Multiple sequence alignment - TraesCS5D01G283500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G283500 chr5D 100.000 5245 0 0 1 5245 384472038 384477282 0.000000e+00 9686.0
1 TraesCS5D01G283500 chr5D 100.000 96 0 0 5150 5245 268929587 268929682 1.500000e-40 178.0
2 TraesCS5D01G283500 chr5D 100.000 96 0 0 5150 5245 522063589 522063494 1.500000e-40 178.0
3 TraesCS5D01G283500 chr5D 96.970 33 1 0 871 903 6109662 6109694 7.340000e-04 56.5
4 TraesCS5D01G283500 chr5B 91.817 1882 118 16 2899 4757 461298022 461299890 0.000000e+00 2590.0
5 TraesCS5D01G283500 chr5B 89.500 1181 63 13 1730 2897 461296773 461297905 0.000000e+00 1437.0
6 TraesCS5D01G283500 chr5B 88.558 839 44 29 1 814 461293134 461293945 0.000000e+00 970.0
7 TraesCS5D01G283500 chr5B 84.342 760 48 30 998 1706 461295958 461296697 0.000000e+00 678.0
8 TraesCS5D01G283500 chr5B 79.861 432 57 16 2763 3179 693677709 693677293 6.650000e-74 289.0
9 TraesCS5D01G283500 chr5B 84.462 251 24 10 4908 5147 461302422 461302668 3.160000e-57 233.0
10 TraesCS5D01G283500 chr5B 79.239 289 28 16 2834 3112 701553091 701552825 6.980000e-39 172.0
11 TraesCS5D01G283500 chr5B 93.827 81 5 0 799 879 461293972 461294052 7.130000e-24 122.0
12 TraesCS5D01G283500 chr5A 92.003 1388 84 15 3319 4700 485383437 485384803 0.000000e+00 1923.0
13 TraesCS5D01G283500 chr5A 90.723 927 58 12 2409 3321 485382290 485383202 0.000000e+00 1210.0
14 TraesCS5D01G283500 chr5A 91.047 726 49 6 991 1706 485380703 485381422 0.000000e+00 966.0
15 TraesCS5D01G283500 chr5A 90.499 421 19 7 1 411 485376354 485376763 2.150000e-148 536.0
16 TraesCS5D01G283500 chr5A 90.064 312 29 2 1730 2040 485381494 485381804 2.270000e-108 403.0
17 TraesCS5D01G283500 chr5A 89.836 305 19 4 4857 5149 485385223 485385527 1.070000e-101 381.0
18 TraesCS5D01G283500 chr5A 95.000 100 5 0 799 898 485380124 485380223 1.960000e-34 158.0
19 TraesCS5D01G283500 chr2B 85.832 487 39 7 2705 3176 232785267 232784796 1.700000e-134 490.0
20 TraesCS5D01G283500 chr2B 95.918 49 2 0 3693 3741 28471963 28471915 4.350000e-11 80.5
21 TraesCS5D01G283500 chr2B 100.000 33 0 0 875 907 785613847 785613879 1.580000e-05 62.1
22 TraesCS5D01G283500 chr2A 82.472 445 44 12 2761 3175 88010046 88010486 4.990000e-95 359.0
23 TraesCS5D01G283500 chr2D 82.086 441 44 12 2760 3175 87754113 87754543 1.400000e-90 344.0
24 TraesCS5D01G283500 chr2D 100.000 96 0 0 5150 5245 595905239 595905334 1.500000e-40 178.0
25 TraesCS5D01G283500 chr2D 100.000 96 0 0 5150 5245 600400548 600400643 1.500000e-40 178.0
26 TraesCS5D01G283500 chr2D 87.143 70 5 4 3674 3741 5322758 5322691 5.630000e-10 76.8
27 TraesCS5D01G283500 chr2D 91.071 56 2 3 3686 3741 420523889 420523941 7.290000e-09 73.1
28 TraesCS5D01G283500 chr7A 82.670 352 40 5 2767 3108 667231956 667232296 5.140000e-75 292.0
29 TraesCS5D01G283500 chr7A 80.679 383 41 13 2698 3068 400069072 400068711 3.110000e-67 267.0
30 TraesCS5D01G283500 chr7A 100.000 31 0 0 877 907 670549716 670549746 2.040000e-04 58.4
31 TraesCS5D01G283500 chr4A 83.136 338 35 11 2759 3084 572843194 572842867 6.650000e-74 289.0
32 TraesCS5D01G283500 chr4A 78.804 368 32 19 2834 3177 617850571 617850916 6.880000e-49 206.0
33 TraesCS5D01G283500 chr6D 100.000 96 0 0 5150 5245 461429115 461429020 1.500000e-40 178.0
34 TraesCS5D01G283500 chr4D 100.000 96 0 0 5150 5245 378490220 378490315 1.500000e-40 178.0
35 TraesCS5D01G283500 chr3D 100.000 96 0 0 5150 5245 148240317 148240412 1.500000e-40 178.0
36 TraesCS5D01G283500 chr3D 100.000 96 0 0 5150 5245 596700107 596700202 1.500000e-40 178.0
37 TraesCS5D01G283500 chr1D 100.000 96 0 0 5150 5245 433280856 433280761 1.500000e-40 178.0
38 TraesCS5D01G283500 chrUn 93.878 49 3 0 3693 3741 24316166 24316118 2.030000e-09 75.0
39 TraesCS5D01G283500 chrUn 93.878 49 3 0 3693 3741 24354336 24354384 2.030000e-09 75.0
40 TraesCS5D01G283500 chr4B 85.526 76 3 6 3672 3741 68887615 68887542 7.290000e-09 73.1
41 TraesCS5D01G283500 chr1A 93.750 48 2 1 3694 3741 480430367 480430413 2.620000e-08 71.3
42 TraesCS5D01G283500 chr7D 93.182 44 1 2 874 916 591483275 591483317 4.380000e-06 63.9
43 TraesCS5D01G283500 chr7D 97.222 36 1 0 875 910 22260969 22260934 1.580000e-05 62.1
44 TraesCS5D01G283500 chr1B 97.368 38 0 1 873 910 30728301 30728265 4.380000e-06 63.9
45 TraesCS5D01G283500 chr1B 92.857 42 3 0 869 910 686792436 686792395 1.580000e-05 62.1
46 TraesCS5D01G283500 chr6A 92.857 42 3 0 870 911 552996949 552996990 1.580000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G283500 chr5D 384472038 384477282 5244 False 9686.000000 9686 100.000000 1 5245 1 chr5D.!!$F3 5244
1 TraesCS5D01G283500 chr5B 461293134 461302668 9534 False 1005.000000 2590 88.751000 1 5147 6 chr5B.!!$F1 5146
2 TraesCS5D01G283500 chr5A 485376354 485385527 9173 False 796.714286 1923 91.310286 1 5149 7 chr5A.!!$F1 5148

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 471 0.316204 ACCTGACCGTAGTTCCGTTG 59.684 55.0 0.0 0.0 0.0 4.10 F
1534 6737 0.609131 CATTCACCGGCCTTCCAAGT 60.609 55.0 0.0 0.0 0.0 3.16 F
2810 8412 0.248458 CAATACGGGGATGCGTTTGC 60.248 55.0 0.0 0.0 43.2 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1592 6799 0.695803 CCTGGAGGCCAACCCTATCT 60.696 60.0 5.01 0.0 46.6 1.98 R
2972 8689 0.753848 CTCCTCCTCCCTTCGTCTCC 60.754 65.0 0.00 0.0 0.0 3.71 R
4650 10626 0.387239 GATTCACCGCCTGCACAAAC 60.387 55.0 0.00 0.0 0.0 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 74 2.222931 CGTGGCAAACATACATACACGG 60.223 50.000 0.00 0.00 44.32 4.94
265 273 3.366739 CTTACCCACCGCCGACCTC 62.367 68.421 0.00 0.00 0.00 3.85
288 302 2.434359 GCTACAGCGGTGGTGGAC 60.434 66.667 20.20 0.00 35.13 4.02
371 385 1.081774 GATGAGGATCTCGTCGGCG 60.082 63.158 1.15 1.15 36.89 6.46
372 386 1.507974 GATGAGGATCTCGTCGGCGA 61.508 60.000 13.29 13.29 45.79 5.54
416 439 3.800863 CTTCCGCTGCTGCTGCTG 61.801 66.667 25.43 20.27 40.48 4.41
429 452 0.392193 GCTGCTGCTCCTCTGCTTTA 60.392 55.000 8.53 0.00 39.95 1.85
439 462 1.822990 CCTCTGCTTTACCTGACCGTA 59.177 52.381 0.00 0.00 0.00 4.02
440 463 2.159226 CCTCTGCTTTACCTGACCGTAG 60.159 54.545 0.00 0.00 0.00 3.51
442 465 2.895404 TCTGCTTTACCTGACCGTAGTT 59.105 45.455 0.00 0.00 0.00 2.24
444 467 2.028748 TGCTTTACCTGACCGTAGTTCC 60.029 50.000 0.00 0.00 0.00 3.62
445 468 2.872370 CTTTACCTGACCGTAGTTCCG 58.128 52.381 0.00 0.00 0.00 4.30
447 470 1.909700 TACCTGACCGTAGTTCCGTT 58.090 50.000 0.00 0.00 0.00 4.44
448 471 0.316204 ACCTGACCGTAGTTCCGTTG 59.684 55.000 0.00 0.00 0.00 4.10
449 472 1.012486 CCTGACCGTAGTTCCGTTGC 61.012 60.000 0.00 0.00 0.00 4.17
451 474 1.739196 GACCGTAGTTCCGTTGCCC 60.739 63.158 0.00 0.00 0.00 5.36
454 477 2.047560 GTAGTTCCGTTGCCCGCT 60.048 61.111 0.00 0.00 34.38 5.52
455 478 2.047655 TAGTTCCGTTGCCCGCTG 60.048 61.111 0.00 0.00 34.38 5.18
490 513 1.727335 GCGACAGTTTAAGCTGACTCC 59.273 52.381 24.12 9.25 39.62 3.85
491 514 1.986378 CGACAGTTTAAGCTGACTCCG 59.014 52.381 24.12 16.36 39.62 4.63
508 531 1.635663 CCGAGTTTAACGCAGCCTGG 61.636 60.000 0.00 0.00 0.00 4.45
509 532 1.502190 GAGTTTAACGCAGCCTGGC 59.498 57.895 11.65 11.65 0.00 4.85
510 533 1.228124 AGTTTAACGCAGCCTGGCA 60.228 52.632 22.65 0.00 0.00 4.92
523 2762 1.954258 GCCTGGCAGCAAAGAAGAGAT 60.954 52.381 15.17 0.00 0.00 2.75
527 2766 1.615384 GGCAGCAAAGAAGAGATGGGT 60.615 52.381 0.00 0.00 0.00 4.51
575 2814 1.539388 GTTGGATGTTTGCACGATCCA 59.461 47.619 14.00 14.00 43.19 3.41
592 2831 6.751888 CACGATCCAAAACTTATTTTCATCCC 59.248 38.462 0.00 0.00 35.79 3.85
623 2862 3.754965 TGTTTGCAGAGCTCCAACTTAT 58.245 40.909 10.93 0.00 0.00 1.73
625 2864 2.299993 TGCAGAGCTCCAACTTATCG 57.700 50.000 10.93 0.00 0.00 2.92
630 2869 2.358267 AGAGCTCCAACTTATCGTACCG 59.642 50.000 10.93 0.00 0.00 4.02
635 2874 4.266265 GCTCCAACTTATCGTACCGTTTAC 59.734 45.833 0.00 0.00 0.00 2.01
684 2925 3.493503 GGCGACTAATTGTAAAGATCGGG 59.506 47.826 0.00 0.00 0.00 5.14
695 2936 3.405823 AAAGATCGGGTCCGTTTTACA 57.594 42.857 9.36 0.00 40.74 2.41
696 2937 3.405823 AAGATCGGGTCCGTTTTACAA 57.594 42.857 9.36 0.00 40.74 2.41
697 2938 2.968675 AGATCGGGTCCGTTTTACAAG 58.031 47.619 9.36 0.00 40.74 3.16
698 2939 2.301009 AGATCGGGTCCGTTTTACAAGT 59.699 45.455 9.36 0.00 40.74 3.16
699 2940 2.618442 TCGGGTCCGTTTTACAAGTT 57.382 45.000 9.36 0.00 40.74 2.66
700 2941 3.742433 TCGGGTCCGTTTTACAAGTTA 57.258 42.857 9.36 0.00 40.74 2.24
701 2942 3.389221 TCGGGTCCGTTTTACAAGTTAC 58.611 45.455 9.36 0.00 40.74 2.50
702 2943 3.129871 CGGGTCCGTTTTACAAGTTACA 58.870 45.455 0.55 0.00 34.35 2.41
703 2944 3.184986 CGGGTCCGTTTTACAAGTTACAG 59.815 47.826 0.55 0.00 34.35 2.74
704 2945 4.129380 GGGTCCGTTTTACAAGTTACAGT 58.871 43.478 0.00 0.00 0.00 3.55
705 2946 5.296748 GGGTCCGTTTTACAAGTTACAGTA 58.703 41.667 0.00 0.00 0.00 2.74
706 2947 5.406477 GGGTCCGTTTTACAAGTTACAGTAG 59.594 44.000 0.00 0.00 0.00 2.57
707 2948 6.215845 GGTCCGTTTTACAAGTTACAGTAGA 58.784 40.000 0.00 0.00 0.00 2.59
731 3011 2.764572 ACACTAACCTCCCGTGGATTAG 59.235 50.000 9.78 9.78 33.13 1.73
748 3028 1.645704 TAGCTCTCGACAGGACGTGC 61.646 60.000 0.00 0.00 34.70 5.34
760 3728 1.196130 GGACGTGCGTTCGGTATACG 61.196 60.000 0.00 0.00 46.11 3.06
772 3740 3.441163 TCGGTATACGCACACTCATTTC 58.559 45.455 0.00 0.00 43.86 2.17
783 3752 4.202050 GCACACTCATTTCTCAAAACCTGT 60.202 41.667 0.00 0.00 0.00 4.00
802 3771 4.566278 CCTGTGATGAATCCTGTGGAAAGA 60.566 45.833 0.00 0.00 34.34 2.52
887 3900 7.923414 AATACACTCACAAAATTACTCCCTC 57.077 36.000 0.00 0.00 0.00 4.30
906 3919 9.833917 ACTCCCTCTGTAAACTAATATAAAAGC 57.166 33.333 0.00 0.00 0.00 3.51
907 3920 9.832445 CTCCCTCTGTAAACTAATATAAAAGCA 57.168 33.333 0.00 0.00 0.00 3.91
935 3948 6.875948 ATAAACTGCACAAATACAGTCACA 57.124 33.333 0.00 0.00 46.17 3.58
971 5333 4.391216 CAGTTCGCTCACTTTCATCAATCT 59.609 41.667 0.00 0.00 0.00 2.40
972 5334 5.578336 CAGTTCGCTCACTTTCATCAATCTA 59.422 40.000 0.00 0.00 0.00 1.98
973 5335 5.809562 AGTTCGCTCACTTTCATCAATCTAG 59.190 40.000 0.00 0.00 0.00 2.43
974 5336 5.582689 TCGCTCACTTTCATCAATCTAGA 57.417 39.130 0.00 0.00 0.00 2.43
977 5339 6.873605 TCGCTCACTTTCATCAATCTAGAAAA 59.126 34.615 0.00 0.00 31.59 2.29
978 5340 7.550551 TCGCTCACTTTCATCAATCTAGAAAAT 59.449 33.333 0.00 0.00 31.59 1.82
979 5341 8.180267 CGCTCACTTTCATCAATCTAGAAAATT 58.820 33.333 0.00 0.00 31.59 1.82
980 5342 9.286946 GCTCACTTTCATCAATCTAGAAAATTG 57.713 33.333 0.00 0.00 35.81 2.32
981 5343 9.286946 CTCACTTTCATCAATCTAGAAAATTGC 57.713 33.333 0.00 0.00 34.73 3.56
983 5345 7.219535 CACTTTCATCAATCTAGAAAATTGCGG 59.780 37.037 0.00 0.00 34.73 5.69
984 5346 5.173774 TCATCAATCTAGAAAATTGCGGC 57.826 39.130 0.00 0.00 34.73 6.53
985 5347 4.639755 TCATCAATCTAGAAAATTGCGGCA 59.360 37.500 0.00 0.00 34.73 5.69
987 5349 5.581126 TCAATCTAGAAAATTGCGGCATT 57.419 34.783 2.28 0.00 34.73 3.56
988 5350 5.964758 TCAATCTAGAAAATTGCGGCATTT 58.035 33.333 2.28 3.53 34.73 2.32
989 5351 5.806502 TCAATCTAGAAAATTGCGGCATTTG 59.193 36.000 2.28 0.00 34.73 2.32
1018 6175 0.968405 AATGCCCACATGGTCAACAC 59.032 50.000 0.00 0.00 36.36 3.32
1020 6177 0.822944 TGCCCACATGGTCAACACAG 60.823 55.000 0.00 0.00 36.04 3.66
1024 6181 2.618816 CCCACATGGTCAACACAGCTAT 60.619 50.000 0.00 0.00 0.00 2.97
1120 6300 1.810030 GCGAGGTCACGATCCAACC 60.810 63.158 0.00 0.00 35.09 3.77
1295 6488 3.062466 CCCGTCCGCAGTCTCTGA 61.062 66.667 0.66 0.00 32.44 3.27
1460 6653 1.882623 CCTCCAGCAGGTGAGAAAAAC 59.117 52.381 0.00 0.00 37.53 2.43
1507 6710 8.764524 ATGATATCCGTTCTATCAGTTTTAGC 57.235 34.615 0.00 0.00 38.59 3.09
1534 6737 0.609131 CATTCACCGGCCTTCCAAGT 60.609 55.000 0.00 0.00 0.00 3.16
1540 6743 1.604378 CGGCCTTCCAAGTCTCCAT 59.396 57.895 0.00 0.00 0.00 3.41
1547 6750 3.950395 CCTTCCAAGTCTCCATTGAATCC 59.050 47.826 0.00 0.00 0.00 3.01
1566 6773 3.292460 TCCTCTAGGCTTCTAGCTGTTC 58.708 50.000 0.00 0.00 41.99 3.18
1568 6775 3.317993 CCTCTAGGCTTCTAGCTGTTCTC 59.682 52.174 0.00 0.00 41.99 2.87
1672 6887 4.023291 ACACTTGGTGTTGAATTGGAGTT 58.977 39.130 0.00 0.00 45.08 3.01
1684 6899 4.821805 TGAATTGGAGTTGTGTTCTTCTCC 59.178 41.667 0.00 0.00 44.54 3.71
1686 6901 3.753294 TGGAGTTGTGTTCTTCTCCTC 57.247 47.619 10.66 0.00 44.57 3.71
1706 6921 3.286353 TCAAGTTGTTTGACATGGCTGA 58.714 40.909 0.00 0.00 40.82 4.26
1707 6922 3.890756 TCAAGTTGTTTGACATGGCTGAT 59.109 39.130 0.00 0.00 40.82 2.90
1708 6923 4.341806 TCAAGTTGTTTGACATGGCTGATT 59.658 37.500 0.00 0.00 40.82 2.57
1709 6924 4.247267 AGTTGTTTGACATGGCTGATTG 57.753 40.909 0.00 0.00 0.00 2.67
1711 6926 2.241160 TGTTTGACATGGCTGATTGCT 58.759 42.857 0.00 0.00 42.39 3.91
1712 6927 2.029739 TGTTTGACATGGCTGATTGCTG 60.030 45.455 0.00 0.00 42.39 4.41
1713 6928 1.913778 TTGACATGGCTGATTGCTGT 58.086 45.000 0.00 0.00 42.39 4.40
1716 6931 3.419943 TGACATGGCTGATTGCTGTAAA 58.580 40.909 0.00 0.00 42.39 2.01
1719 6934 4.018490 ACATGGCTGATTGCTGTAAATGA 58.982 39.130 0.00 0.00 42.39 2.57
1720 6935 4.097437 ACATGGCTGATTGCTGTAAATGAG 59.903 41.667 0.00 0.00 42.39 2.90
1721 6936 3.954200 TGGCTGATTGCTGTAAATGAGA 58.046 40.909 0.00 0.00 42.39 3.27
1725 6940 5.105997 GGCTGATTGCTGTAAATGAGAAGTT 60.106 40.000 0.00 0.00 42.39 2.66
1726 6941 6.094048 GGCTGATTGCTGTAAATGAGAAGTTA 59.906 38.462 0.00 0.00 42.39 2.24
1728 6943 8.186821 GCTGATTGCTGTAAATGAGAAGTTATT 58.813 33.333 0.00 0.00 38.95 1.40
1729 6944 9.713740 CTGATTGCTGTAAATGAGAAGTTATTC 57.286 33.333 0.00 0.00 35.52 1.75
1775 7044 2.221169 TGTTCAGTTGGTCATGTCTGC 58.779 47.619 0.00 0.00 0.00 4.26
1795 7064 2.719046 GCGGAAAAATGTCACTGTTTCG 59.281 45.455 0.00 0.00 32.01 3.46
1805 7074 3.007074 TGTCACTGTTTCGGCTAACCATA 59.993 43.478 0.00 0.00 34.57 2.74
1870 7139 4.521146 CCTGGACACTGAATTATCTTGCT 58.479 43.478 0.00 0.00 0.00 3.91
1875 7144 6.595326 TGGACACTGAATTATCTTGCTAGTTG 59.405 38.462 0.00 0.00 0.00 3.16
1883 7152 3.942130 ATCTTGCTAGTTGTTTTGGGC 57.058 42.857 0.00 0.00 0.00 5.36
1887 7168 1.680735 TGCTAGTTGTTTTGGGCTGTG 59.319 47.619 0.00 0.00 0.00 3.66
1900 7181 1.282157 GGGCTGTGATGGTTAGGAACT 59.718 52.381 0.00 0.00 46.37 3.01
2000 7281 0.742505 ATCCATGAAGGCATTGCGTG 59.257 50.000 4.36 0.00 37.29 5.34
2012 7293 3.425404 GCATTGCGTGTGTTATGTTAGG 58.575 45.455 0.00 0.00 0.00 2.69
2202 7799 5.048154 GGGGATCAAGTTAGTCGTCCTATAC 60.048 48.000 0.00 0.00 0.00 1.47
2223 7820 3.895656 ACAAAGGACTAGTGTGTAGCAGA 59.104 43.478 0.00 0.00 0.00 4.26
2234 7831 4.019860 AGTGTGTAGCAGATTGAATCAGGT 60.020 41.667 8.03 7.69 0.00 4.00
2262 7859 7.665559 ACAAGAGAATAGTTTGCCAATCTGTTA 59.334 33.333 0.00 0.00 0.00 2.41
2323 7920 4.469883 CCATCCGGCCATTCTCAG 57.530 61.111 2.24 0.00 0.00 3.35
2353 7950 4.323562 GGTTACCTAGTCTGTTCCAGCAAT 60.324 45.833 0.00 0.00 0.00 3.56
2367 7964 6.991531 TGTTCCAGCAATGCTTTTTATTTCTT 59.008 30.769 4.36 0.00 36.40 2.52
2388 7985 6.708285 TCTTAGTTGATTTCCCTGTCCTAAC 58.292 40.000 0.00 0.00 0.00 2.34
2389 7986 6.500751 TCTTAGTTGATTTCCCTGTCCTAACT 59.499 38.462 0.00 0.00 0.00 2.24
2390 7987 4.911390 AGTTGATTTCCCTGTCCTAACTG 58.089 43.478 0.00 0.00 0.00 3.16
2391 7988 4.351111 AGTTGATTTCCCTGTCCTAACTGT 59.649 41.667 0.00 0.00 0.00 3.55
2392 7989 4.993705 TGATTTCCCTGTCCTAACTGTT 57.006 40.909 0.00 0.00 0.00 3.16
2393 7990 4.651778 TGATTTCCCTGTCCTAACTGTTG 58.348 43.478 2.69 0.00 0.00 3.33
2394 7991 2.561478 TTCCCTGTCCTAACTGTTGC 57.439 50.000 2.69 0.00 0.00 4.17
2395 7992 1.429930 TCCCTGTCCTAACTGTTGCA 58.570 50.000 2.69 0.00 0.00 4.08
2396 7993 1.771854 TCCCTGTCCTAACTGTTGCAA 59.228 47.619 2.69 0.00 0.00 4.08
2397 7994 2.173782 TCCCTGTCCTAACTGTTGCAAA 59.826 45.455 0.00 0.00 0.00 3.68
2398 7995 2.955660 CCCTGTCCTAACTGTTGCAAAA 59.044 45.455 0.00 0.00 0.00 2.44
2399 7996 3.243401 CCCTGTCCTAACTGTTGCAAAAC 60.243 47.826 0.00 0.00 0.00 2.43
2400 7997 3.380004 CCTGTCCTAACTGTTGCAAAACA 59.620 43.478 0.00 0.00 0.00 2.83
2401 7998 4.037923 CCTGTCCTAACTGTTGCAAAACAT 59.962 41.667 0.00 0.00 31.47 2.71
2402 7999 5.451798 CCTGTCCTAACTGTTGCAAAACATT 60.452 40.000 0.00 0.00 31.47 2.71
2403 8000 5.971763 TGTCCTAACTGTTGCAAAACATTT 58.028 33.333 0.00 0.00 31.47 2.32
2404 8001 5.809562 TGTCCTAACTGTTGCAAAACATTTG 59.190 36.000 0.00 0.00 31.47 2.32
2405 8002 6.039616 GTCCTAACTGTTGCAAAACATTTGA 58.960 36.000 0.00 0.00 31.47 2.69
2406 8003 6.701400 GTCCTAACTGTTGCAAAACATTTGAT 59.299 34.615 0.00 0.00 31.47 2.57
2407 8004 7.865385 GTCCTAACTGTTGCAAAACATTTGATA 59.135 33.333 0.00 0.00 31.47 2.15
2580 8182 0.553819 TTGCACCCTTAACCAGTGGT 59.446 50.000 9.70 9.70 37.65 4.16
2603 8205 6.147328 GGTGGTGTTAGACTTATGAACTTCAC 59.853 42.308 0.00 0.00 0.00 3.18
2614 8216 6.823689 ACTTATGAACTTCACAACTTGTCAGT 59.176 34.615 0.00 0.00 33.11 3.41
2622 8224 8.556213 ACTTCACAACTTGTCAGTTACTTAAA 57.444 30.769 0.00 0.00 41.69 1.52
2646 8248 8.546597 AATTCCTTTTAACAATTATGTGGTGC 57.453 30.769 0.00 0.00 40.46 5.01
2647 8249 6.909550 TCCTTTTAACAATTATGTGGTGCT 57.090 33.333 0.00 0.00 40.46 4.40
2648 8250 8.410673 TTCCTTTTAACAATTATGTGGTGCTA 57.589 30.769 0.00 0.00 40.46 3.49
2649 8251 8.588290 TCCTTTTAACAATTATGTGGTGCTAT 57.412 30.769 0.00 0.00 40.46 2.97
2650 8252 8.682710 TCCTTTTAACAATTATGTGGTGCTATC 58.317 33.333 0.00 0.00 40.46 2.08
2651 8253 7.643764 CCTTTTAACAATTATGTGGTGCTATCG 59.356 37.037 0.00 0.00 40.46 2.92
2673 8275 5.929415 TCGTGCTATCATGTAAAGAACACAA 59.071 36.000 0.00 0.00 42.09 3.33
2719 8321 9.967346 TTATAGTCAACTAGATTGCACTGATAC 57.033 33.333 0.00 0.00 38.29 2.24
2726 8328 4.937201 AGATTGCACTGATACGGATACA 57.063 40.909 0.00 0.00 0.00 2.29
2748 8350 5.836898 ACACTTATCAGTATCGGGGTGATAA 59.163 40.000 0.00 0.00 41.17 1.75
2753 8355 4.291792 TCAGTATCGGGGTGATAAGGAAA 58.708 43.478 0.00 0.00 41.17 3.13
2754 8356 4.717778 TCAGTATCGGGGTGATAAGGAAAA 59.282 41.667 0.00 0.00 41.17 2.29
2810 8412 0.248458 CAATACGGGGATGCGTTTGC 60.248 55.000 0.00 0.00 43.20 3.68
2875 8477 6.810182 GCCTCAAGCCATTTAGCATATATTTG 59.190 38.462 0.00 0.00 34.35 2.32
2880 8482 7.458409 AGCCATTTAGCATATATTTGGTCAG 57.542 36.000 0.92 0.00 34.23 3.51
2897 8499 4.469586 TGGTCAGTGCAGTCCATTATCTTA 59.530 41.667 0.00 0.00 0.00 2.10
2972 8689 7.010091 GGTTCACCAAACATAAAAGTTCAGTTG 59.990 37.037 0.00 0.00 39.81 3.16
2977 8694 6.918022 CCAAACATAAAAGTTCAGTTGGAGAC 59.082 38.462 0.00 0.00 30.71 3.36
2978 8695 5.924475 ACATAAAAGTTCAGTTGGAGACG 57.076 39.130 0.00 0.00 0.00 4.18
2996 8713 1.074850 GAAGGGAGGAGGAGGAGGG 60.075 68.421 0.00 0.00 0.00 4.30
3020 8737 5.775813 ATCAGCAGCCTTCCATTAGATAT 57.224 39.130 0.00 0.00 0.00 1.63
3071 8788 4.722700 GAGCAGCGGGGAAAGGCA 62.723 66.667 0.00 0.00 0.00 4.75
3112 8829 0.543174 GCCTGAGAGGTATCGGGGAT 60.543 60.000 1.71 0.00 44.70 3.85
3117 8834 3.697045 CTGAGAGGTATCGGGGATGTATC 59.303 52.174 0.00 0.00 0.00 2.24
3125 8855 3.664551 TCGGGGATGTATCTATCGGAT 57.335 47.619 0.00 0.00 38.38 4.18
3155 8886 0.609662 ATACGGGTACACGGTTGCTT 59.390 50.000 23.48 1.34 38.39 3.91
3235 8966 6.094881 TGTTGTAGCTTTGTAGGGCATATTTC 59.905 38.462 0.00 0.00 0.00 2.17
3334 9302 7.880195 ACTGTCTCTTGTATTGAACTATTGCTT 59.120 33.333 0.00 0.00 0.00 3.91
3407 9375 1.757699 AGATCGTCCTTTCCAGGTAGC 59.242 52.381 0.00 0.00 41.69 3.58
3418 9387 0.108329 CCAGGTAGCACGTAGGTTGG 60.108 60.000 0.00 0.00 0.00 3.77
3430 9399 5.421277 CACGTAGGTTGGTTATTCATGGTA 58.579 41.667 0.00 0.00 0.00 3.25
3623 9592 2.610727 GCACCTCGAAGAAGCTGTAAGT 60.611 50.000 0.00 0.00 34.09 2.24
3845 9818 3.119495 ACAGTGGCTTGTTTCTGTTTGAC 60.119 43.478 0.00 0.00 37.81 3.18
3848 9821 3.128589 GTGGCTTGTTTCTGTTTGACTGA 59.871 43.478 0.00 0.00 0.00 3.41
3880 9853 3.381272 TGCTTGTTCAGAAACTCCCAAAG 59.619 43.478 0.00 0.00 36.30 2.77
3925 9899 1.604278 TCAGATGTAGGATCGCTGTCG 59.396 52.381 0.00 0.00 0.00 4.35
3954 9929 6.378582 ACTGAAATGCCACTTGTTTTATACG 58.621 36.000 0.00 0.00 0.00 3.06
4060 10035 6.577103 TCGACAAGAATGCTCAGATCTTAAT 58.423 36.000 0.00 0.00 32.38 1.40
4223 10198 0.807667 CAACGGCTGAGATTCCTCCG 60.808 60.000 0.00 0.00 38.66 4.63
4275 10250 3.124636 CGCTGTTACGTTTTCCATAAGCT 59.875 43.478 0.00 0.00 0.00 3.74
4375 10351 3.004315 ACAACTGCCAATTTTGTACCTCG 59.996 43.478 0.00 0.00 31.65 4.63
4378 10354 1.202952 TGCCAATTTTGTACCTCGGGT 60.203 47.619 1.14 1.14 40.16 5.28
4403 10379 0.108585 TCTTTTTCGCTGGGCAGAGT 59.891 50.000 0.00 0.00 0.00 3.24
4415 10391 1.673329 GGGCAGAGTTTCTCGTCTTCC 60.673 57.143 0.00 0.00 35.36 3.46
4418 10394 2.029828 GCAGAGTTTCTCGTCTTCCTGA 60.030 50.000 0.00 0.00 35.36 3.86
4422 10398 0.601558 TTTCTCGTCTTCCTGACCCG 59.398 55.000 0.00 0.00 42.49 5.28
4433 10409 0.179029 CCTGACCCGTGTTGTTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
4469 10445 4.546829 ATCATGGAAGCTTTGTGCAATT 57.453 36.364 0.00 0.00 45.94 2.32
4476 10452 4.084223 GGAAGCTTTGTGCAATTTGATGTG 60.084 41.667 0.00 0.00 45.94 3.21
4488 10464 1.608055 TTGATGTGGGCTGTGAGTTG 58.392 50.000 0.00 0.00 0.00 3.16
4537 10513 6.940298 CCAAAATTTGAGTCCTGTCCTAAGTA 59.060 38.462 7.37 0.00 0.00 2.24
4555 10531 8.336801 CCTAAGTAGGAAGCACAATTTTAAGT 57.663 34.615 0.00 0.00 46.63 2.24
4556 10532 9.444600 CCTAAGTAGGAAGCACAATTTTAAGTA 57.555 33.333 0.00 0.00 46.63 2.24
4610 10586 1.064758 GGTGCTGGTGTCATCCCATTA 60.065 52.381 0.00 0.00 0.00 1.90
4615 10591 3.316308 GCTGGTGTCATCCCATTATGTTC 59.684 47.826 0.00 0.00 0.00 3.18
4624 10600 3.469859 TCCCATTATGTTCTCCCCTTCA 58.530 45.455 0.00 0.00 0.00 3.02
4628 10604 5.069516 CCCATTATGTTCTCCCCTTCATTTG 59.930 44.000 0.00 0.00 0.00 2.32
4641 10617 4.038402 CCCTTCATTTGTTGTCTTTGCTCT 59.962 41.667 0.00 0.00 0.00 4.09
4647 10623 6.321181 TCATTTGTTGTCTTTGCTCTAGGTTT 59.679 34.615 0.00 0.00 0.00 3.27
4650 10626 5.890334 TGTTGTCTTTGCTCTAGGTTTTTG 58.110 37.500 0.00 0.00 0.00 2.44
4655 10631 6.071616 TGTCTTTGCTCTAGGTTTTTGTTTGT 60.072 34.615 0.00 0.00 0.00 2.83
4682 10658 3.813443 CGGTGAATCTGGGATTCTCAAT 58.187 45.455 17.46 0.00 0.00 2.57
4714 10892 1.691976 ACAATGAGGACGTGACTTCCA 59.308 47.619 10.92 0.00 35.33 3.53
4722 10900 4.065789 AGGACGTGACTTCCATTTTTCTC 58.934 43.478 10.92 0.00 35.33 2.87
4772 10953 2.094597 TGATCCAAATTGCAAAGGCTCG 60.095 45.455 1.71 0.00 41.91 5.03
4774 10955 1.015607 CCAAATTGCAAAGGCTCGGC 61.016 55.000 1.71 3.62 41.91 5.54
4788 10969 3.135994 GGCTCGGCGGAAATAATAAAGA 58.864 45.455 7.21 0.00 0.00 2.52
4817 10998 6.939163 AGGTAATTTACAGCCTCATCATCATC 59.061 38.462 8.73 0.00 0.00 2.92
4826 11007 5.302059 CAGCCTCATCATCATCTGGAAAAAT 59.698 40.000 0.00 0.00 0.00 1.82
4883 13134 8.381636 AGAAGAAGAAAAGGAATCTGATCTTGA 58.618 33.333 0.00 0.00 32.39 3.02
4898 13476 7.884257 TCTGATCTTGAAAATGCATGTGTTTA 58.116 30.769 0.00 0.00 0.00 2.01
4899 13477 8.358895 TCTGATCTTGAAAATGCATGTGTTTAA 58.641 29.630 0.00 0.00 0.00 1.52
4900 13478 8.296799 TGATCTTGAAAATGCATGTGTTTAAC 57.703 30.769 0.00 0.00 0.00 2.01
4934 13512 1.809133 TATGGACGGGCTTGGGATTA 58.191 50.000 0.00 0.00 0.00 1.75
4944 13522 3.317149 GGGCTTGGGATTAAATACGTTCC 59.683 47.826 0.00 0.00 0.00 3.62
5027 13626 2.100916 ACGGTGTCCATATGTCTAGTGC 59.899 50.000 1.24 0.00 0.00 4.40
5030 13629 1.068588 TGTCCATATGTCTAGTGCGGC 59.931 52.381 1.24 0.00 0.00 6.53
5039 13638 4.710695 TAGTGCGGCGTGGACGTG 62.711 66.667 9.37 0.00 44.84 4.49
5078 13683 2.292016 CAGCATCCGTGACTAGGAGTAG 59.708 54.545 0.00 0.00 41.66 2.57
5084 13689 2.015587 CGTGACTAGGAGTAGGTGTCC 58.984 57.143 0.00 0.00 0.00 4.02
5100 13705 4.124351 CCTGGCATGCACTTGCGG 62.124 66.667 21.36 6.38 45.83 5.69
5109 13714 3.964875 CACTTGCGGGTGGTGCAC 61.965 66.667 8.80 8.80 43.10 4.57
5140 13745 2.044352 TCACTCGCCCCAGATCGA 60.044 61.111 0.00 0.00 0.00 3.59
5149 13754 0.452184 CCCCAGATCGATCGATACCG 59.548 60.000 29.45 19.44 34.60 4.02
5162 13767 4.196626 TCGATACCGACAAATTTGACCT 57.803 40.909 24.64 2.04 40.30 3.85
5163 13768 5.327616 TCGATACCGACAAATTTGACCTA 57.672 39.130 24.64 9.59 40.30 3.08
5164 13769 5.909477 TCGATACCGACAAATTTGACCTAT 58.091 37.500 24.64 13.42 40.30 2.57
5165 13770 7.041635 TCGATACCGACAAATTTGACCTATA 57.958 36.000 24.64 9.72 40.30 1.31
5166 13771 7.143340 TCGATACCGACAAATTTGACCTATAG 58.857 38.462 24.64 13.37 40.30 1.31
5167 13772 7.013559 TCGATACCGACAAATTTGACCTATAGA 59.986 37.037 24.64 15.02 40.30 1.98
5168 13773 7.114529 CGATACCGACAAATTTGACCTATAGAC 59.885 40.741 24.64 7.16 38.22 2.59
5169 13774 5.107133 ACCGACAAATTTGACCTATAGACG 58.893 41.667 24.64 13.18 0.00 4.18
5170 13775 5.105635 ACCGACAAATTTGACCTATAGACGA 60.106 40.000 24.64 0.00 0.00 4.20
5171 13776 5.808540 CCGACAAATTTGACCTATAGACGAA 59.191 40.000 24.64 2.06 0.00 3.85
5172 13777 6.311935 CCGACAAATTTGACCTATAGACGAAA 59.688 38.462 24.64 0.00 0.00 3.46
5173 13778 7.011109 CCGACAAATTTGACCTATAGACGAAAT 59.989 37.037 24.64 0.00 0.00 2.17
5174 13779 8.056571 CGACAAATTTGACCTATAGACGAAATC 58.943 37.037 24.64 4.92 0.00 2.17
5175 13780 8.786826 ACAAATTTGACCTATAGACGAAATCA 57.213 30.769 24.64 0.00 0.00 2.57
5176 13781 9.226606 ACAAATTTGACCTATAGACGAAATCAA 57.773 29.630 24.64 0.00 0.00 2.57
5180 13785 9.613428 ATTTGACCTATAGACGAAATCAAATCA 57.387 29.630 0.00 0.00 39.78 2.57
5181 13786 8.420374 TTGACCTATAGACGAAATCAAATCAC 57.580 34.615 0.00 0.00 0.00 3.06
5182 13787 7.552459 TGACCTATAGACGAAATCAAATCACA 58.448 34.615 0.00 0.00 0.00 3.58
5183 13788 7.706607 TGACCTATAGACGAAATCAAATCACAG 59.293 37.037 0.00 0.00 0.00 3.66
5184 13789 7.782049 ACCTATAGACGAAATCAAATCACAGA 58.218 34.615 0.00 0.00 0.00 3.41
5185 13790 8.258007 ACCTATAGACGAAATCAAATCACAGAA 58.742 33.333 0.00 0.00 0.00 3.02
5186 13791 9.265901 CCTATAGACGAAATCAAATCACAGAAT 57.734 33.333 0.00 0.00 0.00 2.40
5188 13793 8.722480 ATAGACGAAATCAAATCACAGAATGA 57.278 30.769 0.00 0.00 43.13 2.57
5189 13794 7.439157 AGACGAAATCAAATCACAGAATGAA 57.561 32.000 0.00 0.00 41.93 2.57
5190 13795 7.301054 AGACGAAATCAAATCACAGAATGAAC 58.699 34.615 0.00 0.00 41.93 3.18
5191 13796 7.173907 AGACGAAATCAAATCACAGAATGAACT 59.826 33.333 0.00 0.00 41.93 3.01
5192 13797 7.080099 ACGAAATCAAATCACAGAATGAACTG 58.920 34.615 0.00 0.00 41.93 3.16
5200 13805 3.469008 ACAGAATGAACTGTCCGTGAA 57.531 42.857 0.00 0.00 46.36 3.18
5201 13806 3.804036 ACAGAATGAACTGTCCGTGAAA 58.196 40.909 0.00 0.00 46.36 2.69
5202 13807 3.560068 ACAGAATGAACTGTCCGTGAAAC 59.440 43.478 0.00 0.00 46.36 2.78
5203 13808 3.809832 CAGAATGAACTGTCCGTGAAACT 59.190 43.478 0.00 0.00 39.69 2.66
5204 13809 4.988540 CAGAATGAACTGTCCGTGAAACTA 59.011 41.667 0.00 0.00 39.69 2.24
5205 13810 5.639506 CAGAATGAACTGTCCGTGAAACTAT 59.360 40.000 0.00 0.00 39.69 2.12
5206 13811 6.147821 CAGAATGAACTGTCCGTGAAACTATT 59.852 38.462 0.00 0.00 39.69 1.73
5207 13812 6.710744 AGAATGAACTGTCCGTGAAACTATTT 59.289 34.615 0.00 0.00 31.75 1.40
5208 13813 5.917541 TGAACTGTCCGTGAAACTATTTC 57.082 39.130 0.00 0.00 40.08 2.17
5209 13814 5.361427 TGAACTGTCCGTGAAACTATTTCA 58.639 37.500 0.00 0.00 46.68 2.69
5216 13821 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
5217 13822 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
5218 13823 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
5219 13824 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
5220 13825 0.739813 ACTATTTCACGCGGCTGACC 60.740 55.000 12.47 0.00 0.00 4.02
5221 13826 1.429148 CTATTTCACGCGGCTGACCC 61.429 60.000 12.47 0.00 0.00 4.46
5232 13837 4.514577 CTGACCCGTGGCGCCTAG 62.515 72.222 29.70 20.71 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 88 1.153901 GTTAGCTACGCAGGTCGCA 60.154 57.895 0.00 0.00 42.60 5.10
81 89 1.140407 CTGTTAGCTACGCAGGTCGC 61.140 60.000 13.84 0.00 43.23 5.19
82 90 1.140407 GCTGTTAGCTACGCAGGTCG 61.140 60.000 19.96 3.17 40.42 4.79
83 91 2.666989 GCTGTTAGCTACGCAGGTC 58.333 57.895 19.96 6.53 38.45 3.85
84 92 4.913126 GCTGTTAGCTACGCAGGT 57.087 55.556 19.96 0.00 38.45 4.00
265 273 2.507102 CACCGCTGTAGCTGTCGG 60.507 66.667 13.64 13.64 46.61 4.79
288 302 4.530857 CAGGTAAGCGCCTCCGGG 62.531 72.222 2.29 0.00 36.58 5.73
415 438 1.276421 GTCAGGTAAAGCAGAGGAGCA 59.724 52.381 0.00 0.00 36.85 4.26
416 439 1.406205 GGTCAGGTAAAGCAGAGGAGC 60.406 57.143 0.00 0.00 0.00 4.70
417 440 1.134965 CGGTCAGGTAAAGCAGAGGAG 60.135 57.143 0.00 0.00 0.00 3.69
429 452 0.316204 CAACGGAACTACGGTCAGGT 59.684 55.000 0.00 0.00 38.39 4.00
461 484 0.453950 TAAACTGTCGCGAGCTCGTC 60.454 55.000 34.46 25.11 42.22 4.20
462 485 0.039798 TTAAACTGTCGCGAGCTCGT 60.040 50.000 34.46 16.48 42.22 4.18
463 486 0.635731 CTTAAACTGTCGCGAGCTCG 59.364 55.000 31.37 31.37 43.27 5.03
464 487 0.367210 GCTTAAACTGTCGCGAGCTC 59.633 55.000 10.24 2.73 0.00 4.09
465 488 0.038159 AGCTTAAACTGTCGCGAGCT 60.038 50.000 10.24 9.56 35.78 4.09
466 489 0.093705 CAGCTTAAACTGTCGCGAGC 59.906 55.000 10.24 6.86 32.78 5.03
467 490 1.387084 GTCAGCTTAAACTGTCGCGAG 59.613 52.381 10.24 0.00 38.84 5.03
468 491 1.000607 AGTCAGCTTAAACTGTCGCGA 60.001 47.619 3.71 3.71 38.84 5.87
469 492 1.387084 GAGTCAGCTTAAACTGTCGCG 59.613 52.381 0.00 0.00 38.84 5.87
490 513 1.787847 CCAGGCTGCGTTAAACTCG 59.212 57.895 9.56 0.00 0.00 4.18
491 514 1.234615 TGCCAGGCTGCGTTAAACTC 61.235 55.000 14.15 0.00 0.00 3.01
508 531 1.742268 GACCCATCTCTTCTTTGCTGC 59.258 52.381 0.00 0.00 0.00 5.25
509 532 2.005451 CGACCCATCTCTTCTTTGCTG 58.995 52.381 0.00 0.00 0.00 4.41
510 533 1.902508 TCGACCCATCTCTTCTTTGCT 59.097 47.619 0.00 0.00 0.00 3.91
523 2762 2.423898 GCCCTTCTCGATCGACCCA 61.424 63.158 15.15 0.00 0.00 4.51
527 2766 0.460311 GAAAGGCCCTTCTCGATCGA 59.540 55.000 18.32 18.32 0.00 3.59
575 2814 6.007703 TCCACGAGGGATGAAAATAAGTTTT 58.992 36.000 0.00 0.00 42.15 2.43
592 2831 2.286294 GCTCTGCAAACATATCCACGAG 59.714 50.000 0.00 0.00 0.00 4.18
623 2862 7.377766 ACTAATCAACTAGTAAACGGTACGA 57.622 36.000 0.00 0.00 42.04 3.43
625 2864 9.840427 TGTAACTAATCAACTAGTAAACGGTAC 57.160 33.333 0.00 0.00 31.72 3.34
630 2869 9.635520 TCTGCTGTAACTAATCAACTAGTAAAC 57.364 33.333 0.00 0.00 31.72 2.01
635 2874 8.709386 AACATCTGCTGTAACTAATCAACTAG 57.291 34.615 0.00 0.00 36.98 2.57
684 2925 7.596248 TCATCTACTGTAACTTGTAAAACGGAC 59.404 37.037 0.00 0.00 0.00 4.79
695 2936 7.093858 GGAGGTTAGTGTCATCTACTGTAACTT 60.094 40.741 0.00 0.00 32.17 2.66
696 2937 6.377712 GGAGGTTAGTGTCATCTACTGTAACT 59.622 42.308 0.00 0.00 32.17 2.24
697 2938 6.405619 GGGAGGTTAGTGTCATCTACTGTAAC 60.406 46.154 0.00 0.00 0.00 2.50
698 2939 5.655532 GGGAGGTTAGTGTCATCTACTGTAA 59.344 44.000 0.00 0.00 0.00 2.41
699 2940 5.198965 GGGAGGTTAGTGTCATCTACTGTA 58.801 45.833 0.00 0.00 0.00 2.74
700 2941 4.024670 GGGAGGTTAGTGTCATCTACTGT 58.975 47.826 0.00 0.00 0.00 3.55
701 2942 3.066900 CGGGAGGTTAGTGTCATCTACTG 59.933 52.174 0.00 0.00 0.00 2.74
702 2943 3.288964 CGGGAGGTTAGTGTCATCTACT 58.711 50.000 0.00 0.00 0.00 2.57
703 2944 3.022406 ACGGGAGGTTAGTGTCATCTAC 58.978 50.000 0.00 0.00 0.00 2.59
704 2945 3.021695 CACGGGAGGTTAGTGTCATCTA 58.978 50.000 0.00 0.00 0.00 1.98
705 2946 1.825474 CACGGGAGGTTAGTGTCATCT 59.175 52.381 0.00 0.00 0.00 2.90
706 2947 1.134788 CCACGGGAGGTTAGTGTCATC 60.135 57.143 0.00 0.00 34.34 2.92
707 2948 0.902531 CCACGGGAGGTTAGTGTCAT 59.097 55.000 0.00 0.00 34.34 3.06
715 2995 0.831307 GAGCTAATCCACGGGAGGTT 59.169 55.000 0.00 0.00 34.05 3.50
731 3011 2.505118 GCACGTCCTGTCGAGAGC 60.505 66.667 3.56 0.00 34.70 4.09
760 3728 4.202050 ACAGGTTTTGAGAAATGAGTGTGC 60.202 41.667 0.00 0.00 0.00 4.57
772 3740 4.763793 ACAGGATTCATCACAGGTTTTGAG 59.236 41.667 0.00 0.00 0.00 3.02
783 3752 4.002982 CGTTCTTTCCACAGGATTCATCA 58.997 43.478 0.00 0.00 0.00 3.07
802 3771 5.812642 GTGATCCTGAACTGAATGTATCGTT 59.187 40.000 0.00 0.00 0.00 3.85
905 3918 9.950680 ACTGTATTTGTGCAGTTTATATAATGC 57.049 29.630 12.28 12.28 42.61 3.56
910 3923 8.560355 TGTGACTGTATTTGTGCAGTTTATAT 57.440 30.769 0.91 0.00 44.89 0.86
911 3924 7.971183 TGTGACTGTATTTGTGCAGTTTATA 57.029 32.000 0.91 0.00 44.89 0.98
912 3925 6.875948 TGTGACTGTATTTGTGCAGTTTAT 57.124 33.333 0.91 0.00 44.89 1.40
913 3926 6.685527 TTGTGACTGTATTTGTGCAGTTTA 57.314 33.333 0.91 0.00 44.89 2.01
914 3927 5.574891 TTGTGACTGTATTTGTGCAGTTT 57.425 34.783 0.91 0.00 44.89 2.66
915 3928 5.574891 TTTGTGACTGTATTTGTGCAGTT 57.425 34.783 0.91 0.00 44.89 3.16
917 3930 6.303022 CGTATTTTGTGACTGTATTTGTGCAG 59.697 38.462 0.00 0.00 38.58 4.41
918 3931 6.139435 CGTATTTTGTGACTGTATTTGTGCA 58.861 36.000 0.00 0.00 0.00 4.57
919 3932 5.567534 CCGTATTTTGTGACTGTATTTGTGC 59.432 40.000 0.00 0.00 0.00 4.57
922 3935 6.893759 TGACCGTATTTTGTGACTGTATTTG 58.106 36.000 0.00 0.00 0.00 2.32
923 3936 7.389330 TGATGACCGTATTTTGTGACTGTATTT 59.611 33.333 0.00 0.00 0.00 1.40
925 3938 6.403049 TGATGACCGTATTTTGTGACTGTAT 58.597 36.000 0.00 0.00 0.00 2.29
927 3940 4.637276 TGATGACCGTATTTTGTGACTGT 58.363 39.130 0.00 0.00 0.00 3.55
928 3941 4.690748 ACTGATGACCGTATTTTGTGACTG 59.309 41.667 0.00 0.00 0.00 3.51
929 3942 4.894784 ACTGATGACCGTATTTTGTGACT 58.105 39.130 0.00 0.00 0.00 3.41
930 3943 5.607119 AACTGATGACCGTATTTTGTGAC 57.393 39.130 0.00 0.00 0.00 3.67
931 3944 4.387559 CGAACTGATGACCGTATTTTGTGA 59.612 41.667 0.00 0.00 0.00 3.58
932 3945 4.637968 CGAACTGATGACCGTATTTTGTG 58.362 43.478 0.00 0.00 0.00 3.33
933 3946 3.124636 GCGAACTGATGACCGTATTTTGT 59.875 43.478 0.00 0.00 0.00 2.83
934 3947 3.370978 AGCGAACTGATGACCGTATTTTG 59.629 43.478 0.00 0.00 0.00 2.44
935 3948 3.596214 AGCGAACTGATGACCGTATTTT 58.404 40.909 0.00 0.00 0.00 1.82
983 5345 1.931172 GCATTGATCACAGGCAAATGC 59.069 47.619 9.77 9.77 41.14 3.56
984 5346 2.546778 GGCATTGATCACAGGCAAATG 58.453 47.619 13.36 6.18 32.45 2.32
985 5347 1.483415 GGGCATTGATCACAGGCAAAT 59.517 47.619 18.16 0.00 32.45 2.32
987 5349 0.251698 TGGGCATTGATCACAGGCAA 60.252 50.000 18.16 7.59 32.45 4.52
988 5350 0.966875 GTGGGCATTGATCACAGGCA 60.967 55.000 18.16 5.68 32.45 4.75
989 5351 0.966875 TGTGGGCATTGATCACAGGC 60.967 55.000 10.65 10.65 36.61 4.85
1018 6175 1.454479 CAACTGGGCCCCATAGCTG 60.454 63.158 22.27 8.07 30.82 4.24
1020 6177 2.834968 GCAACTGGGCCCCATAGC 60.835 66.667 22.27 15.18 30.82 2.97
1120 6300 2.045045 TGGGGAGATTTGCGGCTG 60.045 61.111 0.00 0.00 0.00 4.85
1482 6675 7.542477 CGCTAAAACTGATAGAACGGATATCAT 59.458 37.037 4.83 0.00 38.59 2.45
1490 6693 6.007677 GTGTTTCGCTAAAACTGATAGAACG 58.992 40.000 11.40 0.00 46.19 3.95
1491 6694 6.073440 TGGTGTTTCGCTAAAACTGATAGAAC 60.073 38.462 11.40 2.10 46.19 3.01
1500 6703 3.978855 GGTGAATGGTGTTTCGCTAAAAC 59.021 43.478 5.00 5.00 46.22 2.43
1507 6710 1.209127 GCCGGTGAATGGTGTTTCG 59.791 57.895 1.90 0.00 0.00 3.46
1514 6717 1.304052 TTGGAAGGCCGGTGAATGG 60.304 57.895 1.90 0.00 36.79 3.16
1534 6737 3.933886 AGCCTAGAGGATTCAATGGAGA 58.066 45.455 0.00 0.00 37.39 3.71
1547 6750 3.317993 GGAGAACAGCTAGAAGCCTAGAG 59.682 52.174 0.00 0.00 43.77 2.43
1583 6790 4.141158 AGGCCAACCCTATCTTAATTCCAG 60.141 45.833 5.01 0.00 44.08 3.86
1592 6799 0.695803 CCTGGAGGCCAACCCTATCT 60.696 60.000 5.01 0.00 46.60 1.98
1670 6885 4.636206 ACAACTTGAGGAGAAGAACACAAC 59.364 41.667 0.00 0.00 0.00 3.32
1672 6887 4.487714 ACAACTTGAGGAGAAGAACACA 57.512 40.909 0.00 0.00 0.00 3.72
1684 6899 3.316029 TCAGCCATGTCAAACAACTTGAG 59.684 43.478 0.00 0.00 44.83 3.02
1686 6901 3.713858 TCAGCCATGTCAAACAACTTG 57.286 42.857 0.00 0.00 36.25 3.16
1719 6934 7.520798 TGGATATGCATTGGAGAATAACTTCT 58.479 34.615 3.54 0.00 44.53 2.85
1720 6935 7.750229 TGGATATGCATTGGAGAATAACTTC 57.250 36.000 3.54 0.00 0.00 3.01
1721 6936 8.582437 CAATGGATATGCATTGGAGAATAACTT 58.418 33.333 31.55 3.97 35.73 2.66
1725 6940 6.660521 GGACAATGGATATGCATTGGAGAATA 59.339 38.462 37.44 1.00 41.60 1.75
1726 6941 5.479375 GGACAATGGATATGCATTGGAGAAT 59.521 40.000 37.44 24.42 41.60 2.40
1728 6943 4.401022 GGACAATGGATATGCATTGGAGA 58.599 43.478 37.44 3.07 41.60 3.71
1729 6944 3.189910 CGGACAATGGATATGCATTGGAG 59.810 47.826 37.44 27.84 41.60 3.86
1730 6945 3.148412 CGGACAATGGATATGCATTGGA 58.852 45.455 37.44 4.46 41.60 3.53
1731 6946 2.229543 CCGGACAATGGATATGCATTGG 59.770 50.000 37.44 25.83 41.60 3.16
1738 7007 3.214328 GAACAAGCCGGACAATGGATAT 58.786 45.455 5.05 0.00 0.00 1.63
1775 7044 3.296628 CCGAAACAGTGACATTTTTCCG 58.703 45.455 0.00 0.00 0.00 4.30
1795 7064 7.506971 ACACTAACTAAAGGATATGGTTAGCC 58.493 38.462 8.97 0.00 41.42 3.93
1870 7139 2.890311 CCATCACAGCCCAAAACAACTA 59.110 45.455 0.00 0.00 0.00 2.24
1875 7144 2.231235 CCTAACCATCACAGCCCAAAAC 59.769 50.000 0.00 0.00 0.00 2.43
1883 7152 4.899502 AGTGAAGTTCCTAACCATCACAG 58.100 43.478 19.74 0.00 44.61 3.66
1900 7181 8.971073 TCAGATATGTGATGTTCTTCTAGTGAA 58.029 33.333 0.00 0.00 0.00 3.18
1911 7192 7.121611 TGCAAAGTTGATCAGATATGTGATGTT 59.878 33.333 19.32 5.54 37.29 2.71
1915 7196 6.656270 AGTTGCAAAGTTGATCAGATATGTGA 59.344 34.615 4.85 4.85 0.00 3.58
1960 7241 2.423446 CGTATCTCCTGCAGCCCC 59.577 66.667 8.66 0.00 0.00 5.80
2000 7281 7.868415 CCTATCTCTAACAGCCTAACATAACAC 59.132 40.741 0.00 0.00 0.00 3.32
2012 7293 7.349412 TCCTAAACTTCCTATCTCTAACAGC 57.651 40.000 0.00 0.00 0.00 4.40
2087 7684 8.315220 TCCTAATTTAACCAGACCCTTACTAG 57.685 38.462 0.00 0.00 0.00 2.57
2088 7685 8.683776 TTCCTAATTTAACCAGACCCTTACTA 57.316 34.615 0.00 0.00 0.00 1.82
2202 7799 4.521130 TCTGCTACACACTAGTCCTTTG 57.479 45.455 0.00 0.00 0.00 2.77
2223 7820 9.965902 AACTATTCTCTTGTTACCTGATTCAAT 57.034 29.630 0.00 0.00 0.00 2.57
2234 7831 7.665559 ACAGATTGGCAAACTATTCTCTTGTTA 59.334 33.333 9.84 0.00 0.00 2.41
2262 7859 3.535561 CAGAACATAGCTTTGGGACGAT 58.464 45.455 9.08 0.00 0.00 3.73
2353 7950 9.705290 GGGAAATCAACTAAGAAATAAAAAGCA 57.295 29.630 0.00 0.00 0.00 3.91
2367 7964 5.546499 ACAGTTAGGACAGGGAAATCAACTA 59.454 40.000 0.00 0.00 0.00 2.24
2381 7978 6.039616 TCAAATGTTTTGCAACAGTTAGGAC 58.960 36.000 0.00 0.00 46.78 3.85
2554 8156 3.375699 TGGTTAAGGGTGCAAAGGAAAA 58.624 40.909 0.00 0.00 0.00 2.29
2556 8158 2.091555 ACTGGTTAAGGGTGCAAAGGAA 60.092 45.455 0.00 0.00 0.00 3.36
2557 8159 1.497286 ACTGGTTAAGGGTGCAAAGGA 59.503 47.619 0.00 0.00 0.00 3.36
2558 8160 1.613437 CACTGGTTAAGGGTGCAAAGG 59.387 52.381 0.00 0.00 0.00 3.11
2580 8182 6.822442 TGTGAAGTTCATAAGTCTAACACCA 58.178 36.000 9.18 0.00 0.00 4.17
2622 8224 7.906327 AGCACCACATAATTGTTAAAAGGAAT 58.094 30.769 0.00 0.00 32.34 3.01
2632 8234 3.312421 GCACGATAGCACCACATAATTGT 59.688 43.478 0.00 0.00 42.67 2.71
2637 8239 3.572255 TGATAGCACGATAGCACCACATA 59.428 43.478 0.00 0.00 42.67 2.29
2644 8246 6.084326 TCTTTACATGATAGCACGATAGCA 57.916 37.500 0.00 0.00 42.67 3.49
2645 8247 6.420903 TGTTCTTTACATGATAGCACGATAGC 59.579 38.462 0.00 0.00 42.67 2.97
2646 8248 7.435192 TGTGTTCTTTACATGATAGCACGATAG 59.565 37.037 0.00 0.00 39.39 2.08
2647 8249 7.262048 TGTGTTCTTTACATGATAGCACGATA 58.738 34.615 0.00 0.00 39.39 2.92
2648 8250 6.106003 TGTGTTCTTTACATGATAGCACGAT 58.894 36.000 0.00 0.00 39.39 3.73
2649 8251 5.474825 TGTGTTCTTTACATGATAGCACGA 58.525 37.500 0.00 0.00 39.39 4.35
2650 8252 5.778161 TGTGTTCTTTACATGATAGCACG 57.222 39.130 0.00 0.00 39.39 5.34
2719 8321 4.142447 CCCCGATACTGATAAGTGTATCCG 60.142 50.000 0.00 0.00 40.90 4.18
2726 8328 5.480772 CCTTATCACCCCGATACTGATAAGT 59.519 44.000 18.55 0.00 45.51 2.24
2756 8358 9.314321 CAGAAATGACTTATTTACGTATCCACT 57.686 33.333 0.00 0.00 39.06 4.00
2757 8359 9.309516 TCAGAAATGACTTATTTACGTATCCAC 57.690 33.333 0.00 0.00 39.06 4.02
2772 8374 1.160137 GGCGCTGTTCAGAAATGACT 58.840 50.000 7.64 0.00 0.00 3.41
2785 8387 2.111043 ATCCCCGTATTGGCGCTG 59.889 61.111 7.64 0.00 35.87 5.18
2803 8405 5.396750 TGTTTTCAAAAATAGGCAAACGC 57.603 34.783 0.00 0.00 0.00 4.84
2875 8477 3.550437 AGATAATGGACTGCACTGACC 57.450 47.619 0.00 0.00 0.00 4.02
2907 8624 6.690530 TCTTGCTTTTGTTGGAATAATGGAG 58.309 36.000 0.00 0.00 0.00 3.86
2972 8689 0.753848 CTCCTCCTCCCTTCGTCTCC 60.754 65.000 0.00 0.00 0.00 3.71
2977 8694 1.456705 CCTCCTCCTCCTCCCTTCG 60.457 68.421 0.00 0.00 0.00 3.79
2978 8695 1.074850 CCCTCCTCCTCCTCCCTTC 60.075 68.421 0.00 0.00 0.00 3.46
2996 8713 3.813443 TCTAATGGAAGGCTGCTGATTC 58.187 45.455 0.00 2.10 0.00 2.52
3134 8864 1.141591 GCAACCGTGTACCCGTATCG 61.142 60.000 0.00 0.00 0.00 2.92
3155 8886 7.383687 ACTATCAAGAAAACACCGATACTTCA 58.616 34.615 0.00 0.00 0.00 3.02
3407 9375 4.258543 ACCATGAATAACCAACCTACGTG 58.741 43.478 0.00 0.00 0.00 4.49
3430 9399 4.080582 TCCTTACGGATGATTGGTGATGTT 60.081 41.667 0.00 0.00 33.30 2.71
3446 9415 9.663904 CAATTGAATACAATATTGGTCCTTACG 57.336 33.333 19.37 0.00 44.67 3.18
3467 9436 8.246180 ACTGGAGTTTAACTGATATTGCAATTG 58.754 33.333 18.75 0.00 0.00 2.32
3489 9458 4.832248 TGAGCCTGAATAAACAGTACTGG 58.168 43.478 26.12 9.07 36.30 4.00
3653 9623 3.305516 CCTGGGCAAGTGTTGGGC 61.306 66.667 0.00 0.00 0.00 5.36
3867 9840 9.642343 AAAAATAAGTCTACTTTGGGAGTTTCT 57.358 29.630 0.00 0.00 39.86 2.52
3925 9899 4.584327 ACAAGTGGCATTTCAGTTTACC 57.416 40.909 0.00 0.00 0.00 2.85
3954 9929 5.751243 ACAAGTCATTACACCAGTTGTTC 57.249 39.130 0.00 0.00 39.91 3.18
4060 10035 6.475504 TCTTCTTTCTCCATTTGCATGTCTA 58.524 36.000 0.00 0.00 0.00 2.59
4153 10128 2.032528 CACTGGCCTCGGCTTTCA 59.967 61.111 3.32 0.00 41.60 2.69
4275 10250 4.694982 CCATCCATGCGCACATAATAACTA 59.305 41.667 14.90 0.00 33.67 2.24
4375 10351 2.163613 CCAGCGAAAAAGAATACCACCC 59.836 50.000 0.00 0.00 0.00 4.61
4378 10354 1.816224 GCCCAGCGAAAAAGAATACCA 59.184 47.619 0.00 0.00 0.00 3.25
4415 10391 0.944386 CAGGAAACAACACGGGTCAG 59.056 55.000 0.00 0.00 0.00 3.51
4418 10394 1.385528 GAACAGGAAACAACACGGGT 58.614 50.000 0.00 0.00 0.00 5.28
4422 10398 2.034001 CGTCTCGAACAGGAAACAACAC 60.034 50.000 0.00 0.00 0.00 3.32
4433 10409 3.193903 TCCATGATTTACCGTCTCGAACA 59.806 43.478 0.00 0.00 0.00 3.18
4469 10445 1.133823 ACAACTCACAGCCCACATCAA 60.134 47.619 0.00 0.00 0.00 2.57
4476 10452 0.668535 GTTTCCACAACTCACAGCCC 59.331 55.000 0.00 0.00 0.00 5.19
4488 10464 1.355210 CACACGGTGCAGTTTCCAC 59.645 57.895 8.30 0.00 0.00 4.02
4509 10485 5.701224 AGGACAGGACTCAAATTTTGGTTA 58.299 37.500 9.18 0.00 0.00 2.85
4537 10513 6.015434 CCCAAGTACTTAAAATTGTGCTTCCT 60.015 38.462 8.04 0.00 37.09 3.36
4553 10529 6.016276 CACAAACATAAAGCTTCCCAAGTACT 60.016 38.462 0.00 0.00 0.00 2.73
4554 10530 6.149633 CACAAACATAAAGCTTCCCAAGTAC 58.850 40.000 0.00 0.00 0.00 2.73
4555 10531 5.830991 ACACAAACATAAAGCTTCCCAAGTA 59.169 36.000 0.00 0.00 0.00 2.24
4556 10532 4.649218 ACACAAACATAAAGCTTCCCAAGT 59.351 37.500 0.00 0.00 0.00 3.16
4610 10586 4.482990 ACAACAAATGAAGGGGAGAACAT 58.517 39.130 0.00 0.00 0.00 2.71
4615 10591 4.797275 GCAAAGACAACAAATGAAGGGGAG 60.797 45.833 0.00 0.00 0.00 4.30
4624 10600 6.715347 AAACCTAGAGCAAAGACAACAAAT 57.285 33.333 0.00 0.00 0.00 2.32
4628 10604 5.891451 ACAAAAACCTAGAGCAAAGACAAC 58.109 37.500 0.00 0.00 0.00 3.32
4641 10617 2.480416 CGCCTGCACAAACAAAAACCTA 60.480 45.455 0.00 0.00 0.00 3.08
4647 10623 1.140589 CACCGCCTGCACAAACAAA 59.859 52.632 0.00 0.00 0.00 2.83
4650 10626 0.387239 GATTCACCGCCTGCACAAAC 60.387 55.000 0.00 0.00 0.00 2.93
4655 10631 2.046023 CCAGATTCACCGCCTGCA 60.046 61.111 0.00 0.00 0.00 4.41
4682 10658 4.320129 CGTCCTCATTGTTGTATGTTTGCA 60.320 41.667 0.00 0.00 0.00 4.08
4714 10892 6.607198 TCTTCCCACTTCAGTTTGAGAAAAAT 59.393 34.615 0.00 0.00 0.00 1.82
4722 10900 3.142174 GGTCTCTTCCCACTTCAGTTTG 58.858 50.000 0.00 0.00 0.00 2.93
4772 10953 6.635030 ACCTGAATCTTTATTATTTCCGCC 57.365 37.500 0.00 0.00 0.00 6.13
4788 10969 6.662755 TGATGAGGCTGTAAATTACCTGAAT 58.337 36.000 0.00 0.00 30.95 2.57
4846 11027 6.100424 TCCTTTTCTTCTTCTCTTCTCAAGGT 59.900 38.462 0.00 0.00 0.00 3.50
4883 13134 7.809806 GCTTCTAGAGTTAAACACATGCATTTT 59.190 33.333 0.00 0.00 0.00 1.82
4898 13476 5.221145 CGTCCATATCACTGCTTCTAGAGTT 60.221 44.000 0.00 0.00 0.00 3.01
4899 13477 4.277174 CGTCCATATCACTGCTTCTAGAGT 59.723 45.833 0.00 0.00 0.00 3.24
4900 13478 4.320861 CCGTCCATATCACTGCTTCTAGAG 60.321 50.000 0.00 0.00 0.00 2.43
4934 13512 3.326880 ACCTGGAAGTCTGGAACGTATTT 59.673 43.478 0.00 0.00 37.82 1.40
4944 13522 3.134458 GTTCACTTGACCTGGAAGTCTG 58.866 50.000 0.00 0.00 37.66 3.51
5027 13626 2.968156 TTTTCCACGTCCACGCCG 60.968 61.111 0.00 0.00 44.43 6.46
5039 13638 2.159517 GCTGATGGTCATGTCGTTTTCC 60.160 50.000 0.00 0.00 0.00 3.13
5078 13683 1.604593 AAGTGCATGCCAGGACACC 60.605 57.895 16.68 0.00 33.46 4.16
5084 13689 4.124351 CCCGCAAGTGCATGCCAG 62.124 66.667 16.68 3.24 43.47 4.85
5109 13714 0.387878 GAGTGACCTGTCTCTGCGTG 60.388 60.000 6.60 0.00 34.03 5.34
5149 13754 8.879759 TGATTTCGTCTATAGGTCAAATTTGTC 58.120 33.333 17.47 12.07 0.00 3.18
5150 13755 8.786826 TGATTTCGTCTATAGGTCAAATTTGT 57.213 30.769 17.47 1.67 0.00 2.83
5154 13759 9.613428 TGATTTGATTTCGTCTATAGGTCAAAT 57.387 29.630 17.06 17.06 43.48 2.32
5155 13760 8.879759 GTGATTTGATTTCGTCTATAGGTCAAA 58.120 33.333 0.00 7.93 38.14 2.69
5156 13761 8.038351 TGTGATTTGATTTCGTCTATAGGTCAA 58.962 33.333 0.00 0.00 0.00 3.18
5157 13762 7.552459 TGTGATTTGATTTCGTCTATAGGTCA 58.448 34.615 0.00 0.00 0.00 4.02
5158 13763 7.921214 TCTGTGATTTGATTTCGTCTATAGGTC 59.079 37.037 0.00 0.00 0.00 3.85
5159 13764 7.782049 TCTGTGATTTGATTTCGTCTATAGGT 58.218 34.615 0.00 0.00 0.00 3.08
5160 13765 8.648557 TTCTGTGATTTGATTTCGTCTATAGG 57.351 34.615 0.00 0.00 0.00 2.57
5162 13767 9.816354 TCATTCTGTGATTTGATTTCGTCTATA 57.184 29.630 0.00 0.00 0.00 1.31
5163 13768 8.722480 TCATTCTGTGATTTGATTTCGTCTAT 57.278 30.769 0.00 0.00 0.00 1.98
5164 13769 8.443160 GTTCATTCTGTGATTTGATTTCGTCTA 58.557 33.333 0.00 0.00 36.54 2.59
5165 13770 7.173907 AGTTCATTCTGTGATTTGATTTCGTCT 59.826 33.333 0.00 0.00 36.54 4.18
5166 13771 7.269937 CAGTTCATTCTGTGATTTGATTTCGTC 59.730 37.037 0.00 0.00 36.54 4.20
5167 13772 7.080099 CAGTTCATTCTGTGATTTGATTTCGT 58.920 34.615 0.00 0.00 36.54 3.85
5168 13773 7.080099 ACAGTTCATTCTGTGATTTGATTTCG 58.920 34.615 0.00 0.00 45.40 3.46
5169 13774 7.540055 GGACAGTTCATTCTGTGATTTGATTTC 59.460 37.037 4.06 0.00 46.81 2.17
5170 13775 7.373493 GGACAGTTCATTCTGTGATTTGATTT 58.627 34.615 4.06 0.00 46.81 2.17
5171 13776 6.348786 CGGACAGTTCATTCTGTGATTTGATT 60.349 38.462 4.06 0.00 46.81 2.57
5172 13777 5.122869 CGGACAGTTCATTCTGTGATTTGAT 59.877 40.000 4.06 0.00 46.81 2.57
5173 13778 4.452114 CGGACAGTTCATTCTGTGATTTGA 59.548 41.667 4.06 0.00 46.81 2.69
5174 13779 4.214119 ACGGACAGTTCATTCTGTGATTTG 59.786 41.667 4.06 0.00 46.81 2.32
5175 13780 4.389374 ACGGACAGTTCATTCTGTGATTT 58.611 39.130 4.06 0.00 46.81 2.17
5176 13781 4.008074 ACGGACAGTTCATTCTGTGATT 57.992 40.909 4.06 0.00 46.81 2.57
5177 13782 3.685139 ACGGACAGTTCATTCTGTGAT 57.315 42.857 4.06 0.00 46.81 3.06
5179 13784 2.754472 TCACGGACAGTTCATTCTGTG 58.246 47.619 4.06 4.48 46.81 3.66
5181 13786 3.809832 AGTTTCACGGACAGTTCATTCTG 59.190 43.478 0.00 0.00 40.80 3.02
5182 13787 4.073293 AGTTTCACGGACAGTTCATTCT 57.927 40.909 0.00 0.00 0.00 2.40
5183 13788 6.481954 AATAGTTTCACGGACAGTTCATTC 57.518 37.500 0.00 0.00 0.00 2.67
5184 13789 6.485313 TGAAATAGTTTCACGGACAGTTCATT 59.515 34.615 1.24 0.00 44.21 2.57
5185 13790 5.995282 TGAAATAGTTTCACGGACAGTTCAT 59.005 36.000 1.24 0.00 44.21 2.57
5186 13791 5.361427 TGAAATAGTTTCACGGACAGTTCA 58.639 37.500 1.24 0.00 44.21 3.18
5187 13792 5.917541 TGAAATAGTTTCACGGACAGTTC 57.082 39.130 1.24 0.00 44.21 3.01
5197 13802 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
5198 13803 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
5199 13804 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
5200 13805 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
5201 13806 0.739813 GGTCAGCCGCGTGAAATAGT 60.740 55.000 4.92 0.00 0.00 2.12
5202 13807 1.429148 GGGTCAGCCGCGTGAAATAG 61.429 60.000 4.92 0.00 34.97 1.73
5203 13808 1.448893 GGGTCAGCCGCGTGAAATA 60.449 57.895 4.92 0.00 34.97 1.40
5204 13809 2.746277 GGGTCAGCCGCGTGAAAT 60.746 61.111 4.92 0.00 34.97 2.17
5215 13820 4.514577 CTAGGCGCCACGGGTCAG 62.515 72.222 31.54 9.46 0.00 3.51
5220 13825 4.577246 GAGAGCTAGGCGCCACGG 62.577 72.222 31.54 18.60 40.39 4.94
5221 13826 3.764810 CTGAGAGCTAGGCGCCACG 62.765 68.421 31.54 19.97 40.39 4.94
5222 13827 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
5223 13828 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.