Multiple sequence alignment - TraesCS5D01G283800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G283800 chr5D 100.000 3564 0 0 1 3564 384630788 384627225 0.000000e+00 6582.0
1 TraesCS5D01G283800 chr5D 87.665 681 82 2 1886 2565 384479038 384478359 0.000000e+00 791.0
2 TraesCS5D01G283800 chr5D 88.831 573 61 3 981 1550 384480412 384479840 0.000000e+00 701.0
3 TraesCS5D01G283800 chr5D 93.301 209 11 1 1 209 292679896 292680101 4.470000e-79 305.0
4 TraesCS5D01G283800 chr5B 92.846 2530 115 26 865 3359 461405381 461402883 0.000000e+00 3609.0
5 TraesCS5D01G283800 chr5B 87.727 717 85 2 1862 2575 461304189 461303473 0.000000e+00 833.0
6 TraesCS5D01G283800 chr5B 85.938 704 91 7 1862 2558 461545102 461544400 0.000000e+00 745.0
7 TraesCS5D01G283800 chr5B 87.840 625 65 8 946 1562 461491961 461491340 0.000000e+00 723.0
8 TraesCS5D01G283800 chr5B 88.176 592 66 4 962 1550 461305560 461304970 0.000000e+00 702.0
9 TraesCS5D01G283800 chr5B 89.873 474 48 0 1863 2336 461491243 461490770 8.460000e-171 610.0
10 TraesCS5D01G283800 chr5B 88.386 508 56 1 1028 1535 461545927 461545423 3.040000e-170 608.0
11 TraesCS5D01G283800 chr5A 94.726 1896 70 12 865 2744 485408951 485407070 0.000000e+00 2920.0
12 TraesCS5D01G283800 chr5A 87.776 679 83 0 1887 2565 485387040 485386362 0.000000e+00 795.0
13 TraesCS5D01G283800 chr5A 85.417 720 93 11 1862 2572 485469163 485468447 0.000000e+00 737.0
14 TraesCS5D01G283800 chr5A 88.246 570 67 0 981 1550 485388369 485387800 0.000000e+00 682.0
15 TraesCS5D01G283800 chr5A 93.088 434 20 7 2781 3208 485407075 485406646 8.400000e-176 627.0
16 TraesCS5D01G283800 chr5A 85.637 557 58 8 996 1546 485469758 485469218 1.860000e-157 566.0
17 TraesCS5D01G283800 chr5A 87.798 336 35 5 3213 3542 485406611 485406276 4.310000e-104 388.0
18 TraesCS5D01G283800 chr5A 83.453 417 30 13 429 831 485409350 485408959 5.660000e-93 351.0
19 TraesCS5D01G283800 chr7A 90.566 212 18 2 1 210 62730449 62730660 2.710000e-71 279.0
20 TraesCS5D01G283800 chr4D 90.431 209 17 3 1 207 391053584 391053791 4.530000e-69 272.0
21 TraesCS5D01G283800 chr2A 89.252 214 19 3 1 213 475141435 475141645 7.590000e-67 265.0
22 TraesCS5D01G283800 chr3B 85.465 172 19 6 42 209 145368601 145368432 1.320000e-39 174.0
23 TraesCS5D01G283800 chr3B 83.030 165 23 4 51 213 804671897 804671736 1.030000e-30 145.0
24 TraesCS5D01G283800 chr3B 93.023 43 3 0 3491 3533 787838441 787838399 2.970000e-06 63.9
25 TraesCS5D01G283800 chr3D 83.735 166 20 6 51 213 598013796 598013635 2.220000e-32 150.0
26 TraesCS5D01G283800 chr3D 89.091 55 5 1 3491 3545 607904837 607904890 2.300000e-07 67.6
27 TraesCS5D01G283800 chr3D 85.185 54 8 0 3491 3544 416210046 416209993 4.970000e-04 56.5
28 TraesCS5D01G283800 chr1A 86.822 129 16 1 83 210 10852346 10852218 3.710000e-30 143.0
29 TraesCS5D01G283800 chr1A 86.822 129 16 1 83 210 10907413 10907285 3.710000e-30 143.0
30 TraesCS5D01G283800 chr7B 91.379 58 5 0 3488 3545 732154136 732154193 2.950000e-11 80.5
31 TraesCS5D01G283800 chr7B 91.228 57 5 0 3488 3544 732196012 732196068 1.060000e-10 78.7
32 TraesCS5D01G283800 chr4A 96.774 31 1 0 3488 3518 429234986 429235016 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G283800 chr5D 384627225 384630788 3563 True 6582.0 6582 100.00000 1 3564 1 chr5D.!!$R1 3563
1 TraesCS5D01G283800 chr5D 384478359 384480412 2053 True 746.0 791 88.24800 981 2565 2 chr5D.!!$R2 1584
2 TraesCS5D01G283800 chr5B 461402883 461405381 2498 True 3609.0 3609 92.84600 865 3359 1 chr5B.!!$R1 2494
3 TraesCS5D01G283800 chr5B 461303473 461305560 2087 True 767.5 833 87.95150 962 2575 2 chr5B.!!$R2 1613
4 TraesCS5D01G283800 chr5B 461544400 461545927 1527 True 676.5 745 87.16200 1028 2558 2 chr5B.!!$R4 1530
5 TraesCS5D01G283800 chr5B 461490770 461491961 1191 True 666.5 723 88.85650 946 2336 2 chr5B.!!$R3 1390
6 TraesCS5D01G283800 chr5A 485406276 485409350 3074 True 1071.5 2920 89.76625 429 3542 4 chr5A.!!$R2 3113
7 TraesCS5D01G283800 chr5A 485386362 485388369 2007 True 738.5 795 88.01100 981 2565 2 chr5A.!!$R1 1584
8 TraesCS5D01G283800 chr5A 485468447 485469758 1311 True 651.5 737 85.52700 996 2572 2 chr5A.!!$R3 1576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
296 297 0.034337 GGTCCGCTTGGTTGTAGTCA 59.966 55.0 0.0 0.0 0.00 3.41 F
299 300 0.034896 CCGCTTGGTTGTAGTCAGGT 59.965 55.0 0.0 0.0 0.00 4.00 F
333 334 0.036306 ATTTTTCCTCGGTGCTCGGT 59.964 50.0 0.7 0.0 39.77 4.69 F
343 344 0.249911 GGTGCTCGGTGACTGAAACT 60.250 55.0 0.0 0.0 0.00 2.66 F
1979 2619 0.250467 GAGCAAGCTGGTGAAGTCCA 60.250 55.0 0.0 0.0 36.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 1897 1.345741 ACACTGCAGCTACATGTGACT 59.654 47.619 15.27 2.27 33.41 3.41 R
1752 2095 1.540267 ACGGAGTACACTACACTGCAG 59.460 52.381 13.48 13.48 41.94 4.41 R
2257 2909 2.177580 CACGACGCCCGGCATAAAT 61.178 57.895 10.77 0.00 43.93 1.40 R
2548 3200 1.531840 ACCTCAGTGACTCGTGGCT 60.532 57.895 0.00 0.00 0.00 4.75 R
3276 3977 0.033503 TGACCGCATGAGGAGTAGGA 60.034 55.000 23.45 0.00 34.73 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.050703 GTACAGGCTGATGTGACGG 57.949 57.895 23.66 0.00 34.56 4.79
19 20 0.246635 GTACAGGCTGATGTGACGGT 59.753 55.000 23.66 0.00 34.56 4.83
20 21 0.530744 TACAGGCTGATGTGACGGTC 59.469 55.000 23.66 0.00 34.56 4.79
21 22 1.448540 CAGGCTGATGTGACGGTCC 60.449 63.158 9.42 0.00 0.00 4.46
22 23 1.913262 AGGCTGATGTGACGGTCCA 60.913 57.895 5.55 3.82 0.00 4.02
23 24 1.448540 GGCTGATGTGACGGTCCAG 60.449 63.158 5.55 6.71 0.00 3.86
24 25 2.103042 GCTGATGTGACGGTCCAGC 61.103 63.158 17.25 17.25 42.52 4.85
25 26 1.448540 CTGATGTGACGGTCCAGCC 60.449 63.158 5.55 1.42 0.00 4.85
26 27 1.892819 CTGATGTGACGGTCCAGCCT 61.893 60.000 5.55 0.00 34.25 4.58
27 28 1.448540 GATGTGACGGTCCAGCCTG 60.449 63.158 5.55 0.00 34.25 4.85
28 29 2.172483 GATGTGACGGTCCAGCCTGT 62.172 60.000 5.55 0.00 34.25 4.00
29 30 0.902984 ATGTGACGGTCCAGCCTGTA 60.903 55.000 5.55 0.00 34.25 2.74
30 31 1.080025 GTGACGGTCCAGCCTGTAC 60.080 63.158 5.55 0.00 34.25 2.90
31 32 2.181021 GACGGTCCAGCCTGTACG 59.819 66.667 0.00 0.00 34.25 3.67
32 33 2.282674 ACGGTCCAGCCTGTACGA 60.283 61.111 6.88 0.00 34.25 3.43
33 34 1.664321 GACGGTCCAGCCTGTACGAT 61.664 60.000 6.88 0.00 34.25 3.73
34 35 1.226974 CGGTCCAGCCTGTACGATG 60.227 63.158 0.00 0.00 34.25 3.84
35 36 1.898154 GGTCCAGCCTGTACGATGT 59.102 57.895 0.00 0.00 0.00 3.06
36 37 1.108776 GGTCCAGCCTGTACGATGTA 58.891 55.000 0.00 0.00 0.00 2.29
37 38 1.687123 GGTCCAGCCTGTACGATGTAT 59.313 52.381 0.00 0.00 0.00 2.29
38 39 2.288273 GGTCCAGCCTGTACGATGTATC 60.288 54.545 0.00 0.00 0.00 2.24
39 40 2.623889 GTCCAGCCTGTACGATGTATCT 59.376 50.000 0.00 0.00 0.00 1.98
40 41 2.623416 TCCAGCCTGTACGATGTATCTG 59.377 50.000 0.00 0.00 0.00 2.90
41 42 2.288457 CCAGCCTGTACGATGTATCTGG 60.288 54.545 0.00 0.00 34.64 3.86
42 43 2.362397 CAGCCTGTACGATGTATCTGGT 59.638 50.000 0.00 0.00 0.00 4.00
43 44 3.031736 AGCCTGTACGATGTATCTGGTT 58.968 45.455 0.00 0.00 0.00 3.67
44 45 3.451178 AGCCTGTACGATGTATCTGGTTT 59.549 43.478 0.00 0.00 0.00 3.27
45 46 4.081087 AGCCTGTACGATGTATCTGGTTTT 60.081 41.667 0.00 0.00 0.00 2.43
46 47 5.128171 AGCCTGTACGATGTATCTGGTTTTA 59.872 40.000 0.00 0.00 0.00 1.52
47 48 5.462398 GCCTGTACGATGTATCTGGTTTTAG 59.538 44.000 0.00 0.00 0.00 1.85
48 49 6.570692 CCTGTACGATGTATCTGGTTTTAGT 58.429 40.000 0.00 0.00 0.00 2.24
49 50 6.696148 CCTGTACGATGTATCTGGTTTTAGTC 59.304 42.308 0.00 0.00 0.00 2.59
50 51 7.160547 TGTACGATGTATCTGGTTTTAGTCA 57.839 36.000 0.00 0.00 0.00 3.41
51 52 7.604549 TGTACGATGTATCTGGTTTTAGTCAA 58.395 34.615 0.00 0.00 0.00 3.18
52 53 8.089597 TGTACGATGTATCTGGTTTTAGTCAAA 58.910 33.333 0.00 0.00 0.00 2.69
53 54 7.972832 ACGATGTATCTGGTTTTAGTCAAAA 57.027 32.000 0.00 0.00 0.00 2.44
63 64 4.594136 GTTTTAGTCAAAACCACTCCACG 58.406 43.478 2.30 0.00 45.15 4.94
64 65 3.547054 TTAGTCAAAACCACTCCACGT 57.453 42.857 0.00 0.00 0.00 4.49
65 66 1.949465 AGTCAAAACCACTCCACGTC 58.051 50.000 0.00 0.00 0.00 4.34
66 67 0.580104 GTCAAAACCACTCCACGTCG 59.420 55.000 0.00 0.00 0.00 5.12
67 68 0.531090 TCAAAACCACTCCACGTCGG 60.531 55.000 0.00 0.00 0.00 4.79
68 69 0.531090 CAAAACCACTCCACGTCGGA 60.531 55.000 0.00 6.57 43.61 4.55
69 70 0.178533 AAAACCACTCCACGTCGGAA 59.821 50.000 7.90 0.00 45.75 4.30
70 71 0.178533 AAACCACTCCACGTCGGAAA 59.821 50.000 7.90 0.00 45.75 3.13
71 72 0.178533 AACCACTCCACGTCGGAAAA 59.821 50.000 7.90 0.00 45.75 2.29
72 73 0.178533 ACCACTCCACGTCGGAAAAA 59.821 50.000 7.90 0.00 45.75 1.94
95 96 3.006672 CTGCCAAAGCGGTATAGGG 57.993 57.895 0.00 0.00 44.31 3.53
96 97 0.468226 CTGCCAAAGCGGTATAGGGA 59.532 55.000 0.00 0.00 44.31 4.20
97 98 0.179468 TGCCAAAGCGGTATAGGGAC 59.821 55.000 0.00 0.00 44.31 4.46
98 99 0.468648 GCCAAAGCGGTATAGGGACT 59.531 55.000 0.00 0.00 39.19 3.85
99 100 1.690352 GCCAAAGCGGTATAGGGACTA 59.310 52.381 0.00 0.00 41.14 2.59
100 101 2.103601 GCCAAAGCGGTATAGGGACTAA 59.896 50.000 0.00 0.00 40.48 2.24
101 102 3.432608 GCCAAAGCGGTATAGGGACTAAA 60.433 47.826 0.00 0.00 40.48 1.85
102 103 5.509469 GCCAAAGCGGTATAGGGACTAAAC 61.509 50.000 0.00 0.00 40.48 2.01
103 104 7.653482 GCCAAAGCGGTATAGGGACTAAACT 62.653 48.000 0.00 0.00 40.48 2.66
105 106 9.726794 GCCAAAGCGGTATAGGGACTAAACTTA 62.727 44.444 0.00 0.00 40.48 2.24
115 116 6.697641 AGGGACTAAACTTATCTGGTTTGA 57.302 37.500 0.00 0.00 36.02 2.69
116 117 7.086685 AGGGACTAAACTTATCTGGTTTGAA 57.913 36.000 0.00 0.00 36.02 2.69
117 118 7.699878 AGGGACTAAACTTATCTGGTTTGAAT 58.300 34.615 0.00 0.00 36.02 2.57
118 119 8.832735 AGGGACTAAACTTATCTGGTTTGAATA 58.167 33.333 0.00 0.00 36.02 1.75
119 120 9.110502 GGGACTAAACTTATCTGGTTTGAATAG 57.889 37.037 0.00 0.00 37.45 1.73
120 121 9.668497 GGACTAAACTTATCTGGTTTGAATAGT 57.332 33.333 0.00 0.00 37.45 2.12
142 143 7.597288 AGTTAAGGAACTAAATTTTGCTGGT 57.403 32.000 0.00 0.00 44.36 4.00
143 144 8.018537 AGTTAAGGAACTAAATTTTGCTGGTT 57.981 30.769 0.00 0.00 44.36 3.67
144 145 8.482943 AGTTAAGGAACTAAATTTTGCTGGTTT 58.517 29.630 0.00 0.00 44.36 3.27
145 146 9.104965 GTTAAGGAACTAAATTTTGCTGGTTTT 57.895 29.630 0.00 0.00 38.49 2.43
147 148 8.657074 AAGGAACTAAATTTTGCTGGTTTTAC 57.343 30.769 0.00 0.00 38.49 2.01
148 149 7.787028 AGGAACTAAATTTTGCTGGTTTTACA 58.213 30.769 0.00 0.00 36.02 2.41
149 150 7.926018 AGGAACTAAATTTTGCTGGTTTTACAG 59.074 33.333 0.00 0.00 38.20 2.74
150 151 7.709182 GGAACTAAATTTTGCTGGTTTTACAGT 59.291 33.333 0.00 0.00 40.59 3.55
151 152 9.093970 GAACTAAATTTTGCTGGTTTTACAGTT 57.906 29.630 0.00 0.00 40.59 3.16
155 156 8.432110 AAATTTTGCTGGTTTTACAGTTAAGG 57.568 30.769 0.00 0.00 40.59 2.69
156 157 5.523438 TTTGCTGGTTTTACAGTTAAGGG 57.477 39.130 0.00 0.00 40.59 3.95
157 158 4.440826 TGCTGGTTTTACAGTTAAGGGA 57.559 40.909 0.00 0.00 40.59 4.20
158 159 4.993028 TGCTGGTTTTACAGTTAAGGGAT 58.007 39.130 0.00 0.00 40.59 3.85
159 160 5.007682 TGCTGGTTTTACAGTTAAGGGATC 58.992 41.667 0.00 0.00 40.59 3.36
160 161 5.007682 GCTGGTTTTACAGTTAAGGGATCA 58.992 41.667 0.00 0.00 40.59 2.92
161 162 5.652452 GCTGGTTTTACAGTTAAGGGATCAT 59.348 40.000 0.00 0.00 40.59 2.45
162 163 6.152831 GCTGGTTTTACAGTTAAGGGATCATT 59.847 38.462 0.00 0.00 40.59 2.57
163 164 7.309805 GCTGGTTTTACAGTTAAGGGATCATTT 60.310 37.037 0.00 0.00 40.59 2.32
164 165 8.117813 TGGTTTTACAGTTAAGGGATCATTTC 57.882 34.615 0.00 0.00 0.00 2.17
165 166 7.947890 TGGTTTTACAGTTAAGGGATCATTTCT 59.052 33.333 0.00 0.00 0.00 2.52
166 167 9.457436 GGTTTTACAGTTAAGGGATCATTTCTA 57.543 33.333 0.00 0.00 0.00 2.10
172 173 9.440761 ACAGTTAAGGGATCATTTCTATACTCT 57.559 33.333 0.00 0.00 0.00 3.24
173 174 9.921637 CAGTTAAGGGATCATTTCTATACTCTC 57.078 37.037 0.00 0.00 0.00 3.20
174 175 8.798402 AGTTAAGGGATCATTTCTATACTCTCG 58.202 37.037 0.00 0.00 0.00 4.04
175 176 8.794553 GTTAAGGGATCATTTCTATACTCTCGA 58.205 37.037 0.00 0.00 0.00 4.04
176 177 7.841282 AAGGGATCATTTCTATACTCTCGAA 57.159 36.000 0.00 0.00 0.00 3.71
177 178 7.841282 AGGGATCATTTCTATACTCTCGAAA 57.159 36.000 0.00 0.00 0.00 3.46
178 179 7.891561 AGGGATCATTTCTATACTCTCGAAAG 58.108 38.462 0.00 0.00 31.07 2.62
179 180 7.726291 AGGGATCATTTCTATACTCTCGAAAGA 59.274 37.037 0.00 0.00 39.12 2.52
193 194 4.617253 TCGAAAGAGTTGAGGGATGAAA 57.383 40.909 0.00 0.00 34.84 2.69
194 195 4.968259 TCGAAAGAGTTGAGGGATGAAAA 58.032 39.130 0.00 0.00 34.84 2.29
195 196 5.373222 TCGAAAGAGTTGAGGGATGAAAAA 58.627 37.500 0.00 0.00 34.84 1.94
196 197 6.003950 TCGAAAGAGTTGAGGGATGAAAAAT 58.996 36.000 0.00 0.00 34.84 1.82
197 198 7.165485 TCGAAAGAGTTGAGGGATGAAAAATA 58.835 34.615 0.00 0.00 34.84 1.40
198 199 7.829211 TCGAAAGAGTTGAGGGATGAAAAATAT 59.171 33.333 0.00 0.00 34.84 1.28
199 200 9.109393 CGAAAGAGTTGAGGGATGAAAAATATA 57.891 33.333 0.00 0.00 0.00 0.86
201 202 9.981460 AAAGAGTTGAGGGATGAAAAATATACT 57.019 29.630 0.00 0.00 0.00 2.12
202 203 9.981460 AAGAGTTGAGGGATGAAAAATATACTT 57.019 29.630 0.00 0.00 0.00 2.24
203 204 9.620259 AGAGTTGAGGGATGAAAAATATACTTC 57.380 33.333 0.00 0.00 0.00 3.01
204 205 9.620259 GAGTTGAGGGATGAAAAATATACTTCT 57.380 33.333 0.00 0.00 0.00 2.85
205 206 9.620259 AGTTGAGGGATGAAAAATATACTTCTC 57.380 33.333 0.00 0.00 0.00 2.87
206 207 8.841300 GTTGAGGGATGAAAAATATACTTCTCC 58.159 37.037 0.00 0.00 0.00 3.71
207 208 7.518188 TGAGGGATGAAAAATATACTTCTCCC 58.482 38.462 16.63 16.63 38.26 4.30
208 209 7.350921 TGAGGGATGAAAAATATACTTCTCCCT 59.649 37.037 21.52 21.52 43.98 4.20
209 210 8.119062 AGGGATGAAAAATATACTTCTCCCTT 57.881 34.615 18.84 11.04 41.55 3.95
210 211 8.569596 AGGGATGAAAAATATACTTCTCCCTTT 58.430 33.333 18.84 8.67 41.55 3.11
211 212 9.862149 GGGATGAAAAATATACTTCTCCCTTTA 57.138 33.333 16.85 0.00 36.77 1.85
225 226 9.516546 ACTTCTCCCTTTATTTAACTAGTTTGG 57.483 33.333 14.49 5.31 0.00 3.28
226 227 7.933215 TCTCCCTTTATTTAACTAGTTTGGC 57.067 36.000 14.49 0.00 0.00 4.52
227 228 7.696017 TCTCCCTTTATTTAACTAGTTTGGCT 58.304 34.615 14.49 0.00 0.00 4.75
228 229 7.610305 TCTCCCTTTATTTAACTAGTTTGGCTG 59.390 37.037 14.49 0.00 0.00 4.85
229 230 6.661805 TCCCTTTATTTAACTAGTTTGGCTGG 59.338 38.462 14.49 7.87 0.00 4.85
230 231 6.436218 CCCTTTATTTAACTAGTTTGGCTGGT 59.564 38.462 14.49 0.00 40.86 4.00
231 232 7.312899 CCTTTATTTAACTAGTTTGGCTGGTG 58.687 38.462 14.49 0.00 38.97 4.17
232 233 7.175990 CCTTTATTTAACTAGTTTGGCTGGTGA 59.824 37.037 14.49 0.00 38.97 4.02
233 234 7.681939 TTATTTAACTAGTTTGGCTGGTGAG 57.318 36.000 14.49 0.00 38.97 3.51
234 235 4.699925 TTAACTAGTTTGGCTGGTGAGT 57.300 40.909 14.49 0.00 38.97 3.41
235 236 2.841442 ACTAGTTTGGCTGGTGAGTC 57.159 50.000 0.00 0.00 37.53 3.36
236 237 2.047061 ACTAGTTTGGCTGGTGAGTCA 58.953 47.619 0.00 0.00 37.53 3.41
237 238 2.224305 ACTAGTTTGGCTGGTGAGTCAC 60.224 50.000 15.24 15.24 37.53 3.67
238 239 0.839946 AGTTTGGCTGGTGAGTCACT 59.160 50.000 22.18 0.00 31.94 3.41
239 240 1.212935 AGTTTGGCTGGTGAGTCACTT 59.787 47.619 22.18 0.00 31.94 3.16
240 241 1.334869 GTTTGGCTGGTGAGTCACTTG 59.665 52.381 22.18 15.50 31.94 3.16
241 242 0.836606 TTGGCTGGTGAGTCACTTGA 59.163 50.000 22.18 6.62 31.94 3.02
242 243 0.394192 TGGCTGGTGAGTCACTTGAG 59.606 55.000 22.18 15.80 34.40 3.02
243 244 0.952984 GGCTGGTGAGTCACTTGAGC 60.953 60.000 22.18 22.85 34.40 4.26
244 245 0.034616 GCTGGTGAGTCACTTGAGCT 59.965 55.000 22.18 0.00 34.40 4.09
245 246 1.938926 GCTGGTGAGTCACTTGAGCTC 60.939 57.143 22.18 6.82 34.40 4.09
246 247 0.315251 TGGTGAGTCACTTGAGCTCG 59.685 55.000 22.18 0.00 34.40 5.03
247 248 0.315568 GGTGAGTCACTTGAGCTCGT 59.684 55.000 22.18 0.00 34.40 4.18
248 249 1.540267 GGTGAGTCACTTGAGCTCGTA 59.460 52.381 22.18 0.00 34.40 3.43
249 250 2.414824 GGTGAGTCACTTGAGCTCGTAG 60.415 54.545 22.18 11.42 34.40 3.51
250 251 1.200252 TGAGTCACTTGAGCTCGTAGC 59.800 52.381 9.64 0.00 42.84 3.58
261 262 2.141535 GCTCGTAGCTTAGGTGGATG 57.858 55.000 0.00 0.00 38.45 3.51
262 263 1.681793 GCTCGTAGCTTAGGTGGATGA 59.318 52.381 0.00 0.00 38.45 2.92
263 264 2.287909 GCTCGTAGCTTAGGTGGATGAG 60.288 54.545 0.00 0.00 38.45 2.90
264 265 3.215151 CTCGTAGCTTAGGTGGATGAGA 58.785 50.000 0.00 0.00 0.00 3.27
265 266 3.823873 CTCGTAGCTTAGGTGGATGAGAT 59.176 47.826 0.00 0.00 0.00 2.75
266 267 4.981812 TCGTAGCTTAGGTGGATGAGATA 58.018 43.478 0.00 0.00 0.00 1.98
267 268 5.571285 TCGTAGCTTAGGTGGATGAGATAT 58.429 41.667 0.00 0.00 0.00 1.63
268 269 5.416013 TCGTAGCTTAGGTGGATGAGATATG 59.584 44.000 0.00 0.00 0.00 1.78
269 270 5.184096 CGTAGCTTAGGTGGATGAGATATGT 59.816 44.000 0.00 0.00 0.00 2.29
270 271 6.374613 CGTAGCTTAGGTGGATGAGATATGTA 59.625 42.308 0.00 0.00 0.00 2.29
271 272 7.094334 CGTAGCTTAGGTGGATGAGATATGTAA 60.094 40.741 0.00 0.00 0.00 2.41
272 273 7.805083 AGCTTAGGTGGATGAGATATGTAAT 57.195 36.000 0.00 0.00 0.00 1.89
273 274 8.901472 AGCTTAGGTGGATGAGATATGTAATA 57.099 34.615 0.00 0.00 0.00 0.98
274 275 9.499369 AGCTTAGGTGGATGAGATATGTAATAT 57.501 33.333 0.00 0.00 43.59 1.28
284 285 4.650754 GATATGTAATATCGGGTCCGCT 57.349 45.455 4.27 0.00 45.43 5.52
285 286 5.007385 GATATGTAATATCGGGTCCGCTT 57.993 43.478 4.27 1.40 45.43 4.68
286 287 2.519377 TGTAATATCGGGTCCGCTTG 57.481 50.000 4.27 0.00 39.59 4.01
287 288 1.069513 TGTAATATCGGGTCCGCTTGG 59.930 52.381 4.27 0.00 39.59 3.61
288 289 1.069668 GTAATATCGGGTCCGCTTGGT 59.930 52.381 4.27 0.00 39.59 3.67
289 290 0.544697 AATATCGGGTCCGCTTGGTT 59.455 50.000 4.27 0.00 39.59 3.67
290 291 0.179056 ATATCGGGTCCGCTTGGTTG 60.179 55.000 4.27 0.00 39.59 3.77
291 292 1.546589 TATCGGGTCCGCTTGGTTGT 61.547 55.000 4.27 0.00 39.59 3.32
292 293 1.546589 ATCGGGTCCGCTTGGTTGTA 61.547 55.000 4.27 0.00 39.59 2.41
293 294 1.740296 CGGGTCCGCTTGGTTGTAG 60.740 63.158 0.00 0.00 0.00 2.74
294 295 1.373812 GGGTCCGCTTGGTTGTAGT 59.626 57.895 0.00 0.00 0.00 2.73
295 296 0.672711 GGGTCCGCTTGGTTGTAGTC 60.673 60.000 0.00 0.00 0.00 2.59
296 297 0.034337 GGTCCGCTTGGTTGTAGTCA 59.966 55.000 0.00 0.00 0.00 3.41
297 298 1.429463 GTCCGCTTGGTTGTAGTCAG 58.571 55.000 0.00 0.00 0.00 3.51
298 299 0.320374 TCCGCTTGGTTGTAGTCAGG 59.680 55.000 0.00 0.00 0.00 3.86
299 300 0.034896 CCGCTTGGTTGTAGTCAGGT 59.965 55.000 0.00 0.00 0.00 4.00
300 301 1.542547 CCGCTTGGTTGTAGTCAGGTT 60.543 52.381 0.00 0.00 0.00 3.50
301 302 2.289195 CCGCTTGGTTGTAGTCAGGTTA 60.289 50.000 0.00 0.00 0.00 2.85
302 303 3.596214 CGCTTGGTTGTAGTCAGGTTAT 58.404 45.455 0.00 0.00 0.00 1.89
303 304 3.617263 CGCTTGGTTGTAGTCAGGTTATC 59.383 47.826 0.00 0.00 0.00 1.75
304 305 4.620803 CGCTTGGTTGTAGTCAGGTTATCT 60.621 45.833 0.00 0.00 0.00 1.98
305 306 5.246307 GCTTGGTTGTAGTCAGGTTATCTT 58.754 41.667 0.00 0.00 0.00 2.40
306 307 5.705905 GCTTGGTTGTAGTCAGGTTATCTTT 59.294 40.000 0.00 0.00 0.00 2.52
307 308 6.206829 GCTTGGTTGTAGTCAGGTTATCTTTT 59.793 38.462 0.00 0.00 0.00 2.27
308 309 7.504924 TTGGTTGTAGTCAGGTTATCTTTTG 57.495 36.000 0.00 0.00 0.00 2.44
309 310 6.833041 TGGTTGTAGTCAGGTTATCTTTTGA 58.167 36.000 0.00 0.00 0.00 2.69
310 311 7.458397 TGGTTGTAGTCAGGTTATCTTTTGAT 58.542 34.615 0.00 0.00 42.66 2.57
311 312 7.942341 TGGTTGTAGTCAGGTTATCTTTTGATT 59.058 33.333 0.00 0.00 40.19 2.57
312 313 8.793592 GGTTGTAGTCAGGTTATCTTTTGATTT 58.206 33.333 0.00 0.00 40.19 2.17
327 328 8.810652 TCTTTTGATTTTATTTTTCCTCGGTG 57.189 30.769 0.00 0.00 0.00 4.94
328 329 7.383843 TCTTTTGATTTTATTTTTCCTCGGTGC 59.616 33.333 0.00 0.00 0.00 5.01
329 330 5.975693 TGATTTTATTTTTCCTCGGTGCT 57.024 34.783 0.00 0.00 0.00 4.40
330 331 5.949735 TGATTTTATTTTTCCTCGGTGCTC 58.050 37.500 0.00 0.00 0.00 4.26
331 332 4.413495 TTTTATTTTTCCTCGGTGCTCG 57.587 40.909 0.00 0.00 40.90 5.03
332 333 2.018542 TATTTTTCCTCGGTGCTCGG 57.981 50.000 0.70 0.00 39.77 4.63
333 334 0.036306 ATTTTTCCTCGGTGCTCGGT 59.964 50.000 0.70 0.00 39.77 4.69
334 335 0.882927 TTTTTCCTCGGTGCTCGGTG 60.883 55.000 0.70 0.00 39.77 4.94
335 336 1.750341 TTTTCCTCGGTGCTCGGTGA 61.750 55.000 0.70 0.00 39.77 4.02
336 337 2.430382 TTTCCTCGGTGCTCGGTGAC 62.430 60.000 0.70 0.00 39.77 3.67
337 338 3.374402 CCTCGGTGCTCGGTGACT 61.374 66.667 0.70 0.00 39.77 3.41
338 339 2.126307 CTCGGTGCTCGGTGACTG 60.126 66.667 0.70 0.00 39.77 3.51
339 340 2.596338 TCGGTGCTCGGTGACTGA 60.596 61.111 0.00 0.00 39.77 3.41
340 341 2.142357 CTCGGTGCTCGGTGACTGAA 62.142 60.000 0.00 0.00 39.77 3.02
341 342 1.300620 CGGTGCTCGGTGACTGAAA 60.301 57.895 0.00 0.00 34.75 2.69
342 343 1.557443 CGGTGCTCGGTGACTGAAAC 61.557 60.000 0.00 0.00 34.75 2.78
343 344 0.249911 GGTGCTCGGTGACTGAAACT 60.250 55.000 0.00 0.00 0.00 2.66
344 345 1.583054 GTGCTCGGTGACTGAAACTT 58.417 50.000 0.00 0.00 0.00 2.66
345 346 2.547218 GGTGCTCGGTGACTGAAACTTA 60.547 50.000 0.00 0.00 0.00 2.24
346 347 3.326747 GTGCTCGGTGACTGAAACTTAT 58.673 45.455 0.00 0.00 0.00 1.73
347 348 3.746492 GTGCTCGGTGACTGAAACTTATT 59.254 43.478 0.00 0.00 0.00 1.40
348 349 4.213482 GTGCTCGGTGACTGAAACTTATTT 59.787 41.667 0.00 0.00 0.00 1.40
349 350 4.451096 TGCTCGGTGACTGAAACTTATTTC 59.549 41.667 0.00 0.00 43.96 2.17
394 395 2.672961 TCTTGTGATGTAGAAGCCGG 57.327 50.000 0.00 0.00 30.10 6.13
395 396 1.899814 TCTTGTGATGTAGAAGCCGGT 59.100 47.619 1.90 0.00 30.10 5.28
396 397 2.002586 CTTGTGATGTAGAAGCCGGTG 58.997 52.381 1.90 0.00 0.00 4.94
397 398 0.973632 TGTGATGTAGAAGCCGGTGT 59.026 50.000 1.90 0.00 0.00 4.16
398 399 2.172679 TGTGATGTAGAAGCCGGTGTA 58.827 47.619 1.90 0.00 0.00 2.90
399 400 2.094390 TGTGATGTAGAAGCCGGTGTAC 60.094 50.000 1.90 0.00 0.00 2.90
400 401 2.165845 GTGATGTAGAAGCCGGTGTACT 59.834 50.000 1.90 0.35 0.00 2.73
401 402 2.426024 TGATGTAGAAGCCGGTGTACTC 59.574 50.000 1.90 0.00 0.00 2.59
402 403 1.913778 TGTAGAAGCCGGTGTACTCA 58.086 50.000 1.90 0.00 0.00 3.41
403 404 1.542915 TGTAGAAGCCGGTGTACTCAC 59.457 52.381 1.90 0.00 43.19 3.51
422 423 5.336150 TCACCTTTTGAGAAAAACATGCA 57.664 34.783 0.00 0.00 0.00 3.96
423 424 5.108517 TCACCTTTTGAGAAAAACATGCAC 58.891 37.500 0.00 0.00 0.00 4.57
424 425 4.026640 CACCTTTTGAGAAAAACATGCACG 60.027 41.667 0.00 0.00 0.00 5.34
425 426 3.490526 CCTTTTGAGAAAAACATGCACGG 59.509 43.478 0.00 0.00 0.00 4.94
426 427 4.358851 CTTTTGAGAAAAACATGCACGGA 58.641 39.130 0.00 0.00 0.00 4.69
427 428 4.377839 TTTGAGAAAAACATGCACGGAA 57.622 36.364 0.00 0.00 0.00 4.30
428 429 4.582701 TTGAGAAAAACATGCACGGAAT 57.417 36.364 0.00 0.00 0.00 3.01
429 430 4.582701 TGAGAAAAACATGCACGGAATT 57.417 36.364 0.00 0.00 0.00 2.17
430 431 5.697473 TGAGAAAAACATGCACGGAATTA 57.303 34.783 0.00 0.00 0.00 1.40
431 432 5.698832 TGAGAAAAACATGCACGGAATTAG 58.301 37.500 0.00 0.00 0.00 1.73
432 433 4.485163 AGAAAAACATGCACGGAATTAGC 58.515 39.130 0.00 0.00 0.00 3.09
433 434 3.932545 AAAACATGCACGGAATTAGCA 57.067 38.095 0.00 0.00 43.14 3.49
440 441 2.742053 TGCACGGAATTAGCAAGTCTTC 59.258 45.455 0.00 0.00 34.97 2.87
442 443 3.375299 GCACGGAATTAGCAAGTCTTCAT 59.625 43.478 0.00 0.00 0.00 2.57
467 468 5.316987 CTCTTGATTTTCACCCTGGTAGTT 58.683 41.667 0.00 0.00 0.00 2.24
468 469 5.313712 TCTTGATTTTCACCCTGGTAGTTC 58.686 41.667 0.00 0.00 0.00 3.01
469 470 4.028993 TGATTTTCACCCTGGTAGTTCC 57.971 45.455 0.00 0.00 0.00 3.62
490 491 4.661709 TCCCGGTCTTTAAATAGGCCTATT 59.338 41.667 29.02 29.02 37.78 1.73
521 522 1.455248 TTTGCCAATGTAGTACGGGC 58.545 50.000 18.47 18.47 44.82 6.13
524 525 1.137479 TGCCAATGTAGTACGGGCTAC 59.863 52.381 22.98 10.49 44.85 3.58
669 671 8.683550 AGCTTATACAAAAAGGAAAAATACGC 57.316 30.769 0.00 0.00 0.00 4.42
681 683 6.454795 AGGAAAAATACGCACATGAAAATGT 58.545 32.000 0.00 0.00 34.64 2.71
704 706 3.627123 GCCAACATTATTTTTGATGGGCC 59.373 43.478 0.00 0.00 37.47 5.80
705 707 4.841422 CCAACATTATTTTTGATGGGCCA 58.159 39.130 9.61 9.61 34.39 5.36
713 727 3.699411 TTTTGATGGGCCAGGATTTTG 57.301 42.857 13.78 0.00 0.00 2.44
728 742 7.098477 CCAGGATTTTGACTTGCAAATCATAA 58.902 34.615 11.92 13.40 45.30 1.90
776 790 2.681344 CCGCCACCCAGTATAAGTTTTC 59.319 50.000 0.00 0.00 0.00 2.29
781 795 5.556915 CCACCCAGTATAAGTTTTCACAGA 58.443 41.667 0.00 0.00 0.00 3.41
785 799 9.226606 CACCCAGTATAAGTTTTCACAGAATTA 57.773 33.333 0.00 0.00 0.00 1.40
786 800 9.975218 ACCCAGTATAAGTTTTCACAGAATTAT 57.025 29.630 0.00 0.00 0.00 1.28
845 859 6.582677 TTTTGAAATAATCCCTCGCAAAGA 57.417 33.333 0.00 0.00 0.00 2.52
846 860 6.582677 TTTGAAATAATCCCTCGCAAAGAA 57.417 33.333 0.00 0.00 0.00 2.52
847 861 6.582677 TTGAAATAATCCCTCGCAAAGAAA 57.417 33.333 0.00 0.00 0.00 2.52
848 862 6.582677 TGAAATAATCCCTCGCAAAGAAAA 57.417 33.333 0.00 0.00 0.00 2.29
849 863 6.987386 TGAAATAATCCCTCGCAAAGAAAAA 58.013 32.000 0.00 0.00 0.00 1.94
873 887 7.462571 AAATCTTTTGAAATAACGGCCTACT 57.537 32.000 0.00 0.00 0.00 2.57
952 966 1.110442 ACTCTCCAATCTCCAGAGCG 58.890 55.000 0.00 0.00 37.75 5.03
1578 1712 2.898840 CATTCCGAGCGGCTGCAT 60.899 61.111 21.93 4.54 46.23 3.96
1579 1713 2.590007 ATTCCGAGCGGCTGCATC 60.590 61.111 21.93 13.11 46.23 3.91
1580 1714 3.390183 ATTCCGAGCGGCTGCATCA 62.390 57.895 21.93 0.00 46.23 3.07
1581 1715 2.874648 ATTCCGAGCGGCTGCATCAA 62.875 55.000 21.93 6.98 46.23 2.57
1583 1717 2.816958 CGAGCGGCTGCATCAACT 60.817 61.111 21.93 0.00 46.23 3.16
1618 1752 3.243737 TGCACCATTCGTAGCTAGGTATG 60.244 47.826 20.11 20.11 0.00 2.39
1635 1769 4.021192 AGGTATGGTGCAAAAACATTCTGG 60.021 41.667 0.00 0.00 0.00 3.86
1667 1818 9.314321 CGTTAATTATGTCCTGATCTTGTTACT 57.686 33.333 0.00 0.00 0.00 2.24
1680 1831 9.160496 CTGATCTTGTTACTTTTAGAGAGCAAT 57.840 33.333 0.00 0.00 30.38 3.56
1686 1839 7.648142 TGTTACTTTTAGAGAGCAATTTGTGG 58.352 34.615 0.00 0.00 0.00 4.17
1699 1852 9.423061 AGAGCAATTTGTGGTTATTTTACATTC 57.577 29.630 0.00 0.00 38.34 2.67
1700 1853 8.546597 AGCAATTTGTGGTTATTTTACATTCC 57.453 30.769 0.00 0.00 32.77 3.01
1707 1860 9.480861 TTGTGGTTATTTTACATTCCATGGATA 57.519 29.630 17.06 7.19 33.60 2.59
1708 1861 9.653516 TGTGGTTATTTTACATTCCATGGATAT 57.346 29.630 17.06 9.32 33.60 1.63
1740 1897 4.126437 CCGTGGATATGAACTGTTGCATA 58.874 43.478 0.00 6.48 0.00 3.14
1752 2095 3.935203 ACTGTTGCATAGTCACATGTAGC 59.065 43.478 0.00 0.00 0.00 3.58
1755 2098 2.554142 TGCATAGTCACATGTAGCTGC 58.446 47.619 0.00 4.66 0.00 5.25
1979 2619 0.250467 GAGCAAGCTGGTGAAGTCCA 60.250 55.000 0.00 0.00 36.00 4.02
2044 2684 1.517832 CTACTGGAGGGTCAAGCCG 59.482 63.158 0.00 0.00 38.44 5.52
2580 3237 1.613437 CTGAGGTGAAAAATGGCCGTT 59.387 47.619 3.71 3.71 0.00 4.44
2586 3243 2.538037 GTGAAAAATGGCCGTTGTTCAC 59.462 45.455 39.33 39.33 38.41 3.18
2587 3244 2.428890 TGAAAAATGGCCGTTGTTCACT 59.571 40.909 31.38 4.39 0.00 3.41
2588 3245 3.118956 TGAAAAATGGCCGTTGTTCACTT 60.119 39.130 31.38 11.12 0.00 3.16
2589 3246 2.793278 AAATGGCCGTTGTTCACTTC 57.207 45.000 11.94 0.00 0.00 3.01
2590 3247 1.686355 AATGGCCGTTGTTCACTTCA 58.314 45.000 10.11 0.00 0.00 3.02
2591 3248 0.951558 ATGGCCGTTGTTCACTTCAC 59.048 50.000 0.00 0.00 0.00 3.18
2626 3283 2.742372 GTGACCACCGCGATTGCT 60.742 61.111 8.23 0.00 39.65 3.91
2628 3285 1.153647 TGACCACCGCGATTGCTAG 60.154 57.895 8.23 0.00 39.65 3.42
2665 3322 2.019249 TGCCAATAATCTGCTGCACTC 58.981 47.619 0.00 0.00 0.00 3.51
2666 3323 2.019249 GCCAATAATCTGCTGCACTCA 58.981 47.619 0.00 0.00 0.00 3.41
2667 3324 2.223433 GCCAATAATCTGCTGCACTCAC 60.223 50.000 0.00 0.00 0.00 3.51
2668 3325 3.276857 CCAATAATCTGCTGCACTCACT 58.723 45.455 0.00 0.00 0.00 3.41
2688 3345 4.734854 CACTGTGTGCAACTTTAATGTGTC 59.265 41.667 0.00 0.00 38.04 3.67
2689 3346 4.640201 ACTGTGTGCAACTTTAATGTGTCT 59.360 37.500 0.00 0.00 38.04 3.41
2690 3347 4.919206 TGTGTGCAACTTTAATGTGTCTG 58.081 39.130 0.00 0.00 38.04 3.51
2701 3358 6.833933 ACTTTAATGTGTCTGTTTTTCTCCCT 59.166 34.615 0.00 0.00 0.00 4.20
2714 3371 9.508642 CTGTTTTTCTCCCTACTAGAAGAAATT 57.491 33.333 0.00 0.00 34.59 1.82
2739 3396 2.310309 TGTGAGCTTTCGCACAGTG 58.690 52.632 2.03 0.00 45.74 3.66
2846 3509 5.118729 TGCATGCATGATATGATATCCCA 57.881 39.130 30.64 10.72 0.00 4.37
2912 3575 1.534805 CCGATCGATGTGGAGTGAGTG 60.535 57.143 18.66 0.00 0.00 3.51
2913 3576 1.534805 CGATCGATGTGGAGTGAGTGG 60.535 57.143 10.26 0.00 0.00 4.00
2922 3585 2.122413 AGTGAGTGGCCTGTCCCA 60.122 61.111 3.32 0.00 0.00 4.37
3006 3669 3.367743 CTTGTGCACGGCAGGCAT 61.368 61.111 13.13 0.00 44.11 4.40
3007 3670 3.620300 CTTGTGCACGGCAGGCATG 62.620 63.158 13.13 0.00 44.11 4.06
3030 3697 1.961277 GACACCACTCACTTGCCCG 60.961 63.158 0.00 0.00 0.00 6.13
3100 3767 4.695455 TGCTTCTATAGGCAAACACACTTC 59.305 41.667 0.00 0.00 35.40 3.01
3107 3774 2.097466 AGGCAAACACACTTCTTCAACG 59.903 45.455 0.00 0.00 0.00 4.10
3120 3787 6.580791 CACTTCTTCAACGTAGAGAAAGAGAG 59.419 42.308 8.80 7.32 0.00 3.20
3137 3806 1.026584 GAGGACCTTCTACGCCTCTC 58.973 60.000 0.00 0.00 42.81 3.20
3141 3810 2.223852 GGACCTTCTACGCCTCTCAATC 60.224 54.545 0.00 0.00 0.00 2.67
3142 3811 1.405821 ACCTTCTACGCCTCTCAATCG 59.594 52.381 0.00 0.00 0.00 3.34
3143 3812 1.269309 CCTTCTACGCCTCTCAATCGG 60.269 57.143 0.00 0.00 0.00 4.18
3144 3813 1.405821 CTTCTACGCCTCTCAATCGGT 59.594 52.381 0.00 0.00 0.00 4.69
3149 3818 0.661780 CGCCTCTCAATCGGTCGATC 60.662 60.000 6.32 0.00 33.08 3.69
3160 3829 4.601621 ATCGGTCGATCGATATACACAG 57.398 45.455 30.97 8.56 46.47 3.66
3167 3836 5.685954 GTCGATCGATATACACAGCTTTCAA 59.314 40.000 22.50 0.00 0.00 2.69
3171 3840 7.737744 CGATCGATATACACAGCTTTCAAAATC 59.262 37.037 10.26 0.00 0.00 2.17
3178 3847 5.535333 ACACAGCTTTCAAAATCATTCCAG 58.465 37.500 0.00 0.00 0.00 3.86
3215 3914 2.681064 ACCGGGTTGGCGCTACTA 60.681 61.111 7.64 0.00 43.94 1.82
3228 3927 1.332993 CGCTACTATCGTGTCGTCCTG 60.333 57.143 0.00 0.00 0.00 3.86
3365 4068 3.572255 GCGAGAAGGGACATCTAGATTCT 59.428 47.826 1.33 3.00 36.11 2.40
3377 4080 8.207545 GGACATCTAGATTCTCTGGTAAATTGT 58.792 37.037 1.33 0.00 0.00 2.71
3394 4097 1.526917 GTGTGCACAGAGCCAAGGT 60.527 57.895 22.40 0.00 44.83 3.50
3399 4102 1.239968 GCACAGAGCCAAGGTGAAGG 61.240 60.000 0.00 0.00 37.23 3.46
3419 4122 2.169978 GGGGTGGACTACTGATGGTAAC 59.830 54.545 0.00 0.00 0.00 2.50
3439 4142 1.411246 CCATCGGTCCTAATGGTTCGA 59.589 52.381 10.63 0.00 40.53 3.71
3445 4148 0.539986 TCCTAATGGTTCGAGTGCCC 59.460 55.000 0.00 0.00 34.23 5.36
3447 4150 1.429148 CTAATGGTTCGAGTGCCCGC 61.429 60.000 0.00 0.00 0.00 6.13
3448 4151 2.173758 TAATGGTTCGAGTGCCCGCA 62.174 55.000 0.00 0.00 0.00 5.69
3481 4184 4.056125 CGCACGAGCTGGAGGTGA 62.056 66.667 1.44 0.00 39.10 4.02
3487 4190 0.247460 CGAGCTGGAGGTGAATGTGA 59.753 55.000 0.00 0.00 0.00 3.58
3513 4216 1.336125 GCATCTACAGCTGGATTTGGC 59.664 52.381 19.93 10.50 0.00 4.52
3516 4221 3.153369 TCTACAGCTGGATTTGGCAAA 57.847 42.857 19.93 16.01 0.00 3.68
3519 4224 3.775261 ACAGCTGGATTTGGCAAATTT 57.225 38.095 25.02 6.34 0.00 1.82
3521 4226 5.226194 ACAGCTGGATTTGGCAAATTTAA 57.774 34.783 25.02 13.32 0.00 1.52
3531 4236 4.344359 TGGCAAATTTAACCCCTCAAAC 57.656 40.909 6.90 0.00 0.00 2.93
3533 4238 3.243941 GGCAAATTTAACCCCTCAAACGT 60.244 43.478 0.00 0.00 0.00 3.99
3536 4241 3.512219 ATTTAACCCCTCAAACGTCCA 57.488 42.857 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.246635 ACCGTCACATCAGCCTGTAC 59.753 55.000 0.00 0.00 0.00 2.90
5 6 1.448540 CTGGACCGTCACATCAGCC 60.449 63.158 0.00 0.00 0.00 4.85
6 7 2.103042 GCTGGACCGTCACATCAGC 61.103 63.158 10.51 10.51 42.89 4.26
7 8 1.448540 GGCTGGACCGTCACATCAG 60.449 63.158 0.00 0.00 0.00 2.90
8 9 1.913262 AGGCTGGACCGTCACATCA 60.913 57.895 0.00 0.00 46.52 3.07
9 10 1.448540 CAGGCTGGACCGTCACATC 60.449 63.158 6.61 0.00 46.52 3.06
10 11 0.902984 TACAGGCTGGACCGTCACAT 60.903 55.000 20.34 0.00 46.52 3.21
11 12 1.532078 TACAGGCTGGACCGTCACA 60.532 57.895 20.34 0.00 46.52 3.58
12 13 1.080025 GTACAGGCTGGACCGTCAC 60.080 63.158 19.55 0.00 46.52 3.67
13 14 2.632544 CGTACAGGCTGGACCGTCA 61.633 63.158 23.81 0.00 46.52 4.35
14 15 1.664321 ATCGTACAGGCTGGACCGTC 61.664 60.000 23.81 0.00 46.52 4.79
15 16 1.681327 ATCGTACAGGCTGGACCGT 60.681 57.895 23.81 9.96 46.52 4.83
16 17 1.226974 CATCGTACAGGCTGGACCG 60.227 63.158 23.81 17.96 46.52 4.79
17 18 1.108776 TACATCGTACAGGCTGGACC 58.891 55.000 23.81 6.75 39.61 4.46
18 19 2.623889 AGATACATCGTACAGGCTGGAC 59.376 50.000 20.28 20.28 0.00 4.02
19 20 2.623416 CAGATACATCGTACAGGCTGGA 59.377 50.000 20.34 7.62 0.00 3.86
20 21 2.288457 CCAGATACATCGTACAGGCTGG 60.288 54.545 20.34 0.62 36.14 4.85
21 22 2.362397 ACCAGATACATCGTACAGGCTG 59.638 50.000 14.16 14.16 0.00 4.85
22 23 2.667470 ACCAGATACATCGTACAGGCT 58.333 47.619 0.00 0.00 0.00 4.58
23 24 3.454371 AACCAGATACATCGTACAGGC 57.546 47.619 0.00 0.00 0.00 4.85
24 25 6.570692 ACTAAAACCAGATACATCGTACAGG 58.429 40.000 0.00 0.00 0.00 4.00
25 26 7.255569 TGACTAAAACCAGATACATCGTACAG 58.744 38.462 0.00 0.00 0.00 2.74
26 27 7.160547 TGACTAAAACCAGATACATCGTACA 57.839 36.000 0.00 0.00 0.00 2.90
27 28 8.470040 TTTGACTAAAACCAGATACATCGTAC 57.530 34.615 0.00 0.00 0.00 3.67
28 29 8.928733 GTTTTGACTAAAACCAGATACATCGTA 58.071 33.333 4.70 0.00 46.27 3.43
29 30 7.803724 GTTTTGACTAAAACCAGATACATCGT 58.196 34.615 4.70 0.00 46.27 3.73
42 43 4.263435 ACGTGGAGTGGTTTTGACTAAAA 58.737 39.130 0.00 0.00 33.57 1.52
43 44 3.872771 GACGTGGAGTGGTTTTGACTAAA 59.127 43.478 0.00 0.00 0.00 1.85
44 45 3.460103 GACGTGGAGTGGTTTTGACTAA 58.540 45.455 0.00 0.00 0.00 2.24
45 46 2.544277 CGACGTGGAGTGGTTTTGACTA 60.544 50.000 0.00 0.00 0.00 2.59
46 47 1.805120 CGACGTGGAGTGGTTTTGACT 60.805 52.381 0.00 0.00 0.00 3.41
47 48 0.580104 CGACGTGGAGTGGTTTTGAC 59.420 55.000 0.00 0.00 0.00 3.18
48 49 0.531090 CCGACGTGGAGTGGTTTTGA 60.531 55.000 0.00 0.00 42.00 2.69
49 50 0.531090 TCCGACGTGGAGTGGTTTTG 60.531 55.000 0.00 0.00 43.74 2.44
50 51 1.824658 TCCGACGTGGAGTGGTTTT 59.175 52.632 0.00 0.00 43.74 2.43
51 52 3.541072 TCCGACGTGGAGTGGTTT 58.459 55.556 0.00 0.00 43.74 3.27
72 73 3.192633 CCTATACCGCTTTGGCAGTTTTT 59.807 43.478 0.00 0.00 43.94 1.94
73 74 2.752903 CCTATACCGCTTTGGCAGTTTT 59.247 45.455 0.00 0.00 43.94 2.43
74 75 2.365582 CCTATACCGCTTTGGCAGTTT 58.634 47.619 0.00 0.00 43.94 2.66
75 76 1.408266 CCCTATACCGCTTTGGCAGTT 60.408 52.381 0.00 0.00 43.94 3.16
76 77 0.180406 CCCTATACCGCTTTGGCAGT 59.820 55.000 0.00 0.00 43.94 4.40
77 78 0.468226 TCCCTATACCGCTTTGGCAG 59.532 55.000 0.00 0.00 43.94 4.85
78 79 0.179468 GTCCCTATACCGCTTTGGCA 59.821 55.000 0.00 0.00 43.94 4.92
79 80 0.468648 AGTCCCTATACCGCTTTGGC 59.531 55.000 0.00 0.00 43.94 4.52
80 81 4.124970 GTTTAGTCCCTATACCGCTTTGG 58.875 47.826 0.00 0.00 46.41 3.28
81 82 5.019785 AGTTTAGTCCCTATACCGCTTTG 57.980 43.478 0.00 0.00 0.00 2.77
82 83 5.688814 AAGTTTAGTCCCTATACCGCTTT 57.311 39.130 0.00 0.00 0.00 3.51
83 84 6.781507 AGATAAGTTTAGTCCCTATACCGCTT 59.218 38.462 0.00 0.00 0.00 4.68
84 85 6.208994 CAGATAAGTTTAGTCCCTATACCGCT 59.791 42.308 0.00 0.00 0.00 5.52
85 86 6.388278 CAGATAAGTTTAGTCCCTATACCGC 58.612 44.000 0.00 0.00 0.00 5.68
86 87 6.492772 ACCAGATAAGTTTAGTCCCTATACCG 59.507 42.308 0.00 0.00 0.00 4.02
87 88 7.852550 ACCAGATAAGTTTAGTCCCTATACC 57.147 40.000 0.00 0.00 0.00 2.73
88 89 9.543783 CAAACCAGATAAGTTTAGTCCCTATAC 57.456 37.037 0.00 0.00 35.71 1.47
89 90 9.496710 TCAAACCAGATAAGTTTAGTCCCTATA 57.503 33.333 0.00 0.00 35.71 1.31
90 91 8.388656 TCAAACCAGATAAGTTTAGTCCCTAT 57.611 34.615 0.00 0.00 35.71 2.57
91 92 7.801893 TCAAACCAGATAAGTTTAGTCCCTA 57.198 36.000 0.00 0.00 35.71 3.53
92 93 6.697641 TCAAACCAGATAAGTTTAGTCCCT 57.302 37.500 0.00 0.00 35.71 4.20
93 94 7.939784 ATTCAAACCAGATAAGTTTAGTCCC 57.060 36.000 0.00 0.00 35.71 4.46
94 95 9.668497 ACTATTCAAACCAGATAAGTTTAGTCC 57.332 33.333 0.00 0.00 35.71 3.85
116 117 9.309224 ACCAGCAAAATTTAGTTCCTTAACTAT 57.691 29.630 0.00 0.00 45.37 2.12
117 118 8.700439 ACCAGCAAAATTTAGTTCCTTAACTA 57.300 30.769 0.00 0.00 44.26 2.24
119 120 8.657074 AAACCAGCAAAATTTAGTTCCTTAAC 57.343 30.769 0.00 0.00 35.72 2.01
121 122 9.752961 GTAAAACCAGCAAAATTTAGTTCCTTA 57.247 29.630 0.00 0.00 0.00 2.69
122 123 8.261522 TGTAAAACCAGCAAAATTTAGTTCCTT 58.738 29.630 0.00 0.00 0.00 3.36
123 124 7.787028 TGTAAAACCAGCAAAATTTAGTTCCT 58.213 30.769 0.00 0.00 0.00 3.36
124 125 7.709182 ACTGTAAAACCAGCAAAATTTAGTTCC 59.291 33.333 0.00 0.00 35.83 3.62
125 126 8.642908 ACTGTAAAACCAGCAAAATTTAGTTC 57.357 30.769 0.00 0.00 35.83 3.01
129 130 9.535878 CCTTAACTGTAAAACCAGCAAAATTTA 57.464 29.630 0.00 0.00 35.83 1.40
130 131 7.497579 CCCTTAACTGTAAAACCAGCAAAATTT 59.502 33.333 0.00 0.00 35.83 1.82
131 132 6.989759 CCCTTAACTGTAAAACCAGCAAAATT 59.010 34.615 0.00 0.00 35.83 1.82
132 133 6.325286 TCCCTTAACTGTAAAACCAGCAAAAT 59.675 34.615 0.00 0.00 35.83 1.82
133 134 5.657302 TCCCTTAACTGTAAAACCAGCAAAA 59.343 36.000 0.00 0.00 35.83 2.44
134 135 5.202004 TCCCTTAACTGTAAAACCAGCAAA 58.798 37.500 0.00 0.00 35.83 3.68
135 136 4.794334 TCCCTTAACTGTAAAACCAGCAA 58.206 39.130 0.00 0.00 35.83 3.91
136 137 4.440826 TCCCTTAACTGTAAAACCAGCA 57.559 40.909 0.00 0.00 35.83 4.41
137 138 5.007682 TGATCCCTTAACTGTAAAACCAGC 58.992 41.667 0.00 0.00 35.83 4.85
138 139 7.703058 AATGATCCCTTAACTGTAAAACCAG 57.297 36.000 0.00 0.00 38.45 4.00
139 140 7.947890 AGAAATGATCCCTTAACTGTAAAACCA 59.052 33.333 0.00 0.00 0.00 3.67
140 141 8.349568 AGAAATGATCCCTTAACTGTAAAACC 57.650 34.615 0.00 0.00 0.00 3.27
146 147 9.440761 AGAGTATAGAAATGATCCCTTAACTGT 57.559 33.333 0.00 0.00 0.00 3.55
147 148 9.921637 GAGAGTATAGAAATGATCCCTTAACTG 57.078 37.037 0.00 0.00 0.00 3.16
148 149 8.798402 CGAGAGTATAGAAATGATCCCTTAACT 58.202 37.037 0.00 0.00 0.00 2.24
149 150 8.794553 TCGAGAGTATAGAAATGATCCCTTAAC 58.205 37.037 0.00 0.00 0.00 2.01
150 151 8.935614 TCGAGAGTATAGAAATGATCCCTTAA 57.064 34.615 0.00 0.00 0.00 1.85
151 152 8.935614 TTCGAGAGTATAGAAATGATCCCTTA 57.064 34.615 0.00 0.00 0.00 2.69
152 153 7.841282 TTCGAGAGTATAGAAATGATCCCTT 57.159 36.000 0.00 0.00 0.00 3.95
153 154 7.726291 TCTTTCGAGAGTATAGAAATGATCCCT 59.274 37.037 2.53 0.00 32.88 4.20
154 155 7.887381 TCTTTCGAGAGTATAGAAATGATCCC 58.113 38.462 2.53 0.00 32.88 3.85
155 156 8.573035 ACTCTTTCGAGAGTATAGAAATGATCC 58.427 37.037 7.27 0.00 46.23 3.36
169 170 3.445450 TCATCCCTCAACTCTTTCGAGAG 59.555 47.826 0.00 0.00 39.74 3.20
170 171 3.431415 TCATCCCTCAACTCTTTCGAGA 58.569 45.455 0.00 0.00 39.74 4.04
171 172 3.876274 TCATCCCTCAACTCTTTCGAG 57.124 47.619 0.00 0.00 43.10 4.04
172 173 4.617253 TTTCATCCCTCAACTCTTTCGA 57.383 40.909 0.00 0.00 0.00 3.71
173 174 5.689383 TTTTTCATCCCTCAACTCTTTCG 57.311 39.130 0.00 0.00 0.00 3.46
175 176 9.981460 AGTATATTTTTCATCCCTCAACTCTTT 57.019 29.630 0.00 0.00 0.00 2.52
176 177 9.981460 AAGTATATTTTTCATCCCTCAACTCTT 57.019 29.630 0.00 0.00 0.00 2.85
177 178 9.620259 GAAGTATATTTTTCATCCCTCAACTCT 57.380 33.333 0.00 0.00 0.00 3.24
178 179 9.620259 AGAAGTATATTTTTCATCCCTCAACTC 57.380 33.333 2.84 0.00 0.00 3.01
179 180 9.620259 GAGAAGTATATTTTTCATCCCTCAACT 57.380 33.333 0.00 0.00 0.00 3.16
180 181 8.841300 GGAGAAGTATATTTTTCATCCCTCAAC 58.159 37.037 1.74 0.00 0.00 3.18
181 182 7.998964 GGGAGAAGTATATTTTTCATCCCTCAA 59.001 37.037 17.60 0.00 37.56 3.02
182 183 7.350921 AGGGAGAAGTATATTTTTCATCCCTCA 59.649 37.037 19.54 0.00 41.77 3.86
183 184 7.750655 AGGGAGAAGTATATTTTTCATCCCTC 58.249 38.462 19.54 0.00 41.77 4.30
184 185 7.713704 AGGGAGAAGTATATTTTTCATCCCT 57.286 36.000 19.54 19.54 41.31 4.20
185 186 8.768501 AAAGGGAGAAGTATATTTTTCATCCC 57.231 34.615 17.41 17.41 39.03 3.85
199 200 9.516546 CCAAACTAGTTAAATAAAGGGAGAAGT 57.483 33.333 8.92 0.00 0.00 3.01
200 201 8.459635 GCCAAACTAGTTAAATAAAGGGAGAAG 58.540 37.037 8.92 0.00 0.00 2.85
201 202 8.168058 AGCCAAACTAGTTAAATAAAGGGAGAA 58.832 33.333 8.92 0.00 0.00 2.87
202 203 7.610305 CAGCCAAACTAGTTAAATAAAGGGAGA 59.390 37.037 8.92 0.00 0.00 3.71
203 204 7.148069 CCAGCCAAACTAGTTAAATAAAGGGAG 60.148 40.741 8.92 0.00 0.00 4.30
204 205 6.661805 CCAGCCAAACTAGTTAAATAAAGGGA 59.338 38.462 8.92 0.00 0.00 4.20
205 206 6.436218 ACCAGCCAAACTAGTTAAATAAAGGG 59.564 38.462 8.92 6.27 0.00 3.95
206 207 7.175990 TCACCAGCCAAACTAGTTAAATAAAGG 59.824 37.037 8.92 8.00 0.00 3.11
207 208 8.106247 TCACCAGCCAAACTAGTTAAATAAAG 57.894 34.615 8.92 0.00 0.00 1.85
208 209 7.722285 ACTCACCAGCCAAACTAGTTAAATAAA 59.278 33.333 8.92 0.00 0.00 1.40
209 210 7.228590 ACTCACCAGCCAAACTAGTTAAATAA 58.771 34.615 8.92 0.00 0.00 1.40
210 211 6.775708 ACTCACCAGCCAAACTAGTTAAATA 58.224 36.000 8.92 0.00 0.00 1.40
211 212 5.631119 ACTCACCAGCCAAACTAGTTAAAT 58.369 37.500 8.92 0.00 0.00 1.40
212 213 5.043737 ACTCACCAGCCAAACTAGTTAAA 57.956 39.130 8.92 0.00 0.00 1.52
213 214 4.101898 TGACTCACCAGCCAAACTAGTTAA 59.898 41.667 8.92 0.00 0.00 2.01
214 215 3.644265 TGACTCACCAGCCAAACTAGTTA 59.356 43.478 8.92 0.00 0.00 2.24
215 216 2.438021 TGACTCACCAGCCAAACTAGTT 59.562 45.455 1.12 1.12 0.00 2.24
216 217 2.047061 TGACTCACCAGCCAAACTAGT 58.953 47.619 0.00 0.00 0.00 2.57
217 218 2.037772 AGTGACTCACCAGCCAAACTAG 59.962 50.000 5.51 0.00 34.49 2.57
218 219 2.047061 AGTGACTCACCAGCCAAACTA 58.953 47.619 5.51 0.00 34.49 2.24
219 220 0.839946 AGTGACTCACCAGCCAAACT 59.160 50.000 5.51 0.00 34.49 2.66
220 221 1.334869 CAAGTGACTCACCAGCCAAAC 59.665 52.381 5.51 0.00 34.49 2.93
221 222 1.211703 TCAAGTGACTCACCAGCCAAA 59.788 47.619 5.51 0.00 34.49 3.28
222 223 0.836606 TCAAGTGACTCACCAGCCAA 59.163 50.000 5.51 0.00 34.49 4.52
223 224 0.394192 CTCAAGTGACTCACCAGCCA 59.606 55.000 5.51 0.00 34.49 4.75
224 225 0.952984 GCTCAAGTGACTCACCAGCC 60.953 60.000 5.51 0.00 34.49 4.85
225 226 0.034616 AGCTCAAGTGACTCACCAGC 59.965 55.000 13.87 13.87 34.49 4.85
226 227 1.668337 CGAGCTCAAGTGACTCACCAG 60.668 57.143 15.40 1.42 34.49 4.00
227 228 0.315251 CGAGCTCAAGTGACTCACCA 59.685 55.000 15.40 0.00 34.49 4.17
228 229 0.315568 ACGAGCTCAAGTGACTCACC 59.684 55.000 15.40 0.00 34.49 4.02
229 230 2.857618 CTACGAGCTCAAGTGACTCAC 58.142 52.381 15.40 0.38 34.10 3.51
230 231 1.200252 GCTACGAGCTCAAGTGACTCA 59.800 52.381 15.40 0.00 38.45 3.41
231 232 1.902840 GCTACGAGCTCAAGTGACTC 58.097 55.000 15.40 0.00 38.45 3.36
242 243 1.681793 TCATCCACCTAAGCTACGAGC 59.318 52.381 0.00 0.00 42.84 5.03
243 244 3.215151 TCTCATCCACCTAAGCTACGAG 58.785 50.000 0.00 0.00 0.00 4.18
244 245 3.292492 TCTCATCCACCTAAGCTACGA 57.708 47.619 0.00 0.00 0.00 3.43
245 246 5.184096 ACATATCTCATCCACCTAAGCTACG 59.816 44.000 0.00 0.00 0.00 3.51
246 247 6.597832 ACATATCTCATCCACCTAAGCTAC 57.402 41.667 0.00 0.00 0.00 3.58
247 248 8.901472 ATTACATATCTCATCCACCTAAGCTA 57.099 34.615 0.00 0.00 0.00 3.32
248 249 7.805083 ATTACATATCTCATCCACCTAAGCT 57.195 36.000 0.00 0.00 0.00 3.74
249 250 9.757227 GATATTACATATCTCATCCACCTAAGC 57.243 37.037 0.00 0.00 38.82 3.09
250 251 9.958234 CGATATTACATATCTCATCCACCTAAG 57.042 37.037 2.97 0.00 39.55 2.18
251 252 8.914011 CCGATATTACATATCTCATCCACCTAA 58.086 37.037 2.97 0.00 39.55 2.69
252 253 7.505923 CCCGATATTACATATCTCATCCACCTA 59.494 40.741 2.97 0.00 39.55 3.08
253 254 6.325028 CCCGATATTACATATCTCATCCACCT 59.675 42.308 2.97 0.00 39.55 4.00
254 255 6.098409 ACCCGATATTACATATCTCATCCACC 59.902 42.308 2.97 0.00 39.55 4.61
255 256 7.113658 ACCCGATATTACATATCTCATCCAC 57.886 40.000 2.97 0.00 39.55 4.02
256 257 6.323996 GGACCCGATATTACATATCTCATCCA 59.676 42.308 2.97 0.00 39.55 3.41
257 258 6.515200 CGGACCCGATATTACATATCTCATCC 60.515 46.154 1.54 5.22 42.83 3.51
258 259 6.439599 CGGACCCGATATTACATATCTCATC 58.560 44.000 1.54 0.00 42.83 2.92
259 260 5.221263 GCGGACCCGATATTACATATCTCAT 60.221 44.000 13.24 0.00 42.83 2.90
260 261 4.097437 GCGGACCCGATATTACATATCTCA 59.903 45.833 13.24 0.00 42.83 3.27
261 262 4.338682 AGCGGACCCGATATTACATATCTC 59.661 45.833 13.24 0.00 42.83 2.75
262 263 4.279145 AGCGGACCCGATATTACATATCT 58.721 43.478 13.24 0.00 42.83 1.98
263 264 4.650754 AGCGGACCCGATATTACATATC 57.349 45.455 13.24 0.00 42.83 1.63
264 265 4.382685 CCAAGCGGACCCGATATTACATAT 60.383 45.833 13.24 0.00 42.83 1.78
265 266 3.056393 CCAAGCGGACCCGATATTACATA 60.056 47.826 13.24 0.00 42.83 2.29
266 267 2.289444 CCAAGCGGACCCGATATTACAT 60.289 50.000 13.24 0.00 42.83 2.29
267 268 1.069513 CCAAGCGGACCCGATATTACA 59.930 52.381 13.24 0.00 42.83 2.41
268 269 1.069668 ACCAAGCGGACCCGATATTAC 59.930 52.381 13.24 0.00 42.83 1.89
269 270 1.416243 ACCAAGCGGACCCGATATTA 58.584 50.000 13.24 0.00 42.83 0.98
270 271 0.544697 AACCAAGCGGACCCGATATT 59.455 50.000 13.24 0.60 42.83 1.28
271 272 0.179056 CAACCAAGCGGACCCGATAT 60.179 55.000 13.24 0.00 42.83 1.63
272 273 1.219664 CAACCAAGCGGACCCGATA 59.780 57.895 13.24 0.00 42.83 2.92
273 274 1.546589 TACAACCAAGCGGACCCGAT 61.547 55.000 13.24 2.22 42.83 4.18
274 275 2.162338 CTACAACCAAGCGGACCCGA 62.162 60.000 13.24 0.00 42.83 5.14
275 276 1.740296 CTACAACCAAGCGGACCCG 60.740 63.158 3.73 3.73 43.09 5.28
276 277 0.672711 GACTACAACCAAGCGGACCC 60.673 60.000 0.00 0.00 35.59 4.46
277 278 0.034337 TGACTACAACCAAGCGGACC 59.966 55.000 0.00 0.00 35.59 4.46
278 279 1.429463 CTGACTACAACCAAGCGGAC 58.571 55.000 0.00 0.00 35.59 4.79
279 280 0.320374 CCTGACTACAACCAAGCGGA 59.680 55.000 0.00 0.00 35.59 5.54
280 281 0.034896 ACCTGACTACAACCAAGCGG 59.965 55.000 0.00 0.00 38.77 5.52
281 282 1.878953 AACCTGACTACAACCAAGCG 58.121 50.000 0.00 0.00 0.00 4.68
282 283 4.833390 AGATAACCTGACTACAACCAAGC 58.167 43.478 0.00 0.00 0.00 4.01
283 284 7.444183 TCAAAAGATAACCTGACTACAACCAAG 59.556 37.037 0.00 0.00 0.00 3.61
284 285 7.284074 TCAAAAGATAACCTGACTACAACCAA 58.716 34.615 0.00 0.00 0.00 3.67
285 286 6.833041 TCAAAAGATAACCTGACTACAACCA 58.167 36.000 0.00 0.00 0.00 3.67
286 287 7.923414 ATCAAAAGATAACCTGACTACAACC 57.077 36.000 0.00 0.00 0.00 3.77
301 302 9.423061 CACCGAGGAAAAATAAAATCAAAAGAT 57.577 29.630 0.00 0.00 0.00 2.40
302 303 7.383843 GCACCGAGGAAAAATAAAATCAAAAGA 59.616 33.333 0.00 0.00 0.00 2.52
303 304 7.384932 AGCACCGAGGAAAAATAAAATCAAAAG 59.615 33.333 0.00 0.00 0.00 2.27
304 305 7.213678 AGCACCGAGGAAAAATAAAATCAAAA 58.786 30.769 0.00 0.00 0.00 2.44
305 306 6.754193 AGCACCGAGGAAAAATAAAATCAAA 58.246 32.000 0.00 0.00 0.00 2.69
306 307 6.339587 AGCACCGAGGAAAAATAAAATCAA 57.660 33.333 0.00 0.00 0.00 2.57
307 308 5.391523 CGAGCACCGAGGAAAAATAAAATCA 60.392 40.000 0.00 0.00 41.76 2.57
308 309 5.028375 CGAGCACCGAGGAAAAATAAAATC 58.972 41.667 0.00 0.00 41.76 2.17
309 310 4.142469 CCGAGCACCGAGGAAAAATAAAAT 60.142 41.667 0.00 0.00 41.76 1.82
310 311 3.189702 CCGAGCACCGAGGAAAAATAAAA 59.810 43.478 0.00 0.00 41.76 1.52
311 312 2.745281 CCGAGCACCGAGGAAAAATAAA 59.255 45.455 0.00 0.00 41.76 1.40
312 313 2.289819 ACCGAGCACCGAGGAAAAATAA 60.290 45.455 0.00 0.00 41.76 1.40
313 314 1.276989 ACCGAGCACCGAGGAAAAATA 59.723 47.619 0.00 0.00 41.76 1.40
314 315 0.036306 ACCGAGCACCGAGGAAAAAT 59.964 50.000 0.00 0.00 41.76 1.82
315 316 0.882927 CACCGAGCACCGAGGAAAAA 60.883 55.000 0.00 0.00 41.76 1.94
316 317 1.301401 CACCGAGCACCGAGGAAAA 60.301 57.895 0.00 0.00 41.76 2.29
317 318 2.204461 TCACCGAGCACCGAGGAAA 61.204 57.895 0.00 0.00 41.76 3.13
318 319 2.599281 TCACCGAGCACCGAGGAA 60.599 61.111 0.00 0.00 41.76 3.36
319 320 3.371063 GTCACCGAGCACCGAGGA 61.371 66.667 0.00 0.00 41.76 3.71
320 321 3.374402 AGTCACCGAGCACCGAGG 61.374 66.667 0.00 0.00 41.76 4.63
321 322 2.126307 CAGTCACCGAGCACCGAG 60.126 66.667 0.00 0.00 41.76 4.63
322 323 1.740332 TTTCAGTCACCGAGCACCGA 61.740 55.000 0.00 0.00 41.76 4.69
323 324 1.300620 TTTCAGTCACCGAGCACCG 60.301 57.895 0.00 0.00 38.18 4.94
324 325 0.249911 AGTTTCAGTCACCGAGCACC 60.250 55.000 0.00 0.00 0.00 5.01
325 326 1.583054 AAGTTTCAGTCACCGAGCAC 58.417 50.000 0.00 0.00 0.00 4.40
326 327 3.678056 ATAAGTTTCAGTCACCGAGCA 57.322 42.857 0.00 0.00 0.00 4.26
327 328 4.451096 TGAAATAAGTTTCAGTCACCGAGC 59.549 41.667 0.00 0.00 46.49 5.03
374 375 2.501723 ACCGGCTTCTACATCACAAGAT 59.498 45.455 0.00 0.00 33.87 2.40
375 376 1.899814 ACCGGCTTCTACATCACAAGA 59.100 47.619 0.00 0.00 0.00 3.02
376 377 2.002586 CACCGGCTTCTACATCACAAG 58.997 52.381 0.00 0.00 0.00 3.16
377 378 1.346395 ACACCGGCTTCTACATCACAA 59.654 47.619 0.00 0.00 0.00 3.33
378 379 0.973632 ACACCGGCTTCTACATCACA 59.026 50.000 0.00 0.00 0.00 3.58
379 380 2.165845 AGTACACCGGCTTCTACATCAC 59.834 50.000 0.00 0.00 0.00 3.06
380 381 2.426024 GAGTACACCGGCTTCTACATCA 59.574 50.000 0.00 0.00 0.00 3.07
381 382 2.426024 TGAGTACACCGGCTTCTACATC 59.574 50.000 0.00 0.00 0.00 3.06
382 383 2.165845 GTGAGTACACCGGCTTCTACAT 59.834 50.000 0.00 0.00 40.74 2.29
383 384 1.542915 GTGAGTACACCGGCTTCTACA 59.457 52.381 0.00 0.00 40.74 2.74
384 385 2.274920 GTGAGTACACCGGCTTCTAC 57.725 55.000 0.00 0.00 40.74 2.59
400 401 5.108517 GTGCATGTTTTTCTCAAAAGGTGA 58.891 37.500 0.00 0.00 32.32 4.02
401 402 4.026640 CGTGCATGTTTTTCTCAAAAGGTG 60.027 41.667 0.00 0.00 32.32 4.00
402 403 4.111916 CGTGCATGTTTTTCTCAAAAGGT 58.888 39.130 0.00 0.00 32.32 3.50
403 404 3.490526 CCGTGCATGTTTTTCTCAAAAGG 59.509 43.478 4.96 0.00 32.32 3.11
404 405 4.358851 TCCGTGCATGTTTTTCTCAAAAG 58.641 39.130 4.96 0.00 32.32 2.27
405 406 4.377839 TCCGTGCATGTTTTTCTCAAAA 57.622 36.364 4.96 0.00 0.00 2.44
406 407 4.377839 TTCCGTGCATGTTTTTCTCAAA 57.622 36.364 4.96 0.00 0.00 2.69
407 408 4.582701 ATTCCGTGCATGTTTTTCTCAA 57.417 36.364 4.96 0.00 0.00 3.02
408 409 4.582701 AATTCCGTGCATGTTTTTCTCA 57.417 36.364 4.96 0.00 0.00 3.27
409 410 4.558860 GCTAATTCCGTGCATGTTTTTCTC 59.441 41.667 4.96 0.00 0.00 2.87
410 411 4.022416 TGCTAATTCCGTGCATGTTTTTCT 60.022 37.500 4.96 0.00 0.00 2.52
411 412 4.233789 TGCTAATTCCGTGCATGTTTTTC 58.766 39.130 4.96 0.00 0.00 2.29
412 413 4.250116 TGCTAATTCCGTGCATGTTTTT 57.750 36.364 4.96 0.00 0.00 1.94
413 414 3.932545 TGCTAATTCCGTGCATGTTTT 57.067 38.095 4.96 0.00 0.00 2.43
414 415 3.255642 ACTTGCTAATTCCGTGCATGTTT 59.744 39.130 4.96 0.00 40.51 2.83
415 416 2.819608 ACTTGCTAATTCCGTGCATGTT 59.180 40.909 4.96 0.00 40.51 2.71
416 417 2.420022 GACTTGCTAATTCCGTGCATGT 59.580 45.455 4.96 0.00 44.09 3.21
417 418 2.679837 AGACTTGCTAATTCCGTGCATG 59.320 45.455 0.00 0.00 36.55 4.06
418 419 2.991250 AGACTTGCTAATTCCGTGCAT 58.009 42.857 0.00 0.00 36.55 3.96
419 420 2.472695 AGACTTGCTAATTCCGTGCA 57.527 45.000 0.00 0.00 34.69 4.57
420 421 2.742053 TGAAGACTTGCTAATTCCGTGC 59.258 45.455 0.00 0.00 0.00 5.34
421 422 4.728882 GCATGAAGACTTGCTAATTCCGTG 60.729 45.833 0.00 0.00 41.77 4.94
422 423 3.375299 GCATGAAGACTTGCTAATTCCGT 59.625 43.478 0.00 0.00 41.77 4.69
423 424 3.945179 GCATGAAGACTTGCTAATTCCG 58.055 45.455 0.00 0.00 41.77 4.30
431 432 4.698583 AATCAAGAGCATGAAGACTTGC 57.301 40.909 0.00 0.00 44.16 4.01
432 433 6.581542 GTGAAAATCAAGAGCATGAAGACTTG 59.418 38.462 0.00 6.12 40.37 3.16
433 434 6.294397 GGTGAAAATCAAGAGCATGAAGACTT 60.294 38.462 0.00 0.00 32.06 3.01
440 441 3.119245 CCAGGGTGAAAATCAAGAGCATG 60.119 47.826 0.00 0.00 0.00 4.06
442 443 2.158475 ACCAGGGTGAAAATCAAGAGCA 60.158 45.455 0.00 0.00 0.00 4.26
467 468 2.484602 AGGCCTATTTAAAGACCGGGA 58.515 47.619 1.29 0.00 0.00 5.14
468 469 4.635699 ATAGGCCTATTTAAAGACCGGG 57.364 45.455 20.16 0.00 0.00 5.73
469 470 5.472478 GGAAATAGGCCTATTTAAAGACCGG 59.528 44.000 38.70 0.00 43.52 5.28
498 499 4.619628 GCCCGTACTACATTGGCAAAATTT 60.620 41.667 3.01 0.00 41.76 1.82
499 500 3.119280 GCCCGTACTACATTGGCAAAATT 60.119 43.478 3.01 0.00 41.76 1.82
500 501 2.425668 GCCCGTACTACATTGGCAAAAT 59.574 45.455 3.01 0.00 41.76 1.82
501 502 1.813786 GCCCGTACTACATTGGCAAAA 59.186 47.619 3.01 0.00 41.76 2.44
502 503 1.003812 AGCCCGTACTACATTGGCAAA 59.996 47.619 3.01 0.00 44.60 3.68
503 504 0.616371 AGCCCGTACTACATTGGCAA 59.384 50.000 0.68 0.68 44.60 4.52
658 660 6.704512 ACATTTTCATGTGCGTATTTTTCC 57.295 33.333 0.00 0.00 42.46 3.13
681 683 4.260170 GCCCATCAAAAATAATGTTGGCA 58.740 39.130 0.00 0.00 36.67 4.92
691 693 4.289148 TCAAAATCCTGGCCCATCAAAAAT 59.711 37.500 0.00 0.00 0.00 1.82
698 700 2.181975 CAAGTCAAAATCCTGGCCCAT 58.818 47.619 0.00 0.00 0.00 4.00
704 706 8.712285 ATTATGATTTGCAAGTCAAAATCCTG 57.288 30.769 25.84 0.00 46.60 3.86
744 758 1.283613 TGGGTGGCGGATCTGTAATTT 59.716 47.619 2.89 0.00 0.00 1.82
756 770 3.126343 GTGAAAACTTATACTGGGTGGCG 59.874 47.826 0.00 0.00 0.00 5.69
821 835 6.987386 TCTTTGCGAGGGATTATTTCAAAAA 58.013 32.000 0.00 0.00 0.00 1.94
847 861 8.364894 AGTAGGCCGTTATTTCAAAAGATTTTT 58.635 29.630 0.00 0.00 0.00 1.94
848 862 7.892609 AGTAGGCCGTTATTTCAAAAGATTTT 58.107 30.769 0.00 0.00 0.00 1.82
849 863 7.462571 AGTAGGCCGTTATTTCAAAAGATTT 57.537 32.000 0.00 0.00 0.00 2.17
850 864 7.827729 ACTAGTAGGCCGTTATTTCAAAAGATT 59.172 33.333 0.00 0.00 0.00 2.40
851 865 7.336396 ACTAGTAGGCCGTTATTTCAAAAGAT 58.664 34.615 0.00 0.00 0.00 2.40
852 866 6.704310 ACTAGTAGGCCGTTATTTCAAAAGA 58.296 36.000 0.00 0.00 0.00 2.52
853 867 6.980051 ACTAGTAGGCCGTTATTTCAAAAG 57.020 37.500 0.00 0.00 0.00 2.27
854 868 6.536224 GCTACTAGTAGGCCGTTATTTCAAAA 59.464 38.462 27.24 0.00 33.87 2.44
855 869 6.044682 GCTACTAGTAGGCCGTTATTTCAAA 58.955 40.000 27.24 0.00 33.87 2.69
856 870 5.594926 GCTACTAGTAGGCCGTTATTTCAA 58.405 41.667 27.24 0.00 33.87 2.69
857 871 5.192327 GCTACTAGTAGGCCGTTATTTCA 57.808 43.478 27.24 0.00 33.87 2.69
873 887 2.291153 ACTTGTGTAGGACGGGCTACTA 60.291 50.000 0.00 0.00 0.00 1.82
1576 1710 6.292488 GGTGCATGAAAAAGTTGAAGTTGATG 60.292 38.462 0.00 0.00 0.00 3.07
1577 1711 5.754890 GGTGCATGAAAAAGTTGAAGTTGAT 59.245 36.000 0.00 0.00 0.00 2.57
1578 1712 5.108517 GGTGCATGAAAAAGTTGAAGTTGA 58.891 37.500 0.00 0.00 0.00 3.18
1579 1713 4.869297 TGGTGCATGAAAAAGTTGAAGTTG 59.131 37.500 0.00 0.00 0.00 3.16
1580 1714 5.083533 TGGTGCATGAAAAAGTTGAAGTT 57.916 34.783 0.00 0.00 0.00 2.66
1581 1715 4.734398 TGGTGCATGAAAAAGTTGAAGT 57.266 36.364 0.00 0.00 0.00 3.01
1583 1717 4.744137 CGAATGGTGCATGAAAAAGTTGAA 59.256 37.500 0.00 0.00 0.00 2.69
1618 1752 3.068024 TCAGACCAGAATGTTTTTGCACC 59.932 43.478 0.00 0.00 0.00 5.01
1635 1769 7.203910 AGATCAGGACATAATTAACGTCAGAC 58.796 38.462 16.12 0.00 0.00 3.51
1680 1831 8.195165 TCCATGGAATGTAAAATAACCACAAA 57.805 30.769 13.46 0.00 44.81 2.83
1723 1876 6.908870 TGTGACTATGCAACAGTTCATATC 57.091 37.500 5.86 6.87 0.00 1.63
1740 1897 1.345741 ACACTGCAGCTACATGTGACT 59.654 47.619 15.27 2.27 33.41 3.41
1752 2095 1.540267 ACGGAGTACACTACACTGCAG 59.460 52.381 13.48 13.48 41.94 4.41
2257 2909 2.177580 CACGACGCCCGGCATAAAT 61.178 57.895 10.77 0.00 43.93 1.40
2548 3200 1.531840 ACCTCAGTGACTCGTGGCT 60.532 57.895 0.00 0.00 0.00 4.75
2580 3237 1.208535 ACGGTGAAGGTGAAGTGAACA 59.791 47.619 0.00 0.00 0.00 3.18
2586 3243 1.071471 AGCCACGGTGAAGGTGAAG 59.929 57.895 10.28 0.00 37.60 3.02
2587 3244 1.227823 CAGCCACGGTGAAGGTGAA 60.228 57.895 10.28 0.00 37.60 3.18
2588 3245 2.425592 CAGCCACGGTGAAGGTGA 59.574 61.111 10.28 0.00 37.60 4.02
2589 3246 2.111043 ACAGCCACGGTGAAGGTG 59.889 61.111 10.28 11.86 34.87 4.00
2590 3247 2.111043 CACAGCCACGGTGAAGGT 59.889 61.111 10.28 1.23 38.54 3.50
2591 3248 2.111043 ACACAGCCACGGTGAAGG 59.889 61.111 10.28 0.57 39.53 3.46
2626 3283 2.754552 GCAATCACAGACCAATTGGCTA 59.245 45.455 24.79 8.14 39.32 3.93
2628 3285 1.404583 GGCAATCACAGACCAATTGGC 60.405 52.381 24.79 16.52 44.96 4.52
2665 3322 4.671377 ACACATTAAAGTTGCACACAGTG 58.329 39.130 0.00 0.00 36.51 3.66
2666 3323 4.640201 AGACACATTAAAGTTGCACACAGT 59.360 37.500 0.00 0.00 0.00 3.55
2667 3324 4.971830 CAGACACATTAAAGTTGCACACAG 59.028 41.667 0.00 0.00 0.00 3.66
2668 3325 4.397730 ACAGACACATTAAAGTTGCACACA 59.602 37.500 0.00 0.00 0.00 3.72
2688 3345 9.508642 AATTTCTTCTAGTAGGGAGAAAAACAG 57.491 33.333 22.29 0.00 32.64 3.16
2689 3346 9.862149 AAATTTCTTCTAGTAGGGAGAAAAACA 57.138 29.630 22.29 9.48 32.64 2.83
2739 3396 2.156504 CGCACATGTCACTCTTCACTTC 59.843 50.000 0.00 0.00 0.00 3.01
2771 3428 0.530744 GACAGACATCAGTACGCCCA 59.469 55.000 0.00 0.00 0.00 5.36
2846 3509 1.445582 GGACCGCTCGTTGTCGATT 60.446 57.895 0.00 0.00 45.21 3.34
3030 3697 3.617288 GCTTGGGATTTGAACACATTCCC 60.617 47.826 0.00 0.00 45.28 3.97
3100 3767 5.395642 GTCCTCTCTTTCTCTACGTTGAAG 58.604 45.833 0.00 0.00 0.00 3.02
3107 3774 5.295045 CGTAGAAGGTCCTCTCTTTCTCTAC 59.705 48.000 12.08 12.08 0.00 2.59
3120 3787 1.183549 TTGAGAGGCGTAGAAGGTCC 58.816 55.000 0.00 0.00 0.00 4.46
3137 3806 4.719040 TGTGTATATCGATCGACCGATTG 58.281 43.478 21.78 12.21 45.87 2.67
3141 3810 2.159824 AGCTGTGTATATCGATCGACCG 59.840 50.000 22.06 4.71 0.00 4.79
3142 3811 3.833545 AGCTGTGTATATCGATCGACC 57.166 47.619 22.06 9.32 0.00 4.79
3143 3812 5.212934 TGAAAGCTGTGTATATCGATCGAC 58.787 41.667 22.06 8.95 0.00 4.20
3144 3813 5.432885 TGAAAGCTGTGTATATCGATCGA 57.567 39.130 21.86 21.86 0.00 3.59
3149 3818 9.162793 GAATGATTTTGAAAGCTGTGTATATCG 57.837 33.333 0.00 0.00 0.00 2.92
3160 3829 5.063060 GCACATCTGGAATGATTTTGAAAGC 59.937 40.000 0.00 0.00 0.00 3.51
3167 3836 5.221382 GGCATTAGCACATCTGGAATGATTT 60.221 40.000 0.00 0.00 44.61 2.17
3171 3840 2.953648 TGGCATTAGCACATCTGGAATG 59.046 45.455 0.00 0.00 44.61 2.67
3178 3847 2.098117 GTCTTGGTGGCATTAGCACATC 59.902 50.000 0.00 0.00 44.61 3.06
3211 3910 3.575725 CCAGCAGGACGACACGATAGTA 61.576 54.545 0.00 0.00 43.83 1.82
3215 3914 2.573869 CCAGCAGGACGACACGAT 59.426 61.111 0.00 0.00 36.89 3.73
3276 3977 0.033503 TGACCGCATGAGGAGTAGGA 60.034 55.000 23.45 0.00 34.73 2.94
3306 4007 0.740868 ACACCACCATCTTGCGATCG 60.741 55.000 11.69 11.69 0.00 3.69
3307 4008 0.729116 CACACCACCATCTTGCGATC 59.271 55.000 0.00 0.00 0.00 3.69
3308 4009 0.036732 ACACACCACCATCTTGCGAT 59.963 50.000 0.00 0.00 0.00 4.58
3309 4010 0.602638 GACACACCACCATCTTGCGA 60.603 55.000 0.00 0.00 0.00 5.10
3310 4011 1.868997 GACACACCACCATCTTGCG 59.131 57.895 0.00 0.00 0.00 4.85
3311 4012 0.884704 ACGACACACCACCATCTTGC 60.885 55.000 0.00 0.00 0.00 4.01
3365 4068 3.814625 TCTGTGCACACAATTTACCAGA 58.185 40.909 17.42 4.61 41.33 3.86
3377 4080 1.526686 CACCTTGGCTCTGTGCACA 60.527 57.895 20.37 20.37 45.15 4.57
3394 4097 2.187958 CATCAGTAGTCCACCCCTTCA 58.812 52.381 0.00 0.00 0.00 3.02
3399 4102 2.169978 GGTTACCATCAGTAGTCCACCC 59.830 54.545 0.00 0.00 30.92 4.61
3419 4122 1.411246 TCGAACCATTAGGACCGATGG 59.589 52.381 21.64 21.64 46.57 3.51
3431 4134 3.329542 ATGCGGGCACTCGAACCAT 62.330 57.895 0.00 0.00 0.00 3.55
3439 4142 3.058160 GTTCTGCATGCGGGCACT 61.058 61.111 25.97 0.00 39.25 4.40
3448 4151 0.606130 TGCGACACCATGTTCTGCAT 60.606 50.000 0.00 0.00 38.60 3.96
3453 4156 1.781555 CTCGTGCGACACCATGTTC 59.218 57.895 4.73 0.00 0.00 3.18
3481 4184 4.101274 AGCTGTAGATGCTCTGATCACATT 59.899 41.667 0.00 0.00 35.67 2.71
3487 4190 2.675583 TCCAGCTGTAGATGCTCTGAT 58.324 47.619 13.81 0.00 38.92 2.90
3500 4203 4.392754 GGTTAAATTTGCCAAATCCAGCTG 59.607 41.667 6.78 6.78 0.00 4.24
3503 4206 4.019411 AGGGGTTAAATTTGCCAAATCCAG 60.019 41.667 2.61 0.00 0.00 3.86
3504 4207 3.913163 AGGGGTTAAATTTGCCAAATCCA 59.087 39.130 2.61 0.00 0.00 3.41
3506 4209 5.159273 TGAGGGGTTAAATTTGCCAAATC 57.841 39.130 2.61 9.10 0.00 2.17
3513 4216 4.038162 TGGACGTTTGAGGGGTTAAATTTG 59.962 41.667 0.00 0.00 0.00 2.32
3516 4221 3.151554 GTGGACGTTTGAGGGGTTAAAT 58.848 45.455 0.00 0.00 0.00 1.40
3519 4224 0.033781 CGTGGACGTTTGAGGGGTTA 59.966 55.000 0.00 0.00 34.11 2.85
3521 4226 2.424302 CGTGGACGTTTGAGGGGT 59.576 61.111 0.00 0.00 34.11 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.