Multiple sequence alignment - TraesCS5D01G283400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G283400 chr5D 100.000 3254 0 0 1 3254 384470219 384473472 0.000000e+00 6010.0
1 TraesCS5D01G283400 chr5D 83.957 187 22 8 1622 1804 520910454 520910636 4.320000e-39 172.0
2 TraesCS5D01G283400 chr5D 96.970 33 1 0 2690 2722 6109662 6109694 4.540000e-04 56.5
3 TraesCS5D01G283400 chr5A 92.649 1578 73 18 678 2230 485375204 485376763 0.000000e+00 2231.0
4 TraesCS5D01G283400 chr5A 93.933 445 21 1 2810 3254 485380703 485381141 0.000000e+00 667.0
5 TraesCS5D01G283400 chr5A 84.545 550 37 32 180 697 485374415 485374948 4.850000e-138 501.0
6 TraesCS5D01G283400 chr5A 98.969 97 1 0 1 97 485374320 485374416 1.200000e-39 174.0
7 TraesCS5D01G283400 chr5A 83.957 187 22 8 1622 1804 649441929 649442111 4.320000e-39 172.0
8 TraesCS5D01G283400 chr5A 95.000 100 5 0 2618 2717 485380124 485380223 1.210000e-34 158.0
9 TraesCS5D01G283400 chr5A 80.976 205 33 4 1639 1839 537626572 537626774 1.210000e-34 158.0
10 TraesCS5D01G283400 chr5B 90.821 1645 71 35 1017 2633 461292353 461293945 0.000000e+00 2128.0
11 TraesCS5D01G283400 chr5B 84.255 470 23 21 2817 3254 461295958 461296408 8.400000e-111 411.0
12 TraesCS5D01G283400 chr5B 84.615 182 20 8 1627 1804 656926279 656926456 1.200000e-39 174.0
13 TraesCS5D01G283400 chr5B 82.039 206 29 6 1639 1839 512213105 512213307 5.580000e-38 169.0
14 TraesCS5D01G283400 chr5B 93.827 81 5 0 2618 2698 461293972 461294052 4.410000e-24 122.0
15 TraesCS5D01G283400 chr7B 77.311 833 123 50 1052 1839 199282430 199283241 6.450000e-117 431.0
16 TraesCS5D01G283400 chr7B 82.474 194 26 7 1594 1783 709511167 709511356 2.600000e-36 163.0
17 TraesCS5D01G283400 chr7B 75.556 135 30 2 1289 1420 709510961 709511095 2.710000e-06 63.9
18 TraesCS5D01G283400 chr7D 76.698 854 124 57 1033 1839 227566020 227566845 3.910000e-109 405.0
19 TraesCS5D01G283400 chr7D 81.443 194 28 5 1594 1783 616252927 616253116 5.620000e-33 152.0
20 TraesCS5D01G283400 chr7D 80.093 216 31 10 1594 1803 616223399 616223190 2.020000e-32 150.0
21 TraesCS5D01G283400 chr7D 77.372 137 28 2 1289 1422 616252721 616252857 9.680000e-11 78.7
22 TraesCS5D01G283400 chr7D 77.519 129 26 2 1295 1420 616223599 616223471 1.250000e-09 75.0
23 TraesCS5D01G283400 chr7D 93.182 44 1 2 2693 2735 591483275 591483317 2.710000e-06 63.9
24 TraesCS5D01G283400 chr7D 97.222 36 1 0 2694 2729 22260969 22260934 9.750000e-06 62.1
25 TraesCS5D01G283400 chr7A 79.339 484 58 29 1052 1505 239756008 239756479 5.280000e-78 302.0
26 TraesCS5D01G283400 chr7A 76.296 135 29 2 1289 1420 709261907 709262041 5.830000e-08 69.4
27 TraesCS5D01G283400 chr7A 100.000 31 0 0 2696 2726 670549716 670549746 1.260000e-04 58.4
28 TraesCS5D01G283400 chr6D 90.805 87 5 2 96 181 454580684 454580600 2.650000e-21 113.0
29 TraesCS5D01G283400 chr4A 88.506 87 7 2 96 181 720072050 720071966 5.740000e-18 102.0
30 TraesCS5D01G283400 chr1B 97.368 38 0 1 2692 2729 30728301 30728265 2.710000e-06 63.9
31 TraesCS5D01G283400 chr1B 92.857 42 3 0 2688 2729 686792436 686792395 9.750000e-06 62.1
32 TraesCS5D01G283400 chr6A 92.857 42 3 0 2689 2730 552996949 552996990 9.750000e-06 62.1
33 TraesCS5D01G283400 chr2B 100.000 33 0 0 2694 2726 785613847 785613879 9.750000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G283400 chr5D 384470219 384473472 3253 False 6010.0 6010 100.000000 1 3254 1 chr5D.!!$F2 3253
1 TraesCS5D01G283400 chr5A 485374320 485381141 6821 False 746.2 2231 93.019200 1 3254 5 chr5A.!!$F3 3253
2 TraesCS5D01G283400 chr5B 461292353 461296408 4055 False 887.0 2128 89.634333 1017 3254 3 chr5B.!!$F3 2237
3 TraesCS5D01G283400 chr7B 199282430 199283241 811 False 431.0 431 77.311000 1052 1839 1 chr7B.!!$F1 787
4 TraesCS5D01G283400 chr7D 227566020 227566845 825 False 405.0 405 76.698000 1033 1839 1 chr7D.!!$F1 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
878 1198 0.251634 CTTGCCCTCACTCTCTTCCC 59.748 60.0 0.0 0.0 0.0 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2284 2680 0.038159 AGCTTAAACTGTCGCGAGCT 60.038 50.0 10.24 9.56 35.78 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 4.802999 CCTCCTGAAAGCATCTTCAAAAC 58.197 43.478 0.00 0.00 34.96 2.43
97 98 7.867403 TCCTGAAAGCATCTTCAAAACAATTAC 59.133 33.333 0.00 0.00 34.96 1.89
98 99 7.869429 CCTGAAAGCATCTTCAAAACAATTACT 59.131 33.333 0.00 0.00 34.96 2.24
99 100 8.801715 TGAAAGCATCTTCAAAACAATTACTC 57.198 30.769 0.00 0.00 32.39 2.59
100 101 7.867403 TGAAAGCATCTTCAAAACAATTACTCC 59.133 33.333 0.00 0.00 32.39 3.85
101 102 6.272822 AGCATCTTCAAAACAATTACTCCC 57.727 37.500 0.00 0.00 0.00 4.30
102 103 6.012745 AGCATCTTCAAAACAATTACTCCCT 58.987 36.000 0.00 0.00 0.00 4.20
103 104 6.151817 AGCATCTTCAAAACAATTACTCCCTC 59.848 38.462 0.00 0.00 0.00 4.30
104 105 6.625960 GCATCTTCAAAACAATTACTCCCTCC 60.626 42.308 0.00 0.00 0.00 4.30
105 106 5.001232 TCTTCAAAACAATTACTCCCTCCG 58.999 41.667 0.00 0.00 0.00 4.63
106 107 4.360951 TCAAAACAATTACTCCCTCCGT 57.639 40.909 0.00 0.00 0.00 4.69
107 108 4.320870 TCAAAACAATTACTCCCTCCGTC 58.679 43.478 0.00 0.00 0.00 4.79
108 109 4.041198 TCAAAACAATTACTCCCTCCGTCT 59.959 41.667 0.00 0.00 0.00 4.18
109 110 3.889520 AACAATTACTCCCTCCGTCTC 57.110 47.619 0.00 0.00 0.00 3.36
110 111 2.816411 ACAATTACTCCCTCCGTCTCA 58.184 47.619 0.00 0.00 0.00 3.27
111 112 3.375699 ACAATTACTCCCTCCGTCTCAT 58.624 45.455 0.00 0.00 0.00 2.90
112 113 3.133003 ACAATTACTCCCTCCGTCTCATG 59.867 47.826 0.00 0.00 0.00 3.07
113 114 2.820728 TTACTCCCTCCGTCTCATGA 57.179 50.000 0.00 0.00 0.00 3.07
114 115 3.314307 TTACTCCCTCCGTCTCATGAT 57.686 47.619 0.00 0.00 0.00 2.45
115 116 1.407936 ACTCCCTCCGTCTCATGATG 58.592 55.000 0.00 0.00 0.00 3.07
116 117 1.342474 ACTCCCTCCGTCTCATGATGT 60.342 52.381 0.00 0.00 0.00 3.06
117 118 2.091830 ACTCCCTCCGTCTCATGATGTA 60.092 50.000 0.00 0.00 0.00 2.29
118 119 2.959030 CTCCCTCCGTCTCATGATGTAA 59.041 50.000 0.00 0.00 0.00 2.41
119 120 2.959030 TCCCTCCGTCTCATGATGTAAG 59.041 50.000 0.00 0.00 0.00 2.34
120 121 2.959030 CCCTCCGTCTCATGATGTAAGA 59.041 50.000 0.00 0.00 0.00 2.10
121 122 3.576118 CCCTCCGTCTCATGATGTAAGAT 59.424 47.826 0.00 0.00 0.00 2.40
122 123 4.554292 CCTCCGTCTCATGATGTAAGATG 58.446 47.826 0.00 0.00 0.00 2.90
123 124 4.038522 CCTCCGTCTCATGATGTAAGATGT 59.961 45.833 0.00 0.00 0.00 3.06
124 125 5.452496 CCTCCGTCTCATGATGTAAGATGTT 60.452 44.000 0.00 0.00 0.00 2.71
125 126 5.977635 TCCGTCTCATGATGTAAGATGTTT 58.022 37.500 0.00 0.00 0.00 2.83
126 127 6.406370 TCCGTCTCATGATGTAAGATGTTTT 58.594 36.000 0.00 0.00 0.00 2.43
127 128 6.878923 TCCGTCTCATGATGTAAGATGTTTTT 59.121 34.615 0.00 0.00 0.00 1.94
170 171 6.564709 AAAAACGTCTTTACCTTATGGGAC 57.435 37.500 0.00 0.00 38.76 4.46
171 172 3.515330 ACGTCTTTACCTTATGGGACG 57.485 47.619 17.02 17.02 44.28 4.79
172 173 2.167075 ACGTCTTTACCTTATGGGACGG 59.833 50.000 20.39 9.04 43.58 4.79
173 174 2.428171 CGTCTTTACCTTATGGGACGGA 59.572 50.000 13.10 0.00 39.18 4.69
174 175 3.490419 CGTCTTTACCTTATGGGACGGAG 60.490 52.174 13.10 0.00 39.18 4.63
175 176 3.036091 TCTTTACCTTATGGGACGGAGG 58.964 50.000 0.00 0.00 38.76 4.30
176 177 1.797320 TTACCTTATGGGACGGAGGG 58.203 55.000 0.00 0.00 38.76 4.30
177 178 0.935942 TACCTTATGGGACGGAGGGA 59.064 55.000 0.00 0.00 38.76 4.20
178 179 0.398664 ACCTTATGGGACGGAGGGAG 60.399 60.000 0.00 0.00 38.76 4.30
179 180 0.398664 CCTTATGGGACGGAGGGAGT 60.399 60.000 0.00 0.00 37.23 3.85
180 181 1.133262 CCTTATGGGACGGAGGGAGTA 60.133 57.143 0.00 0.00 37.23 2.59
204 205 6.271488 TGTCATAAGCTTCCCAAAATTCTG 57.729 37.500 0.00 0.00 0.00 3.02
205 206 6.009589 TGTCATAAGCTTCCCAAAATTCTGA 58.990 36.000 0.00 0.00 0.00 3.27
206 207 6.151648 TGTCATAAGCTTCCCAAAATTCTGAG 59.848 38.462 0.00 0.00 0.00 3.35
229 230 6.944234 GCTTATTTAGCTGAAGGGTATGTT 57.056 37.500 0.00 0.00 46.77 2.71
230 231 6.729187 GCTTATTTAGCTGAAGGGTATGTTG 58.271 40.000 0.00 0.00 46.77 3.33
265 266 6.767524 TGTGGAACATTGTACTGTTTCTTT 57.232 33.333 7.56 0.00 45.67 2.52
268 269 7.132863 GTGGAACATTGTACTGTTTCTTTCTC 58.867 38.462 7.56 0.00 44.52 2.87
269 270 6.018262 TGGAACATTGTACTGTTTCTTTCTCG 60.018 38.462 7.56 0.00 39.40 4.04
271 272 6.920569 ACATTGTACTGTTTCTTTCTCGTT 57.079 33.333 0.00 0.00 0.00 3.85
273 274 4.789095 TGTACTGTTTCTTTCTCGTTGC 57.211 40.909 0.00 0.00 0.00 4.17
274 275 4.439057 TGTACTGTTTCTTTCTCGTTGCT 58.561 39.130 0.00 0.00 0.00 3.91
275 276 4.506654 TGTACTGTTTCTTTCTCGTTGCTC 59.493 41.667 0.00 0.00 0.00 4.26
276 277 3.531538 ACTGTTTCTTTCTCGTTGCTCA 58.468 40.909 0.00 0.00 0.00 4.26
323 324 8.988934 TGATTCCGATAATCGAAATTAAAGAGG 58.011 33.333 0.00 0.00 43.74 3.69
324 325 7.724305 TTCCGATAATCGAAATTAAAGAGGG 57.276 36.000 0.00 0.00 43.74 4.30
325 326 7.058023 TCCGATAATCGAAATTAAAGAGGGA 57.942 36.000 0.00 0.00 43.74 4.20
326 327 7.502696 TCCGATAATCGAAATTAAAGAGGGAA 58.497 34.615 0.00 0.00 43.74 3.97
327 328 7.988599 TCCGATAATCGAAATTAAAGAGGGAAA 59.011 33.333 0.00 0.00 43.74 3.13
328 329 8.784043 CCGATAATCGAAATTAAAGAGGGAAAT 58.216 33.333 0.00 0.00 43.74 2.17
329 330 9.813080 CGATAATCGAAATTAAAGAGGGAAATC 57.187 33.333 0.00 0.00 43.74 2.17
332 333 7.809546 ATCGAAATTAAAGAGGGAAATCTCC 57.190 36.000 0.00 0.00 41.59 3.71
333 334 6.717289 TCGAAATTAAAGAGGGAAATCTCCA 58.283 36.000 0.00 0.00 44.51 3.86
334 335 6.823689 TCGAAATTAAAGAGGGAAATCTCCAG 59.176 38.462 0.00 0.00 44.51 3.86
391 432 5.453567 AATTTCAACAAACAGCTACCTCC 57.546 39.130 0.00 0.00 0.00 4.30
392 433 2.163818 TCAACAAACAGCTACCTCCG 57.836 50.000 0.00 0.00 0.00 4.63
393 434 1.414919 TCAACAAACAGCTACCTCCGT 59.585 47.619 0.00 0.00 0.00 4.69
394 435 2.629137 TCAACAAACAGCTACCTCCGTA 59.371 45.455 0.00 0.00 0.00 4.02
456 497 6.305638 CAGTAAAAGAAAGAGCCAATTTACGC 59.694 38.462 0.00 0.00 37.95 4.42
464 505 2.227865 GAGCCAATTTACGCCACTGAAA 59.772 45.455 0.00 0.00 0.00 2.69
517 559 3.827008 TGCTCTATCCTGAATGACACC 57.173 47.619 0.00 0.00 0.00 4.16
530 572 5.255687 TGAATGACACCTGTGATTGCTAAT 58.744 37.500 3.94 0.00 32.15 1.73
584 626 0.326264 GATGTGTCCTGTCCTGCCTT 59.674 55.000 0.00 0.00 0.00 4.35
592 638 2.067932 CTGTCCTGCCTTCCCACCAA 62.068 60.000 0.00 0.00 0.00 3.67
603 649 0.467290 TCCCACCAACTGAAACCTGC 60.467 55.000 0.00 0.00 0.00 4.85
640 686 2.670789 GCGCCATAGTTTGCATGAACAA 60.671 45.455 0.00 0.00 31.94 2.83
660 706 4.161565 ACAAGTTCAGACTGTACACCTCAA 59.838 41.667 13.87 0.00 35.91 3.02
661 707 4.592485 AGTTCAGACTGTACACCTCAAG 57.408 45.455 13.87 0.00 33.99 3.02
668 717 4.896482 AGACTGTACACCTCAAGGATATCC 59.104 45.833 14.41 14.41 38.94 2.59
673 722 1.770658 CACCTCAAGGATATCCAGCCA 59.229 52.381 23.81 3.75 38.89 4.75
697 746 3.399440 AAGCCTTGAGACTCACAGAAG 57.601 47.619 4.15 0.00 0.00 2.85
732 1052 5.009631 TGTTTGACCAGGAATCAAGGTATG 58.990 41.667 0.00 0.00 37.38 2.39
760 1080 4.534500 TCCTTTGGGTCTATCTAACTGCAA 59.466 41.667 0.00 0.00 0.00 4.08
878 1198 0.251634 CTTGCCCTCACTCTCTTCCC 59.748 60.000 0.00 0.00 0.00 3.97
922 1243 3.077359 CCTCGCAATGTCTTCTTCCTTT 58.923 45.455 0.00 0.00 0.00 3.11
923 1244 3.120060 CCTCGCAATGTCTTCTTCCTTTG 60.120 47.826 0.00 0.00 0.00 2.77
933 1254 3.257375 TCTTCTTCCTTTGTTCCGATCGA 59.743 43.478 18.66 0.00 0.00 3.59
945 1266 2.390696 TCCGATCGAGACCCCATTTTA 58.609 47.619 18.66 0.00 0.00 1.52
946 1267 2.969950 TCCGATCGAGACCCCATTTTAT 59.030 45.455 18.66 0.00 0.00 1.40
951 1272 4.417426 TCGAGACCCCATTTTATCTTCC 57.583 45.455 0.00 0.00 0.00 3.46
953 1274 3.136626 CGAGACCCCATTTTATCTTCCCT 59.863 47.826 0.00 0.00 0.00 4.20
995 1319 1.271217 GGGTTTTCCGTAGCCAAGTCT 60.271 52.381 0.00 0.00 41.82 3.24
1011 1335 2.060383 TCTCACCATGGGAGAGCCG 61.060 63.158 24.22 8.95 39.64 5.52
1179 1509 2.911509 TCCACGACGGGGTTCGAA 60.912 61.111 17.38 0.00 41.78 3.71
1529 1886 2.286872 CTCCAGTGAACATCTCATGCC 58.713 52.381 0.00 0.00 36.14 4.40
1569 1930 0.471191 TTGCCGGCTCTGATGATCAT 59.529 50.000 29.70 8.25 0.00 2.45
1572 1933 0.954449 CCGGCTCTGATGATCATGGC 60.954 60.000 14.30 9.97 0.00 4.40
1885 2266 2.222931 CGTGGCAAACATACATACACGG 60.223 50.000 0.00 0.00 44.32 4.94
2084 2465 3.366739 CTTACCCACCGCCGACCTC 62.367 68.421 0.00 0.00 0.00 3.85
2107 2488 2.434359 GCTACAGCGGTGGTGGAC 60.434 66.667 20.20 0.00 35.13 4.02
2190 2577 1.081774 GATGAGGATCTCGTCGGCG 60.082 63.158 1.15 1.15 36.89 6.46
2191 2578 1.507974 GATGAGGATCTCGTCGGCGA 61.508 60.000 13.29 13.29 45.79 5.54
2235 2631 3.800863 CTTCCGCTGCTGCTGCTG 61.801 66.667 25.43 20.27 40.48 4.41
2248 2644 0.392193 GCTGCTGCTCCTCTGCTTTA 60.392 55.000 8.53 0.00 39.95 1.85
2258 2654 1.822990 CCTCTGCTTTACCTGACCGTA 59.177 52.381 0.00 0.00 0.00 4.02
2269 2665 1.005867 TGACCGTAGTTCCGTTGCC 60.006 57.895 0.00 0.00 0.00 4.52
2270 2666 1.739196 GACCGTAGTTCCGTTGCCC 60.739 63.158 0.00 0.00 0.00 5.36
2271 2667 2.812178 CCGTAGTTCCGTTGCCCG 60.812 66.667 0.00 0.00 0.00 6.13
2309 2705 1.727335 GCGACAGTTTAAGCTGACTCC 59.273 52.381 24.12 9.25 39.62 3.85
2310 2706 1.986378 CGACAGTTTAAGCTGACTCCG 59.014 52.381 24.12 16.36 39.62 4.63
2328 4944 1.502190 GAGTTTAACGCAGCCTGGC 59.498 57.895 11.65 11.65 0.00 4.85
2342 4958 1.954258 GCCTGGCAGCAAAGAAGAGAT 60.954 52.381 15.17 0.00 0.00 2.75
2346 4962 1.615384 GGCAGCAAAGAAGAGATGGGT 60.615 52.381 0.00 0.00 0.00 4.51
2394 5010 1.539388 GTTGGATGTTTGCACGATCCA 59.461 47.619 14.00 14.00 43.19 3.41
2411 5027 6.751888 CACGATCCAAAACTTATTTTCATCCC 59.248 38.462 0.00 0.00 35.79 3.85
2442 5058 3.754965 TGTTTGCAGAGCTCCAACTTAT 58.245 40.909 10.93 0.00 0.00 1.73
2444 5060 2.299993 TGCAGAGCTCCAACTTATCG 57.700 50.000 10.93 0.00 0.00 2.92
2449 5065 2.358267 AGAGCTCCAACTTATCGTACCG 59.642 50.000 10.93 0.00 0.00 4.02
2454 5070 4.266265 GCTCCAACTTATCGTACCGTTTAC 59.734 45.833 0.00 0.00 0.00 2.01
2503 5121 3.493503 GGCGACTAATTGTAAAGATCGGG 59.506 47.826 0.00 0.00 0.00 5.14
2514 5132 3.405823 AAAGATCGGGTCCGTTTTACA 57.594 42.857 9.36 0.00 40.74 2.41
2515 5133 3.405823 AAGATCGGGTCCGTTTTACAA 57.594 42.857 9.36 0.00 40.74 2.41
2516 5134 2.968675 AGATCGGGTCCGTTTTACAAG 58.031 47.619 9.36 0.00 40.74 3.16
2517 5135 2.301009 AGATCGGGTCCGTTTTACAAGT 59.699 45.455 9.36 0.00 40.74 3.16
2518 5136 2.618442 TCGGGTCCGTTTTACAAGTT 57.382 45.000 9.36 0.00 40.74 2.66
2519 5137 3.742433 TCGGGTCCGTTTTACAAGTTA 57.258 42.857 9.36 0.00 40.74 2.24
2520 5138 3.389221 TCGGGTCCGTTTTACAAGTTAC 58.611 45.455 9.36 0.00 40.74 2.50
2521 5139 3.129871 CGGGTCCGTTTTACAAGTTACA 58.870 45.455 0.55 0.00 34.35 2.41
2522 5140 3.184986 CGGGTCCGTTTTACAAGTTACAG 59.815 47.826 0.55 0.00 34.35 2.74
2523 5141 4.129380 GGGTCCGTTTTACAAGTTACAGT 58.871 43.478 0.00 0.00 0.00 3.55
2524 5142 5.296748 GGGTCCGTTTTACAAGTTACAGTA 58.703 41.667 0.00 0.00 0.00 2.74
2525 5143 5.406477 GGGTCCGTTTTACAAGTTACAGTAG 59.594 44.000 0.00 0.00 0.00 2.57
2526 5144 6.215845 GGTCCGTTTTACAAGTTACAGTAGA 58.784 40.000 0.00 0.00 0.00 2.59
2550 5207 2.764572 ACACTAACCTCCCGTGGATTAG 59.235 50.000 9.78 9.78 33.13 1.73
2567 5224 1.645704 TAGCTCTCGACAGGACGTGC 61.646 60.000 0.00 0.00 34.70 5.34
2579 5924 1.196130 GGACGTGCGTTCGGTATACG 61.196 60.000 0.00 0.00 46.11 3.06
2591 5936 3.441163 TCGGTATACGCACACTCATTTC 58.559 45.455 0.00 0.00 43.86 2.17
2602 5948 4.202050 GCACACTCATTTCTCAAAACCTGT 60.202 41.667 0.00 0.00 0.00 4.00
2621 5967 4.566278 CCTGTGATGAATCCTGTGGAAAGA 60.566 45.833 0.00 0.00 34.34 2.52
2706 6096 7.923414 AATACACTCACAAAATTACTCCCTC 57.077 36.000 0.00 0.00 0.00 4.30
2725 6115 9.833917 ACTCCCTCTGTAAACTAATATAAAAGC 57.166 33.333 0.00 0.00 0.00 3.51
2726 6116 9.832445 CTCCCTCTGTAAACTAATATAAAAGCA 57.168 33.333 0.00 0.00 0.00 3.91
2754 6144 6.875948 ATAAACTGCACAAATACAGTCACA 57.124 33.333 0.00 0.00 46.17 3.58
2790 7529 4.391216 CAGTTCGCTCACTTTCATCAATCT 59.609 41.667 0.00 0.00 0.00 2.40
2791 7530 5.578336 CAGTTCGCTCACTTTCATCAATCTA 59.422 40.000 0.00 0.00 0.00 1.98
2792 7531 5.809562 AGTTCGCTCACTTTCATCAATCTAG 59.190 40.000 0.00 0.00 0.00 2.43
2793 7532 5.582689 TCGCTCACTTTCATCAATCTAGA 57.417 39.130 0.00 0.00 0.00 2.43
2796 7535 6.873605 TCGCTCACTTTCATCAATCTAGAAAA 59.126 34.615 0.00 0.00 31.59 2.29
2797 7536 7.550551 TCGCTCACTTTCATCAATCTAGAAAAT 59.449 33.333 0.00 0.00 31.59 1.82
2798 7537 8.180267 CGCTCACTTTCATCAATCTAGAAAATT 58.820 33.333 0.00 0.00 31.59 1.82
2799 7538 9.286946 GCTCACTTTCATCAATCTAGAAAATTG 57.713 33.333 0.00 0.00 35.81 2.32
2800 7539 9.286946 CTCACTTTCATCAATCTAGAAAATTGC 57.713 33.333 0.00 0.00 34.73 3.56
2802 7541 7.219535 CACTTTCATCAATCTAGAAAATTGCGG 59.780 37.037 0.00 0.00 34.73 5.69
2803 7542 5.173774 TCATCAATCTAGAAAATTGCGGC 57.826 39.130 0.00 0.00 34.73 6.53
2804 7543 4.639755 TCATCAATCTAGAAAATTGCGGCA 59.360 37.500 0.00 0.00 34.73 5.69
2806 7545 5.581126 TCAATCTAGAAAATTGCGGCATT 57.419 34.783 2.28 0.00 34.73 3.56
2807 7546 5.964758 TCAATCTAGAAAATTGCGGCATTT 58.035 33.333 2.28 3.53 34.73 2.32
2808 7547 5.806502 TCAATCTAGAAAATTGCGGCATTTG 59.193 36.000 2.28 0.00 34.73 2.32
2837 8371 0.968405 AATGCCCACATGGTCAACAC 59.032 50.000 0.00 0.00 36.36 3.32
2839 8373 0.822944 TGCCCACATGGTCAACACAG 60.823 55.000 0.00 0.00 36.04 3.66
2843 8377 2.618816 CCCACATGGTCAACACAGCTAT 60.619 50.000 0.00 0.00 0.00 2.97
2939 8496 1.810030 GCGAGGTCACGATCCAACC 60.810 63.158 0.00 0.00 35.09 3.77
3114 8684 3.062466 CCCGTCCGCAGTCTCTGA 61.062 66.667 0.66 0.00 32.44 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 3.384789 TCATGAGACGGAGGGAGTAATTG 59.615 47.826 0.00 0.00 0.00 2.32
97 98 1.407936 ACATCATGAGACGGAGGGAG 58.592 55.000 0.09 0.00 0.00 4.30
98 99 2.748209 TACATCATGAGACGGAGGGA 57.252 50.000 0.09 0.00 0.00 4.20
99 100 2.959030 TCTTACATCATGAGACGGAGGG 59.041 50.000 0.09 0.00 0.00 4.30
100 101 4.038522 ACATCTTACATCATGAGACGGAGG 59.961 45.833 0.09 0.59 0.00 4.30
101 102 5.193663 ACATCTTACATCATGAGACGGAG 57.806 43.478 0.09 0.00 0.00 4.63
102 103 5.598416 AACATCTTACATCATGAGACGGA 57.402 39.130 0.09 0.00 0.00 4.69
103 104 6.668541 AAAACATCTTACATCATGAGACGG 57.331 37.500 0.09 0.00 0.00 4.79
147 148 5.179929 CGTCCCATAAGGTAAAGACGTTTTT 59.820 40.000 9.22 9.22 39.49 1.94
148 149 4.692155 CGTCCCATAAGGTAAAGACGTTTT 59.308 41.667 5.64 0.00 39.49 2.43
149 150 4.248058 CGTCCCATAAGGTAAAGACGTTT 58.752 43.478 5.64 0.00 39.49 3.60
150 151 3.368739 CCGTCCCATAAGGTAAAGACGTT 60.369 47.826 10.99 0.00 41.39 3.99
151 152 2.167075 CCGTCCCATAAGGTAAAGACGT 59.833 50.000 10.99 0.00 41.39 4.34
152 153 2.428171 TCCGTCCCATAAGGTAAAGACG 59.572 50.000 6.56 6.56 42.10 4.18
153 154 3.181468 CCTCCGTCCCATAAGGTAAAGAC 60.181 52.174 0.00 0.00 36.75 3.01
154 155 3.036091 CCTCCGTCCCATAAGGTAAAGA 58.964 50.000 0.00 0.00 36.75 2.52
155 156 2.104281 CCCTCCGTCCCATAAGGTAAAG 59.896 54.545 0.00 0.00 36.75 1.85
156 157 2.121129 CCCTCCGTCCCATAAGGTAAA 58.879 52.381 0.00 0.00 36.75 2.01
157 158 1.291637 TCCCTCCGTCCCATAAGGTAA 59.708 52.381 0.00 0.00 36.75 2.85
158 159 0.935942 TCCCTCCGTCCCATAAGGTA 59.064 55.000 0.00 0.00 36.75 3.08
159 160 0.398664 CTCCCTCCGTCCCATAAGGT 60.399 60.000 0.00 0.00 36.75 3.50
160 161 0.398664 ACTCCCTCCGTCCCATAAGG 60.399 60.000 0.00 0.00 0.00 2.69
161 162 2.376695 TACTCCCTCCGTCCCATAAG 57.623 55.000 0.00 0.00 0.00 1.73
162 163 2.090943 ACATACTCCCTCCGTCCCATAA 60.091 50.000 0.00 0.00 0.00 1.90
163 164 1.502039 ACATACTCCCTCCGTCCCATA 59.498 52.381 0.00 0.00 0.00 2.74
164 165 0.264955 ACATACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
165 166 0.396695 GACATACTCCCTCCGTCCCA 60.397 60.000 0.00 0.00 0.00 4.37
166 167 0.396695 TGACATACTCCCTCCGTCCC 60.397 60.000 0.00 0.00 0.00 4.46
167 168 1.705873 ATGACATACTCCCTCCGTCC 58.294 55.000 0.00 0.00 0.00 4.79
168 169 3.305471 GCTTATGACATACTCCCTCCGTC 60.305 52.174 0.00 0.00 0.00 4.79
169 170 2.628657 GCTTATGACATACTCCCTCCGT 59.371 50.000 0.00 0.00 0.00 4.69
170 171 2.894126 AGCTTATGACATACTCCCTCCG 59.106 50.000 0.00 0.00 0.00 4.63
171 172 4.262678 GGAAGCTTATGACATACTCCCTCC 60.263 50.000 0.00 0.00 0.00 4.30
172 173 4.262678 GGGAAGCTTATGACATACTCCCTC 60.263 50.000 16.86 4.21 0.00 4.30
173 174 3.648545 GGGAAGCTTATGACATACTCCCT 59.351 47.826 16.86 2.50 0.00 4.20
174 175 3.391296 TGGGAAGCTTATGACATACTCCC 59.609 47.826 17.10 17.10 0.00 4.30
175 176 4.689612 TGGGAAGCTTATGACATACTCC 57.310 45.455 0.00 0.00 0.00 3.85
176 177 7.573968 ATTTTGGGAAGCTTATGACATACTC 57.426 36.000 0.00 0.00 0.00 2.59
177 178 7.836183 AGAATTTTGGGAAGCTTATGACATACT 59.164 33.333 0.00 0.00 0.00 2.12
178 179 7.917505 CAGAATTTTGGGAAGCTTATGACATAC 59.082 37.037 0.00 0.00 0.00 2.39
179 180 7.833682 TCAGAATTTTGGGAAGCTTATGACATA 59.166 33.333 0.00 0.00 0.00 2.29
180 181 6.664816 TCAGAATTTTGGGAAGCTTATGACAT 59.335 34.615 0.00 0.00 0.00 3.06
224 225 7.229506 TGTTCCACATAATGACAACACAACATA 59.770 33.333 0.00 0.00 30.20 2.29
226 227 5.358160 TGTTCCACATAATGACAACACAACA 59.642 36.000 0.00 0.00 30.20 3.33
227 228 5.826586 TGTTCCACATAATGACAACACAAC 58.173 37.500 0.00 0.00 30.20 3.32
228 229 6.647334 ATGTTCCACATAATGACAACACAA 57.353 33.333 0.00 0.00 36.99 3.33
229 230 6.040278 ACAATGTTCCACATAATGACAACACA 59.960 34.615 0.00 0.00 37.97 3.72
230 231 6.446318 ACAATGTTCCACATAATGACAACAC 58.554 36.000 0.00 0.00 37.97 3.32
264 265 4.215399 CCCTTTACAAATGAGCAACGAGAA 59.785 41.667 0.00 0.00 0.00 2.87
265 266 3.751175 CCCTTTACAAATGAGCAACGAGA 59.249 43.478 0.00 0.00 0.00 4.04
268 269 2.228822 AGCCCTTTACAAATGAGCAACG 59.771 45.455 0.00 0.00 0.00 4.10
269 270 3.942130 AGCCCTTTACAAATGAGCAAC 57.058 42.857 0.00 0.00 0.00 4.17
271 272 3.230134 ACAAGCCCTTTACAAATGAGCA 58.770 40.909 0.00 0.00 0.00 4.26
273 274 6.575162 AAGTACAAGCCCTTTACAAATGAG 57.425 37.500 0.00 0.00 0.00 2.90
274 275 6.547880 TCAAAGTACAAGCCCTTTACAAATGA 59.452 34.615 0.00 0.00 30.06 2.57
275 276 6.744112 TCAAAGTACAAGCCCTTTACAAATG 58.256 36.000 0.00 0.00 30.06 2.32
276 277 6.969993 TCAAAGTACAAGCCCTTTACAAAT 57.030 33.333 0.00 0.00 30.06 2.32
318 319 4.171234 TCAGTTCTGGAGATTTCCCTCTT 58.829 43.478 0.00 0.00 43.33 2.85
319 320 3.796111 TCAGTTCTGGAGATTTCCCTCT 58.204 45.455 0.00 0.00 43.33 3.69
320 321 4.559862 TTCAGTTCTGGAGATTTCCCTC 57.440 45.455 0.00 0.00 43.33 4.30
321 322 6.642733 TTATTCAGTTCTGGAGATTTCCCT 57.357 37.500 0.00 0.00 43.33 4.20
322 323 7.176690 TGTTTTATTCAGTTCTGGAGATTTCCC 59.823 37.037 0.00 0.00 43.33 3.97
323 324 8.110860 TGTTTTATTCAGTTCTGGAGATTTCC 57.889 34.615 0.00 0.00 44.31 3.13
326 327 9.965902 AGTATGTTTTATTCAGTTCTGGAGATT 57.034 29.630 0.00 0.00 0.00 2.40
329 330 9.877178 ACTAGTATGTTTTATTCAGTTCTGGAG 57.123 33.333 0.00 0.00 0.00 3.86
374 415 1.878953 ACGGAGGTAGCTGTTTGTTG 58.121 50.000 0.00 0.00 0.00 3.33
424 465 8.635765 TTGGCTCTTTCTTTTACTGAATACAT 57.364 30.769 0.00 0.00 0.00 2.29
425 466 8.635765 ATTGGCTCTTTCTTTTACTGAATACA 57.364 30.769 0.00 0.00 0.00 2.29
426 467 9.914131 AAATTGGCTCTTTCTTTTACTGAATAC 57.086 29.630 0.00 0.00 0.00 1.89
456 497 0.680618 TTTGGCTGCCATTTCAGTGG 59.319 50.000 24.03 0.00 42.35 4.00
483 524 4.512944 GGATAGAGCATGAAAATTCTGCGA 59.487 41.667 0.00 3.85 36.84 5.10
485 526 5.530171 TCAGGATAGAGCATGAAAATTCTGC 59.470 40.000 0.00 8.56 34.07 4.26
489 530 7.558807 TGTCATTCAGGATAGAGCATGAAAATT 59.441 33.333 0.00 0.00 41.20 1.82
530 572 7.714813 TCCAATGCAGAAACGAAGATATTATCA 59.285 33.333 6.46 0.00 0.00 2.15
584 626 0.467290 GCAGGTTTCAGTTGGTGGGA 60.467 55.000 0.00 0.00 0.00 4.37
592 638 1.963338 GCAGAGCGCAGGTTTCAGT 60.963 57.895 11.47 0.00 39.88 3.41
620 666 2.917701 TGTTCATGCAAACTATGGCG 57.082 45.000 0.00 0.00 0.00 5.69
640 686 3.322254 CCTTGAGGTGTACAGTCTGAACT 59.678 47.826 6.91 0.00 35.60 3.01
660 706 2.373502 GGCTTACTTGGCTGGATATCCT 59.626 50.000 22.35 3.05 36.82 3.24
661 707 2.373502 AGGCTTACTTGGCTGGATATCC 59.626 50.000 15.39 15.39 41.44 2.59
673 722 3.898123 TCTGTGAGTCTCAAGGCTTACTT 59.102 43.478 3.51 0.00 41.00 2.24
688 737 6.271488 ACATTCTCTTCTCTCTTCTGTGAG 57.729 41.667 0.00 0.00 35.72 3.51
697 746 4.934602 CCTGGTCAAACATTCTCTTCTCTC 59.065 45.833 0.00 0.00 0.00 3.20
732 1052 6.819146 CAGTTAGATAGACCCAAAGGAGAAAC 59.181 42.308 0.00 0.00 36.73 2.78
760 1080 5.253096 TGGCCTAGGGAAGAAGAAATTTACT 59.747 40.000 11.72 0.00 0.00 2.24
762 1082 5.506708 GTGGCCTAGGGAAGAAGAAATTTA 58.493 41.667 11.72 0.00 0.00 1.40
763 1083 4.344978 GTGGCCTAGGGAAGAAGAAATTT 58.655 43.478 11.72 0.00 0.00 1.82
764 1084 3.309193 GGTGGCCTAGGGAAGAAGAAATT 60.309 47.826 11.72 0.00 0.00 1.82
830 1150 1.634973 TCAAGGCATCAACCATGGAGA 59.365 47.619 21.47 16.25 32.37 3.71
833 1153 1.411246 CCATCAAGGCATCAACCATGG 59.589 52.381 11.19 11.19 32.37 3.66
878 1198 8.286191 AGGATGCTTACAAGATTTAAAGAAGG 57.714 34.615 0.00 0.00 0.00 3.46
922 1243 0.686441 ATGGGGTCTCGATCGGAACA 60.686 55.000 16.41 11.14 0.00 3.18
923 1244 0.464452 AATGGGGTCTCGATCGGAAC 59.536 55.000 16.41 13.66 0.00 3.62
933 1254 4.119155 TGAGGGAAGATAAAATGGGGTCT 58.881 43.478 0.00 0.00 0.00 3.85
945 1266 0.663688 CGTCGTCGATGAGGGAAGAT 59.336 55.000 17.58 0.00 39.71 2.40
946 1267 0.675837 ACGTCGTCGATGAGGGAAGA 60.676 55.000 26.15 0.00 40.62 2.87
977 1301 2.479275 GTGAGACTTGGCTACGGAAAAC 59.521 50.000 0.00 0.00 0.00 2.43
984 1308 1.407437 CCCATGGTGAGACTTGGCTAC 60.407 57.143 11.73 0.00 35.09 3.58
987 1311 0.393537 CTCCCATGGTGAGACTTGGC 60.394 60.000 19.95 0.00 35.09 4.52
988 1312 1.209019 CTCTCCCATGGTGAGACTTGG 59.791 57.143 22.10 12.83 43.56 3.61
995 1319 2.038813 TCGGCTCTCCCATGGTGA 59.961 61.111 11.73 7.73 0.00 4.02
1011 1335 1.602851 CATAGCTTGCAGTGATGCCTC 59.397 52.381 0.00 0.00 0.00 4.70
1569 1930 0.686789 CTCCATCCATCCATACGCCA 59.313 55.000 0.00 0.00 0.00 5.69
1572 1933 1.943046 GCTGCTCCATCCATCCATACG 60.943 57.143 0.00 0.00 0.00 3.06
1899 2280 1.153901 GTTAGCTACGCAGGTCGCA 60.154 57.895 0.00 0.00 42.60 5.10
1900 2281 1.140407 CTGTTAGCTACGCAGGTCGC 61.140 60.000 13.84 0.00 43.23 5.19
1901 2282 1.140407 GCTGTTAGCTACGCAGGTCG 61.140 60.000 19.96 3.17 40.42 4.79
1902 2283 2.666989 GCTGTTAGCTACGCAGGTC 58.333 57.895 19.96 6.53 38.45 3.85
1903 2284 4.913126 GCTGTTAGCTACGCAGGT 57.087 55.556 19.96 0.00 38.45 4.00
2084 2465 2.507102 CACCGCTGTAGCTGTCGG 60.507 66.667 13.64 13.64 46.61 4.79
2107 2488 4.530857 CAGGTAAGCGCCTCCGGG 62.531 72.222 2.29 0.00 36.58 5.73
2234 2630 1.276421 GTCAGGTAAAGCAGAGGAGCA 59.724 52.381 0.00 0.00 36.85 4.26
2235 2631 1.406205 GGTCAGGTAAAGCAGAGGAGC 60.406 57.143 0.00 0.00 0.00 4.70
2236 2632 1.134965 CGGTCAGGTAAAGCAGAGGAG 60.135 57.143 0.00 0.00 0.00 3.69
2248 2644 0.316204 CAACGGAACTACGGTCAGGT 59.684 55.000 0.00 0.00 38.39 4.00
2282 2678 0.635731 CTTAAACTGTCGCGAGCTCG 59.364 55.000 31.37 31.37 43.27 5.03
2283 2679 0.367210 GCTTAAACTGTCGCGAGCTC 59.633 55.000 10.24 2.73 0.00 4.09
2284 2680 0.038159 AGCTTAAACTGTCGCGAGCT 60.038 50.000 10.24 9.56 35.78 4.09
2286 2682 1.387084 GTCAGCTTAAACTGTCGCGAG 59.613 52.381 10.24 0.00 38.84 5.03
2287 2683 1.000607 AGTCAGCTTAAACTGTCGCGA 60.001 47.619 3.71 3.71 38.84 5.87
2288 2684 1.387084 GAGTCAGCTTAAACTGTCGCG 59.613 52.381 0.00 0.00 38.84 5.87
2309 2705 1.787847 CCAGGCTGCGTTAAACTCG 59.212 57.895 9.56 0.00 0.00 4.18
2310 2706 1.234615 TGCCAGGCTGCGTTAAACTC 61.235 55.000 14.15 0.00 0.00 3.01
2328 4944 2.005451 CGACCCATCTCTTCTTTGCTG 58.995 52.381 0.00 0.00 0.00 4.41
2342 4958 2.423898 GCCCTTCTCGATCGACCCA 61.424 63.158 15.15 0.00 0.00 4.51
2346 4962 0.460311 GAAAGGCCCTTCTCGATCGA 59.540 55.000 18.32 18.32 0.00 3.59
2394 5010 6.007703 TCCACGAGGGATGAAAATAAGTTTT 58.992 36.000 0.00 0.00 42.15 2.43
2411 5027 2.286294 GCTCTGCAAACATATCCACGAG 59.714 50.000 0.00 0.00 0.00 4.18
2442 5058 7.377766 ACTAATCAACTAGTAAACGGTACGA 57.622 36.000 0.00 0.00 42.04 3.43
2444 5060 9.840427 TGTAACTAATCAACTAGTAAACGGTAC 57.160 33.333 0.00 0.00 31.72 3.34
2449 5065 9.635520 TCTGCTGTAACTAATCAACTAGTAAAC 57.364 33.333 0.00 0.00 31.72 2.01
2454 5070 8.709386 AACATCTGCTGTAACTAATCAACTAG 57.291 34.615 0.00 0.00 36.98 2.57
2503 5121 7.596248 TCATCTACTGTAACTTGTAAAACGGAC 59.404 37.037 0.00 0.00 0.00 4.79
2514 5132 7.093858 GGAGGTTAGTGTCATCTACTGTAACTT 60.094 40.741 0.00 0.00 32.17 2.66
2515 5133 6.377712 GGAGGTTAGTGTCATCTACTGTAACT 59.622 42.308 0.00 0.00 32.17 2.24
2516 5134 6.405619 GGGAGGTTAGTGTCATCTACTGTAAC 60.406 46.154 0.00 0.00 0.00 2.50
2517 5135 5.655532 GGGAGGTTAGTGTCATCTACTGTAA 59.344 44.000 0.00 0.00 0.00 2.41
2518 5136 5.198965 GGGAGGTTAGTGTCATCTACTGTA 58.801 45.833 0.00 0.00 0.00 2.74
2519 5137 4.024670 GGGAGGTTAGTGTCATCTACTGT 58.975 47.826 0.00 0.00 0.00 3.55
2520 5138 3.066900 CGGGAGGTTAGTGTCATCTACTG 59.933 52.174 0.00 0.00 0.00 2.74
2521 5139 3.288964 CGGGAGGTTAGTGTCATCTACT 58.711 50.000 0.00 0.00 0.00 2.57
2522 5140 3.022406 ACGGGAGGTTAGTGTCATCTAC 58.978 50.000 0.00 0.00 0.00 2.59
2523 5141 3.021695 CACGGGAGGTTAGTGTCATCTA 58.978 50.000 0.00 0.00 0.00 1.98
2524 5142 1.825474 CACGGGAGGTTAGTGTCATCT 59.175 52.381 0.00 0.00 0.00 2.90
2525 5143 1.134788 CCACGGGAGGTTAGTGTCATC 60.135 57.143 0.00 0.00 34.34 2.92
2526 5144 0.902531 CCACGGGAGGTTAGTGTCAT 59.097 55.000 0.00 0.00 34.34 3.06
2534 5191 0.831307 GAGCTAATCCACGGGAGGTT 59.169 55.000 0.00 0.00 34.05 3.50
2550 5207 2.505118 GCACGTCCTGTCGAGAGC 60.505 66.667 3.56 0.00 34.70 4.09
2579 5924 4.202050 ACAGGTTTTGAGAAATGAGTGTGC 60.202 41.667 0.00 0.00 0.00 4.57
2591 5936 4.763793 ACAGGATTCATCACAGGTTTTGAG 59.236 41.667 0.00 0.00 0.00 3.02
2602 5948 4.002982 CGTTCTTTCCACAGGATTCATCA 58.997 43.478 0.00 0.00 0.00 3.07
2621 5967 5.812642 GTGATCCTGAACTGAATGTATCGTT 59.187 40.000 0.00 0.00 0.00 3.85
2724 6114 9.950680 ACTGTATTTGTGCAGTTTATATAATGC 57.049 29.630 12.28 12.28 42.61 3.56
2729 6119 8.560355 TGTGACTGTATTTGTGCAGTTTATAT 57.440 30.769 0.91 0.00 44.89 0.86
2730 6120 7.971183 TGTGACTGTATTTGTGCAGTTTATA 57.029 32.000 0.91 0.00 44.89 0.98
2731 6121 6.875948 TGTGACTGTATTTGTGCAGTTTAT 57.124 33.333 0.91 0.00 44.89 1.40
2732 6122 6.685527 TTGTGACTGTATTTGTGCAGTTTA 57.314 33.333 0.91 0.00 44.89 2.01
2733 6123 5.574891 TTGTGACTGTATTTGTGCAGTTT 57.425 34.783 0.91 0.00 44.89 2.66
2734 6124 5.574891 TTTGTGACTGTATTTGTGCAGTT 57.425 34.783 0.91 0.00 44.89 3.16
2736 6126 6.303022 CGTATTTTGTGACTGTATTTGTGCAG 59.697 38.462 0.00 0.00 38.58 4.41
2737 6127 6.139435 CGTATTTTGTGACTGTATTTGTGCA 58.861 36.000 0.00 0.00 0.00 4.57
2738 6128 5.567534 CCGTATTTTGTGACTGTATTTGTGC 59.432 40.000 0.00 0.00 0.00 4.57
2741 6131 6.893759 TGACCGTATTTTGTGACTGTATTTG 58.106 36.000 0.00 0.00 0.00 2.32
2742 6132 7.389330 TGATGACCGTATTTTGTGACTGTATTT 59.611 33.333 0.00 0.00 0.00 1.40
2744 6134 6.403049 TGATGACCGTATTTTGTGACTGTAT 58.597 36.000 0.00 0.00 0.00 2.29
2746 6136 4.637276 TGATGACCGTATTTTGTGACTGT 58.363 39.130 0.00 0.00 0.00 3.55
2747 6137 4.690748 ACTGATGACCGTATTTTGTGACTG 59.309 41.667 0.00 0.00 0.00 3.51
2748 6138 4.894784 ACTGATGACCGTATTTTGTGACT 58.105 39.130 0.00 0.00 0.00 3.41
2749 6139 5.607119 AACTGATGACCGTATTTTGTGAC 57.393 39.130 0.00 0.00 0.00 3.67
2750 6140 4.387559 CGAACTGATGACCGTATTTTGTGA 59.612 41.667 0.00 0.00 0.00 3.58
2751 6141 4.637968 CGAACTGATGACCGTATTTTGTG 58.362 43.478 0.00 0.00 0.00 3.33
2752 6142 3.124636 GCGAACTGATGACCGTATTTTGT 59.875 43.478 0.00 0.00 0.00 2.83
2753 6143 3.370978 AGCGAACTGATGACCGTATTTTG 59.629 43.478 0.00 0.00 0.00 2.44
2754 6144 3.596214 AGCGAACTGATGACCGTATTTT 58.404 40.909 0.00 0.00 0.00 1.82
2802 7541 1.931172 GCATTGATCACAGGCAAATGC 59.069 47.619 9.77 9.77 41.14 3.56
2803 7542 2.546778 GGCATTGATCACAGGCAAATG 58.453 47.619 13.36 6.18 32.45 2.32
2804 7543 1.483415 GGGCATTGATCACAGGCAAAT 59.517 47.619 18.16 0.00 32.45 2.32
2806 7545 0.251698 TGGGCATTGATCACAGGCAA 60.252 50.000 18.16 7.59 32.45 4.52
2807 7546 0.966875 GTGGGCATTGATCACAGGCA 60.967 55.000 18.16 5.68 32.45 4.75
2808 7547 0.966875 TGTGGGCATTGATCACAGGC 60.967 55.000 10.65 10.65 36.61 4.85
2837 8371 1.454479 CAACTGGGCCCCATAGCTG 60.454 63.158 22.27 8.07 30.82 4.24
2839 8373 2.834968 GCAACTGGGCCCCATAGC 60.835 66.667 22.27 15.18 30.82 2.97
2939 8496 2.045045 TGGGGAGATTTGCGGCTG 60.045 61.111 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.