Multiple sequence alignment - TraesCS5D01G282200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G282200 chr5D 100.000 5862 0 0 1 5862 383768614 383774475 0.000000e+00 10826.0
1 TraesCS5D01G282200 chr5D 91.765 170 14 0 462 631 90002677 90002508 2.730000e-58 237.0
2 TraesCS5D01G282200 chr5D 91.018 167 14 1 467 633 49890333 49890498 2.130000e-54 224.0
3 TraesCS5D01G282200 chr5D 87.755 49 6 0 5423 5471 461043339 461043387 2.280000e-04 58.4
4 TraesCS5D01G282200 chr5A 94.497 2871 99 20 983 3839 484072081 484074906 0.000000e+00 4372.0
5 TraesCS5D01G282200 chr5A 93.140 1312 50 15 3799 5084 484074902 484076199 0.000000e+00 1888.0
6 TraesCS5D01G282200 chr5A 88.321 411 43 5 1 409 484070886 484071293 6.830000e-134 488.0
7 TraesCS5D01G282200 chr5A 89.547 287 22 6 637 916 484071775 484072060 2.010000e-94 357.0
8 TraesCS5D01G282200 chr5A 89.091 275 29 1 5589 5862 484077145 484077419 2.020000e-89 340.0
9 TraesCS5D01G282200 chr5B 93.627 2887 109 31 1004 3839 460258983 460261845 0.000000e+00 4242.0
10 TraesCS5D01G282200 chr5B 95.165 1241 43 8 3799 5034 460261841 460263069 0.000000e+00 1943.0
11 TraesCS5D01G282200 chr5B 84.262 413 48 13 1 409 460248243 460248642 2.560000e-103 387.0
12 TraesCS5D01G282200 chr5B 97.101 138 3 1 792 929 460258712 460258848 1.270000e-56 231.0
13 TraesCS5D01G282200 chr1A 93.939 165 10 0 467 631 11628172 11628336 3.510000e-62 250.0
14 TraesCS5D01G282200 chr7A 91.228 171 15 0 464 634 183959651 183959481 3.530000e-57 233.0
15 TraesCS5D01G282200 chr7A 77.500 360 77 3 3386 3743 237510611 237510968 4.600000e-51 213.0
16 TraesCS5D01G282200 chr2D 91.176 170 15 0 465 634 134800143 134799974 1.270000e-56 231.0
17 TraesCS5D01G282200 chr4B 92.500 160 12 0 465 624 614281488 614281647 4.570000e-56 230.0
18 TraesCS5D01G282200 chr3B 90.964 166 15 0 467 632 755167396 755167561 2.130000e-54 224.0
19 TraesCS5D01G282200 chr3B 91.667 48 4 0 5646 5693 811700141 811700094 3.790000e-07 67.6
20 TraesCS5D01G282200 chr3B 89.583 48 4 1 5147 5193 24407946 24407899 6.340000e-05 60.2
21 TraesCS5D01G282200 chr4A 90.909 165 15 0 467 631 189614491 189614327 7.650000e-54 222.0
22 TraesCS5D01G282200 chr4A 87.895 190 20 3 445 631 642589387 642589576 2.750000e-53 220.0
23 TraesCS5D01G282200 chr4A 80.000 100 19 1 5249 5348 465331100 465331002 8.150000e-09 73.1
24 TraesCS5D01G282200 chr4A 91.489 47 4 0 5157 5203 703940851 703940805 1.360000e-06 65.8
25 TraesCS5D01G282200 chr2A 87.179 78 9 1 5133 5209 71062582 71062505 2.910000e-13 87.9
26 TraesCS5D01G282200 chr2A 86.250 80 9 2 5123 5201 4991752 4991830 1.050000e-12 86.1
27 TraesCS5D01G282200 chr2B 97.143 35 1 0 4932 4966 680574487 680574453 6.340000e-05 60.2
28 TraesCS5D01G282200 chr6D 94.444 36 2 0 5434 5469 125243795 125243760 8.210000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G282200 chr5D 383768614 383774475 5861 False 10826.000000 10826 100.000000 1 5862 1 chr5D.!!$F2 5861
1 TraesCS5D01G282200 chr5A 484070886 484077419 6533 False 1489.000000 4372 90.919200 1 5862 5 chr5A.!!$F1 5861
2 TraesCS5D01G282200 chr5B 460258712 460263069 4357 False 2138.666667 4242 95.297667 792 5034 3 chr5B.!!$F2 4242

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
239 240 0.105778 GCTCTGGTAGGAGATGCCAC 59.894 60.000 0.0 0.0 39.00 5.01 F
993 1476 0.391263 AGCCGATTCAACCGAGAACC 60.391 55.000 0.0 0.0 0.00 3.62 F
1941 2489 0.729478 CGCGCCTGTATGGAGTATCG 60.729 60.000 0.0 0.0 37.96 2.92 F
2043 2595 1.376649 AGCTGAGAACATTTCCCCCT 58.623 50.000 0.0 0.0 0.00 4.79 F
2044 2596 1.713078 AGCTGAGAACATTTCCCCCTT 59.287 47.619 0.0 0.0 0.00 3.95 F
2045 2597 2.095461 GCTGAGAACATTTCCCCCTTC 58.905 52.381 0.0 0.0 0.00 3.46 F
2046 2598 2.291217 GCTGAGAACATTTCCCCCTTCT 60.291 50.000 0.0 0.0 0.00 2.85 F
2616 3178 2.885135 TGAAGTCTGGTACTCCGGTA 57.115 50.000 0.0 0.0 37.50 4.02 F
4208 4805 1.483827 TCAATTGCTGCCCAAACAACA 59.516 42.857 0.0 0.0 36.92 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 2471 0.596577 TCGATACTCCATACAGGCGC 59.403 55.000 0.00 0.00 37.29 6.53 R
2626 3188 0.687354 AAGGATCAGCACGTCAGGTT 59.313 50.000 0.00 0.00 0.00 3.50 R
3412 3975 2.288886 GGATCCTACGCCTACAACCATC 60.289 54.545 3.84 0.00 0.00 3.51 R
3759 4322 7.679659 AGTTTTAAGTTTTCGCTTCAACATC 57.320 32.000 0.00 0.00 30.33 3.06 R
4081 4678 1.902508 CCTTTACCTGTCAGAGCTCCA 59.097 52.381 10.93 0.00 0.00 3.86 R
4180 4777 1.204467 GGGCAGCAATTGAAATTCCGA 59.796 47.619 10.34 0.00 0.00 4.55 R
4208 4805 0.535102 CTGCCCTCGTGTTCCAAGTT 60.535 55.000 0.00 0.00 0.00 2.66 R
4218 4815 1.003718 GCCTGTTTACTGCCCTCGT 60.004 57.895 0.00 0.00 0.00 4.18 R
5430 6055 0.174845 TAGGGTTTCTCGTCATGCGG 59.825 55.000 9.16 2.07 41.72 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.201429 GGTTCCTGGCAAGAGGAGGA 61.201 60.000 0.00 0.00 43.26 3.71
25 26 0.251634 GTTCCTGGCAAGAGGAGGAG 59.748 60.000 0.00 0.00 43.26 3.69
26 27 0.911525 TTCCTGGCAAGAGGAGGAGG 60.912 60.000 0.00 0.00 43.26 4.30
30 31 0.252881 TGGCAAGAGGAGGAGGACAT 60.253 55.000 0.00 0.00 0.00 3.06
37 38 0.980231 AGGAGGAGGACATGAGGTGC 60.980 60.000 0.00 0.00 38.27 5.01
50 51 1.758440 GAGGTGCCGGCATGATCCTA 61.758 60.000 35.23 2.76 0.00 2.94
51 52 1.130054 AGGTGCCGGCATGATCCTAT 61.130 55.000 35.23 11.17 0.00 2.57
65 66 2.568546 TCCTATGGGATCACACAGGT 57.431 50.000 21.70 0.00 36.57 4.00
91 92 3.758554 ACTATCTTTGCTTTGTGCGGATT 59.241 39.130 0.00 0.00 46.63 3.01
107 108 2.547211 CGGATTCATTCAGAGATGCACC 59.453 50.000 0.00 0.00 0.00 5.01
109 110 3.564644 GGATTCATTCAGAGATGCACCAG 59.435 47.826 0.00 0.00 0.00 4.00
155 156 5.417894 AGCATTGCTAGTAAGGTTTAAACCC 59.582 40.000 29.71 16.93 43.41 4.11
157 158 9.847983 AGCATTGCTAGTAAGGTTTAAACCCGA 62.848 40.741 29.71 17.41 43.41 5.14
190 191 4.866508 AGTCCGAACAAACTCATAGTGA 57.133 40.909 0.00 0.00 0.00 3.41
195 196 5.050634 TCCGAACAAACTCATAGTGAAAACG 60.051 40.000 0.00 0.00 0.00 3.60
203 204 4.393062 ACTCATAGTGAAAACGGATTGCTG 59.607 41.667 0.00 0.00 0.00 4.41
209 210 4.631813 AGTGAAAACGGATTGCTGTAGATC 59.368 41.667 0.00 0.00 32.01 2.75
210 211 4.391830 GTGAAAACGGATTGCTGTAGATCA 59.608 41.667 0.00 0.00 32.01 2.92
214 215 2.236146 ACGGATTGCTGTAGATCACCAA 59.764 45.455 0.00 0.00 0.00 3.67
222 223 2.036475 CTGTAGATCACCAATAGCGGCT 59.964 50.000 7.98 7.98 0.00 5.52
239 240 0.105778 GCTCTGGTAGGAGATGCCAC 59.894 60.000 0.00 0.00 39.00 5.01
251 252 3.821033 GGAGATGCCACACAACTTTTACT 59.179 43.478 0.00 0.00 36.34 2.24
252 253 4.278419 GGAGATGCCACACAACTTTTACTT 59.722 41.667 0.00 0.00 36.34 2.24
274 277 8.408743 ACTTAGTCGTTAGCATGATTTTAGTC 57.591 34.615 0.00 0.00 0.00 2.59
275 278 7.491696 ACTTAGTCGTTAGCATGATTTTAGTCC 59.508 37.037 0.00 0.00 0.00 3.85
279 282 4.025979 CGTTAGCATGATTTTAGTCCGGTC 60.026 45.833 0.00 0.00 0.00 4.79
314 317 9.343539 GGAAAATAAAGTTCCTCATATGCTAGT 57.656 33.333 0.00 0.00 41.25 2.57
327 330 8.948145 CCTCATATGCTAGTCTAGTTATTACGT 58.052 37.037 8.68 0.00 0.00 3.57
347 350 2.543777 TGCTCTTCGCCTAAAACTGT 57.456 45.000 0.00 0.00 38.05 3.55
348 351 2.846193 TGCTCTTCGCCTAAAACTGTT 58.154 42.857 0.00 0.00 38.05 3.16
361 364 5.234116 CCTAAAACTGTTGTTTGGTTGCATC 59.766 40.000 0.00 0.00 44.70 3.91
387 390 4.943705 GTGCCTGATGAGATTGACCTTTTA 59.056 41.667 0.00 0.00 0.00 1.52
388 391 4.943705 TGCCTGATGAGATTGACCTTTTAC 59.056 41.667 0.00 0.00 0.00 2.01
392 395 5.789521 TGATGAGATTGACCTTTTACGTCA 58.210 37.500 0.00 0.00 38.46 4.35
394 397 3.994392 TGAGATTGACCTTTTACGTCAGC 59.006 43.478 0.00 0.00 41.10 4.26
413 853 1.952296 GCAGGATTGTAATGGCTCTGG 59.048 52.381 0.00 0.00 0.00 3.86
420 860 5.827797 GGATTGTAATGGCTCTGGTTGATTA 59.172 40.000 0.00 0.00 0.00 1.75
431 871 7.154656 GGCTCTGGTTGATTAATGAAAGTTTT 58.845 34.615 0.00 0.00 0.00 2.43
439 879 9.650371 GTTGATTAATGAAAGTTTTCCTTTTGC 57.350 29.630 0.00 0.00 43.47 3.68
475 915 9.642343 AAGAAAAACCATTATAATACTCCCTCC 57.358 33.333 0.00 0.00 0.00 4.30
476 916 7.937394 AGAAAAACCATTATAATACTCCCTCCG 59.063 37.037 0.00 0.00 0.00 4.63
477 917 6.758806 AAACCATTATAATACTCCCTCCGT 57.241 37.500 0.00 0.00 0.00 4.69
478 918 6.758806 AACCATTATAATACTCCCTCCGTT 57.241 37.500 0.00 0.00 0.00 4.44
479 919 6.356186 ACCATTATAATACTCCCTCCGTTC 57.644 41.667 0.00 0.00 0.00 3.95
480 920 6.082707 ACCATTATAATACTCCCTCCGTTCT 58.917 40.000 0.00 0.00 0.00 3.01
481 921 6.210984 ACCATTATAATACTCCCTCCGTTCTC 59.789 42.308 0.00 0.00 0.00 2.87
482 922 6.210784 CCATTATAATACTCCCTCCGTTCTCA 59.789 42.308 0.00 0.00 0.00 3.27
483 923 7.256190 CCATTATAATACTCCCTCCGTTCTCAA 60.256 40.741 0.00 0.00 0.00 3.02
484 924 7.664552 TTATAATACTCCCTCCGTTCTCAAA 57.335 36.000 0.00 0.00 0.00 2.69
485 925 6.749036 ATAATACTCCCTCCGTTCTCAAAT 57.251 37.500 0.00 0.00 0.00 2.32
486 926 7.850935 ATAATACTCCCTCCGTTCTCAAATA 57.149 36.000 0.00 0.00 0.00 1.40
487 927 6.749036 AATACTCCCTCCGTTCTCAAATAT 57.251 37.500 0.00 0.00 0.00 1.28
488 928 7.850935 AATACTCCCTCCGTTCTCAAATATA 57.149 36.000 0.00 0.00 0.00 0.86
489 929 7.850935 ATACTCCCTCCGTTCTCAAATATAA 57.149 36.000 0.00 0.00 0.00 0.98
490 930 6.163135 ACTCCCTCCGTTCTCAAATATAAG 57.837 41.667 0.00 0.00 0.00 1.73
491 931 5.661759 ACTCCCTCCGTTCTCAAATATAAGT 59.338 40.000 0.00 0.00 0.00 2.24
492 932 6.837568 ACTCCCTCCGTTCTCAAATATAAGTA 59.162 38.462 0.00 0.00 0.00 2.24
493 933 7.509659 ACTCCCTCCGTTCTCAAATATAAGTAT 59.490 37.037 0.00 0.00 0.00 2.12
494 934 8.258850 TCCCTCCGTTCTCAAATATAAGTATT 57.741 34.615 0.00 0.00 31.89 1.89
495 935 8.711170 TCCCTCCGTTCTCAAATATAAGTATTT 58.289 33.333 0.00 0.00 40.31 1.40
496 936 9.338622 CCCTCCGTTCTCAAATATAAGTATTTT 57.661 33.333 0.00 0.00 38.21 1.82
514 954 8.040716 AGTATTTTTACAGATTTCAACGAGGG 57.959 34.615 0.00 0.00 0.00 4.30
515 955 7.881232 AGTATTTTTACAGATTTCAACGAGGGA 59.119 33.333 0.00 0.00 0.00 4.20
516 956 5.934935 TTTTACAGATTTCAACGAGGGAC 57.065 39.130 0.00 0.00 0.00 4.46
518 958 5.988310 TTACAGATTTCAACGAGGGACTA 57.012 39.130 0.00 0.00 41.55 2.59
519 959 4.189639 ACAGATTTCAACGAGGGACTAC 57.810 45.455 0.00 0.00 41.55 2.73
520 960 3.576982 ACAGATTTCAACGAGGGACTACA 59.423 43.478 0.00 0.00 41.55 2.74
521 961 4.223032 ACAGATTTCAACGAGGGACTACAT 59.777 41.667 0.00 0.00 41.55 2.29
522 962 5.421056 ACAGATTTCAACGAGGGACTACATA 59.579 40.000 0.00 0.00 41.55 2.29
523 963 5.749109 CAGATTTCAACGAGGGACTACATAC 59.251 44.000 0.00 0.00 41.55 2.39
524 964 5.421056 AGATTTCAACGAGGGACTACATACA 59.579 40.000 0.00 0.00 41.55 2.29
525 965 4.713824 TTCAACGAGGGACTACATACAG 57.286 45.455 0.00 0.00 41.55 2.74
526 966 3.959293 TCAACGAGGGACTACATACAGA 58.041 45.455 0.00 0.00 41.55 3.41
527 967 3.945921 TCAACGAGGGACTACATACAGAG 59.054 47.826 0.00 0.00 41.55 3.35
528 968 2.299521 ACGAGGGACTACATACAGAGC 58.700 52.381 0.00 0.00 41.55 4.09
529 969 2.298610 CGAGGGACTACATACAGAGCA 58.701 52.381 0.00 0.00 41.55 4.26
530 970 2.688446 CGAGGGACTACATACAGAGCAA 59.312 50.000 0.00 0.00 41.55 3.91
531 971 3.130516 CGAGGGACTACATACAGAGCAAA 59.869 47.826 0.00 0.00 41.55 3.68
532 972 4.381612 CGAGGGACTACATACAGAGCAAAA 60.382 45.833 0.00 0.00 41.55 2.44
533 973 5.675538 GAGGGACTACATACAGAGCAAAAT 58.324 41.667 0.00 0.00 41.55 1.82
534 974 5.431765 AGGGACTACATACAGAGCAAAATG 58.568 41.667 0.00 0.00 36.02 2.32
535 975 5.189736 AGGGACTACATACAGAGCAAAATGA 59.810 40.000 0.00 0.00 36.02 2.57
536 976 5.525378 GGGACTACATACAGAGCAAAATGAG 59.475 44.000 0.00 0.00 0.00 2.90
537 977 6.109359 GGACTACATACAGAGCAAAATGAGT 58.891 40.000 0.00 0.00 0.00 3.41
538 978 6.036517 GGACTACATACAGAGCAAAATGAGTG 59.963 42.308 0.00 0.00 0.00 3.51
539 979 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
540 980 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
541 981 6.246420 ACATACAGAGCAAAATGAGTGAAC 57.754 37.500 0.00 0.00 0.00 3.18
542 982 5.182001 ACATACAGAGCAAAATGAGTGAACC 59.818 40.000 0.00 0.00 0.00 3.62
543 983 3.825328 ACAGAGCAAAATGAGTGAACCT 58.175 40.909 0.00 0.00 0.00 3.50
544 984 4.973168 ACAGAGCAAAATGAGTGAACCTA 58.027 39.130 0.00 0.00 0.00 3.08
545 985 4.757149 ACAGAGCAAAATGAGTGAACCTAC 59.243 41.667 0.00 0.00 0.00 3.18
546 986 4.756642 CAGAGCAAAATGAGTGAACCTACA 59.243 41.667 0.00 0.00 0.00 2.74
547 987 4.757149 AGAGCAAAATGAGTGAACCTACAC 59.243 41.667 0.00 0.00 40.60 2.90
561 1001 9.036980 AGTGAACCTACACTCTAAAATATGTCT 57.963 33.333 0.00 0.00 46.36 3.41
595 1035 9.328845 TCCGTATATTGTAGTCCATTTAAAACC 57.671 33.333 0.00 0.00 0.00 3.27
596 1036 9.333724 CCGTATATTGTAGTCCATTTAAAACCT 57.666 33.333 0.00 0.00 0.00 3.50
624 1064 8.959705 AAAAGGACTTATATTTAGGAACGGAG 57.040 34.615 0.00 0.00 0.00 4.63
625 1065 7.909485 AAGGACTTATATTTAGGAACGGAGA 57.091 36.000 0.00 0.00 0.00 3.71
626 1066 7.527568 AGGACTTATATTTAGGAACGGAGAG 57.472 40.000 0.00 0.00 0.00 3.20
627 1067 7.296098 AGGACTTATATTTAGGAACGGAGAGA 58.704 38.462 0.00 0.00 0.00 3.10
628 1068 7.449086 AGGACTTATATTTAGGAACGGAGAGAG 59.551 40.741 0.00 0.00 0.00 3.20
629 1069 7.231115 GGACTTATATTTAGGAACGGAGAGAGT 59.769 40.741 0.00 0.00 0.00 3.24
630 1070 9.282569 GACTTATATTTAGGAACGGAGAGAGTA 57.717 37.037 0.00 0.00 0.00 2.59
631 1071 9.065798 ACTTATATTTAGGAACGGAGAGAGTAC 57.934 37.037 0.00 0.00 0.00 2.73
632 1072 8.985315 TTATATTTAGGAACGGAGAGAGTACA 57.015 34.615 0.00 0.00 0.00 2.90
633 1073 9.584008 TTATATTTAGGAACGGAGAGAGTACAT 57.416 33.333 0.00 0.00 0.00 2.29
634 1074 5.831702 TTTAGGAACGGAGAGAGTACATC 57.168 43.478 0.00 0.00 0.00 3.06
635 1075 2.657143 AGGAACGGAGAGAGTACATCC 58.343 52.381 0.00 0.00 0.00 3.51
645 1085 6.440436 GGAGAGAGTACATCCGACTAATTTC 58.560 44.000 0.00 0.00 0.00 2.17
712 1154 7.069950 AGGCAATCCTTAGATTATTTTCCCAAC 59.930 37.037 0.00 0.00 40.89 3.77
732 1174 7.778853 TCCCAACAAACCTAAATACACAGTTTA 59.221 33.333 0.00 0.00 0.00 2.01
780 1225 2.106511 AGTGCAGTTTAAAGAGGCCTGA 59.893 45.455 12.00 0.00 0.00 3.86
787 1232 4.104897 AGTTTAAAGAGGCCTGAGTTCCTT 59.895 41.667 12.00 2.36 31.71 3.36
792 1237 1.743252 GGCCTGAGTTCCTTCAGCG 60.743 63.158 0.00 0.00 42.58 5.18
826 1271 4.705519 CGGCCCAGCAAGCAAACG 62.706 66.667 0.00 0.00 0.00 3.60
916 1363 2.359230 GCTTTCTGCCTCGGTGCT 60.359 61.111 0.00 0.00 35.15 4.40
931 1398 2.266055 GCTTCTCACCGTCCCTGG 59.734 66.667 0.00 0.00 0.00 4.45
957 1424 2.482333 CGCCTCCTCTCGGACGAAT 61.482 63.158 0.00 0.00 34.92 3.34
958 1425 1.817209 GCCTCCTCTCGGACGAATT 59.183 57.895 0.00 0.00 34.92 2.17
959 1426 1.030457 GCCTCCTCTCGGACGAATTA 58.970 55.000 0.00 0.00 34.92 1.40
970 1437 2.265683 GGACGAATTACCCGAAGACAC 58.734 52.381 0.00 0.00 0.00 3.67
971 1438 2.353011 GGACGAATTACCCGAAGACACA 60.353 50.000 0.00 0.00 0.00 3.72
972 1439 2.921754 GACGAATTACCCGAAGACACAG 59.078 50.000 0.00 0.00 0.00 3.66
975 1458 2.386661 ATTACCCGAAGACACAGCAG 57.613 50.000 0.00 0.00 0.00 4.24
993 1476 0.391263 AGCCGATTCAACCGAGAACC 60.391 55.000 0.00 0.00 0.00 3.62
1460 2003 3.209410 CTGGATGTTCCCATCTGCTTAC 58.791 50.000 3.01 0.00 45.66 2.34
1466 2009 1.153168 CCCATCTGCTTACACGGGG 60.153 63.158 0.00 0.00 0.00 5.73
1467 2010 1.819632 CCATCTGCTTACACGGGGC 60.820 63.158 0.00 0.00 0.00 5.80
1468 2011 1.221840 CATCTGCTTACACGGGGCT 59.778 57.895 0.00 0.00 0.00 5.19
1502 2047 4.082523 CCCACTGGACGGATGCGT 62.083 66.667 13.64 13.64 0.00 5.24
1534 2079 2.363359 CGGTTTAGTTAGGGCCGTAGAT 59.637 50.000 5.14 1.30 37.87 1.98
1542 2087 2.962253 GGCCGTAGATGCAGCGAC 60.962 66.667 5.02 5.02 0.00 5.19
1709 2255 3.542712 TTTGCAGATTCGTTTCAGAGC 57.457 42.857 0.00 0.00 0.00 4.09
1711 2257 2.341257 TGCAGATTCGTTTCAGAGCTC 58.659 47.619 5.27 5.27 0.00 4.09
1739 2285 0.819259 CTATCCCACCAATGCACCCG 60.819 60.000 0.00 0.00 0.00 5.28
1873 2421 7.334858 TGTGGATGCATGTTACTATTGTTAGA 58.665 34.615 2.46 0.00 0.00 2.10
1877 2425 6.656314 TGCATGTTACTATTGTTAGAACCG 57.344 37.500 0.00 0.00 0.00 4.44
1923 2471 1.874019 CGAATCCTGTCGGCTGTCG 60.874 63.158 0.00 0.00 37.37 4.35
1941 2489 0.729478 CGCGCCTGTATGGAGTATCG 60.729 60.000 0.00 0.00 37.96 2.92
1965 2517 8.511321 TCGATACAAATTACTGCATGACTTTTT 58.489 29.630 0.00 0.00 0.00 1.94
2021 2573 9.793252 CAACTGGGAAATAATATTCAGAACTTG 57.207 33.333 7.05 0.21 0.00 3.16
2038 2590 6.636044 CAGAACTTGAAAGCTGAGAACATTTC 59.364 38.462 0.00 0.00 33.31 2.17
2041 2593 3.157087 TGAAAGCTGAGAACATTTCCCC 58.843 45.455 0.00 0.00 32.01 4.81
2042 2594 2.222227 AAGCTGAGAACATTTCCCCC 57.778 50.000 0.00 0.00 0.00 5.40
2043 2595 1.376649 AGCTGAGAACATTTCCCCCT 58.623 50.000 0.00 0.00 0.00 4.79
2044 2596 1.713078 AGCTGAGAACATTTCCCCCTT 59.287 47.619 0.00 0.00 0.00 3.95
2045 2597 2.095461 GCTGAGAACATTTCCCCCTTC 58.905 52.381 0.00 0.00 0.00 3.46
2046 2598 2.291217 GCTGAGAACATTTCCCCCTTCT 60.291 50.000 0.00 0.00 0.00 2.85
2047 2599 3.815757 GCTGAGAACATTTCCCCCTTCTT 60.816 47.826 0.00 0.00 0.00 2.52
2048 2600 4.567747 GCTGAGAACATTTCCCCCTTCTTA 60.568 45.833 0.00 0.00 0.00 2.10
2049 2601 4.918588 TGAGAACATTTCCCCCTTCTTAC 58.081 43.478 0.00 0.00 0.00 2.34
2050 2602 4.352595 TGAGAACATTTCCCCCTTCTTACA 59.647 41.667 0.00 0.00 0.00 2.41
2118 2672 2.949177 TGAGCTAGGTTCAAAAGGCA 57.051 45.000 0.00 0.00 0.00 4.75
2119 2673 3.222173 TGAGCTAGGTTCAAAAGGCAA 57.778 42.857 0.00 0.00 0.00 4.52
2138 2692 5.718607 AGGCAAAAGAGAATATGAAAGCCTT 59.281 36.000 0.00 0.00 45.71 4.35
2202 2756 9.944376 TTAGAATGAGTCAACTAGTTTTATGCT 57.056 29.630 5.07 1.11 0.00 3.79
2212 2766 9.871238 TCAACTAGTTTTATGCTCTTAGGTAAG 57.129 33.333 5.07 0.00 34.65 2.34
2236 2790 6.313658 AGTTGAGAAAAGATTTTTGGTTGTGC 59.686 34.615 0.00 0.00 0.00 4.57
2275 2837 5.762711 GGGTTTGAACAAAGGCAAATATTGT 59.237 36.000 0.00 0.00 38.85 2.71
2332 2894 8.542497 TCCGTGGTATAAATTTATGTATCTGC 57.458 34.615 18.98 0.00 0.00 4.26
2386 2948 7.558444 AGTTGTTCCAACTACCAAACTGAAATA 59.442 33.333 7.80 0.00 35.67 1.40
2429 2991 6.287525 TGTGAGTGATTGTCTTGACATGTTA 58.712 36.000 0.00 0.00 0.00 2.41
2430 2992 6.202762 TGTGAGTGATTGTCTTGACATGTTAC 59.797 38.462 0.00 4.42 0.00 2.50
2431 2993 6.425114 GTGAGTGATTGTCTTGACATGTTACT 59.575 38.462 0.00 8.52 0.00 2.24
2572 3134 6.540438 AACCATCTAACCATCTTTACTCGA 57.460 37.500 0.00 0.00 0.00 4.04
2573 3135 6.732896 ACCATCTAACCATCTTTACTCGAT 57.267 37.500 0.00 0.00 0.00 3.59
2616 3178 2.885135 TGAAGTCTGGTACTCCGGTA 57.115 50.000 0.00 0.00 37.50 4.02
2626 3188 7.043565 GTCTGGTACTCCGGTATGATTTTTAA 58.956 38.462 0.00 0.00 40.77 1.52
2797 3359 5.642063 TCGTGTGTTCTCTTTCTTTTCAAGT 59.358 36.000 0.00 0.00 0.00 3.16
2798 3360 6.148811 TCGTGTGTTCTCTTTCTTTTCAAGTT 59.851 34.615 0.00 0.00 0.00 2.66
2799 3361 6.466097 CGTGTGTTCTCTTTCTTTTCAAGTTC 59.534 38.462 0.00 0.00 0.00 3.01
2980 3542 4.000988 GCTACAAAACTACAAGGCTGCTA 58.999 43.478 0.00 0.00 0.00 3.49
3004 3566 4.762251 AGTTGGCTATTGGACTTCAAACTC 59.238 41.667 0.00 0.00 39.05 3.01
3058 3621 4.081198 ACTCTAACTCTCAGCCTCCATTTG 60.081 45.833 0.00 0.00 0.00 2.32
3221 3784 7.950512 TGCCTTTCTGAGATATTTGTGAAAAA 58.049 30.769 0.00 0.00 0.00 1.94
3241 3804 8.981647 TGAAAAATTATTTCAGCTGAGCTTTTC 58.018 29.630 17.43 21.33 36.40 2.29
3273 3836 8.777413 TGAAAGTTGAGAGTTGAAATATGTGAG 58.223 33.333 0.00 0.00 0.00 3.51
3275 3838 9.778741 AAAGTTGAGAGTTGAAATATGTGAGTA 57.221 29.630 0.00 0.00 0.00 2.59
3276 3839 9.950496 AAGTTGAGAGTTGAAATATGTGAGTAT 57.050 29.630 0.00 0.00 0.00 2.12
3277 3840 9.376075 AGTTGAGAGTTGAAATATGTGAGTATG 57.624 33.333 0.00 0.00 0.00 2.39
3278 3841 8.607459 GTTGAGAGTTGAAATATGTGAGTATGG 58.393 37.037 0.00 0.00 0.00 2.74
3412 3975 8.292444 TGGTATTCATTTATTTCAGGACAAGG 57.708 34.615 0.00 0.00 0.00 3.61
3759 4322 5.551760 AAGGTAATTGCTGAACTGATTCG 57.448 39.130 0.00 0.00 37.69 3.34
4081 4678 4.589374 AGCCGTCCTGAGCTACTAATTATT 59.411 41.667 0.00 0.00 37.64 1.40
4180 4777 8.466617 AATCCACTACGAGTCTACATAAGAAT 57.533 34.615 0.00 0.00 35.47 2.40
4208 4805 1.483827 TCAATTGCTGCCCAAACAACA 59.516 42.857 0.00 0.00 36.92 3.33
4218 4815 2.354203 GCCCAAACAACAACTTGGAACA 60.354 45.455 2.39 0.00 44.16 3.18
4225 4822 0.818040 ACAACTTGGAACACGAGGGC 60.818 55.000 0.00 0.00 39.29 5.19
4240 4837 0.392998 AGGGCAGTAAACAGGCATCG 60.393 55.000 1.70 0.00 0.00 3.84
4270 4870 0.242017 GTTGGTTGCATGCAGGTCTC 59.758 55.000 21.50 9.23 0.00 3.36
4324 4924 1.154205 CGAGGAAGCGGCTTATGGTG 61.154 60.000 16.38 1.26 0.00 4.17
4327 4927 1.077716 GAAGCGGCTTATGGTGGGT 60.078 57.895 16.38 0.00 0.00 4.51
4383 4983 0.615331 GCCCTGTCAGAAGTGATCCA 59.385 55.000 0.00 0.00 34.36 3.41
4590 5190 6.189677 TGAGTTACTGAACAAACAAACAGG 57.810 37.500 0.00 0.00 38.10 4.00
4595 5195 3.380320 ACTGAACAAACAAACAGGGCTAC 59.620 43.478 0.00 0.00 35.08 3.58
4811 5428 7.093814 CCATTTTCAGGATGGTTGATTACAGAA 60.094 37.037 0.00 0.00 39.36 3.02
4827 5445 1.098050 AGAATGAAACGAGGGCATGC 58.902 50.000 9.90 9.90 0.00 4.06
4877 5495 2.926200 CTCGTCAGTATTCTGCCTTGTG 59.074 50.000 0.00 0.00 41.10 3.33
4931 5554 3.273080 CTTTTGTCAGCCGGCAGCC 62.273 63.158 31.54 12.09 45.47 4.85
4950 5573 2.050144 CCTAAGGCCTCTCCTAATGCA 58.950 52.381 5.23 0.00 46.94 3.96
5026 5649 5.661312 TGACTAAACTATCCACTGCATAGGT 59.339 40.000 4.67 0.00 0.00 3.08
5042 5666 4.786609 GCATAGGTGCGCTTATCTTGTTTC 60.787 45.833 9.73 0.00 42.28 2.78
5051 5675 8.103924 GTGCGCTTATCTTGTTTCATTTAATTG 58.896 33.333 9.73 0.00 0.00 2.32
5058 5682 7.922505 TCTTGTTTCATTTAATTGGTTGTCG 57.077 32.000 0.00 0.00 0.00 4.35
5084 5709 6.831868 ACTGTAAATTGTGTTTTCCTGTAGGT 59.168 34.615 0.00 0.00 36.34 3.08
5085 5710 7.994334 ACTGTAAATTGTGTTTTCCTGTAGGTA 59.006 33.333 0.00 0.00 36.34 3.08
5086 5711 8.156994 TGTAAATTGTGTTTTCCTGTAGGTAC 57.843 34.615 0.00 0.00 36.34 3.34
5087 5712 7.994334 TGTAAATTGTGTTTTCCTGTAGGTACT 59.006 33.333 0.00 0.00 46.37 2.73
5088 5713 7.506328 AAATTGTGTTTTCCTGTAGGTACTC 57.494 36.000 0.00 0.00 41.75 2.59
5089 5714 5.881923 TTGTGTTTTCCTGTAGGTACTCT 57.118 39.130 0.00 0.00 41.75 3.24
5090 5715 5.464030 TGTGTTTTCCTGTAGGTACTCTC 57.536 43.478 0.00 0.00 41.75 3.20
5091 5716 4.282703 TGTGTTTTCCTGTAGGTACTCTCC 59.717 45.833 0.00 0.00 41.75 3.71
5092 5717 4.527427 GTGTTTTCCTGTAGGTACTCTCCT 59.473 45.833 0.00 0.00 41.75 3.69
5093 5718 5.713861 GTGTTTTCCTGTAGGTACTCTCCTA 59.286 44.000 0.00 0.00 41.75 2.94
5094 5719 6.380560 GTGTTTTCCTGTAGGTACTCTCCTAT 59.619 42.308 0.00 0.00 41.37 2.57
5095 5720 6.958192 TGTTTTCCTGTAGGTACTCTCCTATT 59.042 38.462 0.00 0.00 41.37 1.73
5096 5721 7.093465 TGTTTTCCTGTAGGTACTCTCCTATTG 60.093 40.741 0.00 0.00 41.37 1.90
5097 5722 5.063017 TCCTGTAGGTACTCTCCTATTGG 57.937 47.826 0.00 0.00 41.37 3.16
5098 5723 4.481280 TCCTGTAGGTACTCTCCTATTGGT 59.519 45.833 0.00 0.00 41.37 3.67
5099 5724 4.828387 CCTGTAGGTACTCTCCTATTGGTC 59.172 50.000 0.00 0.00 41.37 4.02
5100 5725 5.446860 CTGTAGGTACTCTCCTATTGGTCA 58.553 45.833 0.00 0.00 41.37 4.02
5101 5726 6.027025 TGTAGGTACTCTCCTATTGGTCAT 57.973 41.667 0.00 0.00 41.37 3.06
5102 5727 6.069331 TGTAGGTACTCTCCTATTGGTCATC 58.931 44.000 0.00 0.00 41.37 2.92
5103 5728 5.144159 AGGTACTCTCCTATTGGTCATCA 57.856 43.478 0.00 0.00 35.87 3.07
5104 5729 5.529289 AGGTACTCTCCTATTGGTCATCAA 58.471 41.667 0.00 0.00 40.01 2.57
5105 5730 5.964477 AGGTACTCTCCTATTGGTCATCAAA 59.036 40.000 0.00 0.00 39.05 2.69
5106 5731 6.049790 GGTACTCTCCTATTGGTCATCAAAC 58.950 44.000 0.00 0.00 39.05 2.93
5107 5732 6.127026 GGTACTCTCCTATTGGTCATCAAACT 60.127 42.308 0.00 0.00 39.05 2.66
5108 5733 6.380079 ACTCTCCTATTGGTCATCAAACTT 57.620 37.500 0.00 0.00 39.05 2.66
5109 5734 6.410540 ACTCTCCTATTGGTCATCAAACTTC 58.589 40.000 0.00 0.00 39.05 3.01
5110 5735 6.214412 ACTCTCCTATTGGTCATCAAACTTCT 59.786 38.462 0.00 0.00 39.05 2.85
5111 5736 6.644347 TCTCCTATTGGTCATCAAACTTCTC 58.356 40.000 0.00 0.00 39.05 2.87
5112 5737 6.441924 TCTCCTATTGGTCATCAAACTTCTCT 59.558 38.462 0.00 0.00 39.05 3.10
5113 5738 6.644347 TCCTATTGGTCATCAAACTTCTCTC 58.356 40.000 0.00 0.00 39.05 3.20
5114 5739 6.441924 TCCTATTGGTCATCAAACTTCTCTCT 59.558 38.462 0.00 0.00 39.05 3.10
5115 5740 7.038017 TCCTATTGGTCATCAAACTTCTCTCTT 60.038 37.037 0.00 0.00 39.05 2.85
5116 5741 8.260818 CCTATTGGTCATCAAACTTCTCTCTTA 58.739 37.037 0.00 0.00 39.05 2.10
5117 5742 9.658799 CTATTGGTCATCAAACTTCTCTCTTAA 57.341 33.333 0.00 0.00 39.05 1.85
5119 5744 8.924511 TTGGTCATCAAACTTCTCTCTTAATT 57.075 30.769 0.00 0.00 31.46 1.40
5121 5746 9.436957 TGGTCATCAAACTTCTCTCTTAATTAC 57.563 33.333 0.00 0.00 0.00 1.89
5122 5747 8.884726 GGTCATCAAACTTCTCTCTTAATTACC 58.115 37.037 0.00 0.00 0.00 2.85
5123 5748 9.660180 GTCATCAAACTTCTCTCTTAATTACCT 57.340 33.333 0.00 0.00 0.00 3.08
5131 5756 9.857957 ACTTCTCTCTTAATTACCTTCTTTACG 57.142 33.333 0.00 0.00 0.00 3.18
5141 5766 8.857694 AATTACCTTCTTTACGAAAAGGATCA 57.142 30.769 7.34 0.00 41.78 2.92
5142 5767 8.857694 ATTACCTTCTTTACGAAAAGGATCAA 57.142 30.769 7.34 0.00 41.78 2.57
5143 5768 8.680039 TTACCTTCTTTACGAAAAGGATCAAA 57.320 30.769 7.34 0.00 41.78 2.69
5144 5769 7.761038 ACCTTCTTTACGAAAAGGATCAAAT 57.239 32.000 7.34 0.00 41.78 2.32
5145 5770 7.593825 ACCTTCTTTACGAAAAGGATCAAATG 58.406 34.615 7.34 0.00 41.78 2.32
5146 5771 7.230712 ACCTTCTTTACGAAAAGGATCAAATGT 59.769 33.333 7.34 0.00 41.78 2.71
5147 5772 8.726988 CCTTCTTTACGAAAAGGATCAAATGTA 58.273 33.333 0.00 0.00 41.78 2.29
5179 5804 2.076863 ACCGCAAGTACAAAGCATCTC 58.923 47.619 0.00 0.00 0.00 2.75
5181 5806 2.483877 CCGCAAGTACAAAGCATCTCAA 59.516 45.455 0.00 0.00 0.00 3.02
5221 5846 6.720012 ATCAAAATTTTAAATGGTCACCGC 57.280 33.333 2.44 0.00 0.00 5.68
5222 5847 5.601662 TCAAAATTTTAAATGGTCACCGCA 58.398 33.333 2.44 0.00 0.00 5.69
5223 5848 6.049149 TCAAAATTTTAAATGGTCACCGCAA 58.951 32.000 2.44 0.00 0.00 4.85
5224 5849 5.915812 AAATTTTAAATGGTCACCGCAAC 57.084 34.783 0.00 0.00 0.00 4.17
5225 5850 4.864704 ATTTTAAATGGTCACCGCAACT 57.135 36.364 0.00 0.00 0.00 3.16
5226 5851 5.968528 ATTTTAAATGGTCACCGCAACTA 57.031 34.783 0.00 0.00 0.00 2.24
5227 5852 4.752661 TTTAAATGGTCACCGCAACTAC 57.247 40.909 0.00 0.00 0.00 2.73
5228 5853 2.264005 AAATGGTCACCGCAACTACA 57.736 45.000 0.00 0.00 0.00 2.74
5229 5854 2.264005 AATGGTCACCGCAACTACAA 57.736 45.000 0.00 0.00 0.00 2.41
5230 5855 2.264005 ATGGTCACCGCAACTACAAA 57.736 45.000 0.00 0.00 0.00 2.83
5231 5856 1.588674 TGGTCACCGCAACTACAAAG 58.411 50.000 0.00 0.00 0.00 2.77
5232 5857 0.237498 GGTCACCGCAACTACAAAGC 59.763 55.000 0.00 0.00 0.00 3.51
5233 5858 0.941542 GTCACCGCAACTACAAAGCA 59.058 50.000 0.00 0.00 0.00 3.91
5234 5859 1.535462 GTCACCGCAACTACAAAGCAT 59.465 47.619 0.00 0.00 0.00 3.79
5235 5860 1.804151 TCACCGCAACTACAAAGCATC 59.196 47.619 0.00 0.00 0.00 3.91
5236 5861 1.806542 CACCGCAACTACAAAGCATCT 59.193 47.619 0.00 0.00 0.00 2.90
5237 5862 2.226437 CACCGCAACTACAAAGCATCTT 59.774 45.455 0.00 0.00 0.00 2.40
5238 5863 3.435327 CACCGCAACTACAAAGCATCTTA 59.565 43.478 0.00 0.00 0.00 2.10
5239 5864 3.684788 ACCGCAACTACAAAGCATCTTAG 59.315 43.478 0.00 0.00 0.00 2.18
5240 5865 3.684788 CCGCAACTACAAAGCATCTTAGT 59.315 43.478 0.00 0.00 0.00 2.24
5241 5866 4.201724 CCGCAACTACAAAGCATCTTAGTC 60.202 45.833 0.00 0.00 0.00 2.59
5242 5867 4.490959 CGCAACTACAAAGCATCTTAGTCG 60.491 45.833 0.00 0.00 0.00 4.18
5243 5868 4.389077 GCAACTACAAAGCATCTTAGTCGT 59.611 41.667 0.00 0.00 0.00 4.34
5244 5869 5.575606 GCAACTACAAAGCATCTTAGTCGTA 59.424 40.000 0.00 0.00 0.00 3.43
5245 5870 6.090358 GCAACTACAAAGCATCTTAGTCGTAA 59.910 38.462 0.00 0.00 0.00 3.18
5246 5871 7.201530 GCAACTACAAAGCATCTTAGTCGTAAT 60.202 37.037 0.00 0.00 0.00 1.89
5247 5872 9.297586 CAACTACAAAGCATCTTAGTCGTAATA 57.702 33.333 0.00 0.00 0.00 0.98
5248 5873 9.865321 AACTACAAAGCATCTTAGTCGTAATAA 57.135 29.630 0.00 0.00 0.00 1.40
5249 5874 9.865321 ACTACAAAGCATCTTAGTCGTAATAAA 57.135 29.630 0.00 0.00 0.00 1.40
5252 5877 9.821662 ACAAAGCATCTTAGTCGTAATAAAAAC 57.178 29.630 0.00 0.00 0.00 2.43
5256 5881 9.865321 AGCATCTTAGTCGTAATAAAAACTACA 57.135 29.630 0.00 0.00 0.00 2.74
5289 5914 4.520874 TGAGATCATCGAAGGACCACTATC 59.479 45.833 0.00 0.00 0.00 2.08
5292 5917 2.617308 TCATCGAAGGACCACTATCGTC 59.383 50.000 0.00 0.00 36.70 4.20
5293 5918 1.012086 TCGAAGGACCACTATCGTCG 58.988 55.000 0.00 0.00 36.70 5.12
5297 5922 1.065928 GGACCACTATCGTCGCCAG 59.934 63.158 0.00 0.00 0.00 4.85
5300 5925 1.067212 GACCACTATCGTCGCCAGAAT 59.933 52.381 0.62 0.00 0.00 2.40
5301 5926 1.202417 ACCACTATCGTCGCCAGAATG 60.202 52.381 0.62 0.00 0.00 2.67
5302 5927 1.067060 CCACTATCGTCGCCAGAATGA 59.933 52.381 0.62 0.00 39.69 2.57
5303 5928 2.389059 CACTATCGTCGCCAGAATGAG 58.611 52.381 0.62 0.00 39.69 2.90
5304 5929 1.269309 ACTATCGTCGCCAGAATGAGC 60.269 52.381 0.62 0.00 39.69 4.26
5305 5930 0.032130 TATCGTCGCCAGAATGAGCC 59.968 55.000 0.00 0.00 39.69 4.70
5306 5931 2.960957 ATCGTCGCCAGAATGAGCCG 62.961 60.000 0.00 0.00 39.69 5.52
5307 5932 2.125512 GTCGCCAGAATGAGCCGT 60.126 61.111 0.00 0.00 39.69 5.68
5308 5933 2.167861 GTCGCCAGAATGAGCCGTC 61.168 63.158 0.00 0.00 39.69 4.79
5309 5934 2.125552 CGCCAGAATGAGCCGTCA 60.126 61.111 0.00 0.00 39.69 4.35
5310 5935 1.741401 CGCCAGAATGAGCCGTCAA 60.741 57.895 0.00 0.00 39.69 3.18
5311 5936 1.796796 GCCAGAATGAGCCGTCAAC 59.203 57.895 0.00 0.00 39.69 3.18
5330 5955 2.108157 TGCCGTTGTTGTCGCTCT 59.892 55.556 0.00 0.00 0.00 4.09
5336 5961 2.596452 CGTTGTTGTCGCTCTCATACT 58.404 47.619 0.00 0.00 0.00 2.12
5337 5962 2.342651 CGTTGTTGTCGCTCTCATACTG 59.657 50.000 0.00 0.00 0.00 2.74
5339 5964 1.204704 TGTTGTCGCTCTCATACTGGG 59.795 52.381 0.00 0.00 0.00 4.45
5343 5968 2.434843 CGCTCTCATACTGGGGCCA 61.435 63.158 4.39 0.00 0.00 5.36
5360 5985 2.086869 GCCAGCTTAGCTTGTCAATGA 58.913 47.619 3.00 0.00 36.40 2.57
5362 5987 3.076621 CCAGCTTAGCTTGTCAATGACA 58.923 45.455 12.63 12.63 41.09 3.58
5363 5988 3.126514 CCAGCTTAGCTTGTCAATGACAG 59.873 47.826 16.10 11.43 43.69 3.51
5364 5989 2.746362 AGCTTAGCTTGTCAATGACAGC 59.254 45.455 21.60 21.60 43.69 4.40
5365 5990 2.159462 GCTTAGCTTGTCAATGACAGCC 60.159 50.000 23.82 16.32 43.69 4.85
5366 5991 3.341823 CTTAGCTTGTCAATGACAGCCT 58.658 45.455 23.82 20.76 43.69 4.58
5367 5992 4.507710 CTTAGCTTGTCAATGACAGCCTA 58.492 43.478 23.82 20.00 43.69 3.93
5368 5993 3.423539 AGCTTGTCAATGACAGCCTAA 57.576 42.857 23.82 8.74 43.69 2.69
5369 5994 3.341823 AGCTTGTCAATGACAGCCTAAG 58.658 45.455 23.82 16.71 43.69 2.18
5370 5995 2.421424 GCTTGTCAATGACAGCCTAAGG 59.579 50.000 16.10 3.94 43.69 2.69
5371 5996 3.869912 GCTTGTCAATGACAGCCTAAGGA 60.870 47.826 16.10 0.00 43.69 3.36
5372 5997 3.334583 TGTCAATGACAGCCTAAGGAC 57.665 47.619 12.63 0.00 37.67 3.85
5373 5998 2.906389 TGTCAATGACAGCCTAAGGACT 59.094 45.455 12.63 0.00 37.67 3.85
5374 5999 4.093743 TGTCAATGACAGCCTAAGGACTA 58.906 43.478 12.63 0.00 37.67 2.59
5375 6000 4.160439 TGTCAATGACAGCCTAAGGACTAG 59.840 45.833 12.63 0.00 37.67 2.57
5376 6001 3.133003 TCAATGACAGCCTAAGGACTAGC 59.867 47.826 0.00 0.00 0.00 3.42
5377 6002 1.103803 TGACAGCCTAAGGACTAGCG 58.896 55.000 0.00 0.00 0.00 4.26
5378 6003 0.249114 GACAGCCTAAGGACTAGCGC 60.249 60.000 0.00 0.00 0.00 5.92
5379 6004 1.068250 CAGCCTAAGGACTAGCGCC 59.932 63.158 2.29 0.00 0.00 6.53
5380 6005 2.134933 AGCCTAAGGACTAGCGCCC 61.135 63.158 2.29 0.00 0.00 6.13
5381 6006 3.139565 CCTAAGGACTAGCGCCCC 58.860 66.667 2.29 0.00 0.00 5.80
5382 6007 1.760875 CCTAAGGACTAGCGCCCCA 60.761 63.158 2.29 0.00 0.00 4.96
5383 6008 1.335132 CCTAAGGACTAGCGCCCCAA 61.335 60.000 2.29 0.00 0.00 4.12
5384 6009 0.539986 CTAAGGACTAGCGCCCCAAA 59.460 55.000 2.29 0.00 0.00 3.28
5385 6010 0.539986 TAAGGACTAGCGCCCCAAAG 59.460 55.000 2.29 0.00 0.00 2.77
5386 6011 2.821679 AAGGACTAGCGCCCCAAAGC 62.822 60.000 2.29 0.00 0.00 3.51
5387 6012 2.824489 GACTAGCGCCCCAAAGCC 60.824 66.667 2.29 0.00 0.00 4.35
5388 6013 4.778143 ACTAGCGCCCCAAAGCCG 62.778 66.667 2.29 0.00 0.00 5.52
5389 6014 4.778143 CTAGCGCCCCAAAGCCGT 62.778 66.667 2.29 0.00 0.00 5.68
5406 6031 0.998226 CGTAGTCGTCGGCGTTGAAA 60.998 55.000 10.18 0.00 39.49 2.69
5412 6037 1.219522 CGTCGGCGTTGAAACCTTCT 61.220 55.000 6.85 0.00 0.00 2.85
5421 6046 5.463724 GGCGTTGAAACCTTCTATAGATCTG 59.536 44.000 5.18 0.00 0.00 2.90
5423 6048 6.757010 GCGTTGAAACCTTCTATAGATCTGAA 59.243 38.462 5.18 0.00 0.00 3.02
5429 6054 9.405587 GAAACCTTCTATAGATCTGAAATCTCG 57.594 37.037 5.18 0.00 0.00 4.04
5430 6055 6.919721 ACCTTCTATAGATCTGAAATCTCGC 58.080 40.000 5.18 0.00 0.00 5.03
5432 6057 5.553290 TCTATAGATCTGAAATCTCGCCG 57.447 43.478 5.18 0.00 0.00 6.46
5437 6062 0.175531 TCTGAAATCTCGCCGCATGA 59.824 50.000 0.00 0.00 0.00 3.07
5456 6081 4.451629 TGACGAGAAACCCTAATCTCAC 57.548 45.455 0.00 0.00 41.73 3.51
5458 6083 2.165845 ACGAGAAACCCTAATCTCACCG 59.834 50.000 0.00 0.00 41.73 4.94
5459 6084 2.552031 GAGAAACCCTAATCTCACCGC 58.448 52.381 0.00 0.00 41.37 5.68
5466 6091 0.830648 CTAATCTCACCGCCCCAAGA 59.169 55.000 0.00 0.00 0.00 3.02
5470 6095 1.376037 CTCACCGCCCCAAGAAGAC 60.376 63.158 0.00 0.00 0.00 3.01
5471 6096 2.111999 CTCACCGCCCCAAGAAGACA 62.112 60.000 0.00 0.00 0.00 3.41
5472 6097 1.228124 CACCGCCCCAAGAAGACAA 60.228 57.895 0.00 0.00 0.00 3.18
5482 6107 5.185828 GCCCCAAGAAGACAACAAAATCTAT 59.814 40.000 0.00 0.00 0.00 1.98
5483 6108 6.377146 GCCCCAAGAAGACAACAAAATCTATA 59.623 38.462 0.00 0.00 0.00 1.31
5485 6110 7.393234 CCCCAAGAAGACAACAAAATCTATACA 59.607 37.037 0.00 0.00 0.00 2.29
5511 6140 2.751166 ACGTCCAGATGAACTCAAGG 57.249 50.000 0.00 0.00 0.00 3.61
5518 6147 3.453717 CCAGATGAACTCAAGGAGGATCA 59.546 47.826 0.00 6.50 36.25 2.92
5523 6152 1.110442 ACTCAAGGAGGATCAGAGCG 58.890 55.000 0.00 0.00 34.67 5.03
5535 6164 1.502231 TCAGAGCGCAGAAGACAAAC 58.498 50.000 11.47 0.00 0.00 2.93
5547 6176 4.034510 CAGAAGACAAACTCAAAGAAGCGT 59.965 41.667 0.00 0.00 0.00 5.07
5550 6179 1.003866 ACAAACTCAAAGAAGCGTCGC 60.004 47.619 9.80 9.80 0.00 5.19
5552 6181 1.557443 AACTCAAAGAAGCGTCGCCG 61.557 55.000 14.86 0.00 37.07 6.46
5559 6188 4.595538 AAGCGTCGCCGTCCACAA 62.596 61.111 14.86 0.00 36.15 3.33
5579 6208 3.121030 CCGAGCGAAGGCACCAAG 61.121 66.667 0.00 0.00 43.41 3.61
5589 6817 4.048470 GCACCAAGACCCCCTCCC 62.048 72.222 0.00 0.00 0.00 4.30
5590 6818 3.339093 CACCAAGACCCCCTCCCC 61.339 72.222 0.00 0.00 0.00 4.81
5625 6861 1.227973 GTGAAGGCATCGGGATCCC 60.228 63.158 22.12 22.12 0.00 3.85
5626 6862 1.384502 TGAAGGCATCGGGATCCCT 60.385 57.895 28.42 8.11 27.69 4.20
5630 6866 1.535202 GGCATCGGGATCCCTCTCT 60.535 63.158 28.42 7.31 0.00 3.10
5641 6877 1.611851 CCCTCTCTCTGCCACCAGT 60.612 63.158 0.00 0.00 40.09 4.00
5644 6880 0.972134 CTCTCTCTGCCACCAGTCAA 59.028 55.000 0.00 0.00 40.09 3.18
5647 6883 1.669115 CTCTGCCACCAGTCAACGG 60.669 63.158 0.00 0.00 40.09 4.44
5667 6903 3.541713 CGGTAGGCAGAGGGGAGC 61.542 72.222 0.00 0.00 0.00 4.70
5674 6910 2.735772 GCAGAGGGGAGCCGAATCA 61.736 63.158 0.00 0.00 0.00 2.57
5676 6912 0.462759 CAGAGGGGAGCCGAATCAAC 60.463 60.000 0.00 0.00 0.00 3.18
5685 6921 3.262936 CGAATCAACGGGCTTGCA 58.737 55.556 0.00 0.00 0.00 4.08
5708 6944 1.003580 TGAAGCCTAGAGTTTGCCCTG 59.996 52.381 0.00 0.00 0.00 4.45
5710 6946 0.615850 AGCCTAGAGTTTGCCCTGAC 59.384 55.000 0.00 0.00 0.00 3.51
5712 6948 0.984230 CCTAGAGTTTGCCCTGACCA 59.016 55.000 0.00 0.00 0.00 4.02
5713 6949 1.339151 CCTAGAGTTTGCCCTGACCAC 60.339 57.143 0.00 0.00 0.00 4.16
5770 7006 3.264450 ACCTACTTTGACAGCCTTAGCAT 59.736 43.478 0.00 0.00 43.56 3.79
5783 7019 2.464865 CTTAGCATCTCCGTCCTTTCG 58.535 52.381 0.00 0.00 0.00 3.46
5817 7053 0.034767 CCTGGTCACATGCCTCACAT 60.035 55.000 0.00 0.00 40.66 3.21
5838 7074 4.368391 CACGCAGAGAGGTGCTTT 57.632 55.556 0.00 0.00 41.62 3.51
5856 7092 2.401583 TTGCGCACACAGGAGAATAT 57.598 45.000 11.12 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.911525 CCTCCTCCTCTTGCCAGGAA 60.912 60.000 0.00 0.00 42.35 3.36
10 11 0.906756 TGTCCTCCTCCTCTTGCCAG 60.907 60.000 0.00 0.00 0.00 4.85
24 25 4.101448 GCCGGCACCTCATGTCCT 62.101 66.667 24.80 0.00 0.00 3.85
25 26 3.704231 ATGCCGGCACCTCATGTCC 62.704 63.158 35.50 0.00 0.00 4.02
26 27 2.124570 ATGCCGGCACCTCATGTC 60.125 61.111 35.50 0.00 0.00 3.06
30 31 2.190313 GATCATGCCGGCACCTCA 59.810 61.111 35.50 16.46 0.00 3.86
37 38 2.376063 TCCCATAGGATCATGCCGG 58.624 57.895 0.00 0.00 37.19 6.13
50 51 0.405198 TTGCACCTGTGTGATCCCAT 59.595 50.000 0.00 0.00 45.76 4.00
51 52 0.537143 GTTGCACCTGTGTGATCCCA 60.537 55.000 0.00 0.00 45.76 4.37
82 83 3.200483 CATCTCTGAATGAATCCGCACA 58.800 45.455 0.00 0.00 0.00 4.57
87 88 3.548770 TGGTGCATCTCTGAATGAATCC 58.451 45.455 0.00 0.00 0.00 3.01
91 92 2.981898 CACTGGTGCATCTCTGAATGA 58.018 47.619 0.00 0.00 0.00 2.57
155 156 1.202973 CGGACTATGAGCAAGCGTCG 61.203 60.000 0.00 0.00 0.00 5.12
157 158 0.530744 TTCGGACTATGAGCAAGCGT 59.469 50.000 0.00 0.00 0.00 5.07
190 191 3.689649 GGTGATCTACAGCAATCCGTTTT 59.310 43.478 0.00 0.00 45.12 2.43
203 204 2.297597 AGAGCCGCTATTGGTGATCTAC 59.702 50.000 0.00 0.00 0.00 2.59
209 210 0.464036 TACCAGAGCCGCTATTGGTG 59.536 55.000 27.55 8.55 43.44 4.17
210 211 0.753262 CTACCAGAGCCGCTATTGGT 59.247 55.000 24.69 24.69 45.42 3.67
214 215 0.478942 TCTCCTACCAGAGCCGCTAT 59.521 55.000 0.00 0.00 33.66 2.97
222 223 1.195115 GTGTGGCATCTCCTACCAGA 58.805 55.000 0.00 0.00 33.12 3.86
239 240 7.169035 TGCTAACGACTAAGTAAAAGTTGTG 57.831 36.000 0.00 0.00 40.06 3.33
251 252 6.474427 CGGACTAAAATCATGCTAACGACTAA 59.526 38.462 0.00 0.00 0.00 2.24
252 253 5.975344 CGGACTAAAATCATGCTAACGACTA 59.025 40.000 0.00 0.00 0.00 2.59
279 282 5.458015 GGAACTTTATTTTCCTCACGGTTG 58.542 41.667 0.00 0.00 39.68 3.77
309 312 6.727215 AGAGCAACGTAATAACTAGACTAGC 58.273 40.000 9.52 0.00 0.00 3.42
327 330 8.283620 AAACAACAGTTTTAGGCGAAGAGCAA 62.284 38.462 0.00 0.00 38.82 3.91
328 331 6.887074 AAACAACAGTTTTAGGCGAAGAGCA 61.887 40.000 0.00 0.00 38.82 4.26
347 350 2.200792 CACACGATGCAACCAAACAA 57.799 45.000 0.00 0.00 0.00 2.83
348 351 3.934521 CACACGATGCAACCAAACA 57.065 47.368 0.00 0.00 0.00 2.83
361 364 1.662629 GTCAATCTCATCAGGCACACG 59.337 52.381 0.00 0.00 0.00 4.49
369 372 5.789521 TGACGTAAAAGGTCAATCTCATCA 58.210 37.500 0.00 0.00 39.68 3.07
387 390 2.632377 CCATTACAATCCTGCTGACGT 58.368 47.619 0.00 0.00 0.00 4.34
388 391 1.331756 GCCATTACAATCCTGCTGACG 59.668 52.381 0.00 0.00 0.00 4.35
392 395 2.422519 CCAGAGCCATTACAATCCTGCT 60.423 50.000 0.00 0.00 0.00 4.24
394 397 3.287867 ACCAGAGCCATTACAATCCTG 57.712 47.619 0.00 0.00 0.00 3.86
449 889 9.642343 GGAGGGAGTATTATAATGGTTTTTCTT 57.358 33.333 8.28 0.00 0.00 2.52
450 890 7.937394 CGGAGGGAGTATTATAATGGTTTTTCT 59.063 37.037 8.28 0.00 0.00 2.52
451 891 7.718314 ACGGAGGGAGTATTATAATGGTTTTTC 59.282 37.037 8.28 0.44 0.00 2.29
452 892 7.580007 ACGGAGGGAGTATTATAATGGTTTTT 58.420 34.615 8.28 0.00 0.00 1.94
454 894 6.758806 ACGGAGGGAGTATTATAATGGTTT 57.241 37.500 8.28 0.00 0.00 3.27
455 895 6.557633 AGAACGGAGGGAGTATTATAATGGTT 59.442 38.462 8.28 0.00 0.00 3.67
456 896 6.082707 AGAACGGAGGGAGTATTATAATGGT 58.917 40.000 8.28 0.00 0.00 3.55
457 897 6.210784 TGAGAACGGAGGGAGTATTATAATGG 59.789 42.308 8.28 0.00 0.00 3.16
458 898 7.228314 TGAGAACGGAGGGAGTATTATAATG 57.772 40.000 8.28 0.00 0.00 1.90
459 899 7.850935 TTGAGAACGGAGGGAGTATTATAAT 57.149 36.000 2.97 2.97 0.00 1.28
460 900 7.664552 TTTGAGAACGGAGGGAGTATTATAA 57.335 36.000 0.00 0.00 0.00 0.98
461 901 7.850935 ATTTGAGAACGGAGGGAGTATTATA 57.149 36.000 0.00 0.00 0.00 0.98
462 902 6.749036 ATTTGAGAACGGAGGGAGTATTAT 57.251 37.500 0.00 0.00 0.00 1.28
463 903 7.850935 ATATTTGAGAACGGAGGGAGTATTA 57.149 36.000 0.00 0.00 0.00 0.98
464 904 6.749036 ATATTTGAGAACGGAGGGAGTATT 57.251 37.500 0.00 0.00 0.00 1.89
465 905 7.509659 ACTTATATTTGAGAACGGAGGGAGTAT 59.490 37.037 0.00 0.00 0.00 2.12
466 906 6.837568 ACTTATATTTGAGAACGGAGGGAGTA 59.162 38.462 0.00 0.00 0.00 2.59
467 907 5.661759 ACTTATATTTGAGAACGGAGGGAGT 59.338 40.000 0.00 0.00 0.00 3.85
468 908 6.163135 ACTTATATTTGAGAACGGAGGGAG 57.837 41.667 0.00 0.00 0.00 4.30
469 909 7.850935 ATACTTATATTTGAGAACGGAGGGA 57.149 36.000 0.00 0.00 0.00 4.20
470 910 8.904099 AAATACTTATATTTGAGAACGGAGGG 57.096 34.615 0.00 0.00 39.16 4.30
488 928 8.512138 CCCTCGTTGAAATCTGTAAAAATACTT 58.488 33.333 0.00 0.00 0.00 2.24
489 929 7.881232 TCCCTCGTTGAAATCTGTAAAAATACT 59.119 33.333 0.00 0.00 0.00 2.12
490 930 7.961283 GTCCCTCGTTGAAATCTGTAAAAATAC 59.039 37.037 0.00 0.00 0.00 1.89
491 931 7.881232 AGTCCCTCGTTGAAATCTGTAAAAATA 59.119 33.333 0.00 0.00 0.00 1.40
492 932 6.715264 AGTCCCTCGTTGAAATCTGTAAAAAT 59.285 34.615 0.00 0.00 0.00 1.82
493 933 6.059484 AGTCCCTCGTTGAAATCTGTAAAAA 58.941 36.000 0.00 0.00 0.00 1.94
494 934 5.617252 AGTCCCTCGTTGAAATCTGTAAAA 58.383 37.500 0.00 0.00 0.00 1.52
495 935 5.223449 AGTCCCTCGTTGAAATCTGTAAA 57.777 39.130 0.00 0.00 0.00 2.01
496 936 4.884668 AGTCCCTCGTTGAAATCTGTAA 57.115 40.909 0.00 0.00 0.00 2.41
497 937 4.768448 TGTAGTCCCTCGTTGAAATCTGTA 59.232 41.667 0.00 0.00 0.00 2.74
498 938 3.576982 TGTAGTCCCTCGTTGAAATCTGT 59.423 43.478 0.00 0.00 0.00 3.41
499 939 4.188247 TGTAGTCCCTCGTTGAAATCTG 57.812 45.455 0.00 0.00 0.00 2.90
500 940 5.421056 TGTATGTAGTCCCTCGTTGAAATCT 59.579 40.000 0.00 0.00 0.00 2.40
501 941 5.657474 TGTATGTAGTCCCTCGTTGAAATC 58.343 41.667 0.00 0.00 0.00 2.17
502 942 5.421056 TCTGTATGTAGTCCCTCGTTGAAAT 59.579 40.000 0.00 0.00 0.00 2.17
503 943 4.768448 TCTGTATGTAGTCCCTCGTTGAAA 59.232 41.667 0.00 0.00 0.00 2.69
504 944 4.338012 TCTGTATGTAGTCCCTCGTTGAA 58.662 43.478 0.00 0.00 0.00 2.69
505 945 3.945921 CTCTGTATGTAGTCCCTCGTTGA 59.054 47.826 0.00 0.00 0.00 3.18
506 946 3.489398 GCTCTGTATGTAGTCCCTCGTTG 60.489 52.174 0.00 0.00 0.00 4.10
507 947 2.688958 GCTCTGTATGTAGTCCCTCGTT 59.311 50.000 0.00 0.00 0.00 3.85
508 948 2.299521 GCTCTGTATGTAGTCCCTCGT 58.700 52.381 0.00 0.00 0.00 4.18
509 949 2.298610 TGCTCTGTATGTAGTCCCTCG 58.701 52.381 0.00 0.00 0.00 4.63
510 950 4.737855 TTTGCTCTGTATGTAGTCCCTC 57.262 45.455 0.00 0.00 0.00 4.30
511 951 5.189736 TCATTTTGCTCTGTATGTAGTCCCT 59.810 40.000 0.00 0.00 0.00 4.20
512 952 5.428253 TCATTTTGCTCTGTATGTAGTCCC 58.572 41.667 0.00 0.00 0.00 4.46
513 953 6.036517 CACTCATTTTGCTCTGTATGTAGTCC 59.963 42.308 0.00 0.00 0.00 3.85
514 954 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
515 955 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
516 956 7.413438 GGTTCACTCATTTTGCTCTGTATGTAG 60.413 40.741 0.00 0.00 0.00 2.74
517 957 6.371548 GGTTCACTCATTTTGCTCTGTATGTA 59.628 38.462 0.00 0.00 0.00 2.29
518 958 5.182001 GGTTCACTCATTTTGCTCTGTATGT 59.818 40.000 0.00 0.00 0.00 2.29
519 959 5.413833 AGGTTCACTCATTTTGCTCTGTATG 59.586 40.000 0.00 0.00 0.00 2.39
520 960 5.564550 AGGTTCACTCATTTTGCTCTGTAT 58.435 37.500 0.00 0.00 0.00 2.29
521 961 4.973168 AGGTTCACTCATTTTGCTCTGTA 58.027 39.130 0.00 0.00 0.00 2.74
522 962 3.825328 AGGTTCACTCATTTTGCTCTGT 58.175 40.909 0.00 0.00 0.00 3.41
523 963 4.756642 TGTAGGTTCACTCATTTTGCTCTG 59.243 41.667 0.00 0.00 0.00 3.35
524 964 4.757149 GTGTAGGTTCACTCATTTTGCTCT 59.243 41.667 0.00 0.00 35.68 4.09
525 965 4.757149 AGTGTAGGTTCACTCATTTTGCTC 59.243 41.667 0.00 0.00 44.07 4.26
526 966 4.718961 AGTGTAGGTTCACTCATTTTGCT 58.281 39.130 0.00 0.00 44.07 3.91
569 1009 9.328845 GGTTTTAAATGGACTACAATATACGGA 57.671 33.333 0.00 0.00 0.00 4.69
570 1010 9.333724 AGGTTTTAAATGGACTACAATATACGG 57.666 33.333 0.00 0.00 0.00 4.02
578 1018 9.292195 CCTTTTAGAGGTTTTAAATGGACTACA 57.708 33.333 0.00 0.00 40.95 2.74
579 1019 9.511272 TCCTTTTAGAGGTTTTAAATGGACTAC 57.489 33.333 7.76 0.00 46.39 2.73
599 1039 8.765517 TCTCCGTTCCTAAATATAAGTCCTTTT 58.234 33.333 0.00 0.00 0.00 2.27
600 1040 8.315220 TCTCCGTTCCTAAATATAAGTCCTTT 57.685 34.615 0.00 0.00 0.00 3.11
601 1041 7.783596 TCTCTCCGTTCCTAAATATAAGTCCTT 59.216 37.037 0.00 0.00 0.00 3.36
602 1042 7.296098 TCTCTCCGTTCCTAAATATAAGTCCT 58.704 38.462 0.00 0.00 0.00 3.85
603 1043 7.231115 ACTCTCTCCGTTCCTAAATATAAGTCC 59.769 40.741 0.00 0.00 0.00 3.85
604 1044 8.168790 ACTCTCTCCGTTCCTAAATATAAGTC 57.831 38.462 0.00 0.00 0.00 3.01
605 1045 9.065798 GTACTCTCTCCGTTCCTAAATATAAGT 57.934 37.037 0.00 0.00 0.00 2.24
606 1046 9.064706 TGTACTCTCTCCGTTCCTAAATATAAG 57.935 37.037 0.00 0.00 0.00 1.73
607 1047 8.985315 TGTACTCTCTCCGTTCCTAAATATAA 57.015 34.615 0.00 0.00 0.00 0.98
608 1048 9.228949 GATGTACTCTCTCCGTTCCTAAATATA 57.771 37.037 0.00 0.00 0.00 0.86
609 1049 7.177041 GGATGTACTCTCTCCGTTCCTAAATAT 59.823 40.741 0.00 0.00 0.00 1.28
610 1050 6.489361 GGATGTACTCTCTCCGTTCCTAAATA 59.511 42.308 0.00 0.00 0.00 1.40
611 1051 5.302313 GGATGTACTCTCTCCGTTCCTAAAT 59.698 44.000 0.00 0.00 0.00 1.40
612 1052 4.643784 GGATGTACTCTCTCCGTTCCTAAA 59.356 45.833 0.00 0.00 0.00 1.85
613 1053 4.205587 GGATGTACTCTCTCCGTTCCTAA 58.794 47.826 0.00 0.00 0.00 2.69
614 1054 3.743584 CGGATGTACTCTCTCCGTTCCTA 60.744 52.174 14.50 0.00 45.30 2.94
615 1055 2.657143 GGATGTACTCTCTCCGTTCCT 58.343 52.381 0.00 0.00 0.00 3.36
616 1056 1.334243 CGGATGTACTCTCTCCGTTCC 59.666 57.143 14.50 0.00 45.30 3.62
617 1057 2.759538 CGGATGTACTCTCTCCGTTC 57.240 55.000 14.50 0.00 45.30 3.95
621 1061 6.394025 AAATTAGTCGGATGTACTCTCTCC 57.606 41.667 0.00 0.00 0.00 3.71
622 1062 6.039493 TGGAAATTAGTCGGATGTACTCTCTC 59.961 42.308 0.00 0.00 0.00 3.20
623 1063 5.892119 TGGAAATTAGTCGGATGTACTCTCT 59.108 40.000 0.00 0.00 0.00 3.10
624 1064 6.039493 TCTGGAAATTAGTCGGATGTACTCTC 59.961 42.308 0.00 0.00 0.00 3.20
625 1065 5.892119 TCTGGAAATTAGTCGGATGTACTCT 59.108 40.000 0.00 0.00 0.00 3.24
626 1066 6.145338 TCTGGAAATTAGTCGGATGTACTC 57.855 41.667 0.00 0.00 0.00 2.59
627 1067 6.070995 TGTTCTGGAAATTAGTCGGATGTACT 60.071 38.462 0.00 0.00 0.00 2.73
628 1068 6.103997 TGTTCTGGAAATTAGTCGGATGTAC 58.896 40.000 0.00 0.00 0.00 2.90
629 1069 6.288941 TGTTCTGGAAATTAGTCGGATGTA 57.711 37.500 0.00 0.00 0.00 2.29
630 1070 5.160607 TGTTCTGGAAATTAGTCGGATGT 57.839 39.130 0.00 0.00 0.00 3.06
631 1071 6.494893 TTTGTTCTGGAAATTAGTCGGATG 57.505 37.500 0.00 0.00 0.00 3.51
632 1072 7.519032 TTTTTGTTCTGGAAATTAGTCGGAT 57.481 32.000 0.00 0.00 0.00 4.18
633 1073 6.945938 TTTTTGTTCTGGAAATTAGTCGGA 57.054 33.333 0.00 0.00 0.00 4.55
691 1132 8.758829 GGTTTGTTGGGAAAATAATCTAAGGAT 58.241 33.333 0.00 0.00 0.00 3.24
755 1197 2.744741 GCCTCTTTAAACTGCACTCCTC 59.255 50.000 0.00 0.00 0.00 3.71
762 1204 2.784347 ACTCAGGCCTCTTTAAACTGC 58.216 47.619 0.00 0.00 0.00 4.40
787 1232 0.608640 GAAAAGGAGAGGACCGCTGA 59.391 55.000 0.96 0.00 34.73 4.26
792 1237 1.448013 CGCCGAAAAGGAGAGGACC 60.448 63.158 0.00 0.00 43.02 4.46
826 1271 2.290287 GGTTTGGGGGTGGCCATTC 61.290 63.158 9.72 4.31 0.00 2.67
916 1363 3.319198 GGCCAGGGACGGTGAGAA 61.319 66.667 0.00 0.00 0.00 2.87
950 1417 2.265683 GTGTCTTCGGGTAATTCGTCC 58.734 52.381 0.00 0.00 0.00 4.79
957 1424 0.320421 GCTGCTGTGTCTTCGGGTAA 60.320 55.000 0.00 0.00 0.00 2.85
958 1425 1.292223 GCTGCTGTGTCTTCGGGTA 59.708 57.895 0.00 0.00 0.00 3.69
959 1426 2.031163 GCTGCTGTGTCTTCGGGT 59.969 61.111 0.00 0.00 0.00 5.28
970 1437 1.699656 CTCGGTTGAATCGGCTGCTG 61.700 60.000 0.95 0.95 0.00 4.41
971 1438 1.448540 CTCGGTTGAATCGGCTGCT 60.449 57.895 0.00 0.00 0.00 4.24
972 1439 1.019278 TTCTCGGTTGAATCGGCTGC 61.019 55.000 0.00 0.00 0.00 5.25
975 1458 0.672401 TGGTTCTCGGTTGAATCGGC 60.672 55.000 0.00 0.00 30.15 5.54
1015 1522 1.713830 GGCGCGGTGTCTGAAATAC 59.286 57.895 8.83 0.00 0.00 1.89
1460 2003 4.776322 TTCGCCATCAGCCCCGTG 62.776 66.667 0.00 0.00 38.78 4.94
1466 2009 2.750888 GGAACCGTTCGCCATCAGC 61.751 63.158 5.19 0.00 38.52 4.26
1467 2010 2.106683 GGGAACCGTTCGCCATCAG 61.107 63.158 15.65 0.00 40.86 2.90
1468 2011 2.046700 GGGAACCGTTCGCCATCA 60.047 61.111 15.65 0.00 40.86 3.07
1502 2047 1.873698 ACTAAACCGAAGCAAGCGAA 58.126 45.000 0.00 0.00 0.00 4.70
1534 2079 1.291184 CGAGATTTGGTGTCGCTGCA 61.291 55.000 0.00 0.00 36.78 4.41
1542 2087 5.853282 GTCAGAATTCAAACGAGATTTGGTG 59.147 40.000 8.44 0.00 46.65 4.17
1709 2255 4.301072 TGGTGGGATAGGAAACAAAGAG 57.699 45.455 0.00 0.00 0.00 2.85
1711 2257 4.381932 GCATTGGTGGGATAGGAAACAAAG 60.382 45.833 0.00 0.00 0.00 2.77
1739 2285 8.616076 CAAATACTGAGATTAGACATGTTTCCC 58.384 37.037 0.00 0.00 0.00 3.97
1775 2321 2.062519 GCACGAGTCAAAGGAAGAGAC 58.937 52.381 0.00 0.00 0.00 3.36
1923 2471 0.596577 TCGATACTCCATACAGGCGC 59.403 55.000 0.00 0.00 37.29 6.53
1941 2489 9.410556 ACAAAAAGTCATGCAGTAATTTGTATC 57.589 29.630 13.16 0.00 37.81 2.24
1965 2517 1.208535 CCGGGCCTACAAATCAGTACA 59.791 52.381 0.84 0.00 0.00 2.90
2021 2573 2.493675 GGGGGAAATGTTCTCAGCTTTC 59.506 50.000 0.00 0.00 0.00 2.62
2038 2590 1.893137 GCAAAAGGTGTAAGAAGGGGG 59.107 52.381 0.00 0.00 0.00 5.40
2041 2593 5.940470 ACTAGATGCAAAAGGTGTAAGAAGG 59.060 40.000 0.00 0.00 0.00 3.46
2042 2594 6.876257 AGACTAGATGCAAAAGGTGTAAGAAG 59.124 38.462 0.00 0.00 0.00 2.85
2043 2595 6.650807 CAGACTAGATGCAAAAGGTGTAAGAA 59.349 38.462 0.00 0.00 0.00 2.52
2044 2596 6.166279 CAGACTAGATGCAAAAGGTGTAAGA 58.834 40.000 0.00 0.00 0.00 2.10
2045 2597 5.934625 ACAGACTAGATGCAAAAGGTGTAAG 59.065 40.000 0.00 0.00 0.00 2.34
2046 2598 5.700832 CACAGACTAGATGCAAAAGGTGTAA 59.299 40.000 0.00 0.00 0.00 2.41
2047 2599 5.237815 CACAGACTAGATGCAAAAGGTGTA 58.762 41.667 0.00 0.00 0.00 2.90
2048 2600 4.067896 CACAGACTAGATGCAAAAGGTGT 58.932 43.478 0.00 0.00 0.00 4.16
2049 2601 3.438087 CCACAGACTAGATGCAAAAGGTG 59.562 47.826 0.00 0.00 0.00 4.00
2050 2602 3.327757 TCCACAGACTAGATGCAAAAGGT 59.672 43.478 0.00 0.00 0.00 3.50
2118 2672 6.374333 TGCGTAAGGCTTTCATATTCTCTTTT 59.626 34.615 4.45 0.00 44.05 2.27
2119 2673 5.880332 TGCGTAAGGCTTTCATATTCTCTTT 59.120 36.000 4.45 0.00 44.05 2.52
2138 2692 7.384439 TGGAAATTTGAAATGATAGTGCGTA 57.616 32.000 0.00 0.00 0.00 4.42
2200 2754 8.554835 AATCTTTTCTCAACTTACCTAAGAGC 57.445 34.615 0.00 0.00 37.08 4.09
2212 2766 6.313658 AGCACAACCAAAAATCTTTTCTCAAC 59.686 34.615 0.00 0.00 0.00 3.18
2236 2790 7.338710 TGTTCAAACCCAGAGAATATTCCTAG 58.661 38.462 11.92 6.70 0.00 3.02
2275 2837 3.123959 GCGCCGAAGAGTAAATGTTGTTA 59.876 43.478 0.00 0.00 0.00 2.41
2288 2850 2.160813 GGAAAATTACAAGCGCCGAAGA 59.839 45.455 2.29 0.00 0.00 2.87
2332 2894 4.799949 GCAAATATTACATGTGCACACCTG 59.200 41.667 24.37 20.06 35.28 4.00
2386 2948 5.569355 TCACAAATCCATGTCCAGTTACAT 58.431 37.500 0.00 0.00 40.75 2.29
2616 3178 5.240623 TCAGCACGTCAGGTTTAAAAATCAT 59.759 36.000 0.00 0.00 0.00 2.45
2626 3188 0.687354 AAGGATCAGCACGTCAGGTT 59.313 50.000 0.00 0.00 0.00 3.50
2893 3455 7.595819 AAGGTTGTTCCATGTTATCTTTGAA 57.404 32.000 0.00 0.00 39.02 2.69
2980 3542 5.140454 AGTTTGAAGTCCAATAGCCAACTT 58.860 37.500 0.00 0.00 34.23 2.66
3004 3566 8.961092 CAGTGAGAAATTGTGTAGAAAAACATG 58.039 33.333 0.00 0.00 0.00 3.21
3221 3784 4.702131 ACCGAAAAGCTCAGCTGAAATAAT 59.298 37.500 18.85 4.25 39.62 1.28
3241 3804 3.621268 TCAACTCTCAACTTTCAACACCG 59.379 43.478 0.00 0.00 0.00 4.94
3275 3838 7.654520 GCATTCAACTTCAACATATAATGCCAT 59.345 33.333 0.00 0.00 41.13 4.40
3276 3839 6.979817 GCATTCAACTTCAACATATAATGCCA 59.020 34.615 0.00 0.00 41.13 4.92
3277 3840 7.205297 AGCATTCAACTTCAACATATAATGCC 58.795 34.615 11.78 0.00 45.59 4.40
3278 3841 9.734620 TTAGCATTCAACTTCAACATATAATGC 57.265 29.630 0.00 0.00 45.08 3.56
3412 3975 2.288886 GGATCCTACGCCTACAACCATC 60.289 54.545 3.84 0.00 0.00 3.51
3759 4322 7.679659 AGTTTTAAGTTTTCGCTTCAACATC 57.320 32.000 0.00 0.00 30.33 3.06
4081 4678 1.902508 CCTTTACCTGTCAGAGCTCCA 59.097 52.381 10.93 0.00 0.00 3.86
4180 4777 1.204467 GGGCAGCAATTGAAATTCCGA 59.796 47.619 10.34 0.00 0.00 4.55
4208 4805 0.535102 CTGCCCTCGTGTTCCAAGTT 60.535 55.000 0.00 0.00 0.00 2.66
4218 4815 1.003718 GCCTGTTTACTGCCCTCGT 60.004 57.895 0.00 0.00 0.00 4.18
4225 4822 3.492421 AAATGCGATGCCTGTTTACTG 57.508 42.857 0.00 0.00 0.00 2.74
4240 4837 2.559440 TGCAACCAACAAGGAAAATGC 58.441 42.857 0.00 0.00 41.22 3.56
4270 4870 3.250323 CTGATCGTGCTCGCCGTG 61.250 66.667 2.69 0.00 36.96 4.94
4516 5116 1.675552 TCATCATCGTCGGCTAGTCA 58.324 50.000 0.00 0.00 0.00 3.41
4564 5164 6.482835 TGTTTGTTTGTTCAGTAACTCATCG 58.517 36.000 0.00 0.00 36.51 3.84
4595 5195 1.635844 TATTCTACCACAGCAACGCG 58.364 50.000 3.53 3.53 0.00 6.01
4811 5428 1.098050 GAAGCATGCCCTCGTTTCAT 58.902 50.000 15.66 0.00 0.00 2.57
4827 5445 2.746362 GGAGAAATGGAGCACACAGAAG 59.254 50.000 0.00 0.00 0.00 2.85
4877 5495 0.946221 CTGACGGCTCACACCAGAAC 60.946 60.000 0.00 0.00 0.00 3.01
4950 5573 5.367937 ACCACAATCTGATCTAAGCACCTAT 59.632 40.000 0.00 0.00 0.00 2.57
5002 5625 5.661312 ACCTATGCAGTGGATAGTTTAGTCA 59.339 40.000 24.83 0.00 0.00 3.41
5026 5649 7.275341 CCAATTAAATGAAACAAGATAAGCGCA 59.725 33.333 11.47 0.00 0.00 6.09
5033 5656 8.356657 TCGACAACCAATTAAATGAAACAAGAT 58.643 29.630 0.00 0.00 0.00 2.40
5042 5666 8.964420 ATTTACAGTCGACAACCAATTAAATG 57.036 30.769 19.50 4.91 0.00 2.32
5051 5675 4.806342 ACACAATTTACAGTCGACAACC 57.194 40.909 19.50 0.00 0.00 3.77
5058 5682 7.012989 ACCTACAGGAAAACACAATTTACAGTC 59.987 37.037 1.29 0.00 38.94 3.51
5084 5709 7.400339 AGAAGTTTGATGACCAATAGGAGAGTA 59.600 37.037 0.00 0.00 38.69 2.59
5085 5710 6.214412 AGAAGTTTGATGACCAATAGGAGAGT 59.786 38.462 0.00 0.00 38.69 3.24
5086 5711 6.648192 AGAAGTTTGATGACCAATAGGAGAG 58.352 40.000 0.00 0.00 38.69 3.20
5087 5712 6.441924 AGAGAAGTTTGATGACCAATAGGAGA 59.558 38.462 0.00 0.00 38.69 3.71
5088 5713 6.648192 AGAGAAGTTTGATGACCAATAGGAG 58.352 40.000 0.00 0.00 38.69 3.69
5089 5714 6.441924 AGAGAGAAGTTTGATGACCAATAGGA 59.558 38.462 0.00 0.00 38.69 2.94
5090 5715 6.648192 AGAGAGAAGTTTGATGACCAATAGG 58.352 40.000 0.00 0.00 42.21 2.57
5091 5716 9.658799 TTAAGAGAGAAGTTTGATGACCAATAG 57.341 33.333 0.00 0.00 34.23 1.73
5093 5718 9.525826 AATTAAGAGAGAAGTTTGATGACCAAT 57.474 29.630 0.00 0.00 34.23 3.16
5094 5719 8.924511 AATTAAGAGAGAAGTTTGATGACCAA 57.075 30.769 0.00 0.00 0.00 3.67
5095 5720 9.436957 GTAATTAAGAGAGAAGTTTGATGACCA 57.563 33.333 0.00 0.00 0.00 4.02
5096 5721 8.884726 GGTAATTAAGAGAGAAGTTTGATGACC 58.115 37.037 0.00 0.00 0.00 4.02
5097 5722 9.660180 AGGTAATTAAGAGAGAAGTTTGATGAC 57.340 33.333 0.00 0.00 0.00 3.06
5105 5730 9.857957 CGTAAAGAAGGTAATTAAGAGAGAAGT 57.142 33.333 0.00 0.00 0.00 3.01
5115 5740 9.947433 TGATCCTTTTCGTAAAGAAGGTAATTA 57.053 29.630 15.27 0.00 42.78 1.40
5116 5741 8.857694 TGATCCTTTTCGTAAAGAAGGTAATT 57.142 30.769 15.27 0.00 42.78 1.40
5117 5742 8.857694 TTGATCCTTTTCGTAAAGAAGGTAAT 57.142 30.769 15.27 0.72 42.78 1.89
5118 5743 8.680039 TTTGATCCTTTTCGTAAAGAAGGTAA 57.320 30.769 15.27 2.69 42.78 2.85
5119 5744 8.726988 CATTTGATCCTTTTCGTAAAGAAGGTA 58.273 33.333 15.27 0.00 42.78 3.08
5120 5745 7.230712 ACATTTGATCCTTTTCGTAAAGAAGGT 59.769 33.333 15.27 6.71 42.78 3.50
5121 5746 7.593825 ACATTTGATCCTTTTCGTAAAGAAGG 58.406 34.615 15.27 6.16 42.78 3.46
5136 5761 9.878599 CGGTGAACTTTATAATACATTTGATCC 57.121 33.333 0.00 0.00 0.00 3.36
5137 5762 9.382244 GCGGTGAACTTTATAATACATTTGATC 57.618 33.333 0.00 0.00 0.00 2.92
5138 5763 8.898761 TGCGGTGAACTTTATAATACATTTGAT 58.101 29.630 0.00 0.00 0.00 2.57
5139 5764 8.270080 TGCGGTGAACTTTATAATACATTTGA 57.730 30.769 0.00 0.00 0.00 2.69
5140 5765 8.903570 TTGCGGTGAACTTTATAATACATTTG 57.096 30.769 0.00 0.00 0.00 2.32
5141 5766 8.736244 ACTTGCGGTGAACTTTATAATACATTT 58.264 29.630 0.00 0.00 0.00 2.32
5142 5767 8.276252 ACTTGCGGTGAACTTTATAATACATT 57.724 30.769 0.00 0.00 0.00 2.71
5143 5768 7.859325 ACTTGCGGTGAACTTTATAATACAT 57.141 32.000 0.00 0.00 0.00 2.29
5144 5769 7.818446 TGTACTTGCGGTGAACTTTATAATACA 59.182 33.333 0.00 0.00 0.00 2.29
5145 5770 8.188531 TGTACTTGCGGTGAACTTTATAATAC 57.811 34.615 0.00 0.00 0.00 1.89
5146 5771 8.774890 TTGTACTTGCGGTGAACTTTATAATA 57.225 30.769 0.00 0.00 0.00 0.98
5147 5772 7.675962 TTGTACTTGCGGTGAACTTTATAAT 57.324 32.000 0.00 0.00 0.00 1.28
5148 5773 7.493743 TTTGTACTTGCGGTGAACTTTATAA 57.506 32.000 0.00 0.00 0.00 0.98
5149 5774 6.347888 GCTTTGTACTTGCGGTGAACTTTATA 60.348 38.462 0.00 0.00 0.00 0.98
5150 5775 5.562113 GCTTTGTACTTGCGGTGAACTTTAT 60.562 40.000 0.00 0.00 0.00 1.40
5151 5776 4.260866 GCTTTGTACTTGCGGTGAACTTTA 60.261 41.667 0.00 0.00 0.00 1.85
5152 5777 3.488553 GCTTTGTACTTGCGGTGAACTTT 60.489 43.478 0.00 0.00 0.00 2.66
5153 5778 2.032924 GCTTTGTACTTGCGGTGAACTT 59.967 45.455 0.00 0.00 0.00 2.66
5161 5786 3.811722 TTGAGATGCTTTGTACTTGCG 57.188 42.857 0.00 0.00 0.00 4.85
5199 5824 5.601662 TGCGGTGACCATTTAAAATTTTGA 58.398 33.333 13.76 2.14 0.00 2.69
5201 5826 6.052360 AGTTGCGGTGACCATTTAAAATTTT 58.948 32.000 8.75 8.75 0.00 1.82
5202 5827 5.606505 AGTTGCGGTGACCATTTAAAATTT 58.393 33.333 1.11 0.00 0.00 1.82
5203 5828 5.208463 AGTTGCGGTGACCATTTAAAATT 57.792 34.783 1.11 0.00 0.00 1.82
5204 5829 4.864704 AGTTGCGGTGACCATTTAAAAT 57.135 36.364 1.11 0.00 0.00 1.82
5205 5830 4.579340 TGTAGTTGCGGTGACCATTTAAAA 59.421 37.500 1.11 0.00 0.00 1.52
5206 5831 4.135306 TGTAGTTGCGGTGACCATTTAAA 58.865 39.130 1.11 0.00 0.00 1.52
5207 5832 3.741249 TGTAGTTGCGGTGACCATTTAA 58.259 40.909 1.11 0.00 0.00 1.52
5208 5833 3.404224 TGTAGTTGCGGTGACCATTTA 57.596 42.857 1.11 0.00 0.00 1.40
5209 5834 2.264005 TGTAGTTGCGGTGACCATTT 57.736 45.000 1.11 0.00 0.00 2.32
5210 5835 2.264005 TTGTAGTTGCGGTGACCATT 57.736 45.000 1.11 0.00 0.00 3.16
5211 5836 2.151202 CTTTGTAGTTGCGGTGACCAT 58.849 47.619 1.11 0.00 0.00 3.55
5212 5837 1.588674 CTTTGTAGTTGCGGTGACCA 58.411 50.000 1.11 0.00 0.00 4.02
5213 5838 0.237498 GCTTTGTAGTTGCGGTGACC 59.763 55.000 0.00 0.00 0.00 4.02
5214 5839 0.941542 TGCTTTGTAGTTGCGGTGAC 59.058 50.000 0.00 0.00 0.00 3.67
5215 5840 1.804151 GATGCTTTGTAGTTGCGGTGA 59.196 47.619 0.00 0.00 0.00 4.02
5216 5841 1.806542 AGATGCTTTGTAGTTGCGGTG 59.193 47.619 0.00 0.00 0.00 4.94
5217 5842 2.185004 AGATGCTTTGTAGTTGCGGT 57.815 45.000 0.00 0.00 0.00 5.68
5218 5843 3.684788 ACTAAGATGCTTTGTAGTTGCGG 59.315 43.478 0.00 0.00 0.00 5.69
5219 5844 4.490959 CGACTAAGATGCTTTGTAGTTGCG 60.491 45.833 0.00 0.00 0.00 4.85
5220 5845 4.389077 ACGACTAAGATGCTTTGTAGTTGC 59.611 41.667 0.00 0.00 33.10 4.17
5221 5846 7.576750 TTACGACTAAGATGCTTTGTAGTTG 57.423 36.000 11.09 4.38 35.11 3.16
5222 5847 9.865321 TTATTACGACTAAGATGCTTTGTAGTT 57.135 29.630 11.09 0.98 0.00 2.24
5223 5848 9.865321 TTTATTACGACTAAGATGCTTTGTAGT 57.135 29.630 10.77 10.77 0.00 2.73
5226 5851 9.821662 GTTTTTATTACGACTAAGATGCTTTGT 57.178 29.630 0.00 0.00 0.00 2.83
5230 5855 9.865321 TGTAGTTTTTATTACGACTAAGATGCT 57.135 29.630 0.00 0.00 0.00 3.79
5250 5875 9.778993 CGATGATCTCAAAATTTTGATGTAGTT 57.221 29.630 28.86 14.98 45.26 2.24
5251 5876 9.166173 TCGATGATCTCAAAATTTTGATGTAGT 57.834 29.630 28.86 17.28 45.26 2.73
5252 5877 9.992910 TTCGATGATCTCAAAATTTTGATGTAG 57.007 29.630 28.86 19.07 45.26 2.74
5253 5878 9.992910 CTTCGATGATCTCAAAATTTTGATGTA 57.007 29.630 28.86 19.20 45.26 2.29
5254 5879 7.972277 CCTTCGATGATCTCAAAATTTTGATGT 59.028 33.333 28.86 21.15 45.26 3.06
5255 5880 8.186163 TCCTTCGATGATCTCAAAATTTTGATG 58.814 33.333 28.86 22.31 45.26 3.07
5256 5881 8.186821 GTCCTTCGATGATCTCAAAATTTTGAT 58.813 33.333 28.86 18.12 45.26 2.57
5257 5882 7.362056 GGTCCTTCGATGATCTCAAAATTTTGA 60.362 37.037 27.39 27.39 44.31 2.69
5258 5883 6.749118 GGTCCTTCGATGATCTCAAAATTTTG 59.251 38.462 22.40 22.40 39.48 2.44
5259 5884 6.434028 TGGTCCTTCGATGATCTCAAAATTTT 59.566 34.615 0.00 0.00 0.00 1.82
5263 5888 4.020218 AGTGGTCCTTCGATGATCTCAAAA 60.020 41.667 0.00 0.00 0.00 2.44
5293 5918 1.796796 GTTGACGGCTCATTCTGGC 59.203 57.895 0.00 0.00 0.00 4.85
5297 5922 1.132640 GCACGTTGACGGCTCATTC 59.867 57.895 8.52 0.00 44.95 2.67
5322 5947 1.676678 GCCCCAGTATGAGAGCGACA 61.677 60.000 0.00 0.00 39.69 4.35
5330 5955 1.131638 CTAAGCTGGCCCCAGTATGA 58.868 55.000 15.28 0.00 45.24 2.15
5336 5961 2.356278 CAAGCTAAGCTGGCCCCA 59.644 61.111 0.00 0.00 39.62 4.96
5337 5962 1.750780 GACAAGCTAAGCTGGCCCC 60.751 63.158 0.00 0.00 39.62 5.80
5339 5964 1.133790 CATTGACAAGCTAAGCTGGCC 59.866 52.381 0.00 0.00 39.62 5.36
5343 5968 2.746362 GCTGTCATTGACAAGCTAAGCT 59.254 45.455 19.44 0.00 42.26 3.74
5360 5985 1.677637 GGCGCTAGTCCTTAGGCTGT 61.678 60.000 7.64 0.00 0.00 4.40
5362 5987 2.134933 GGGCGCTAGTCCTTAGGCT 61.135 63.158 7.64 0.00 39.58 4.58
5363 5988 2.422165 GGGCGCTAGTCCTTAGGC 59.578 66.667 7.64 0.00 39.58 3.93
5364 5989 1.335132 TTGGGGCGCTAGTCCTTAGG 61.335 60.000 7.64 0.00 43.12 2.69
5365 5990 0.539986 TTTGGGGCGCTAGTCCTTAG 59.460 55.000 7.64 0.00 43.12 2.18
5366 5991 0.539986 CTTTGGGGCGCTAGTCCTTA 59.460 55.000 7.64 0.00 43.12 2.69
5367 5992 1.299976 CTTTGGGGCGCTAGTCCTT 59.700 57.895 7.64 0.00 43.12 3.36
5368 5993 2.990479 CTTTGGGGCGCTAGTCCT 59.010 61.111 7.64 0.00 43.12 3.85
5369 5994 2.824489 GCTTTGGGGCGCTAGTCC 60.824 66.667 7.64 0.00 42.75 3.85
5370 5995 2.824489 GGCTTTGGGGCGCTAGTC 60.824 66.667 7.64 0.00 0.00 2.59
5377 6002 2.818274 CGACTACGGCTTTGGGGC 60.818 66.667 0.00 0.00 35.72 5.80
5378 6003 1.447314 GACGACTACGGCTTTGGGG 60.447 63.158 0.00 0.00 45.04 4.96
5379 6004 1.804326 CGACGACTACGGCTTTGGG 60.804 63.158 0.00 0.00 46.46 4.12
5380 6005 1.804326 CCGACGACTACGGCTTTGG 60.804 63.158 0.00 0.00 46.46 3.28
5381 6006 3.763319 CCGACGACTACGGCTTTG 58.237 61.111 0.00 0.00 46.46 2.77
5387 6012 0.998226 TTTCAACGCCGACGACTACG 60.998 55.000 0.00 0.00 43.93 3.51
5388 6013 0.432361 GTTTCAACGCCGACGACTAC 59.568 55.000 0.00 0.00 43.93 2.73
5389 6014 0.664166 GGTTTCAACGCCGACGACTA 60.664 55.000 0.00 0.00 43.93 2.59
5398 6023 6.273825 TCAGATCTATAGAAGGTTTCAACGC 58.726 40.000 6.52 0.00 0.00 4.84
5406 6031 6.071616 GGCGAGATTTCAGATCTATAGAAGGT 60.072 42.308 6.52 0.00 0.00 3.50
5412 6037 3.506067 TGCGGCGAGATTTCAGATCTATA 59.494 43.478 12.98 0.00 0.00 1.31
5421 6046 1.145759 TCGTCATGCGGCGAGATTTC 61.146 55.000 12.98 0.00 41.72 2.17
5423 6048 2.494445 TCGTCATGCGGCGAGATT 59.506 55.556 12.98 0.00 41.72 2.40
5429 6054 2.750888 GGGTTTCTCGTCATGCGGC 61.751 63.158 9.16 0.00 41.72 6.53
5430 6055 0.174845 TAGGGTTTCTCGTCATGCGG 59.825 55.000 9.16 2.07 41.72 5.69
5432 6057 3.798202 AGATTAGGGTTTCTCGTCATGC 58.202 45.455 0.00 0.00 0.00 4.06
5437 6062 2.165845 CGGTGAGATTAGGGTTTCTCGT 59.834 50.000 0.00 0.00 41.04 4.18
5451 6076 1.535444 TCTTCTTGGGGCGGTGAGA 60.535 57.895 0.00 0.00 0.00 3.27
5456 6081 0.821711 TTGTTGTCTTCTTGGGGCGG 60.822 55.000 0.00 0.00 0.00 6.13
5458 6083 3.321968 AGATTTTGTTGTCTTCTTGGGGC 59.678 43.478 0.00 0.00 0.00 5.80
5459 6084 6.840780 ATAGATTTTGTTGTCTTCTTGGGG 57.159 37.500 0.00 0.00 0.00 4.96
5472 6097 9.607988 TGGACGTAATCAATGTATAGATTTTGT 57.392 29.630 0.00 0.00 36.07 2.83
5482 6107 6.873997 AGTTCATCTGGACGTAATCAATGTA 58.126 36.000 0.00 0.00 0.00 2.29
5483 6108 5.734720 AGTTCATCTGGACGTAATCAATGT 58.265 37.500 0.00 0.00 0.00 2.71
5485 6110 5.977635 TGAGTTCATCTGGACGTAATCAAT 58.022 37.500 0.00 0.00 0.00 2.57
5487 6112 5.400066 TTGAGTTCATCTGGACGTAATCA 57.600 39.130 0.00 0.00 0.00 2.57
5490 6115 3.830178 TCCTTGAGTTCATCTGGACGTAA 59.170 43.478 0.00 0.00 0.00 3.18
5493 6118 2.417924 CCTCCTTGAGTTCATCTGGACG 60.418 54.545 0.00 0.00 31.28 4.79
5501 6130 2.499289 GCTCTGATCCTCCTTGAGTTCA 59.501 50.000 0.00 0.00 0.00 3.18
5511 6140 0.743688 TCTTCTGCGCTCTGATCCTC 59.256 55.000 9.73 0.00 0.00 3.71
5518 6147 1.069204 TGAGTTTGTCTTCTGCGCTCT 59.931 47.619 9.73 0.00 0.00 4.09
5523 6152 4.286101 GCTTCTTTGAGTTTGTCTTCTGC 58.714 43.478 0.00 0.00 0.00 4.26
5565 6194 2.032681 GGTCTTGGTGCCTTCGCT 59.967 61.111 0.00 0.00 35.36 4.93
5566 6195 3.056328 GGGTCTTGGTGCCTTCGC 61.056 66.667 0.00 0.00 0.00 4.70
5568 6197 2.035783 GGGGGTCTTGGTGCCTTC 59.964 66.667 0.00 0.00 0.00 3.46
5569 6198 2.452491 AGGGGGTCTTGGTGCCTT 60.452 61.111 0.00 0.00 0.00 4.35
5570 6199 2.936032 GAGGGGGTCTTGGTGCCT 60.936 66.667 0.00 0.00 0.00 4.75
5571 6200 4.048470 GGAGGGGGTCTTGGTGCC 62.048 72.222 0.00 0.00 0.00 5.01
5573 6202 3.339093 GGGGAGGGGGTCTTGGTG 61.339 72.222 0.00 0.00 0.00 4.17
5617 6853 2.206536 GGCAGAGAGAGGGATCCCG 61.207 68.421 25.48 10.15 41.95 5.14
5625 6861 0.972134 TTGACTGGTGGCAGAGAGAG 59.028 55.000 0.00 0.00 0.00 3.20
5626 6862 0.681733 GTTGACTGGTGGCAGAGAGA 59.318 55.000 0.00 0.00 0.00 3.10
5630 6866 2.099652 CTCCGTTGACTGGTGGCAGA 62.100 60.000 0.00 0.00 0.00 4.26
5641 6877 2.992689 TGCCTACCGCTCCGTTGA 60.993 61.111 0.00 0.00 38.78 3.18
5644 6880 3.141488 CTCTGCCTACCGCTCCGT 61.141 66.667 0.00 0.00 38.78 4.69
5647 6883 3.541713 CCCCTCTGCCTACCGCTC 61.542 72.222 0.00 0.00 38.78 5.03
5668 6904 0.454957 CTTGCAAGCCCGTTGATTCG 60.455 55.000 14.65 0.00 38.60 3.34
5674 6910 2.032981 CTTCACTTGCAAGCCCGTT 58.967 52.632 26.27 3.26 0.00 4.44
5676 6912 2.256461 GCTTCACTTGCAAGCCCG 59.744 61.111 26.27 14.81 40.45 6.13
5684 6920 2.485814 GGCAAACTCTAGGCTTCACTTG 59.514 50.000 0.00 0.00 0.00 3.16
5685 6921 2.553247 GGGCAAACTCTAGGCTTCACTT 60.553 50.000 0.00 0.00 0.00 3.16
5708 6944 0.340908 TCCCCTAACCCTAGGTGGTC 59.659 60.000 8.29 0.00 43.08 4.02
5710 6946 0.400093 CCTCCCCTAACCCTAGGTGG 60.400 65.000 8.29 4.32 43.08 4.61
5712 6948 1.411741 TTCCTCCCCTAACCCTAGGT 58.588 55.000 8.29 0.00 43.08 3.08
5713 6949 2.508716 GTTTTCCTCCCCTAACCCTAGG 59.491 54.545 0.06 0.06 44.10 3.02
5838 7074 1.206849 TCATATTCTCCTGTGTGCGCA 59.793 47.619 5.66 5.66 0.00 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.