Multiple sequence alignment - TraesCS5D01G282300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G282300 chr5D 100.000 8782 0 0 1 8782 383782623 383773842 0.000000e+00 16218.0
1 TraesCS5D01G282300 chr5D 93.333 135 6 1 5123 5257 421652941 421653072 6.960000e-46 196.0
2 TraesCS5D01G282300 chr5D 86.029 136 18 1 5848 5982 383776646 383776511 2.560000e-30 145.0
3 TraesCS5D01G282300 chr5D 86.029 136 18 1 5978 6113 383776776 383776642 2.560000e-30 145.0
4 TraesCS5D01G282300 chr5D 93.750 48 2 1 5271 5318 421653171 421653217 4.400000e-08 71.3
5 TraesCS5D01G282300 chr5D 87.755 49 6 0 8540 8588 461043387 461043339 3.420000e-04 58.4
6 TraesCS5D01G282300 chr5B 94.559 8289 337 50 1 8249 460272113 460263899 0.000000e+00 12704.0
7 TraesCS5D01G282300 chr5B 85.294 136 19 1 5978 6113 460266295 460266161 1.190000e-28 139.0
8 TraesCS5D01G282300 chr5A 93.391 5114 227 55 4 5063 484085255 484080199 0.000000e+00 7468.0
9 TraesCS5D01G282300 chr5A 95.963 2254 60 14 5418 7649 484080191 484077947 0.000000e+00 3629.0
10 TraesCS5D01G282300 chr5A 91.892 740 48 8 7684 8422 484077873 484077145 0.000000e+00 1024.0
11 TraesCS5D01G282300 chr5A 90.863 197 14 2 5070 5262 255445013 255445209 2.430000e-65 261.0
12 TraesCS5D01G282300 chr5A 95.868 121 5 0 5308 5428 255446611 255446731 6.960000e-46 196.0
13 TraesCS5D01G282300 chr5A 91.429 140 10 1 5119 5258 246760689 246760826 3.240000e-44 191.0
14 TraesCS5D01G282300 chr5A 94.118 119 7 0 5308 5426 554080216 554080334 1.950000e-41 182.0
15 TraesCS5D01G282300 chr5A 93.388 121 8 0 5308 5428 246760737 246760617 7.000000e-41 180.0
16 TraesCS5D01G282300 chr5A 85.507 138 16 3 5978 6113 484079761 484079626 3.310000e-29 141.0
17 TraesCS5D01G282300 chr3D 90.608 181 14 2 5085 5262 4410421 4410601 4.100000e-58 237.0
18 TraesCS5D01G282300 chr3A 89.503 181 16 2 5085 5262 10218933 10219113 8.870000e-55 226.0
19 TraesCS5D01G282300 chr3A 95.041 121 6 0 5308 5428 10220237 10220357 3.240000e-44 191.0
20 TraesCS5D01G282300 chr1D 93.056 144 9 1 5119 5262 268876536 268876678 8.930000e-50 209.0
21 TraesCS5D01G282300 chr1D 94.872 117 5 1 5313 5428 268876580 268876464 1.950000e-41 182.0
22 TraesCS5D01G282300 chr1D 79.592 147 26 4 4615 4759 11547131 11546987 1.560000e-17 102.0
23 TraesCS5D01G282300 chr7D 83.186 226 37 1 6184 6409 224055395 224055619 1.160000e-48 206.0
24 TraesCS5D01G282300 chr7D 94.215 121 7 0 5308 5428 574746909 574747029 1.510000e-42 185.0
25 TraesCS5D01G282300 chr7D 73.563 435 90 20 1904 2321 224051310 224051736 9.190000e-30 143.0
26 TraesCS5D01G282300 chr7D 95.833 48 2 0 5271 5318 574746458 574746505 2.630000e-10 78.7
27 TraesCS5D01G282300 chr7A 83.186 226 37 1 6184 6409 237519518 237519294 1.160000e-48 206.0
28 TraesCS5D01G282300 chr7A 73.333 435 91 19 1904 2321 237523801 237523375 4.280000e-28 137.0
29 TraesCS5D01G282300 chr1B 91.724 145 12 0 5119 5263 200461255 200461399 1.490000e-47 202.0
30 TraesCS5D01G282300 chr1B 93.388 121 8 0 5308 5428 200461303 200461183 7.000000e-41 180.0
31 TraesCS5D01G282300 chr1B 80.851 141 25 2 4620 4759 16921222 16921083 9.320000e-20 110.0
32 TraesCS5D01G282300 chr1B 80.851 141 25 2 4620 4759 17355346 17355207 9.320000e-20 110.0
33 TraesCS5D01G282300 chr2A 92.199 141 9 2 5122 5262 767527893 767527755 1.930000e-46 198.0
34 TraesCS5D01G282300 chr6A 95.041 121 6 0 5308 5428 568036691 568036571 3.240000e-44 191.0
35 TraesCS5D01G282300 chr7B 73.624 436 88 21 1904 2321 173860685 173861111 9.190000e-30 143.0
36 TraesCS5D01G282300 chr1A 78.912 147 27 4 4615 4759 13672901 13672757 7.260000e-16 97.1
37 TraesCS5D01G282300 chr4A 80.000 100 19 1 8663 8762 465331002 465331100 1.220000e-08 73.1
38 TraesCS5D01G282300 chr3B 91.667 48 4 0 8318 8365 811700094 811700141 5.690000e-07 67.6
39 TraesCS5D01G282300 chr6D 94.444 36 2 0 8542 8577 125243760 125243795 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G282300 chr5D 383773842 383782623 8781 True 16218.0 16218 100.00000 1 8782 1 chr5D.!!$R1 8781
1 TraesCS5D01G282300 chr5B 460263899 460272113 8214 True 12704.0 12704 94.55900 1 8249 1 chr5B.!!$R1 8248
2 TraesCS5D01G282300 chr5A 484077145 484085255 8110 True 3065.5 7468 91.68825 4 8422 4 chr5A.!!$R2 8418
3 TraesCS5D01G282300 chr5A 255445013 255446731 1718 False 228.5 261 93.36550 5070 5428 2 chr5A.!!$F3 358
4 TraesCS5D01G282300 chr3A 10218933 10220357 1424 False 208.5 226 92.27200 5085 5428 2 chr3A.!!$F1 343

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
333 337 0.317479 GTACACAACAGAGAGGCGGT 59.683 55.000 0.00 0.00 0.00 5.68 F
1315 1385 0.249676 TTACCGGTCGCCTGCATTTA 59.750 50.000 12.40 0.00 0.00 1.40 F
1599 1675 1.003851 AACGTGTTGAACAGTGGACG 58.996 50.000 0.00 0.54 0.00 4.79 F
3295 3383 0.846693 AGATACCCCTCAATGGCCAC 59.153 55.000 8.16 0.00 0.00 5.01 F
4001 4089 0.034059 CCGCCATCTGTACCTGATCC 59.966 60.000 0.00 0.00 0.00 3.36 F
4375 4463 0.815095 CCCATCAAAAACTACGGGCC 59.185 55.000 0.00 0.00 0.00 5.80 F
5733 7887 0.179059 TGCTTGTTGAGAACTGGCGA 60.179 50.000 0.00 0.00 34.28 5.54 F
7182 9347 1.066430 TCAACGGGCAGTATGAGTTCC 60.066 52.381 0.00 0.00 39.69 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1775 1859 0.033601 TCCAATTAACGGCAGGGCAT 60.034 50.000 0.00 0.0 0.00 4.40 R
3275 3363 0.846015 TGGCCATTGAGGGGTATCTG 59.154 55.000 0.00 0.0 38.09 2.90 R
3527 3615 1.000607 CATTGTTCTGCTGCTGTTGCT 60.001 47.619 0.00 0.0 40.48 3.91 R
5019 5107 0.667993 TTCCCGCAAAAGCAGTCAAG 59.332 50.000 0.00 0.0 0.00 3.02 R
5608 7762 2.412770 GCAGGAACAAAAATTGCATCCG 59.587 45.455 0.00 6.5 41.98 4.18 R
5969 8125 2.530177 ACTCAGCGATGATACAACACG 58.470 47.619 2.72 0.0 0.00 4.49 R
7594 9769 1.300620 CGCACCGTCACCAGAGAAA 60.301 57.895 0.00 0.0 0.00 2.52 R
8704 10922 0.032130 TATCGTCGCCAGAATGAGCC 59.968 55.000 0.00 0.0 39.69 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.599281 TCGGAGCCCACGAGAACA 60.599 61.111 0.00 0.00 35.12 3.18
107 109 2.050442 CGGAGCCCACAAAAACGC 60.050 61.111 0.00 0.00 0.00 4.84
112 114 3.601685 CCCACAAAAACGCGCCCT 61.602 61.111 5.73 0.00 0.00 5.19
118 120 2.551912 AAAAACGCGCCCTCACCTG 61.552 57.895 5.73 0.00 0.00 4.00
162 164 4.492160 ATCGCGTCGCATCCGTGT 62.492 61.111 18.75 0.00 37.14 4.49
187 189 4.680237 CGGAGCCCACGAGCAACA 62.680 66.667 0.00 0.00 34.23 3.33
190 192 4.235762 AGCCCACGAGCAACACGT 62.236 61.111 0.00 0.00 44.83 4.49
191 193 3.276846 GCCCACGAGCAACACGTT 61.277 61.111 0.00 0.00 42.07 3.99
192 194 2.830285 GCCCACGAGCAACACGTTT 61.830 57.895 0.00 0.00 42.07 3.60
200 202 1.008995 GCAACACGTTTGCGGATGT 60.009 52.632 15.97 0.00 43.45 3.06
201 203 0.593773 GCAACACGTTTGCGGATGTT 60.594 50.000 15.97 0.00 43.45 2.71
202 204 1.334239 GCAACACGTTTGCGGATGTTA 60.334 47.619 15.97 0.00 43.45 2.41
204 206 2.157834 ACACGTTTGCGGATGTTAGA 57.842 45.000 0.00 0.00 43.45 2.10
207 209 1.006832 CGTTTGCGGATGTTAGAGGG 58.993 55.000 0.00 0.00 0.00 4.30
209 211 0.393808 TTTGCGGATGTTAGAGGGGC 60.394 55.000 0.00 0.00 0.00 5.80
211 213 2.280186 CGGATGTTAGAGGGGCGC 60.280 66.667 0.00 0.00 0.00 6.53
252 256 0.679505 CGTAGCATAGCTGGCCCTAA 59.320 55.000 0.00 0.00 40.10 2.69
319 323 0.675522 CAATCACCCCCACCGTACAC 60.676 60.000 0.00 0.00 0.00 2.90
328 332 1.336887 CCCACCGTACACAACAGAGAG 60.337 57.143 0.00 0.00 0.00 3.20
333 337 0.317479 GTACACAACAGAGAGGCGGT 59.683 55.000 0.00 0.00 0.00 5.68
585 643 3.075641 GACGGGGGAGGGACTGAC 61.076 72.222 0.00 0.00 41.55 3.51
586 644 3.602030 ACGGGGGAGGGACTGACT 61.602 66.667 0.00 0.00 41.55 3.41
587 645 3.077556 CGGGGGAGGGACTGACTG 61.078 72.222 0.00 0.00 41.55 3.51
588 646 2.689034 GGGGGAGGGACTGACTGG 60.689 72.222 0.00 0.00 41.55 4.00
589 647 2.689034 GGGGAGGGACTGACTGGG 60.689 72.222 0.00 0.00 41.55 4.45
590 648 3.403558 GGGAGGGACTGACTGGGC 61.404 72.222 0.00 0.00 41.55 5.36
591 649 2.284995 GGAGGGACTGACTGGGCT 60.285 66.667 0.00 0.00 41.55 5.19
592 650 2.363172 GGAGGGACTGACTGGGCTC 61.363 68.421 0.00 0.00 41.55 4.70
593 651 2.284995 AGGGACTGACTGGGCTCC 60.285 66.667 0.00 0.00 37.18 4.70
594 652 3.775654 GGGACTGACTGGGCTCCG 61.776 72.222 0.00 0.00 0.00 4.63
595 653 3.775654 GGACTGACTGGGCTCCGG 61.776 72.222 0.00 0.00 35.68 5.14
596 654 4.459089 GACTGACTGGGCTCCGGC 62.459 72.222 0.00 0.00 32.02 6.13
598 656 3.710722 CTGACTGGGCTCCGGCTT 61.711 66.667 0.00 0.00 38.73 4.35
599 657 3.672295 CTGACTGGGCTCCGGCTTC 62.672 68.421 0.00 0.00 38.73 3.86
600 658 4.821589 GACTGGGCTCCGGCTTCG 62.822 72.222 0.00 0.00 38.73 3.79
852 921 4.806342 TTTCCTTCTTTGCGTCTGTAAC 57.194 40.909 0.00 0.00 0.00 2.50
1007 1077 3.968724 GCGCCATTTTCTACGATGATTTC 59.031 43.478 0.00 0.00 0.00 2.17
1008 1078 4.495679 GCGCCATTTTCTACGATGATTTCA 60.496 41.667 0.00 0.00 0.00 2.69
1012 1082 6.017934 GCCATTTTCTACGATGATTTCAGCTA 60.018 38.462 0.00 0.00 0.00 3.32
1026 1096 2.202878 GCTATGCGGCTTCGTCCA 60.203 61.111 0.00 0.00 36.07 4.02
1028 1098 2.202878 TATGCGGCTTCGTCCAGC 60.203 61.111 0.00 0.00 39.28 4.85
1045 1115 0.399233 AGCCCATGTCTCCCTAGGAC 60.399 60.000 11.48 0.45 0.00 3.85
1046 1116 0.399233 GCCCATGTCTCCCTAGGACT 60.399 60.000 11.48 0.00 35.04 3.85
1047 1117 1.133136 GCCCATGTCTCCCTAGGACTA 60.133 57.143 11.48 0.00 35.04 2.59
1048 1118 2.883026 CCCATGTCTCCCTAGGACTAG 58.117 57.143 11.48 4.85 35.04 2.57
1063 1133 1.757699 GACTAGGGATGGCGACTCTTT 59.242 52.381 0.00 0.00 0.00 2.52
1087 1157 4.935205 GCCAAATGTATGTTCTTTTTCCCC 59.065 41.667 0.00 0.00 0.00 4.81
1097 1167 1.679153 TCTTTTTCCCCGTGTGCTTTC 59.321 47.619 0.00 0.00 0.00 2.62
1139 1209 0.666913 CCGGGTACGTCAGATAGGTG 59.333 60.000 0.00 0.00 38.78 4.00
1145 1215 2.041976 CGTCAGATAGGTGGCGGAT 58.958 57.895 0.00 0.00 41.90 4.18
1157 1227 5.881923 AGGTGGCGGATTAGTAGATTTTA 57.118 39.130 0.00 0.00 0.00 1.52
1211 1281 9.353431 TGGTGACTATATGCATAATTGTTTCAT 57.647 29.630 11.13 0.00 0.00 2.57
1259 1329 6.563381 CGTTGGACTACAAACTGTGTGATAAC 60.563 42.308 4.68 0.68 41.89 1.89
1273 1343 3.936453 TGTGATAACGGGCTGTCATTTAC 59.064 43.478 0.00 0.00 0.00 2.01
1277 1347 5.813672 TGATAACGGGCTGTCATTTACTTAC 59.186 40.000 0.00 0.00 0.00 2.34
1279 1349 3.858247 ACGGGCTGTCATTTACTTACTC 58.142 45.455 0.00 0.00 0.00 2.59
1280 1350 3.514309 ACGGGCTGTCATTTACTTACTCT 59.486 43.478 0.00 0.00 0.00 3.24
1315 1385 0.249676 TTACCGGTCGCCTGCATTTA 59.750 50.000 12.40 0.00 0.00 1.40
1350 1422 1.560860 GACTGCTGAACTCACACCGC 61.561 60.000 0.00 0.00 0.00 5.68
1356 1428 2.654912 GAACTCACACCGCCGAACG 61.655 63.158 0.00 0.00 43.15 3.95
1381 1453 1.826054 CGGAGCCGAGTGAGGAGAT 60.826 63.158 2.00 0.00 42.83 2.75
1384 1456 1.398692 GAGCCGAGTGAGGAGATCTT 58.601 55.000 0.00 0.00 0.00 2.40
1485 1557 4.697756 CGATGGCGGTGGTGGTGT 62.698 66.667 0.00 0.00 0.00 4.16
1599 1675 1.003851 AACGTGTTGAACAGTGGACG 58.996 50.000 0.00 0.54 0.00 4.79
1709 1793 6.211584 TGCATTTGCTTACACCCCTAAATAAA 59.788 34.615 3.94 0.00 42.66 1.40
1775 1859 1.885887 CAGAAAAATGGTCGCAGGGAA 59.114 47.619 0.00 0.00 0.00 3.97
1799 1883 2.356330 CCCTGCCGTTAATTGGAGGTAA 60.356 50.000 11.89 0.00 0.00 2.85
1885 1969 1.065636 CAGGAGAAGAGCTGGCATTCA 60.066 52.381 0.00 0.00 0.00 2.57
2259 2343 6.598064 TGACTCATCGTTCTACTCTATCAACA 59.402 38.462 0.00 0.00 0.00 3.33
2458 2542 7.138081 TGCTGCGTTTGTTCCATATATAAATG 58.862 34.615 0.00 0.00 0.00 2.32
2579 2663 7.638444 TCCATCAAGTATTAAATTCCACCTGA 58.362 34.615 0.00 0.00 0.00 3.86
2593 2677 3.254657 TCCACCTGAACAATTTTAAGGCG 59.745 43.478 4.51 0.00 0.00 5.52
2643 2727 3.437213 AGCTTTTGGTGGGGGTAAATAC 58.563 45.455 0.00 0.00 0.00 1.89
2690 2774 4.878397 ACAAGATACTAATTCACCTGCAGC 59.122 41.667 8.66 0.00 0.00 5.25
2691 2775 3.722147 AGATACTAATTCACCTGCAGCG 58.278 45.455 8.66 4.27 0.00 5.18
2955 3040 8.028354 GGAAGTGGAAGTTCTTAGTAGTTACTC 58.972 40.741 2.25 0.00 45.58 2.59
2966 3051 9.512435 TTCTTAGTAGTTACTCGTAAATCATGC 57.488 33.333 0.00 0.00 37.73 4.06
3020 3108 8.225603 TCTAATCAATGAGAAATTTAGTGGGC 57.774 34.615 0.00 0.00 0.00 5.36
3021 3109 4.963276 TCAATGAGAAATTTAGTGGGCG 57.037 40.909 0.00 0.00 0.00 6.13
3022 3110 4.331968 TCAATGAGAAATTTAGTGGGCGT 58.668 39.130 0.00 0.00 0.00 5.68
3023 3111 5.492895 TCAATGAGAAATTTAGTGGGCGTA 58.507 37.500 0.00 0.00 0.00 4.42
3046 3134 1.403323 TGCGCACACTTGTTTGATGAA 59.597 42.857 5.66 0.00 0.00 2.57
3074 3162 8.565896 ACAGTGTATGTATTGTTGATTGACAT 57.434 30.769 0.00 0.00 41.60 3.06
3146 3234 1.813513 AACTTTCATCGGAGCACTGG 58.186 50.000 0.00 0.00 0.00 4.00
3255 3343 5.049886 CCCACATGATATTGTCAAGTCATCG 60.050 44.000 0.00 10.16 40.97 3.84
3289 3377 4.946160 TTTCCAACAGATACCCCTCAAT 57.054 40.909 0.00 0.00 0.00 2.57
3295 3383 0.846693 AGATACCCCTCAATGGCCAC 59.153 55.000 8.16 0.00 0.00 5.01
3300 3388 2.751436 CCTCAATGGCCACGTGGG 60.751 66.667 34.58 18.34 40.85 4.61
3347 3435 3.568853 ACACTTAGTAGCAACAGTCTCGT 59.431 43.478 0.00 0.00 0.00 4.18
3363 3451 3.630312 GTCTCGTAGCTTCATCTCCTTCT 59.370 47.826 0.00 0.00 0.00 2.85
3384 3472 5.784177 TCTACTTCATCCAGTTCTGTGAAC 58.216 41.667 2.54 2.54 0.00 3.18
3396 3484 5.882000 CAGTTCTGTGAACAATATCATGGGA 59.118 40.000 12.16 0.00 0.00 4.37
3397 3485 6.375174 CAGTTCTGTGAACAATATCATGGGAA 59.625 38.462 12.16 0.00 0.00 3.97
3426 3514 2.482142 GCAGGGAAATCCGAGTACTGAG 60.482 54.545 0.00 0.00 41.52 3.35
3492 3580 5.412904 GGACTCCAGTATGAAAAACCTGAAG 59.587 44.000 0.00 0.00 39.69 3.02
3527 3615 2.290641 CCCAGGGTAGTGCACATGTTAA 60.291 50.000 21.04 0.00 0.00 2.01
3562 3650 6.252869 GCAGAACAATGTCTTATTGCAGAATG 59.747 38.462 0.00 0.00 40.87 2.67
3570 3658 3.811497 TCTTATTGCAGAATGGCTCATCG 59.189 43.478 0.00 0.00 35.86 3.84
3573 3661 0.464916 TGCAGAATGGCTCATCGCAT 60.465 50.000 0.00 0.00 41.67 4.73
3574 3662 0.040336 GCAGAATGGCTCATCGCATG 60.040 55.000 0.00 0.00 41.67 4.06
3644 3732 5.235516 TCCGTTTGTGAATAACTTCTCTCC 58.764 41.667 0.00 0.00 32.29 3.71
3685 3773 3.076621 TCTGGTGACATTCAGTTGATGC 58.923 45.455 8.11 0.00 41.51 3.91
3690 3778 1.474077 GACATTCAGTTGATGCCCCAC 59.526 52.381 0.00 0.00 0.00 4.61
3722 3810 4.320641 GCCAACGCCTTTTTATACACAGAA 60.321 41.667 0.00 0.00 0.00 3.02
3878 3966 5.570205 TCTGATACTCCTCTTACTCCGAT 57.430 43.478 0.00 0.00 0.00 4.18
3953 4041 5.954335 AGCTGAATTTTCGAACCCATTTAG 58.046 37.500 0.00 4.55 0.00 1.85
3954 4042 5.476945 AGCTGAATTTTCGAACCCATTTAGT 59.523 36.000 0.00 0.00 0.00 2.24
3958 4046 9.503427 CTGAATTTTCGAACCCATTTAGTATTC 57.497 33.333 0.00 0.00 0.00 1.75
3968 4056 6.426587 ACCCATTTAGTATTCATGAGCAACT 58.573 36.000 10.40 10.40 0.00 3.16
3975 4063 3.737559 ATTCATGAGCAACTTGGGGTA 57.262 42.857 0.00 0.00 0.00 3.69
4001 4089 0.034059 CCGCCATCTGTACCTGATCC 59.966 60.000 0.00 0.00 0.00 3.36
4375 4463 0.815095 CCCATCAAAAACTACGGGCC 59.185 55.000 0.00 0.00 0.00 5.80
4413 4501 4.521062 CAGCGAGCGGGGGAGAAG 62.521 72.222 0.00 0.00 0.00 2.85
4543 4631 8.062065 TGTGGAGTTAATTGTCTCTTTTGTTT 57.938 30.769 10.15 0.00 0.00 2.83
4773 4861 8.021396 CCAAAAGGTATGCTACTCTTTTTGTAC 58.979 37.037 0.00 0.00 37.21 2.90
4775 4863 8.685838 AAAGGTATGCTACTCTTTTTGTACAA 57.314 30.769 3.59 3.59 30.37 2.41
5019 5107 4.501071 TGCCGAGTATTTCAGAAGGTAAC 58.499 43.478 0.00 0.00 0.00 2.50
5078 5166 9.160496 CAGCATAATGATTTAGATTCTAGGGTC 57.840 37.037 0.00 0.00 0.00 4.46
5608 7762 5.493133 TTTCGTATTGTGCATGGTAATCC 57.507 39.130 0.00 0.00 0.00 3.01
5733 7887 0.179059 TGCTTGTTGAGAACTGGCGA 60.179 50.000 0.00 0.00 34.28 5.54
5969 8125 3.249917 CAATGCCGGGTTGTATGTTTTC 58.750 45.455 2.18 0.00 0.00 2.29
6110 8266 6.378582 GGGTTGTATGTTCTTGTGTTGTATG 58.621 40.000 0.00 0.00 0.00 2.39
6524 8681 4.676196 GCAGCAATGGTTCAGATGGTTTAG 60.676 45.833 0.00 0.00 0.00 1.85
6753 8910 7.589587 TGTGTTAATCTACGCAAAGATTTGTTG 59.410 33.333 13.92 3.34 42.28 3.33
6904 9069 3.010138 TCAGTAAATTGGCTAGGCAGGTT 59.990 43.478 19.32 18.00 0.00 3.50
7095 9260 9.461312 TGGTTAAATAGCTGATGATGTAGTTTT 57.539 29.630 0.00 0.00 0.00 2.43
7167 9332 5.629020 CACCTTCCATGTAAAAACATCAACG 59.371 40.000 0.00 0.00 0.00 4.10
7182 9347 1.066430 TCAACGGGCAGTATGAGTTCC 60.066 52.381 0.00 0.00 39.69 3.62
7190 9355 4.384647 GGGCAGTATGAGTTCCAGAATCTT 60.385 45.833 0.00 0.00 39.69 2.40
7204 9369 9.994432 GTTCCAGAATCTTGACATAAAACATAG 57.006 33.333 0.00 0.00 0.00 2.23
7576 9751 5.857471 AGTACACCTACGGCAAACATATA 57.143 39.130 0.00 0.00 0.00 0.86
7594 9769 1.748329 TAGCCAGCCGAATCGAGCAT 61.748 55.000 15.94 4.48 0.00 3.79
7737 9954 1.373590 AACTTGTTTGCTGCGTCCGT 61.374 50.000 0.00 0.00 0.00 4.69
7753 9970 1.202758 TCCGTCATTTTCAGGTGCTGT 60.203 47.619 0.00 0.00 32.61 4.40
7795 10012 0.896226 GCCTGAACCGAAGACTACCT 59.104 55.000 0.00 0.00 0.00 3.08
7806 10023 3.639094 CGAAGACTACCTGGATCCTTCAT 59.361 47.826 14.23 0.00 32.60 2.57
7853 10070 1.625818 GACCCTGTCAGTGGAGAATGT 59.374 52.381 12.72 0.00 32.09 2.71
7983 10200 5.509670 GGATGATTGAGTGATGGTGATCGTA 60.510 44.000 0.00 0.00 0.00 3.43
8008 10225 3.559242 GTGTGGCTGCTCATAGAGATTTC 59.441 47.826 0.00 0.00 0.00 2.17
8119 10336 6.934083 TGTTTTTCTTCTTTCCAGTTTTTGCT 59.066 30.769 0.00 0.00 0.00 3.91
8123 10340 3.715628 TCTTTCCAGTTTTTGCTCTGC 57.284 42.857 0.00 0.00 0.00 4.26
8136 10354 3.535629 CTCTGCCGGTTGCTGTGGA 62.536 63.158 1.90 0.00 42.00 4.02
8153 10371 3.055458 TGTGGATTTACCTTCGCTGATCA 60.055 43.478 0.00 0.00 39.86 2.92
8171 10389 1.206849 TCATATTCTCCTGTGTGCGCA 59.793 47.619 5.66 5.66 0.00 6.09
8296 10514 2.508716 GTTTTCCTCCCCTAACCCTAGG 59.491 54.545 0.06 0.06 44.10 3.02
8297 10515 1.411741 TTCCTCCCCTAACCCTAGGT 58.588 55.000 8.29 0.00 43.08 3.08
8299 10517 0.400093 CCTCCCCTAACCCTAGGTGG 60.400 65.000 8.29 4.32 43.08 4.61
8301 10519 0.340908 TCCCCTAACCCTAGGTGGTC 59.659 60.000 8.29 0.00 43.08 4.02
8324 10542 2.553247 GGGCAAACTCTAGGCTTCACTT 60.553 50.000 0.00 0.00 0.00 3.16
8325 10543 2.485814 GGCAAACTCTAGGCTTCACTTG 59.514 50.000 0.00 0.00 0.00 3.16
8333 10551 2.256461 GCTTCACTTGCAAGCCCG 59.744 61.111 26.27 14.81 40.45 6.13
8335 10553 2.032981 CTTCACTTGCAAGCCCGTT 58.967 52.632 26.27 3.26 0.00 4.44
8341 10559 0.454957 CTTGCAAGCCCGTTGATTCG 60.455 55.000 14.65 0.00 38.60 3.34
8362 10580 3.541713 CCCCTCTGCCTACCGCTC 61.542 72.222 0.00 0.00 38.78 5.03
8365 10583 3.141488 CTCTGCCTACCGCTCCGT 61.141 66.667 0.00 0.00 38.78 4.69
8368 10586 2.992689 TGCCTACCGCTCCGTTGA 60.993 61.111 0.00 0.00 38.78 3.18
8379 10597 2.099652 CTCCGTTGACTGGTGGCAGA 62.100 60.000 0.00 0.00 0.00 4.26
8383 10601 0.681733 GTTGACTGGTGGCAGAGAGA 59.318 55.000 0.00 0.00 0.00 3.10
8384 10602 0.972134 TTGACTGGTGGCAGAGAGAG 59.028 55.000 0.00 0.00 0.00 3.20
8392 10610 2.206536 GGCAGAGAGAGGGATCCCG 61.207 68.421 25.48 10.15 41.95 5.14
8406 10624 0.692419 ATCCCGATGCCTTCACTCCT 60.692 55.000 0.00 0.00 0.00 3.69
8410 10628 0.742281 CGATGCCTTCACTCCTGTGG 60.742 60.000 0.00 0.00 43.94 4.17
8413 10631 1.673665 GCCTTCACTCCTGTGGCTG 60.674 63.158 0.00 0.00 43.94 4.85
8414 10632 1.002868 CCTTCACTCCTGTGGCTGG 60.003 63.158 0.00 0.00 43.94 4.85
8415 10633 1.757306 CTTCACTCCTGTGGCTGGT 59.243 57.895 0.00 0.00 43.94 4.00
8416 10634 0.604780 CTTCACTCCTGTGGCTGGTG 60.605 60.000 0.00 0.00 43.94 4.17
8418 10636 3.958860 ACTCCTGTGGCTGGTGGC 61.959 66.667 0.00 0.00 40.90 5.01
8436 10654 3.339093 GGGGAGGGGGTCTTGGTG 61.339 72.222 0.00 0.00 0.00 4.17
8437 10655 4.048470 GGGAGGGGGTCTTGGTGC 62.048 72.222 0.00 0.00 0.00 5.01
8438 10656 4.048470 GGAGGGGGTCTTGGTGCC 62.048 72.222 0.00 0.00 0.00 5.01
8439 10657 2.936032 GAGGGGGTCTTGGTGCCT 60.936 66.667 0.00 0.00 0.00 4.75
8440 10658 2.452491 AGGGGGTCTTGGTGCCTT 60.452 61.111 0.00 0.00 0.00 4.35
8441 10659 2.035783 GGGGGTCTTGGTGCCTTC 59.964 66.667 0.00 0.00 0.00 3.46
8442 10660 2.359975 GGGGTCTTGGTGCCTTCG 60.360 66.667 0.00 0.00 0.00 3.79
8443 10661 3.056328 GGGTCTTGGTGCCTTCGC 61.056 66.667 0.00 0.00 0.00 4.70
8444 10662 2.032681 GGTCTTGGTGCCTTCGCT 59.967 61.111 0.00 0.00 35.36 4.93
8445 10663 2.035442 GGTCTTGGTGCCTTCGCTC 61.035 63.158 0.00 0.00 35.36 5.03
8446 10664 2.048222 TCTTGGTGCCTTCGCTCG 60.048 61.111 0.00 0.00 35.36 5.03
8447 10665 3.121030 CTTGGTGCCTTCGCTCGG 61.121 66.667 0.00 0.00 35.36 4.63
8475 10693 3.952811 GGCGACGCTTCTTTGAGT 58.047 55.556 20.77 0.00 0.00 3.41
8476 10694 2.235546 GGCGACGCTTCTTTGAGTT 58.764 52.632 20.77 0.00 0.00 3.01
8477 10695 0.586802 GGCGACGCTTCTTTGAGTTT 59.413 50.000 20.77 0.00 0.00 2.66
8478 10696 1.660333 GGCGACGCTTCTTTGAGTTTG 60.660 52.381 20.77 0.00 0.00 2.93
8479 10697 1.003866 GCGACGCTTCTTTGAGTTTGT 60.004 47.619 13.73 0.00 0.00 2.83
8480 10698 2.892613 CGACGCTTCTTTGAGTTTGTC 58.107 47.619 0.00 0.00 0.00 3.18
8481 10699 2.540101 CGACGCTTCTTTGAGTTTGTCT 59.460 45.455 0.00 0.00 0.00 3.41
8482 10700 3.001330 CGACGCTTCTTTGAGTTTGTCTT 59.999 43.478 0.00 0.00 0.00 3.01
8483 10701 4.519147 GACGCTTCTTTGAGTTTGTCTTC 58.481 43.478 0.00 0.00 0.00 2.87
8484 10702 4.192317 ACGCTTCTTTGAGTTTGTCTTCT 58.808 39.130 0.00 0.00 0.00 2.85
8485 10703 4.034510 ACGCTTCTTTGAGTTTGTCTTCTG 59.965 41.667 0.00 0.00 0.00 3.02
8486 10704 4.286101 GCTTCTTTGAGTTTGTCTTCTGC 58.714 43.478 0.00 0.00 0.00 4.26
8487 10705 4.521943 CTTCTTTGAGTTTGTCTTCTGCG 58.478 43.478 0.00 0.00 0.00 5.18
8488 10706 2.287915 TCTTTGAGTTTGTCTTCTGCGC 59.712 45.455 0.00 0.00 0.00 6.09
8489 10707 1.953559 TTGAGTTTGTCTTCTGCGCT 58.046 45.000 9.73 0.00 0.00 5.92
8490 10708 1.502231 TGAGTTTGTCTTCTGCGCTC 58.498 50.000 9.73 0.00 0.00 5.03
8491 10709 1.069204 TGAGTTTGTCTTCTGCGCTCT 59.931 47.619 9.73 0.00 0.00 4.09
8492 10710 1.458827 GAGTTTGTCTTCTGCGCTCTG 59.541 52.381 9.73 0.00 0.00 3.35
8493 10711 1.069204 AGTTTGTCTTCTGCGCTCTGA 59.931 47.619 9.73 1.04 0.00 3.27
8494 10712 2.072298 GTTTGTCTTCTGCGCTCTGAT 58.928 47.619 9.73 0.00 0.00 2.90
8495 10713 2.001812 TTGTCTTCTGCGCTCTGATC 57.998 50.000 9.73 0.00 0.00 2.92
8496 10714 0.174389 TGTCTTCTGCGCTCTGATCC 59.826 55.000 9.73 0.00 0.00 3.36
8497 10715 0.459489 GTCTTCTGCGCTCTGATCCT 59.541 55.000 9.73 0.00 0.00 3.24
8498 10716 0.743688 TCTTCTGCGCTCTGATCCTC 59.256 55.000 9.73 0.00 0.00 3.71
8499 10717 0.249405 CTTCTGCGCTCTGATCCTCC 60.249 60.000 9.73 0.00 0.00 4.30
8500 10718 0.685785 TTCTGCGCTCTGATCCTCCT 60.686 55.000 9.73 0.00 0.00 3.69
8501 10719 0.685785 TCTGCGCTCTGATCCTCCTT 60.686 55.000 9.73 0.00 0.00 3.36
8502 10720 0.530211 CTGCGCTCTGATCCTCCTTG 60.530 60.000 9.73 0.00 0.00 3.61
8503 10721 0.972471 TGCGCTCTGATCCTCCTTGA 60.972 55.000 9.73 0.00 0.00 3.02
8504 10722 0.249405 GCGCTCTGATCCTCCTTGAG 60.249 60.000 0.00 0.00 0.00 3.02
8505 10723 1.110442 CGCTCTGATCCTCCTTGAGT 58.890 55.000 0.00 0.00 0.00 3.41
8506 10724 1.480137 CGCTCTGATCCTCCTTGAGTT 59.520 52.381 0.00 0.00 0.00 3.01
8507 10725 2.481104 CGCTCTGATCCTCCTTGAGTTC 60.481 54.545 0.00 0.00 0.00 3.01
8508 10726 2.499289 GCTCTGATCCTCCTTGAGTTCA 59.501 50.000 0.00 0.00 0.00 3.18
8509 10727 3.134442 GCTCTGATCCTCCTTGAGTTCAT 59.866 47.826 0.00 0.00 0.00 2.57
8510 10728 4.740334 GCTCTGATCCTCCTTGAGTTCATC 60.740 50.000 0.00 0.00 0.00 2.92
8511 10729 4.618635 TCTGATCCTCCTTGAGTTCATCT 58.381 43.478 0.00 0.00 0.00 2.90
8512 10730 4.405036 TCTGATCCTCCTTGAGTTCATCTG 59.595 45.833 0.00 0.00 0.00 2.90
8513 10731 3.453717 TGATCCTCCTTGAGTTCATCTGG 59.546 47.826 0.00 0.00 0.00 3.86
8514 10732 3.190383 TCCTCCTTGAGTTCATCTGGA 57.810 47.619 0.00 0.00 32.79 3.86
8515 10733 2.834549 TCCTCCTTGAGTTCATCTGGAC 59.165 50.000 0.00 0.00 31.28 4.02
8516 10734 2.417924 CCTCCTTGAGTTCATCTGGACG 60.418 54.545 0.00 0.00 31.28 4.79
8517 10735 2.232452 CTCCTTGAGTTCATCTGGACGT 59.768 50.000 0.00 0.00 31.28 4.34
8518 10736 3.427573 TCCTTGAGTTCATCTGGACGTA 58.572 45.455 0.00 0.00 0.00 3.57
8519 10737 3.830178 TCCTTGAGTTCATCTGGACGTAA 59.170 43.478 0.00 0.00 0.00 3.18
8520 10738 4.466370 TCCTTGAGTTCATCTGGACGTAAT 59.534 41.667 0.00 0.00 0.00 1.89
8521 10739 4.806247 CCTTGAGTTCATCTGGACGTAATC 59.194 45.833 0.00 0.00 0.00 1.75
8522 10740 5.400066 TTGAGTTCATCTGGACGTAATCA 57.600 39.130 0.00 0.00 0.00 2.57
8523 10741 5.400066 TGAGTTCATCTGGACGTAATCAA 57.600 39.130 0.00 0.00 0.00 2.57
8524 10742 5.977635 TGAGTTCATCTGGACGTAATCAAT 58.022 37.500 0.00 0.00 0.00 2.57
8525 10743 5.812127 TGAGTTCATCTGGACGTAATCAATG 59.188 40.000 0.00 0.00 0.00 2.82
8526 10744 5.734720 AGTTCATCTGGACGTAATCAATGT 58.265 37.500 0.00 0.00 0.00 2.71
8527 10745 6.873997 AGTTCATCTGGACGTAATCAATGTA 58.126 36.000 0.00 0.00 0.00 2.29
8528 10746 7.500992 AGTTCATCTGGACGTAATCAATGTAT 58.499 34.615 0.00 0.00 0.00 2.29
8529 10747 8.638873 AGTTCATCTGGACGTAATCAATGTATA 58.361 33.333 0.00 0.00 0.00 1.47
8530 10748 8.916654 GTTCATCTGGACGTAATCAATGTATAG 58.083 37.037 0.00 0.00 0.00 1.31
8531 10749 8.404107 TCATCTGGACGTAATCAATGTATAGA 57.596 34.615 0.00 0.00 0.00 1.98
8532 10750 9.025041 TCATCTGGACGTAATCAATGTATAGAT 57.975 33.333 0.00 0.00 33.43 1.98
8533 10751 9.645059 CATCTGGACGTAATCAATGTATAGATT 57.355 33.333 0.00 0.00 38.05 2.40
8537 10755 9.607988 TGGACGTAATCAATGTATAGATTTTGT 57.392 29.630 0.00 0.00 36.07 2.83
8549 10767 8.335532 TGTATAGATTTTGTTGTCTTCTTGGG 57.664 34.615 0.00 0.00 0.00 4.12
8550 10768 6.840780 ATAGATTTTGTTGTCTTCTTGGGG 57.159 37.500 0.00 0.00 0.00 4.96
8551 10769 3.321968 AGATTTTGTTGTCTTCTTGGGGC 59.678 43.478 0.00 0.00 0.00 5.80
8552 10770 1.028905 TTTGTTGTCTTCTTGGGGCG 58.971 50.000 0.00 0.00 0.00 6.13
8553 10771 0.821711 TTGTTGTCTTCTTGGGGCGG 60.822 55.000 0.00 0.00 0.00 6.13
8554 10772 1.228154 GTTGTCTTCTTGGGGCGGT 60.228 57.895 0.00 0.00 0.00 5.68
8555 10773 1.228124 TTGTCTTCTTGGGGCGGTG 60.228 57.895 0.00 0.00 0.00 4.94
8556 10774 1.701031 TTGTCTTCTTGGGGCGGTGA 61.701 55.000 0.00 0.00 0.00 4.02
8557 10775 1.376037 GTCTTCTTGGGGCGGTGAG 60.376 63.158 0.00 0.00 0.00 3.51
8558 10776 1.535444 TCTTCTTGGGGCGGTGAGA 60.535 57.895 0.00 0.00 0.00 3.27
8559 10777 0.909610 TCTTCTTGGGGCGGTGAGAT 60.910 55.000 0.00 0.00 0.00 2.75
8560 10778 0.035056 CTTCTTGGGGCGGTGAGATT 60.035 55.000 0.00 0.00 0.00 2.40
8561 10779 1.209504 CTTCTTGGGGCGGTGAGATTA 59.790 52.381 0.00 0.00 0.00 1.75
8562 10780 0.830648 TCTTGGGGCGGTGAGATTAG 59.169 55.000 0.00 0.00 0.00 1.73
8563 10781 0.179045 CTTGGGGCGGTGAGATTAGG 60.179 60.000 0.00 0.00 0.00 2.69
8564 10782 1.632018 TTGGGGCGGTGAGATTAGGG 61.632 60.000 0.00 0.00 0.00 3.53
8565 10783 2.070650 GGGGCGGTGAGATTAGGGT 61.071 63.158 0.00 0.00 0.00 4.34
8566 10784 1.632965 GGGGCGGTGAGATTAGGGTT 61.633 60.000 0.00 0.00 0.00 4.11
8567 10785 0.255033 GGGCGGTGAGATTAGGGTTT 59.745 55.000 0.00 0.00 0.00 3.27
8568 10786 1.664873 GGCGGTGAGATTAGGGTTTC 58.335 55.000 0.00 0.00 0.00 2.78
8569 10787 1.209747 GGCGGTGAGATTAGGGTTTCT 59.790 52.381 0.00 0.00 0.00 2.52
8570 10788 2.552031 GCGGTGAGATTAGGGTTTCTC 58.448 52.381 0.00 0.00 39.07 2.87
8571 10789 2.810650 CGGTGAGATTAGGGTTTCTCG 58.189 52.381 0.00 0.00 41.04 4.04
8572 10790 2.165845 CGGTGAGATTAGGGTTTCTCGT 59.834 50.000 0.00 0.00 41.04 4.18
8573 10791 3.734293 CGGTGAGATTAGGGTTTCTCGTC 60.734 52.174 0.00 0.00 41.04 4.20
8574 10792 3.194968 GGTGAGATTAGGGTTTCTCGTCA 59.805 47.826 0.00 0.00 41.04 4.35
8575 10793 4.141914 GGTGAGATTAGGGTTTCTCGTCAT 60.142 45.833 0.00 0.00 41.04 3.06
8576 10794 4.806247 GTGAGATTAGGGTTTCTCGTCATG 59.194 45.833 0.00 0.00 41.04 3.07
8577 10795 3.798202 AGATTAGGGTTTCTCGTCATGC 58.202 45.455 0.00 0.00 0.00 4.06
8578 10796 2.004583 TTAGGGTTTCTCGTCATGCG 57.995 50.000 3.55 3.55 43.01 4.73
8579 10797 0.174845 TAGGGTTTCTCGTCATGCGG 59.825 55.000 9.16 2.07 41.72 5.69
8580 10798 2.750888 GGGTTTCTCGTCATGCGGC 61.751 63.158 9.16 0.00 41.72 6.53
8581 10799 2.395690 GTTTCTCGTCATGCGGCG 59.604 61.111 0.51 0.51 41.72 6.46
8582 10800 2.092291 GTTTCTCGTCATGCGGCGA 61.092 57.895 12.98 7.86 41.72 5.54
8586 10804 2.494445 TCGTCATGCGGCGAGATT 59.506 55.556 12.98 0.00 41.72 2.40
8587 10805 1.153647 TCGTCATGCGGCGAGATTT 60.154 52.632 12.98 0.00 41.72 2.17
8588 10806 1.145759 TCGTCATGCGGCGAGATTTC 61.146 55.000 12.98 0.00 41.72 2.17
8589 10807 1.420641 CGTCATGCGGCGAGATTTCA 61.421 55.000 12.98 0.00 36.85 2.69
8590 10808 0.302890 GTCATGCGGCGAGATTTCAG 59.697 55.000 12.98 0.00 0.00 3.02
8591 10809 0.175531 TCATGCGGCGAGATTTCAGA 59.824 50.000 12.98 0.00 0.00 3.27
8592 10810 1.202568 TCATGCGGCGAGATTTCAGAT 60.203 47.619 12.98 0.00 0.00 2.90
8593 10811 1.194098 CATGCGGCGAGATTTCAGATC 59.806 52.381 12.98 0.00 0.00 2.75
8594 10812 0.461548 TGCGGCGAGATTTCAGATCT 59.538 50.000 12.98 0.00 0.00 2.75
8595 10813 1.681264 TGCGGCGAGATTTCAGATCTA 59.319 47.619 12.98 0.00 0.00 1.98
8596 10814 2.297315 TGCGGCGAGATTTCAGATCTAT 59.703 45.455 12.98 0.00 0.00 1.98
8597 10815 3.506067 TGCGGCGAGATTTCAGATCTATA 59.494 43.478 12.98 0.00 0.00 1.31
8598 10816 4.101942 GCGGCGAGATTTCAGATCTATAG 58.898 47.826 12.98 0.00 0.00 1.31
8599 10817 4.142578 GCGGCGAGATTTCAGATCTATAGA 60.143 45.833 12.98 4.57 0.00 1.98
8600 10818 5.620205 GCGGCGAGATTTCAGATCTATAGAA 60.620 44.000 12.98 0.00 0.00 2.10
8601 10819 6.027131 CGGCGAGATTTCAGATCTATAGAAG 58.973 44.000 6.52 0.34 0.00 2.85
8602 10820 6.329496 GGCGAGATTTCAGATCTATAGAAGG 58.671 44.000 6.52 0.00 0.00 3.46
8603 10821 6.071616 GGCGAGATTTCAGATCTATAGAAGGT 60.072 42.308 6.52 0.00 0.00 3.50
8604 10822 7.375053 GCGAGATTTCAGATCTATAGAAGGTT 58.625 38.462 6.52 0.00 0.00 3.50
8605 10823 7.870445 GCGAGATTTCAGATCTATAGAAGGTTT 59.130 37.037 6.52 0.00 0.00 3.27
8606 10824 9.405587 CGAGATTTCAGATCTATAGAAGGTTTC 57.594 37.037 6.52 0.00 0.00 2.78
8610 10828 8.703604 TTTCAGATCTATAGAAGGTTTCAACG 57.296 34.615 6.52 0.00 0.00 4.10
8611 10829 6.273825 TCAGATCTATAGAAGGTTTCAACGC 58.726 40.000 6.52 0.00 0.00 4.84
8612 10830 5.463724 CAGATCTATAGAAGGTTTCAACGCC 59.536 44.000 6.52 0.00 0.00 5.68
8613 10831 3.777478 TCTATAGAAGGTTTCAACGCCG 58.223 45.455 0.00 0.00 0.00 6.46
8614 10832 2.754946 ATAGAAGGTTTCAACGCCGA 57.245 45.000 0.00 0.00 0.00 5.54
8615 10833 1.787012 TAGAAGGTTTCAACGCCGAC 58.213 50.000 0.00 0.00 0.00 4.79
8617 10835 1.216941 GAAGGTTTCAACGCCGACGA 61.217 55.000 0.00 0.00 43.93 4.20
8618 10836 1.493134 AAGGTTTCAACGCCGACGAC 61.493 55.000 0.00 0.00 43.93 4.34
8619 10837 1.952635 GGTTTCAACGCCGACGACT 60.953 57.895 0.00 0.00 43.93 4.18
8620 10838 0.664166 GGTTTCAACGCCGACGACTA 60.664 55.000 0.00 0.00 43.93 2.59
8621 10839 0.432361 GTTTCAACGCCGACGACTAC 59.568 55.000 0.00 0.00 43.93 2.73
8622 10840 0.998226 TTTCAACGCCGACGACTACG 60.998 55.000 0.00 0.00 43.93 3.51
8628 10846 3.763319 CCGACGACTACGGCTTTG 58.237 61.111 0.00 0.00 46.46 2.77
8629 10847 1.804326 CCGACGACTACGGCTTTGG 60.804 63.158 0.00 0.00 46.46 3.28
8630 10848 1.804326 CGACGACTACGGCTTTGGG 60.804 63.158 0.00 0.00 46.46 4.12
8631 10849 1.447314 GACGACTACGGCTTTGGGG 60.447 63.158 0.00 0.00 45.04 4.96
8632 10850 2.818274 CGACTACGGCTTTGGGGC 60.818 66.667 0.00 0.00 35.72 5.80
8639 10857 2.824489 GGCTTTGGGGCGCTAGTC 60.824 66.667 7.64 0.00 0.00 2.59
8640 10858 2.824489 GCTTTGGGGCGCTAGTCC 60.824 66.667 7.64 0.00 42.75 3.85
8641 10859 2.990479 CTTTGGGGCGCTAGTCCT 59.010 61.111 7.64 0.00 43.12 3.85
8642 10860 1.299976 CTTTGGGGCGCTAGTCCTT 59.700 57.895 7.64 0.00 43.12 3.36
8643 10861 0.539986 CTTTGGGGCGCTAGTCCTTA 59.460 55.000 7.64 0.00 43.12 2.69
8644 10862 0.539986 TTTGGGGCGCTAGTCCTTAG 59.460 55.000 7.64 0.00 43.12 2.18
8645 10863 1.335132 TTGGGGCGCTAGTCCTTAGG 61.335 60.000 7.64 0.00 43.12 2.69
8646 10864 2.422165 GGGCGCTAGTCCTTAGGC 59.578 66.667 7.64 0.00 39.58 3.93
8647 10865 2.134933 GGGCGCTAGTCCTTAGGCT 61.135 63.158 7.64 0.00 39.58 4.58
8648 10866 1.068250 GGCGCTAGTCCTTAGGCTG 59.932 63.158 7.64 0.00 0.00 4.85
8649 10867 1.677637 GGCGCTAGTCCTTAGGCTGT 61.678 60.000 7.64 0.00 0.00 4.40
8650 10868 0.249114 GCGCTAGTCCTTAGGCTGTC 60.249 60.000 0.00 0.00 0.00 3.51
8651 10869 1.103803 CGCTAGTCCTTAGGCTGTCA 58.896 55.000 0.00 0.00 0.00 3.58
8652 10870 1.683917 CGCTAGTCCTTAGGCTGTCAT 59.316 52.381 0.00 0.00 0.00 3.06
8653 10871 2.101582 CGCTAGTCCTTAGGCTGTCATT 59.898 50.000 0.00 0.00 0.00 2.57
8654 10872 3.462021 GCTAGTCCTTAGGCTGTCATTG 58.538 50.000 0.00 0.00 0.00 2.82
8655 10873 3.133003 GCTAGTCCTTAGGCTGTCATTGA 59.867 47.826 0.00 0.00 0.00 2.57
8656 10874 3.618690 AGTCCTTAGGCTGTCATTGAC 57.381 47.619 9.93 9.93 0.00 3.18
8657 10875 2.906389 AGTCCTTAGGCTGTCATTGACA 59.094 45.455 18.08 18.08 40.50 3.58
8658 10876 3.327757 AGTCCTTAGGCTGTCATTGACAA 59.672 43.478 19.44 3.04 42.26 3.18
8659 10877 3.686726 GTCCTTAGGCTGTCATTGACAAG 59.313 47.826 19.44 13.23 42.26 3.16
8660 10878 2.421424 CCTTAGGCTGTCATTGACAAGC 59.579 50.000 19.44 21.19 42.26 4.01
8661 10879 3.341823 CTTAGGCTGTCATTGACAAGCT 58.658 45.455 26.02 18.99 42.26 3.74
8662 10880 4.507710 CTTAGGCTGTCATTGACAAGCTA 58.492 43.478 26.02 18.37 42.26 3.32
8663 10881 3.423539 AGGCTGTCATTGACAAGCTAA 57.576 42.857 26.02 6.63 42.26 3.09
8664 10882 3.341823 AGGCTGTCATTGACAAGCTAAG 58.658 45.455 26.02 14.97 42.26 2.18
8665 10883 2.159462 GGCTGTCATTGACAAGCTAAGC 60.159 50.000 26.02 21.01 42.26 3.09
8666 10884 2.746362 GCTGTCATTGACAAGCTAAGCT 59.254 45.455 19.44 0.00 42.26 3.74
8667 10885 3.425892 GCTGTCATTGACAAGCTAAGCTG 60.426 47.826 19.44 6.72 42.26 4.24
8668 10886 3.076621 TGTCATTGACAAGCTAAGCTGG 58.923 45.455 16.95 0.00 39.78 4.85
8669 10887 2.086869 TCATTGACAAGCTAAGCTGGC 58.913 47.619 4.02 4.02 39.62 4.85
8670 10888 1.133790 CATTGACAAGCTAAGCTGGCC 59.866 52.381 0.00 0.00 39.62 5.36
8671 10889 0.609131 TTGACAAGCTAAGCTGGCCC 60.609 55.000 0.00 0.00 39.62 5.80
8672 10890 1.750780 GACAAGCTAAGCTGGCCCC 60.751 63.158 0.00 0.00 39.62 5.80
8673 10891 2.356278 CAAGCTAAGCTGGCCCCA 59.644 61.111 0.00 0.00 39.62 4.96
8674 10892 1.751927 CAAGCTAAGCTGGCCCCAG 60.752 63.158 9.98 9.98 46.15 4.45
8675 10893 2.234296 AAGCTAAGCTGGCCCCAGT 61.234 57.895 15.28 0.00 45.24 4.00
8676 10894 0.914417 AAGCTAAGCTGGCCCCAGTA 60.914 55.000 15.28 1.02 45.24 2.74
8677 10895 0.695803 AGCTAAGCTGGCCCCAGTAT 60.696 55.000 15.28 7.53 45.24 2.12
8678 10896 0.536006 GCTAAGCTGGCCCCAGTATG 60.536 60.000 15.28 5.56 45.24 2.39
8679 10897 1.131638 CTAAGCTGGCCCCAGTATGA 58.868 55.000 15.28 0.00 45.24 2.15
8680 10898 1.071385 CTAAGCTGGCCCCAGTATGAG 59.929 57.143 15.28 4.36 45.24 2.90
8681 10899 0.621571 AAGCTGGCCCCAGTATGAGA 60.622 55.000 15.28 0.00 45.24 3.27
8682 10900 1.053264 AGCTGGCCCCAGTATGAGAG 61.053 60.000 15.28 0.00 45.24 3.20
8683 10901 1.449353 CTGGCCCCAGTATGAGAGC 59.551 63.158 0.00 0.00 39.69 4.09
8684 10902 2.374830 CTGGCCCCAGTATGAGAGCG 62.375 65.000 0.00 0.00 39.69 5.03
8685 10903 2.134287 GGCCCCAGTATGAGAGCGA 61.134 63.158 0.00 0.00 39.69 4.93
8686 10904 1.068250 GCCCCAGTATGAGAGCGAC 59.932 63.158 0.00 0.00 39.69 5.19
8687 10905 1.676678 GCCCCAGTATGAGAGCGACA 61.677 60.000 0.00 0.00 39.69 4.35
8688 10906 0.824109 CCCCAGTATGAGAGCGACAA 59.176 55.000 0.00 0.00 39.69 3.18
8689 10907 1.471676 CCCCAGTATGAGAGCGACAAC 60.472 57.143 0.00 0.00 39.69 3.32
8690 10908 1.204704 CCCAGTATGAGAGCGACAACA 59.795 52.381 0.00 0.00 39.69 3.33
8691 10909 2.353704 CCCAGTATGAGAGCGACAACAA 60.354 50.000 0.00 0.00 39.69 2.83
8692 10910 2.668457 CCAGTATGAGAGCGACAACAAC 59.332 50.000 0.00 0.00 39.69 3.32
8693 10911 2.342651 CAGTATGAGAGCGACAACAACG 59.657 50.000 0.00 0.00 39.69 4.10
8694 10912 1.654105 GTATGAGAGCGACAACAACGG 59.346 52.381 0.00 0.00 0.00 4.44
8695 10913 1.291877 ATGAGAGCGACAACAACGGC 61.292 55.000 0.00 0.00 0.00 5.68
8696 10914 1.954146 GAGAGCGACAACAACGGCA 60.954 57.895 0.00 0.00 0.00 5.69
8697 10915 2.159272 GAGAGCGACAACAACGGCAC 62.159 60.000 0.00 0.00 0.00 5.01
8710 10928 2.742372 GGCACGTTGACGGCTCAT 60.742 61.111 8.52 0.00 44.95 2.90
8711 10929 2.325082 GGCACGTTGACGGCTCATT 61.325 57.895 8.52 0.00 44.95 2.57
8712 10930 1.132640 GCACGTTGACGGCTCATTC 59.867 57.895 8.52 0.00 44.95 2.67
8713 10931 1.291877 GCACGTTGACGGCTCATTCT 61.292 55.000 8.52 0.00 44.95 2.40
8714 10932 0.439985 CACGTTGACGGCTCATTCTG 59.560 55.000 8.52 0.00 44.95 3.02
8715 10933 0.670546 ACGTTGACGGCTCATTCTGG 60.671 55.000 8.52 0.00 44.95 3.86
8716 10934 1.796796 GTTGACGGCTCATTCTGGC 59.203 57.895 0.00 0.00 0.00 4.85
8721 10939 2.184322 GGCTCATTCTGGCGACGA 59.816 61.111 0.00 0.00 0.00 4.20
8722 10940 1.227380 GGCTCATTCTGGCGACGAT 60.227 57.895 0.00 0.00 0.00 3.73
8723 10941 0.032130 GGCTCATTCTGGCGACGATA 59.968 55.000 0.00 0.00 0.00 2.92
8724 10942 1.413382 GCTCATTCTGGCGACGATAG 58.587 55.000 0.00 0.00 46.19 2.08
8739 10957 3.924918 CGATAGTGGTCCTTCGATGAT 57.075 47.619 0.00 0.00 33.59 2.45
8740 10958 3.827625 CGATAGTGGTCCTTCGATGATC 58.172 50.000 0.00 0.00 33.59 2.92
8741 10959 3.504134 CGATAGTGGTCCTTCGATGATCT 59.496 47.826 0.00 0.00 33.59 2.75
8742 10960 4.378978 CGATAGTGGTCCTTCGATGATCTC 60.379 50.000 0.00 0.00 33.59 2.75
8743 10961 2.739943 AGTGGTCCTTCGATGATCTCA 58.260 47.619 0.00 0.00 0.00 3.27
8744 10962 3.099905 AGTGGTCCTTCGATGATCTCAA 58.900 45.455 0.00 0.00 0.00 3.02
8745 10963 3.515502 AGTGGTCCTTCGATGATCTCAAA 59.484 43.478 0.00 0.00 0.00 2.69
8746 10964 4.020218 AGTGGTCCTTCGATGATCTCAAAA 60.020 41.667 0.00 0.00 0.00 2.44
8747 10965 4.878397 GTGGTCCTTCGATGATCTCAAAAT 59.122 41.667 0.00 0.00 0.00 1.82
8748 10966 5.355350 GTGGTCCTTCGATGATCTCAAAATT 59.645 40.000 0.00 0.00 0.00 1.82
8749 10967 5.945784 TGGTCCTTCGATGATCTCAAAATTT 59.054 36.000 0.00 0.00 0.00 1.82
8750 10968 6.434028 TGGTCCTTCGATGATCTCAAAATTTT 59.566 34.615 0.00 0.00 0.00 1.82
8751 10969 6.749118 GGTCCTTCGATGATCTCAAAATTTTG 59.251 38.462 22.40 22.40 39.48 2.44
8752 10970 7.362056 GGTCCTTCGATGATCTCAAAATTTTGA 60.362 37.037 27.39 27.39 44.31 2.69
8753 10971 8.186821 GTCCTTCGATGATCTCAAAATTTTGAT 58.813 33.333 28.86 18.12 45.26 2.57
8754 10972 8.186163 TCCTTCGATGATCTCAAAATTTTGATG 58.814 33.333 28.86 22.31 45.26 3.07
8755 10973 7.972277 CCTTCGATGATCTCAAAATTTTGATGT 59.028 33.333 28.86 21.15 45.26 3.06
8756 10974 9.992910 CTTCGATGATCTCAAAATTTTGATGTA 57.007 29.630 28.86 19.20 45.26 2.29
8757 10975 9.992910 TTCGATGATCTCAAAATTTTGATGTAG 57.007 29.630 28.86 19.07 45.26 2.74
8758 10976 9.166173 TCGATGATCTCAAAATTTTGATGTAGT 57.834 29.630 28.86 17.28 45.26 2.73
8759 10977 9.778993 CGATGATCTCAAAATTTTGATGTAGTT 57.221 29.630 28.86 14.98 45.26 2.24
8779 10997 9.865321 TGTAGTTTTTATTACGACTAAGATGCT 57.135 29.630 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
167 169 3.876589 TTGCTCGTGGGCTCCGAAC 62.877 63.158 0.00 0.00 33.34 3.95
187 189 1.674817 CCCTCTAACATCCGCAAACGT 60.675 52.381 0.00 0.00 37.70 3.99
190 192 0.393808 GCCCCTCTAACATCCGCAAA 60.394 55.000 0.00 0.00 0.00 3.68
191 193 1.223487 GCCCCTCTAACATCCGCAA 59.777 57.895 0.00 0.00 0.00 4.85
192 194 2.908015 GCCCCTCTAACATCCGCA 59.092 61.111 0.00 0.00 0.00 5.69
195 197 2.280186 CGCGCCCCTCTAACATCC 60.280 66.667 0.00 0.00 0.00 3.51
219 223 1.802636 CTACGCGTACCCGAGGAAA 59.197 57.895 16.41 0.00 38.28 3.13
239 243 1.771255 CTCAGGTTTAGGGCCAGCTAT 59.229 52.381 6.18 0.00 0.00 2.97
252 256 4.335647 CCTGCCCGTGCTCAGGTT 62.336 66.667 0.00 0.00 43.66 3.50
319 323 1.669115 CCACACCGCCTCTCTGTTG 60.669 63.158 0.00 0.00 0.00 3.33
545 603 2.646175 CGGTCTTCTCCCGGCAGAA 61.646 63.158 7.79 7.79 41.78 3.02
546 604 3.068691 CGGTCTTCTCCCGGCAGA 61.069 66.667 0.00 0.00 41.78 4.26
553 611 1.378124 CCGTCTCCTCGGTCTTCTCC 61.378 65.000 0.00 0.00 44.77 3.71
569 627 3.602030 AGTCAGTCCCTCCCCCGT 61.602 66.667 0.00 0.00 0.00 5.28
582 640 3.706373 GAAGCCGGAGCCCAGTCA 61.706 66.667 5.05 0.00 41.25 3.41
790 859 0.733729 AACTAGTCTCTACAGCGCCG 59.266 55.000 2.29 0.00 0.00 6.46
852 921 7.021196 CCAAAAATAGTAGTCCACGAACAATG 58.979 38.462 0.00 0.00 0.00 2.82
939 1008 1.446792 CACCTGATCAAGCGCTCGT 60.447 57.895 12.06 0.00 0.00 4.18
1007 1077 2.240500 GGACGAAGCCGCATAGCTG 61.241 63.158 0.00 0.00 44.11 4.24
1026 1096 0.399233 GTCCTAGGGAGACATGGGCT 60.399 60.000 9.46 0.00 43.25 5.19
1028 1098 2.491825 CCTAGTCCTAGGGAGACATGGG 60.492 59.091 9.46 0.45 46.96 4.00
1045 1115 1.808133 GCAAAGAGTCGCCATCCCTAG 60.808 57.143 0.00 0.00 0.00 3.02
1046 1116 0.178068 GCAAAGAGTCGCCATCCCTA 59.822 55.000 0.00 0.00 0.00 3.53
1047 1117 1.078143 GCAAAGAGTCGCCATCCCT 60.078 57.895 0.00 0.00 0.00 4.20
1048 1118 3.502572 GCAAAGAGTCGCCATCCC 58.497 61.111 0.00 0.00 0.00 3.85
1063 1133 5.512232 GGGGAAAAAGAACATACATTTGGCA 60.512 40.000 0.00 0.00 0.00 4.92
1067 1137 5.303333 ACACGGGGAAAAAGAACATACATTT 59.697 36.000 0.00 0.00 0.00 2.32
1070 1140 3.566322 CACACGGGGAAAAAGAACATACA 59.434 43.478 0.00 0.00 0.00 2.29
1072 1142 2.554893 GCACACGGGGAAAAAGAACATA 59.445 45.455 0.00 0.00 0.00 2.29
1073 1143 1.339929 GCACACGGGGAAAAAGAACAT 59.660 47.619 0.00 0.00 0.00 2.71
1087 1157 2.742372 CCGAGGGGAAAGCACACG 60.742 66.667 0.00 0.00 34.06 4.49
1126 1196 0.755698 ATCCGCCACCTATCTGACGT 60.756 55.000 0.00 0.00 0.00 4.34
1128 1198 2.628657 ACTAATCCGCCACCTATCTGAC 59.371 50.000 0.00 0.00 0.00 3.51
1167 1237 8.057536 AGTCACCATTGTTAACAAAACTGTAA 57.942 30.769 23.97 3.80 39.55 2.41
1205 1275 8.837389 ACAGTACCTTCTTGTTCTTTATGAAAC 58.163 33.333 0.00 0.00 36.30 2.78
1211 1281 5.235616 CGCAACAGTACCTTCTTGTTCTTTA 59.764 40.000 0.00 0.00 0.00 1.85
1225 1295 2.746269 TGTAGTCCAACGCAACAGTAC 58.254 47.619 0.00 0.00 0.00 2.73
1259 1329 4.124851 AGAGTAAGTAAATGACAGCCCG 57.875 45.455 0.00 0.00 0.00 6.13
1277 1347 9.093970 ACCGGTAAAAAGAAATTTCAAAAAGAG 57.906 29.630 19.99 5.30 0.00 2.85
1279 1349 8.053653 CGACCGGTAAAAAGAAATTTCAAAAAG 58.946 33.333 19.99 3.99 0.00 2.27
1280 1350 7.464311 GCGACCGGTAAAAAGAAATTTCAAAAA 60.464 33.333 19.99 0.00 0.00 1.94
1330 1402 0.249447 CGGTGTGAGTTCAGCAGTCA 60.249 55.000 0.00 0.00 35.85 3.41
1365 1437 1.066908 CAAGATCTCCTCACTCGGCTC 59.933 57.143 0.00 0.00 0.00 4.70
1378 1450 5.690464 AATCACTAACTCCAGCAAGATCT 57.310 39.130 0.00 0.00 0.00 2.75
1381 1453 6.798427 ATCTAATCACTAACTCCAGCAAGA 57.202 37.500 0.00 0.00 0.00 3.02
1384 1456 5.674525 CCAATCTAATCACTAACTCCAGCA 58.325 41.667 0.00 0.00 0.00 4.41
1485 1557 0.106708 GGCTTATCATGTCCTGCGGA 59.893 55.000 0.00 0.00 0.00 5.54
1572 1648 3.945285 ACTGTTCAACACGTTGGATCTTT 59.055 39.130 9.90 0.00 40.78 2.52
1709 1793 7.010738 CAGTGCTGAATTCACAACAAAATTCTT 59.989 33.333 3.38 0.00 40.77 2.52
1775 1859 0.033601 TCCAATTAACGGCAGGGCAT 60.034 50.000 0.00 0.00 0.00 4.40
1799 1883 1.841302 TTGCCAGTCCGCATCTCCTT 61.841 55.000 0.00 0.00 38.87 3.36
2259 2343 1.197430 CCTCAGGCTCCTCCTTGTGT 61.197 60.000 0.00 0.00 44.75 3.72
2338 2422 4.202441 CACCCTATGCTAGATGTGCTTTT 58.798 43.478 0.00 0.00 0.00 2.27
2458 2542 7.598869 GGGAATAAGAAATCACAAGTTTGGTTC 59.401 37.037 0.00 0.00 0.00 3.62
2579 2663 7.593644 GTGAAGACATAACGCCTTAAAATTGTT 59.406 33.333 0.00 0.00 0.00 2.83
2593 2677 6.801539 TCCTGTTCATTGTGAAGACATAAC 57.198 37.500 0.00 0.00 37.00 1.89
2643 2727 5.964958 ACACTGTTTAATCATGAGTTGGG 57.035 39.130 0.00 0.00 0.00 4.12
2659 2743 8.594550 AGGTGAATTAGTATCTTGTTACACTGT 58.405 33.333 0.00 0.00 0.00 3.55
2690 2774 4.261801 AGATTGGAAAAGGATGGTGTACG 58.738 43.478 0.00 0.00 0.00 3.67
2691 2775 5.710099 TCAAGATTGGAAAAGGATGGTGTAC 59.290 40.000 0.00 0.00 0.00 2.90
2912 2997 4.383649 CACTTCCAACATCTTTTGCGAATG 59.616 41.667 0.00 0.00 0.00 2.67
2955 3040 6.791887 ACCATGATTAGAGCATGATTTACG 57.208 37.500 7.67 0.00 44.49 3.18
2966 3051 5.440610 ACAAGCCCTTAACCATGATTAGAG 58.559 41.667 0.00 0.00 0.00 2.43
3001 3089 4.701956 ACGCCCACTAAATTTCTCATTG 57.298 40.909 0.00 0.00 0.00 2.82
3011 3099 1.733758 CGCACGTACGCCCACTAAA 60.734 57.895 16.72 0.00 0.00 1.85
3046 3134 8.668353 GTCAATCAACAATACATACACTGTCAT 58.332 33.333 0.00 0.00 39.39 3.06
3074 3162 8.934023 ACTAGTTCAAAATGAGGTATCCAAAA 57.066 30.769 0.00 0.00 0.00 2.44
3134 3222 4.481368 TTGTATAAACCAGTGCTCCGAT 57.519 40.909 0.00 0.00 0.00 4.18
3255 3343 6.284891 TCTGTTGGAAATCCATTCAAATCC 57.715 37.500 2.38 0.00 46.97 3.01
3275 3363 0.846015 TGGCCATTGAGGGGTATCTG 59.154 55.000 0.00 0.00 38.09 2.90
3295 3383 1.146263 GACTCCCAATAGGCCCACG 59.854 63.158 0.00 0.00 34.51 4.94
3300 3388 1.139853 CTCACTGGACTCCCAATAGGC 59.860 57.143 0.00 0.00 42.98 3.93
3347 3435 6.266558 GGATGAAGTAGAAGGAGATGAAGCTA 59.733 42.308 0.00 0.00 0.00 3.32
3363 3451 5.545063 TGTTCACAGAACTGGATGAAGTA 57.455 39.130 10.79 0.00 31.94 2.24
3384 3472 5.128205 TGCTGAGAAGTTCCCATGATATTG 58.872 41.667 0.00 0.00 0.00 1.90
3396 3484 2.616510 CGGATTTCCCTGCTGAGAAGTT 60.617 50.000 0.00 0.00 0.00 2.66
3397 3485 1.065854 CGGATTTCCCTGCTGAGAAGT 60.066 52.381 0.00 0.00 0.00 3.01
3426 3514 2.744202 CACTGCACCACCAGACTTAATC 59.256 50.000 0.00 0.00 36.67 1.75
3492 3580 6.715264 CACTACCCTGGGTATCCAAATTAATC 59.285 42.308 25.32 0.00 43.51 1.75
3499 3587 1.209621 GCACTACCCTGGGTATCCAA 58.790 55.000 25.32 5.54 43.51 3.53
3527 3615 1.000607 CATTGTTCTGCTGCTGTTGCT 60.001 47.619 0.00 0.00 40.48 3.91
3536 3624 5.005740 TCTGCAATAAGACATTGTTCTGCT 58.994 37.500 0.00 0.00 0.00 4.24
3570 3658 3.871006 TCATTTGAGTACGATCACCATGC 59.129 43.478 0.00 0.00 0.00 4.06
3573 3661 5.116180 GGAATCATTTGAGTACGATCACCA 58.884 41.667 0.00 0.00 0.00 4.17
3574 3662 4.511826 GGGAATCATTTGAGTACGATCACC 59.488 45.833 0.00 0.00 0.00 4.02
3644 3732 9.315525 CACCAGAATATAGATTCATATGAGCAG 57.684 37.037 12.39 0.00 43.51 4.24
3685 3773 1.305971 TTGGCATTCCATGGTGGGG 60.306 57.895 12.58 1.36 43.05 4.96
3690 3778 1.606885 AAGGCGTTGGCATTCCATGG 61.607 55.000 4.97 4.97 39.25 3.66
3878 3966 4.931914 ACCAGCTAGTCTACCACTAAAGA 58.068 43.478 0.00 0.00 37.13 2.52
3953 4041 3.356290 ACCCCAAGTTGCTCATGAATAC 58.644 45.455 0.00 0.00 0.00 1.89
3954 4042 3.737559 ACCCCAAGTTGCTCATGAATA 57.262 42.857 0.00 0.00 0.00 1.75
3958 4046 2.795329 AGTTACCCCAAGTTGCTCATG 58.205 47.619 0.00 0.00 0.00 3.07
3968 4056 1.225148 GGCGGCATAGTTACCCCAA 59.775 57.895 3.07 0.00 0.00 4.12
3975 4063 1.202651 GGTACAGATGGCGGCATAGTT 60.203 52.381 25.86 13.61 0.00 2.24
4001 4089 5.766670 TGCTGGAAATAATGAATGAGGCTAG 59.233 40.000 0.00 0.00 0.00 3.42
4375 4463 3.217626 GCCCTTGAATCCCATGACTAAG 58.782 50.000 0.00 0.00 0.00 2.18
4413 4501 2.026822 ACAGTGTGGATTGGGATCTGAC 60.027 50.000 0.00 0.00 32.66 3.51
4543 4631 4.681074 TGATTATACACATCTGGCGGAA 57.319 40.909 0.00 0.00 0.00 4.30
4802 4890 3.836949 CAAGTGTTAATGTGTCATGCCC 58.163 45.455 0.00 0.00 0.00 5.36
5019 5107 0.667993 TTCCCGCAAAAGCAGTCAAG 59.332 50.000 0.00 0.00 0.00 3.02
5078 5166 3.289836 TGTGGTGGCATAGATCCAATTG 58.710 45.455 0.00 0.00 35.01 2.32
5608 7762 2.412770 GCAGGAACAAAAATTGCATCCG 59.587 45.455 0.00 6.50 41.98 4.18
5792 7946 6.412362 GAAGAGAAGCTTCCACTATATCCA 57.588 41.667 22.81 0.00 45.90 3.41
5969 8125 2.530177 ACTCAGCGATGATACAACACG 58.470 47.619 2.72 0.00 0.00 4.49
6110 8266 7.768120 AGGACTCACACTAATTCATGAGAAATC 59.232 37.037 7.08 4.53 40.92 2.17
6524 8681 5.181748 AGTGGACTGCAAGATTTCATCTAC 58.818 41.667 0.00 0.00 39.08 2.59
6753 8910 2.135933 GATTATACTGGCTCACGTGGC 58.864 52.381 17.00 17.27 0.00 5.01
6904 9069 2.064434 TGTTTTGGCTCATGGACACA 57.936 45.000 0.00 0.00 29.21 3.72
7012 9177 6.731292 ACCAGCAAATAATTATTTCCCTCC 57.269 37.500 18.50 7.05 33.88 4.30
7167 9332 3.135530 AGATTCTGGAACTCATACTGCCC 59.864 47.826 0.00 0.00 0.00 5.36
7204 9369 9.784531 TTCTGATTTCCCTATGAATCACTAATC 57.215 33.333 0.00 0.00 31.67 1.75
7378 9553 7.549839 TCCTGGATTAAATTGAATGAGCAAAG 58.450 34.615 0.00 0.00 0.00 2.77
7576 9751 2.599645 AATGCTCGATTCGGCTGGCT 62.600 55.000 16.65 1.99 0.00 4.75
7594 9769 1.300620 CGCACCGTCACCAGAGAAA 60.301 57.895 0.00 0.00 0.00 2.52
7665 9843 4.729868 ACCTCAGTAGAAGTTGCCAAATT 58.270 39.130 0.00 0.00 0.00 1.82
7737 9954 0.961019 GGCACAGCACCTGAAAATGA 59.039 50.000 0.00 0.00 35.18 2.57
7806 10023 4.196778 TGGCCGGCACACTTTCCA 62.197 61.111 30.85 11.59 0.00 3.53
7983 10200 1.068281 CTCTATGAGCAGCCACACGAT 59.932 52.381 0.00 0.00 0.00 3.73
8008 10225 0.695924 TACCACACCACCATTCTGGG 59.304 55.000 0.00 0.00 43.37 4.45
8103 10320 2.362077 GGCAGAGCAAAAACTGGAAAGA 59.638 45.455 0.00 0.00 35.05 2.52
8104 10321 2.747436 GGCAGAGCAAAAACTGGAAAG 58.253 47.619 0.00 0.00 35.05 2.62
8123 10340 0.808755 GGTAAATCCACAGCAACCGG 59.191 55.000 0.00 0.00 35.97 5.28
8136 10354 6.876257 GGAGAATATGATCAGCGAAGGTAAAT 59.124 38.462 0.09 0.00 35.08 1.40
8153 10371 2.401583 TTGCGCACACAGGAGAATAT 57.598 45.000 11.12 0.00 0.00 1.28
8171 10389 4.368391 CACGCAGAGAGGTGCTTT 57.632 55.556 0.00 0.00 41.62 3.51
8226 10444 2.464865 CTTAGCATCTCCGTCCTTTCG 58.535 52.381 0.00 0.00 0.00 3.46
8239 10457 3.264450 ACCTACTTTGACAGCCTTAGCAT 59.736 43.478 0.00 0.00 43.56 3.79
8296 10514 1.339151 CCTAGAGTTTGCCCTGACCAC 60.339 57.143 0.00 0.00 0.00 4.16
8297 10515 0.984230 CCTAGAGTTTGCCCTGACCA 59.016 55.000 0.00 0.00 0.00 4.02
8299 10517 0.615850 AGCCTAGAGTTTGCCCTGAC 59.384 55.000 0.00 0.00 0.00 3.51
8301 10519 1.003580 TGAAGCCTAGAGTTTGCCCTG 59.996 52.381 0.00 0.00 0.00 4.45
8324 10542 3.262936 CGAATCAACGGGCTTGCA 58.737 55.556 0.00 0.00 0.00 4.08
8333 10551 0.462759 CAGAGGGGAGCCGAATCAAC 60.463 60.000 0.00 0.00 0.00 3.18
8335 10553 2.735772 GCAGAGGGGAGCCGAATCA 61.736 63.158 0.00 0.00 0.00 2.57
8342 10560 3.541713 CGGTAGGCAGAGGGGAGC 61.542 72.222 0.00 0.00 0.00 4.70
8362 10580 1.669115 CTCTGCCACCAGTCAACGG 60.669 63.158 0.00 0.00 40.09 4.44
8365 10583 0.972134 CTCTCTCTGCCACCAGTCAA 59.028 55.000 0.00 0.00 40.09 3.18
8368 10586 1.611851 CCCTCTCTCTGCCACCAGT 60.612 63.158 0.00 0.00 40.09 4.00
8379 10597 1.535202 GGCATCGGGATCCCTCTCT 60.535 63.158 28.42 7.31 0.00 3.10
8383 10601 1.384502 TGAAGGCATCGGGATCCCT 60.385 57.895 28.42 8.11 27.69 4.20
8384 10602 1.227973 GTGAAGGCATCGGGATCCC 60.228 63.158 22.12 22.12 0.00 3.85
8419 10637 3.339093 CACCAAGACCCCCTCCCC 61.339 72.222 0.00 0.00 0.00 4.81
8420 10638 4.048470 GCACCAAGACCCCCTCCC 62.048 72.222 0.00 0.00 0.00 4.30
8423 10641 2.452491 AAGGCACCAAGACCCCCT 60.452 61.111 0.00 0.00 0.00 4.79
8424 10642 2.035783 GAAGGCACCAAGACCCCC 59.964 66.667 0.00 0.00 0.00 5.40
8425 10643 2.359975 CGAAGGCACCAAGACCCC 60.360 66.667 0.00 0.00 0.00 4.95
8426 10644 3.056328 GCGAAGGCACCAAGACCC 61.056 66.667 0.00 0.00 39.62 4.46
8427 10645 2.032681 AGCGAAGGCACCAAGACC 59.967 61.111 0.00 0.00 43.41 3.85
8428 10646 2.383527 CGAGCGAAGGCACCAAGAC 61.384 63.158 0.00 0.00 43.41 3.01
8429 10647 2.048222 CGAGCGAAGGCACCAAGA 60.048 61.111 0.00 0.00 43.41 3.02
8430 10648 3.121030 CCGAGCGAAGGCACCAAG 61.121 66.667 0.00 0.00 43.41 3.61
8450 10668 4.595538 AAGCGTCGCCGTCCACAA 62.596 61.111 14.86 0.00 36.15 3.33
8452 10670 4.719369 AGAAGCGTCGCCGTCCAC 62.719 66.667 14.86 0.00 36.15 4.02
8453 10671 3.509137 AAAGAAGCGTCGCCGTCCA 62.509 57.895 14.86 0.00 36.15 4.02
8454 10672 2.737376 AAAGAAGCGTCGCCGTCC 60.737 61.111 14.86 0.45 36.15 4.79
8455 10673 1.945776 CTCAAAGAAGCGTCGCCGTC 61.946 60.000 14.86 11.96 36.15 4.79
8456 10674 2.022129 CTCAAAGAAGCGTCGCCGT 61.022 57.895 14.86 1.35 36.15 5.68
8457 10675 1.557443 AACTCAAAGAAGCGTCGCCG 61.557 55.000 14.86 0.00 37.07 6.46
8458 10676 0.586802 AAACTCAAAGAAGCGTCGCC 59.413 50.000 14.86 0.00 0.00 5.54
8459 10677 1.003866 ACAAACTCAAAGAAGCGTCGC 60.004 47.619 9.80 9.80 0.00 5.19
8460 10678 2.540101 AGACAAACTCAAAGAAGCGTCG 59.460 45.455 0.00 0.00 0.00 5.12
8461 10679 4.271291 AGAAGACAAACTCAAAGAAGCGTC 59.729 41.667 0.00 0.00 0.00 5.19
8462 10680 4.034510 CAGAAGACAAACTCAAAGAAGCGT 59.965 41.667 0.00 0.00 0.00 5.07
8463 10681 4.521943 CAGAAGACAAACTCAAAGAAGCG 58.478 43.478 0.00 0.00 0.00 4.68
8464 10682 4.286101 GCAGAAGACAAACTCAAAGAAGC 58.714 43.478 0.00 0.00 0.00 3.86
8465 10683 4.521943 CGCAGAAGACAAACTCAAAGAAG 58.478 43.478 0.00 0.00 0.00 2.85
8466 10684 3.242739 GCGCAGAAGACAAACTCAAAGAA 60.243 43.478 0.30 0.00 0.00 2.52
8467 10685 2.287915 GCGCAGAAGACAAACTCAAAGA 59.712 45.455 0.30 0.00 0.00 2.52
8468 10686 2.289002 AGCGCAGAAGACAAACTCAAAG 59.711 45.455 11.47 0.00 0.00 2.77
8469 10687 2.287915 GAGCGCAGAAGACAAACTCAAA 59.712 45.455 11.47 0.00 0.00 2.69
8470 10688 1.867233 GAGCGCAGAAGACAAACTCAA 59.133 47.619 11.47 0.00 0.00 3.02
8471 10689 1.069204 AGAGCGCAGAAGACAAACTCA 59.931 47.619 11.47 0.00 0.00 3.41
8472 10690 1.458827 CAGAGCGCAGAAGACAAACTC 59.541 52.381 11.47 0.00 0.00 3.01
8473 10691 1.069204 TCAGAGCGCAGAAGACAAACT 59.931 47.619 11.47 0.00 0.00 2.66
8474 10692 1.502231 TCAGAGCGCAGAAGACAAAC 58.498 50.000 11.47 0.00 0.00 2.93
8475 10693 2.341257 GATCAGAGCGCAGAAGACAAA 58.659 47.619 11.47 0.00 0.00 2.83
8476 10694 1.404717 GGATCAGAGCGCAGAAGACAA 60.405 52.381 11.47 0.00 0.00 3.18
8477 10695 0.174389 GGATCAGAGCGCAGAAGACA 59.826 55.000 11.47 0.00 0.00 3.41
8478 10696 0.459489 AGGATCAGAGCGCAGAAGAC 59.541 55.000 11.47 0.00 0.00 3.01
8479 10697 0.743688 GAGGATCAGAGCGCAGAAGA 59.256 55.000 11.47 1.65 33.17 2.87
8480 10698 0.249405 GGAGGATCAGAGCGCAGAAG 60.249 60.000 11.47 0.00 36.25 2.85
8481 10699 0.685785 AGGAGGATCAGAGCGCAGAA 60.686 55.000 11.47 0.00 36.25 3.02
8482 10700 0.685785 AAGGAGGATCAGAGCGCAGA 60.686 55.000 11.47 4.68 36.25 4.26
8483 10701 0.530211 CAAGGAGGATCAGAGCGCAG 60.530 60.000 11.47 0.00 36.25 5.18
8484 10702 0.972471 TCAAGGAGGATCAGAGCGCA 60.972 55.000 11.47 0.00 36.25 6.09
8485 10703 0.249405 CTCAAGGAGGATCAGAGCGC 60.249 60.000 0.00 0.00 36.25 5.92
8486 10704 1.110442 ACTCAAGGAGGATCAGAGCG 58.890 55.000 0.00 0.00 34.67 5.03
8487 10705 2.499289 TGAACTCAAGGAGGATCAGAGC 59.501 50.000 0.00 0.00 34.67 4.09
8488 10706 4.650588 AGATGAACTCAAGGAGGATCAGAG 59.349 45.833 0.00 0.00 34.75 3.35
8489 10707 4.405036 CAGATGAACTCAAGGAGGATCAGA 59.595 45.833 0.00 0.00 34.75 3.27
8490 10708 4.443175 CCAGATGAACTCAAGGAGGATCAG 60.443 50.000 0.00 0.00 34.75 2.90
8491 10709 3.453717 CCAGATGAACTCAAGGAGGATCA 59.546 47.826 0.00 6.50 36.25 2.92
8492 10710 3.708631 TCCAGATGAACTCAAGGAGGATC 59.291 47.826 0.00 0.00 33.35 3.36
8493 10711 3.454082 GTCCAGATGAACTCAAGGAGGAT 59.546 47.826 0.00 0.00 33.35 3.24
8494 10712 2.834549 GTCCAGATGAACTCAAGGAGGA 59.165 50.000 0.00 0.00 33.35 3.71
8495 10713 2.417924 CGTCCAGATGAACTCAAGGAGG 60.418 54.545 0.00 0.00 33.35 4.30
8496 10714 2.232452 ACGTCCAGATGAACTCAAGGAG 59.768 50.000 0.00 0.00 35.52 3.69
8497 10715 2.248248 ACGTCCAGATGAACTCAAGGA 58.752 47.619 0.00 0.00 0.00 3.36
8498 10716 2.751166 ACGTCCAGATGAACTCAAGG 57.249 50.000 0.00 0.00 0.00 3.61
8499 10717 5.410924 TGATTACGTCCAGATGAACTCAAG 58.589 41.667 0.00 0.00 0.00 3.02
8500 10718 5.400066 TGATTACGTCCAGATGAACTCAA 57.600 39.130 0.00 0.00 0.00 3.02
8501 10719 5.400066 TTGATTACGTCCAGATGAACTCA 57.600 39.130 0.00 0.00 0.00 3.41
8502 10720 5.812642 ACATTGATTACGTCCAGATGAACTC 59.187 40.000 0.00 0.00 0.00 3.01
8503 10721 5.734720 ACATTGATTACGTCCAGATGAACT 58.265 37.500 0.00 0.00 0.00 3.01
8504 10722 7.715265 ATACATTGATTACGTCCAGATGAAC 57.285 36.000 0.00 0.00 0.00 3.18
8505 10723 8.856103 TCTATACATTGATTACGTCCAGATGAA 58.144 33.333 0.00 0.00 0.00 2.57
8506 10724 8.404107 TCTATACATTGATTACGTCCAGATGA 57.596 34.615 0.00 0.00 0.00 2.92
8507 10725 9.645059 AATCTATACATTGATTACGTCCAGATG 57.355 33.333 0.00 0.00 32.04 2.90
8511 10729 9.607988 ACAAAATCTATACATTGATTACGTCCA 57.392 29.630 0.00 0.00 32.50 4.02
8523 10741 8.960591 CCCAAGAAGACAACAAAATCTATACAT 58.039 33.333 0.00 0.00 0.00 2.29
8524 10742 7.393234 CCCCAAGAAGACAACAAAATCTATACA 59.607 37.037 0.00 0.00 0.00 2.29
8525 10743 7.628580 GCCCCAAGAAGACAACAAAATCTATAC 60.629 40.741 0.00 0.00 0.00 1.47
8526 10744 6.377146 GCCCCAAGAAGACAACAAAATCTATA 59.623 38.462 0.00 0.00 0.00 1.31
8527 10745 5.185828 GCCCCAAGAAGACAACAAAATCTAT 59.814 40.000 0.00 0.00 0.00 1.98
8528 10746 4.522789 GCCCCAAGAAGACAACAAAATCTA 59.477 41.667 0.00 0.00 0.00 1.98
8529 10747 3.321968 GCCCCAAGAAGACAACAAAATCT 59.678 43.478 0.00 0.00 0.00 2.40
8530 10748 3.653344 GCCCCAAGAAGACAACAAAATC 58.347 45.455 0.00 0.00 0.00 2.17
8531 10749 2.035832 CGCCCCAAGAAGACAACAAAAT 59.964 45.455 0.00 0.00 0.00 1.82
8532 10750 1.407258 CGCCCCAAGAAGACAACAAAA 59.593 47.619 0.00 0.00 0.00 2.44
8533 10751 1.028905 CGCCCCAAGAAGACAACAAA 58.971 50.000 0.00 0.00 0.00 2.83
8534 10752 0.821711 CCGCCCCAAGAAGACAACAA 60.822 55.000 0.00 0.00 0.00 2.83
8535 10753 1.228124 CCGCCCCAAGAAGACAACA 60.228 57.895 0.00 0.00 0.00 3.33
8536 10754 1.228154 ACCGCCCCAAGAAGACAAC 60.228 57.895 0.00 0.00 0.00 3.32
8537 10755 1.228124 CACCGCCCCAAGAAGACAA 60.228 57.895 0.00 0.00 0.00 3.18
8538 10756 2.111999 CTCACCGCCCCAAGAAGACA 62.112 60.000 0.00 0.00 0.00 3.41
8539 10757 1.376037 CTCACCGCCCCAAGAAGAC 60.376 63.158 0.00 0.00 0.00 3.01
8540 10758 0.909610 ATCTCACCGCCCCAAGAAGA 60.910 55.000 0.00 0.00 0.00 2.87
8541 10759 0.035056 AATCTCACCGCCCCAAGAAG 60.035 55.000 0.00 0.00 0.00 2.85
8542 10760 1.209504 CTAATCTCACCGCCCCAAGAA 59.790 52.381 0.00 0.00 0.00 2.52
8543 10761 0.830648 CTAATCTCACCGCCCCAAGA 59.169 55.000 0.00 0.00 0.00 3.02
8544 10762 0.179045 CCTAATCTCACCGCCCCAAG 60.179 60.000 0.00 0.00 0.00 3.61
8545 10763 1.632018 CCCTAATCTCACCGCCCCAA 61.632 60.000 0.00 0.00 0.00 4.12
8546 10764 2.070039 CCCTAATCTCACCGCCCCA 61.070 63.158 0.00 0.00 0.00 4.96
8547 10765 1.632965 AACCCTAATCTCACCGCCCC 61.633 60.000 0.00 0.00 0.00 5.80
8548 10766 0.255033 AAACCCTAATCTCACCGCCC 59.745 55.000 0.00 0.00 0.00 6.13
8549 10767 1.209747 AGAAACCCTAATCTCACCGCC 59.790 52.381 0.00 0.00 0.00 6.13
8550 10768 2.552031 GAGAAACCCTAATCTCACCGC 58.448 52.381 0.00 0.00 41.37 5.68
8551 10769 2.165845 ACGAGAAACCCTAATCTCACCG 59.834 50.000 0.00 0.00 41.73 4.94
8552 10770 3.194968 TGACGAGAAACCCTAATCTCACC 59.805 47.826 0.00 0.00 41.73 4.02
8553 10771 4.451629 TGACGAGAAACCCTAATCTCAC 57.548 45.455 0.00 0.00 41.73 3.51
8554 10772 4.680708 GCATGACGAGAAACCCTAATCTCA 60.681 45.833 0.00 0.00 41.73 3.27
8555 10773 3.804873 GCATGACGAGAAACCCTAATCTC 59.195 47.826 0.00 0.00 38.94 2.75
8556 10774 3.798202 GCATGACGAGAAACCCTAATCT 58.202 45.455 0.00 0.00 0.00 2.40
8570 10788 1.273887 GAAATCTCGCCGCATGACG 59.726 57.895 0.00 0.00 43.15 4.35
8571 10789 0.302890 CTGAAATCTCGCCGCATGAC 59.697 55.000 0.00 0.00 0.00 3.06
8572 10790 0.175531 TCTGAAATCTCGCCGCATGA 59.824 50.000 0.00 0.00 0.00 3.07
8573 10791 1.194098 GATCTGAAATCTCGCCGCATG 59.806 52.381 0.00 0.00 0.00 4.06
8574 10792 1.069823 AGATCTGAAATCTCGCCGCAT 59.930 47.619 0.00 0.00 0.00 4.73
8575 10793 0.461548 AGATCTGAAATCTCGCCGCA 59.538 50.000 0.00 0.00 0.00 5.69
8576 10794 2.423926 TAGATCTGAAATCTCGCCGC 57.576 50.000 5.18 0.00 0.00 6.53
8577 10795 5.553290 TCTATAGATCTGAAATCTCGCCG 57.447 43.478 5.18 0.00 0.00 6.46
8578 10796 6.071616 ACCTTCTATAGATCTGAAATCTCGCC 60.072 42.308 5.18 0.00 0.00 5.54
8579 10797 6.919721 ACCTTCTATAGATCTGAAATCTCGC 58.080 40.000 5.18 0.00 0.00 5.03
8580 10798 9.405587 GAAACCTTCTATAGATCTGAAATCTCG 57.594 37.037 5.18 0.00 0.00 4.04
8584 10802 9.319143 CGTTGAAACCTTCTATAGATCTGAAAT 57.681 33.333 5.18 0.00 0.00 2.17
8585 10803 7.277981 GCGTTGAAACCTTCTATAGATCTGAAA 59.722 37.037 5.18 0.00 0.00 2.69
8586 10804 6.757010 GCGTTGAAACCTTCTATAGATCTGAA 59.243 38.462 5.18 0.00 0.00 3.02
8587 10805 6.273825 GCGTTGAAACCTTCTATAGATCTGA 58.726 40.000 5.18 0.00 0.00 3.27
8588 10806 5.463724 GGCGTTGAAACCTTCTATAGATCTG 59.536 44.000 5.18 0.00 0.00 2.90
8589 10807 5.602628 GGCGTTGAAACCTTCTATAGATCT 58.397 41.667 2.58 0.00 0.00 2.75
8590 10808 4.444720 CGGCGTTGAAACCTTCTATAGATC 59.555 45.833 2.58 0.00 0.00 2.75
8591 10809 4.098960 TCGGCGTTGAAACCTTCTATAGAT 59.901 41.667 6.85 0.00 0.00 1.98
8592 10810 3.444742 TCGGCGTTGAAACCTTCTATAGA 59.555 43.478 6.85 0.00 0.00 1.98
8593 10811 3.550678 GTCGGCGTTGAAACCTTCTATAG 59.449 47.826 6.85 0.00 0.00 1.31
8594 10812 3.514645 GTCGGCGTTGAAACCTTCTATA 58.485 45.455 6.85 0.00 0.00 1.31
8595 10813 2.344025 GTCGGCGTTGAAACCTTCTAT 58.656 47.619 6.85 0.00 0.00 1.98
8596 10814 1.787012 GTCGGCGTTGAAACCTTCTA 58.213 50.000 6.85 0.00 0.00 2.10
8597 10815 1.219522 CGTCGGCGTTGAAACCTTCT 61.220 55.000 6.85 0.00 0.00 2.85
8598 10816 1.203313 CGTCGGCGTTGAAACCTTC 59.797 57.895 6.85 0.00 0.00 3.46
8599 10817 1.227321 TCGTCGGCGTTGAAACCTT 60.227 52.632 10.18 0.00 39.49 3.50
8600 10818 1.952635 GTCGTCGGCGTTGAAACCT 60.953 57.895 10.18 0.00 39.49 3.50
8601 10819 0.664166 TAGTCGTCGGCGTTGAAACC 60.664 55.000 10.18 0.00 39.49 3.27
8602 10820 0.432361 GTAGTCGTCGGCGTTGAAAC 59.568 55.000 10.18 0.00 39.49 2.78
8603 10821 0.998226 CGTAGTCGTCGGCGTTGAAA 60.998 55.000 10.18 0.00 39.49 2.69
8604 10822 1.440850 CGTAGTCGTCGGCGTTGAA 60.441 57.895 10.18 0.00 39.49 2.69
8605 10823 2.174107 CGTAGTCGTCGGCGTTGA 59.826 61.111 10.18 2.89 39.49 3.18
8606 10824 2.872925 CCGTAGTCGTCGGCGTTG 60.873 66.667 10.18 0.00 41.48 4.10
8612 10830 1.804326 CCCAAAGCCGTAGTCGTCG 60.804 63.158 0.00 0.00 35.01 5.12
8613 10831 1.447314 CCCCAAAGCCGTAGTCGTC 60.447 63.158 0.00 0.00 35.01 4.20
8614 10832 2.660802 CCCCAAAGCCGTAGTCGT 59.339 61.111 0.00 0.00 35.01 4.34
8615 10833 2.818274 GCCCCAAAGCCGTAGTCG 60.818 66.667 0.00 0.00 0.00 4.18
8616 10834 2.818274 CGCCCCAAAGCCGTAGTC 60.818 66.667 0.00 0.00 0.00 2.59
8618 10836 3.379865 TAGCGCCCCAAAGCCGTAG 62.380 63.158 2.29 0.00 0.00 3.51
8619 10837 3.379865 CTAGCGCCCCAAAGCCGTA 62.380 63.158 2.29 0.00 0.00 4.02
8620 10838 4.778143 CTAGCGCCCCAAAGCCGT 62.778 66.667 2.29 0.00 0.00 5.68
8621 10839 4.778143 ACTAGCGCCCCAAAGCCG 62.778 66.667 2.29 0.00 0.00 5.52
8622 10840 2.824489 GACTAGCGCCCCAAAGCC 60.824 66.667 2.29 0.00 0.00 4.35
8623 10841 2.821679 AAGGACTAGCGCCCCAAAGC 62.822 60.000 2.29 0.00 0.00 3.51
8624 10842 0.539986 TAAGGACTAGCGCCCCAAAG 59.460 55.000 2.29 0.00 0.00 2.77
8625 10843 0.539986 CTAAGGACTAGCGCCCCAAA 59.460 55.000 2.29 0.00 0.00 3.28
8626 10844 1.335132 CCTAAGGACTAGCGCCCCAA 61.335 60.000 2.29 0.00 0.00 4.12
8627 10845 1.760875 CCTAAGGACTAGCGCCCCA 60.761 63.158 2.29 0.00 0.00 4.96
8628 10846 3.139565 CCTAAGGACTAGCGCCCC 58.860 66.667 2.29 0.00 0.00 5.80
8629 10847 2.134933 AGCCTAAGGACTAGCGCCC 61.135 63.158 2.29 0.00 0.00 6.13
8630 10848 1.068250 CAGCCTAAGGACTAGCGCC 59.932 63.158 2.29 0.00 0.00 6.53
8631 10849 0.249114 GACAGCCTAAGGACTAGCGC 60.249 60.000 0.00 0.00 0.00 5.92
8632 10850 1.103803 TGACAGCCTAAGGACTAGCG 58.896 55.000 0.00 0.00 0.00 4.26
8633 10851 3.133003 TCAATGACAGCCTAAGGACTAGC 59.867 47.826 0.00 0.00 0.00 3.42
8634 10852 4.160439 TGTCAATGACAGCCTAAGGACTAG 59.840 45.833 12.63 0.00 37.67 2.57
8635 10853 4.093743 TGTCAATGACAGCCTAAGGACTA 58.906 43.478 12.63 0.00 37.67 2.59
8636 10854 2.906389 TGTCAATGACAGCCTAAGGACT 59.094 45.455 12.63 0.00 37.67 3.85
8637 10855 3.334583 TGTCAATGACAGCCTAAGGAC 57.665 47.619 12.63 0.00 37.67 3.85
8638 10856 3.869912 GCTTGTCAATGACAGCCTAAGGA 60.870 47.826 16.10 0.00 43.69 3.36
8639 10857 2.421424 GCTTGTCAATGACAGCCTAAGG 59.579 50.000 16.10 3.94 43.69 2.69
8640 10858 3.341823 AGCTTGTCAATGACAGCCTAAG 58.658 45.455 23.82 16.71 43.69 2.18
8641 10859 3.423539 AGCTTGTCAATGACAGCCTAA 57.576 42.857 23.82 8.74 43.69 2.69
8642 10860 4.507710 CTTAGCTTGTCAATGACAGCCTA 58.492 43.478 23.82 20.00 43.69 3.93
8643 10861 3.341823 CTTAGCTTGTCAATGACAGCCT 58.658 45.455 23.82 20.76 43.69 4.58
8644 10862 2.159462 GCTTAGCTTGTCAATGACAGCC 60.159 50.000 23.82 16.32 43.69 4.85
8645 10863 2.746362 AGCTTAGCTTGTCAATGACAGC 59.254 45.455 21.60 21.60 43.69 4.40
8646 10864 3.126514 CCAGCTTAGCTTGTCAATGACAG 59.873 47.826 16.10 11.43 43.69 3.51
8647 10865 3.076621 CCAGCTTAGCTTGTCAATGACA 58.923 45.455 12.63 12.63 41.09 3.58
8648 10866 2.159462 GCCAGCTTAGCTTGTCAATGAC 60.159 50.000 3.00 6.41 36.40 3.06
8649 10867 2.086869 GCCAGCTTAGCTTGTCAATGA 58.913 47.619 3.00 0.00 36.40 2.57
8650 10868 1.133790 GGCCAGCTTAGCTTGTCAATG 59.866 52.381 3.00 0.00 36.40 2.82
8651 10869 1.467920 GGCCAGCTTAGCTTGTCAAT 58.532 50.000 3.00 0.00 36.40 2.57
8652 10870 0.609131 GGGCCAGCTTAGCTTGTCAA 60.609 55.000 11.90 0.00 36.40 3.18
8653 10871 1.002134 GGGCCAGCTTAGCTTGTCA 60.002 57.895 11.90 0.00 36.40 3.58
8654 10872 1.750780 GGGGCCAGCTTAGCTTGTC 60.751 63.158 3.00 1.84 36.40 3.18
8655 10873 2.356667 GGGGCCAGCTTAGCTTGT 59.643 61.111 3.00 0.00 36.40 3.16
8656 10874 1.751927 CTGGGGCCAGCTTAGCTTG 60.752 63.158 3.00 1.60 36.40 4.01
8657 10875 2.679716 CTGGGGCCAGCTTAGCTT 59.320 61.111 3.00 0.00 36.40 3.74
8666 10884 2.434843 CGCTCTCATACTGGGGCCA 61.435 63.158 4.39 0.00 0.00 5.36
8667 10885 2.134287 TCGCTCTCATACTGGGGCC 61.134 63.158 0.00 0.00 0.00 5.80
8668 10886 1.068250 GTCGCTCTCATACTGGGGC 59.932 63.158 0.00 0.00 0.00 5.80
8669 10887 0.824109 TTGTCGCTCTCATACTGGGG 59.176 55.000 0.00 0.00 0.00 4.96
8670 10888 1.204704 TGTTGTCGCTCTCATACTGGG 59.795 52.381 0.00 0.00 0.00 4.45
8671 10889 2.654749 TGTTGTCGCTCTCATACTGG 57.345 50.000 0.00 0.00 0.00 4.00
8672 10890 2.342651 CGTTGTTGTCGCTCTCATACTG 59.657 50.000 0.00 0.00 0.00 2.74
8673 10891 2.596452 CGTTGTTGTCGCTCTCATACT 58.404 47.619 0.00 0.00 0.00 2.12
8674 10892 1.654105 CCGTTGTTGTCGCTCTCATAC 59.346 52.381 0.00 0.00 0.00 2.39
8675 10893 1.990799 CCGTTGTTGTCGCTCTCATA 58.009 50.000 0.00 0.00 0.00 2.15
8676 10894 1.291877 GCCGTTGTTGTCGCTCTCAT 61.292 55.000 0.00 0.00 0.00 2.90
8677 10895 1.954146 GCCGTTGTTGTCGCTCTCA 60.954 57.895 0.00 0.00 0.00 3.27
8678 10896 1.954146 TGCCGTTGTTGTCGCTCTC 60.954 57.895 0.00 0.00 0.00 3.20
8679 10897 2.108157 TGCCGTTGTTGTCGCTCT 59.892 55.556 0.00 0.00 0.00 4.09
8680 10898 2.248431 GTGCCGTTGTTGTCGCTC 59.752 61.111 0.00 0.00 0.00 5.03
8681 10899 3.636043 CGTGCCGTTGTTGTCGCT 61.636 61.111 0.00 0.00 0.00 4.93
8682 10900 3.932313 ACGTGCCGTTGTTGTCGC 61.932 61.111 0.00 0.00 36.35 5.19
8693 10911 2.240612 GAATGAGCCGTCAACGTGCC 62.241 60.000 10.85 5.51 35.88 5.01
8694 10912 1.132640 GAATGAGCCGTCAACGTGC 59.867 57.895 1.48 5.04 35.88 5.34
8695 10913 0.439985 CAGAATGAGCCGTCAACGTG 59.560 55.000 1.48 0.00 39.69 4.49
8696 10914 0.670546 CCAGAATGAGCCGTCAACGT 60.671 55.000 1.48 0.00 39.69 3.99
8697 10915 1.970917 GCCAGAATGAGCCGTCAACG 61.971 60.000 0.00 0.00 39.69 4.10
8698 10916 1.796796 GCCAGAATGAGCCGTCAAC 59.203 57.895 0.00 0.00 39.69 3.18
8699 10917 1.741401 CGCCAGAATGAGCCGTCAA 60.741 57.895 0.00 0.00 39.69 3.18
8700 10918 2.125552 CGCCAGAATGAGCCGTCA 60.126 61.111 0.00 0.00 39.69 4.35
8701 10919 2.167861 GTCGCCAGAATGAGCCGTC 61.168 63.158 0.00 0.00 39.69 4.79
8702 10920 2.125512 GTCGCCAGAATGAGCCGT 60.126 61.111 0.00 0.00 39.69 5.68
8703 10921 2.960957 ATCGTCGCCAGAATGAGCCG 62.961 60.000 0.00 0.00 39.69 5.52
8704 10922 0.032130 TATCGTCGCCAGAATGAGCC 59.968 55.000 0.00 0.00 39.69 4.70
8705 10923 1.269309 ACTATCGTCGCCAGAATGAGC 60.269 52.381 0.62 0.00 39.69 4.26
8706 10924 2.389059 CACTATCGTCGCCAGAATGAG 58.611 52.381 0.62 0.00 39.69 2.90
8707 10925 1.067060 CCACTATCGTCGCCAGAATGA 59.933 52.381 0.62 0.00 39.69 2.57
8708 10926 1.202417 ACCACTATCGTCGCCAGAATG 60.202 52.381 0.62 0.00 0.00 2.67
8709 10927 1.067212 GACCACTATCGTCGCCAGAAT 59.933 52.381 0.62 0.00 0.00 2.40
8710 10928 0.454600 GACCACTATCGTCGCCAGAA 59.545 55.000 0.62 0.00 0.00 3.02
8711 10929 1.381928 GGACCACTATCGTCGCCAGA 61.382 60.000 0.62 0.00 0.00 3.86
8712 10930 1.065928 GGACCACTATCGTCGCCAG 59.934 63.158 0.00 0.00 0.00 4.85
8713 10931 0.968901 AAGGACCACTATCGTCGCCA 60.969 55.000 0.00 0.00 0.00 5.69
8714 10932 0.248949 GAAGGACCACTATCGTCGCC 60.249 60.000 0.00 0.00 0.00 5.54
8715 10933 0.591741 CGAAGGACCACTATCGTCGC 60.592 60.000 0.00 0.00 0.00 5.19
8716 10934 1.012086 TCGAAGGACCACTATCGTCG 58.988 55.000 0.00 0.00 36.70 5.12
8717 10935 2.617308 TCATCGAAGGACCACTATCGTC 59.383 50.000 0.00 0.00 36.70 4.20
8718 10936 2.651455 TCATCGAAGGACCACTATCGT 58.349 47.619 0.00 0.00 36.70 3.73
8719 10937 3.504134 AGATCATCGAAGGACCACTATCG 59.496 47.826 0.00 0.00 36.67 2.92
8720 10938 4.520874 TGAGATCATCGAAGGACCACTATC 59.479 45.833 0.00 0.00 0.00 2.08
8721 10939 4.474394 TGAGATCATCGAAGGACCACTAT 58.526 43.478 0.00 0.00 0.00 2.12
8722 10940 3.898482 TGAGATCATCGAAGGACCACTA 58.102 45.455 0.00 0.00 0.00 2.74
8723 10941 2.739943 TGAGATCATCGAAGGACCACT 58.260 47.619 0.00 0.00 0.00 4.00
8724 10942 3.526931 TTGAGATCATCGAAGGACCAC 57.473 47.619 0.00 0.00 0.00 4.16
8725 10943 4.551702 TTTTGAGATCATCGAAGGACCA 57.448 40.909 0.00 0.00 32.71 4.02
8726 10944 6.442513 AAATTTTGAGATCATCGAAGGACC 57.557 37.500 0.00 0.00 32.71 4.46
8727 10945 7.530010 TCAAAATTTTGAGATCATCGAAGGAC 58.470 34.615 26.01 0.00 41.88 3.85
8728 10946 7.686438 TCAAAATTTTGAGATCATCGAAGGA 57.314 32.000 26.01 2.76 41.88 3.36
8753 10971 9.865321 AGCATCTTAGTCGTAATAAAAACTACA 57.135 29.630 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.