2.57
236 237 6.050432 ACCGAAAACTTAGTACATGTGTGAA 58.950 36.000 9.11 0.00 0.00 3.18
237 238 5.603596 ACCGAAAACTTAGTACATGTGTGA 58.396 37.500 9.11 0.00 0.00 3.58
239 240 8.611654 ATTAACCGAAAACTTAGTACATGTGT 57.388 30.769 9.11 0.00 0.00 3.72
241 242 9.709495 TGTATTAACCGAAAACTTAGTACATGT 57.291 29.630 2.69 2.69 0.00 3.21
332 333 5.934781 AGTTGAAGGAAATATGCCCTAGAG 58.065 41.667 0.00 0.00 31.36 2.43
333 334 5.975988 AGTTGAAGGAAATATGCCCTAGA 57.024 39.130 0.00 0.00 31.36 2.43
334 335 7.093771 ACAAAAGTTGAAGGAAATATGCCCTAG 60.094 37.037 0.00 0.00 31.36 3.02
340 341 8.661352 AAACCACAAAAGTTGAAGGAAATATG 57.339 30.769 9.90 0.00 34.85 1.78
341 342 9.679661 AAAAACCACAAAAGTTGAAGGAAATAT 57.320 25.926 9.90 0.00 34.85 1.28
369 370 3.008594 ACAACTATTGGGACGATGTTCCA 59.991 43.478 0.00 0.00 39.83 3.53
370 371 3.374058 CACAACTATTGGGACGATGTTCC 59.626 47.826 0.00 0.00 35.62 3.62
371 372 3.181510 GCACAACTATTGGGACGATGTTC 60.182 47.826 0.00 0.00 35.62 3.18
372 373 2.747446 GCACAACTATTGGGACGATGTT 59.253 45.455 0.00 0.00 35.62 2.71
373 374 2.027192 AGCACAACTATTGGGACGATGT 60.027 45.455 0.00 0.00 35.62 3.06
375 376 3.270877 GAAGCACAACTATTGGGACGAT 58.729 45.455 0.00 0.00 35.62 3.73
377 378 1.737793 GGAAGCACAACTATTGGGACG 59.262 52.381 0.00 0.00 35.62 4.79
378 379 3.073274 AGGAAGCACAACTATTGGGAC 57.927 47.619 0.00 0.00 35.62 4.46
379 380 3.181434 ACAAGGAAGCACAACTATTGGGA 60.181 43.478 0.00 0.00 35.62 4.37
381 382 7.807977 ATATACAAGGAAGCACAACTATTGG 57.192 36.000 0.00 0.00 34.12 3.16
385 386 9.636789 TCTAGTATATACAAGGAAGCACAACTA 57.363 33.333 15.18 0.00 0.00 2.24
410 411 8.976986 ACTAGAACATGCATGAGAAATTTTTC 57.023 30.769 32.75 20.98 37.45 2.29
411 412 9.846248 GTACTAGAACATGCATGAGAAATTTTT 57.154 29.630 32.75 13.81 0.00 1.94
412 413 9.013229 TGTACTAGAACATGCATGAGAAATTTT 57.987 29.630 32.75 14.56 0.00 1.82
413 414 8.565896 TGTACTAGAACATGCATGAGAAATTT 57.434 30.769 32.75 15.31 0.00 1.82
414 415 8.743085 ATGTACTAGAACATGCATGAGAAATT 57.257 30.769 32.75 16.06 38.65 1.82
426 427 6.716934 AATCTCGGACATGTACTAGAACAT 57.283 37.500 15.69 3.72 40.75 2.71
427 428 6.525578 AAATCTCGGACATGTACTAGAACA 57.474 37.500 15.69 0.00 0.00 3.18
429 430 6.832384 AGGTAAATCTCGGACATGTACTAGAA 59.168 38.462 15.69 0.00 0.00 2.10
430 431 6.363065 AGGTAAATCTCGGACATGTACTAGA 58.637 40.000 14.25 14.25 0.00 2.43
432 433 6.488006 GGTAGGTAAATCTCGGACATGTACTA 59.512 42.308 6.49 0.00 0.00 1.82
434 435 5.068198 TGGTAGGTAAATCTCGGACATGTAC 59.932 44.000 0.00 0.00 0.00 2.90
435 436 5.202765 TGGTAGGTAAATCTCGGACATGTA 58.797 41.667 0.00 0.00 0.00 2.29
436 437 4.028131 TGGTAGGTAAATCTCGGACATGT 58.972 43.478 0.00 0.00 0.00 3.21
437 438 4.665833 TGGTAGGTAAATCTCGGACATG 57.334 45.455 0.00 0.00 0.00 3.21
438 439 7.234782 TGAATATGGTAGGTAAATCTCGGACAT 59.765 37.037 0.00 0.00 0.00 3.06
439 440 6.551975 TGAATATGGTAGGTAAATCTCGGACA 59.448 38.462 0.00 0.00 0.00 4.02
440 441 6.989659 TGAATATGGTAGGTAAATCTCGGAC 58.010 40.000 0.00 0.00 0.00 4.79
441 442 7.234782 ACATGAATATGGTAGGTAAATCTCGGA 59.765 37.037 0.00 0.00 38.66 4.55
442 443 7.331934 CACATGAATATGGTAGGTAAATCTCGG 59.668 40.741 0.00 0.00 38.66 4.63
447 448 9.866655 ACAATCACATGAATATGGTAGGTAAAT 57.133 29.630 0.00 0.00 38.66 1.40
448 449 9.119418 CACAATCACATGAATATGGTAGGTAAA 57.881 33.333 0.00 0.00 38.66 2.01
449 450 8.271458 ACACAATCACATGAATATGGTAGGTAA 58.729 33.333 0.00 0.00 38.66 2.85
451 452 6.662755 ACACAATCACATGAATATGGTAGGT 58.337 36.000 0.00 0.00 38.66 3.08
488 489 8.060075 TGGGACGGAGGGAATAATTTATAAAAA 58.940 33.333 1.21 0.00 0.00 1.94
490 491 7.151694 TGGGACGGAGGGAATAATTTATAAA 57.848 36.000 0.00 0.00 0.00 1.40
491 492 6.766997 TGGGACGGAGGGAATAATTTATAA 57.233 37.500 0.00 0.00 0.00 0.98
492 493 6.963117 ATGGGACGGAGGGAATAATTTATA 57.037 37.500 0.00 0.00 0.00 0.98
493 494 5.860648 ATGGGACGGAGGGAATAATTTAT 57.139 39.130 0.00 0.00 0.00 1.40
496 497 5.860648 ATTATGGGACGGAGGGAATAATT 57.139 39.130 0.00 0.00 0.00 1.40
498 499 7.902401 TCTTATATTATGGGACGGAGGGAATAA 59.098 37.037 0.00 0.00 0.00 1.40
499 500 7.424172 TCTTATATTATGGGACGGAGGGAATA 58.576 38.462 0.00 0.00 0.00 1.75
500 501 6.269194 TCTTATATTATGGGACGGAGGGAAT 58.731 40.000 0.00 0.00 0.00 3.01
501 502 5.657446 TCTTATATTATGGGACGGAGGGAA 58.343 41.667 0.00 0.00 0.00 3.97
502 503 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
503 504 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
504 505 4.712337 AGCTCTTATATTATGGGACGGAGG 59.288 45.833 0.00 0.00 0.00 4.30
505 506 5.923733 AGCTCTTATATTATGGGACGGAG 57.076 43.478 0.00 0.00 0.00 4.63
506 507 6.377429 CACTAGCTCTTATATTATGGGACGGA 59.623 42.308 0.00 0.00 0.00 4.69
508 509 7.094334 TGACACTAGCTCTTATATTATGGGACG 60.094 40.741 0.00 0.00 0.00 4.79
509 510 8.123639 TGACACTAGCTCTTATATTATGGGAC 57.876 38.462 0.00 0.00 0.00 4.46
510 511 8.721133 TTGACACTAGCTCTTATATTATGGGA 57.279 34.615 0.00 0.00 0.00 4.37
515 516 8.814235 GCGTTTTTGACACTAGCTCTTATATTA 58.186 33.333 0.00 0.00 0.00 0.98
516 517 7.549488 AGCGTTTTTGACACTAGCTCTTATATT 59.451 33.333 0.00 0.00 0.00 1.28
517 518 7.042335 AGCGTTTTTGACACTAGCTCTTATAT 58.958 34.615 0.00 0.00 0.00 0.86
518 519 6.395629 AGCGTTTTTGACACTAGCTCTTATA 58.604 36.000 0.00 0.00 0.00 0.98
520 521 4.628074 AGCGTTTTTGACACTAGCTCTTA 58.372 39.130 0.00 0.00 0.00 2.10
521 522 3.467803 AGCGTTTTTGACACTAGCTCTT 58.532 40.909 0.00 0.00 0.00 2.85
522 523 3.060602 GAGCGTTTTTGACACTAGCTCT 58.939 45.455 7.22 0.00 44.18 4.09
523 524 3.060602 AGAGCGTTTTTGACACTAGCTC 58.939 45.455 6.45 6.45 46.87 4.09
524 525 3.113260 AGAGCGTTTTTGACACTAGCT 57.887 42.857 0.00 0.00 36.06 3.32
526 527 5.900339 TGTAAGAGCGTTTTTGACACTAG 57.100 39.130 0.00 0.00 0.00 2.57
527 528 6.854496 AATGTAAGAGCGTTTTTGACACTA 57.146 33.333 0.00 0.00 0.00 2.74
528 529 5.751243 AATGTAAGAGCGTTTTTGACACT 57.249 34.783 0.00 0.00 0.00 3.55
529 530 6.523201 CCATAATGTAAGAGCGTTTTTGACAC 59.477 38.462 0.00 0.00 0.00 3.67
530 531 6.348950 CCCATAATGTAAGAGCGTTTTTGACA 60.349 38.462 0.00 0.00 0.00 3.58
533 534 6.027749 GTCCCATAATGTAAGAGCGTTTTTG 58.972 40.000 0.00 0.00 0.00 2.44
534 535 5.708230 TGTCCCATAATGTAAGAGCGTTTTT 59.292 36.000 0.00 0.00 0.00 1.94
535 536 5.250200 TGTCCCATAATGTAAGAGCGTTTT 58.750 37.500 0.00 0.00 0.00 2.43
536 537 4.839121 TGTCCCATAATGTAAGAGCGTTT 58.161 39.130 0.00 0.00 0.00 3.60
537 538 4.481368 TGTCCCATAATGTAAGAGCGTT 57.519 40.909 0.00 0.00 0.00 4.84
538 539 4.481368 TTGTCCCATAATGTAAGAGCGT 57.519 40.909 0.00 0.00 0.00 5.07
539 540 4.273480 CCTTTGTCCCATAATGTAAGAGCG 59.727 45.833 0.00 0.00 0.00 5.03
540 541 4.580580 CCCTTTGTCCCATAATGTAAGAGC 59.419 45.833 0.00 0.00 0.00 4.09
541 542 6.001449 TCCCTTTGTCCCATAATGTAAGAG 57.999 41.667 0.00 0.00 0.00 2.85
542 543 5.491078 ACTCCCTTTGTCCCATAATGTAAGA 59.509 40.000 0.00 0.00 0.00 2.10
544 545 5.789574 ACTCCCTTTGTCCCATAATGTAA 57.210 39.130 0.00 0.00 0.00 2.41
545 546 7.460214 AATACTCCCTTTGTCCCATAATGTA 57.540 36.000 0.00 0.00 0.00 2.29
546 547 5.994416 ATACTCCCTTTGTCCCATAATGT 57.006 39.130 0.00 0.00 0.00 2.71
547 548 6.040842 CCAAATACTCCCTTTGTCCCATAATG 59.959 42.308 0.00 0.00 32.83 1.90
548 549 6.136155 CCAAATACTCCCTTTGTCCCATAAT 58.864 40.000 0.00 0.00 32.83 1.28
549 550 5.015817 ACCAAATACTCCCTTTGTCCCATAA 59.984 40.000 0.00 0.00 32.83 1.90
550 551 4.542525 ACCAAATACTCCCTTTGTCCCATA 59.457 41.667 0.00 0.00 32.83 2.74
551 552 3.336694 ACCAAATACTCCCTTTGTCCCAT 59.663 43.478 0.00 0.00 32.83 4.00
552 553 2.719705 ACCAAATACTCCCTTTGTCCCA 59.280 45.455 0.00 0.00 32.83 4.37
554 555 5.771165 TGTTTACCAAATACTCCCTTTGTCC 59.229 40.000 0.00 0.00 32.83 4.02
556 557 6.370453 AGTGTTTACCAAATACTCCCTTTGT 58.630 36.000 0.00 0.00 38.25 2.83
557 558 6.894339 AGTGTTTACCAAATACTCCCTTTG 57.106 37.500 0.00 0.00 38.25 2.77
558 559 9.596308 AATAAGTGTTTACCAAATACTCCCTTT 57.404 29.630 2.16 0.00 41.22 3.11
559 560 9.020731 CAATAAGTGTTTACCAAATACTCCCTT 57.979 33.333 2.16 0.00 41.22 3.95
560 561 7.614192 CCAATAAGTGTTTACCAAATACTCCCT 59.386 37.037 2.16 0.00 41.22 4.20
561 562 7.629866 GCCAATAAGTGTTTACCAAATACTCCC 60.630 40.741 2.16 0.00 41.22 4.30
563 564 8.051901 AGCCAATAAGTGTTTACCAAATACTC 57.948 34.615 2.16 0.00 41.22 2.59
564 565 8.417273 AAGCCAATAAGTGTTTACCAAATACT 57.583 30.769 0.00 0.00 43.48 2.12
643 644 1.795872 CACATCGACCACAGCGTTAAA 59.204 47.619 0.00 0.00 0.00 1.52
650 651 0.737367 ATGCGTCACATCGACCACAG 60.737 55.000 0.00 0.00 42.07 3.66
917 922 1.228894 AGTGTGAGGAGGGAAGCGA 60.229 57.895 0.00 0.00 0.00 4.93
950 955 3.821033 GCCTAGAGGTTTTTGCTCTTTGA 59.179 43.478 0.00 0.00 37.57 2.69
951 956 3.823304 AGCCTAGAGGTTTTTGCTCTTTG 59.177 43.478 0.00 0.00 37.57 2.77
952 957 4.075682 GAGCCTAGAGGTTTTTGCTCTTT 58.924 43.478 0.00 0.00 41.43 2.52
967 972 1.950909 CGAGGTGGTTAGAGAGCCTAG 59.049 57.143 0.00 0.00 0.00 3.02
976 981 1.944676 GCGCGATCGAGGTGGTTAG 60.945 63.158 21.57 0.00 38.10 2.34
1772 4315 0.958091 CACAATCGCCAAGAAACCCA 59.042 50.000 0.00 0.00 0.00 4.51
1858 4401 3.802948 ATACATCCGTGTCCAAGAGAC 57.197 47.619 0.00 0.00 46.51 3.36
1908 4451 6.587608 GCAATCACTTTTATTTCAACCCAGAG 59.412 38.462 0.00 0.00 0.00 3.35
1996 4549 8.108551 TGCTTAAAAATTAAATGCAAGCCATT 57.891 26.923 0.00 0.00 45.90 3.16
1997 4550 7.684937 TGCTTAAAAATTAAATGCAAGCCAT 57.315 28.000 0.00 0.00 36.86 4.40
2072 4973 2.083774 GCAAGATCGGATCACCACAAA 58.916 47.619 19.47 0.00 35.59 2.83
2186 5087 0.976641 TGTAGCAACCTGACCTCCAG 59.023 55.000 0.00 0.00 42.55 3.86
2187 5088 1.656587 ATGTAGCAACCTGACCTCCA 58.343 50.000 0.00 0.00 0.00 3.86
2188 5089 3.906720 TTATGTAGCAACCTGACCTCC 57.093 47.619 0.00 0.00 0.00 4.30
2189 5090 7.048512 AGTTTATTATGTAGCAACCTGACCTC 58.951 38.462 0.00 0.00 0.00 3.85
2190 5091 6.958767 AGTTTATTATGTAGCAACCTGACCT 58.041 36.000 0.00 0.00 0.00 3.85
2191 5092 7.335924 TCAAGTTTATTATGTAGCAACCTGACC 59.664 37.037 0.00 0.00 0.00 4.02
2192 5093 8.263940 TCAAGTTTATTATGTAGCAACCTGAC 57.736 34.615 0.00 0.00 0.00 3.51
2193 5094 8.726988 GTTCAAGTTTATTATGTAGCAACCTGA 58.273 33.333 0.00 0.00 0.00 3.86
2194 5095 8.511321 TGTTCAAGTTTATTATGTAGCAACCTG 58.489 33.333 0.00 0.00 0.00 4.00
2195 5096 8.630054 TGTTCAAGTTTATTATGTAGCAACCT 57.370 30.769 0.00 0.00 0.00 3.50
2196 5097 9.685828 TTTGTTCAAGTTTATTATGTAGCAACC 57.314 29.630 0.00 0.00 0.00 3.77
2217 5118 6.096673 ACCTCGAATAGCCAAATTTTTGTT 57.903 33.333 2.63 0.00 36.45 2.83
2221 5122 7.201705 GCTAACTACCTCGAATAGCCAAATTTT 60.202 37.037 3.78 0.00 34.35 1.82
2474 5377 7.027874 TCAGGTCTTGGATGTTAGGTTTAAT 57.972 36.000 0.00 0.00 0.00 1.40
2475 5378 6.442541 TCAGGTCTTGGATGTTAGGTTTAA 57.557 37.500 0.00 0.00 0.00 1.52
2476 5379 5.045869 CCTCAGGTCTTGGATGTTAGGTTTA 60.046 44.000 0.00 0.00 0.00 2.01
2489 5392 0.543749 GGATGGGTCCTCAGGTCTTG 59.456 60.000 0.00 0.00 41.60 3.02
2571 5474 1.377202 GAAGATGGAGCGGTGGCAA 60.377 57.895 0.00 0.00 43.41 4.52
2594 5497 3.191162 GCAAGGTTGATGCATCAGTACAA 59.809 43.478 27.25 11.51 43.29 2.41
2625 5528 0.597637 GTGGTGGCGTCGATGATAGG 60.598 60.000 9.31 0.00 0.00 2.57
2741 5644 2.564771 CAAAGACCTCAAGCTGTGTCA 58.435 47.619 0.00 0.00 0.00 3.58
2754 5657 2.996621 CACGACAGATTCTCCAAAGACC 59.003 50.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.