Multiple sequence alignment - TraesCS5D01G281700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G281700 chr5D 100.000 6082 0 0 1 6082 383227551 383233632 0.000000e+00 11232.0
1 TraesCS5D01G281700 chr5D 97.459 1810 22 8 3344 5149 382508094 382509883 0.000000e+00 3066.0
2 TraesCS5D01G281700 chr5D 95.745 1786 42 13 388 2165 382505004 382506763 0.000000e+00 2846.0
3 TraesCS5D01G281700 chr5D 98.147 1187 13 2 2163 3348 382506795 382507973 0.000000e+00 2061.0
4 TraesCS5D01G281700 chr5D 93.991 932 39 8 5153 6080 382517166 382518084 0.000000e+00 1395.0
5 TraesCS5D01G281700 chr5D 78.402 463 90 8 22 478 424316527 424316985 5.960000e-75 292.0
6 TraesCS5D01G281700 chr5D 77.560 459 66 18 33 468 565183249 565183693 6.090000e-60 243.0
7 TraesCS5D01G281700 chr5D 97.059 68 2 0 5149 5216 382517098 382517165 1.390000e-21 115.0
8 TraesCS5D01G281700 chr5B 94.399 1714 82 9 460 2165 458932391 458934098 0.000000e+00 2621.0
9 TraesCS5D01G281700 chr5B 94.842 1648 50 8 4461 6082 458936026 458937664 0.000000e+00 2540.0
10 TraesCS5D01G281700 chr5B 94.860 1070 32 6 3368 4434 458934980 458936029 0.000000e+00 1650.0
11 TraesCS5D01G281700 chr5B 98.565 418 6 0 2414 2831 458934572 458934989 0.000000e+00 739.0
12 TraesCS5D01G281700 chr5B 93.802 242 4 5 2163 2401 458934130 458934363 2.700000e-93 353.0
13 TraesCS5D01G281700 chr5B 89.831 177 14 4 5592 5765 491231071 491230896 2.210000e-54 224.0
14 TraesCS5D01G281700 chr5B 82.946 129 11 3 3590 3718 446561087 446560970 8.340000e-19 106.0
15 TraesCS5D01G281700 chr4D 77.594 424 88 7 33 453 306847950 306848369 3.640000e-62 250.0
16 TraesCS5D01G281700 chr4D 76.946 334 50 15 168 478 417812547 417812876 1.360000e-36 165.0
17 TraesCS5D01G281700 chr4D 80.000 155 23 3 5767 5914 547576 547423 2.320000e-19 108.0
18 TraesCS5D01G281700 chr1D 77.241 435 84 13 32 461 485435229 485435653 2.190000e-59 241.0
19 TraesCS5D01G281700 chr1D 76.342 503 86 22 5 482 9868124 9867630 7.880000e-59 239.0
20 TraesCS5D01G281700 chr1D 76.152 499 90 21 4 479 311755291 311755783 1.020000e-57 235.0
21 TraesCS5D01G281700 chr1D 83.444 151 17 5 331 478 221084069 221084214 3.820000e-27 134.0
22 TraesCS5D01G281700 chr4B 90.909 176 14 2 5592 5765 660566797 660566622 1.020000e-57 235.0
23 TraesCS5D01G281700 chr4B 89.444 180 15 4 5589 5765 476363571 476363749 2.210000e-54 224.0
24 TraesCS5D01G281700 chr4B 77.088 419 70 18 32 431 382773130 382773541 1.030000e-52 219.0
25 TraesCS5D01G281700 chr4B 74.747 495 93 13 7 479 601746524 601746040 6.220000e-45 193.0
26 TraesCS5D01G281700 chr4B 80.435 138 21 1 5776 5907 33626017 33626154 3.880000e-17 100.0
27 TraesCS5D01G281700 chr4B 78.472 144 25 1 5776 5913 658319396 658319253 8.400000e-14 89.8
28 TraesCS5D01G281700 chr3A 90.395 177 13 4 5592 5765 604548466 604548291 4.740000e-56 230.0
29 TraesCS5D01G281700 chr3A 80.714 280 45 6 7 284 171541201 171541473 6.180000e-50 209.0
30 TraesCS5D01G281700 chr3A 81.295 139 18 5 5776 5907 488110630 488110493 8.340000e-19 106.0
31 TraesCS5D01G281700 chr7B 76.160 474 88 16 18 471 641363080 641362612 6.130000e-55 226.0
32 TraesCS5D01G281700 chr7B 89.444 180 15 4 5589 5765 528020933 528021111 2.210000e-54 224.0
33 TraesCS5D01G281700 chr2A 89.444 180 15 4 5589 5765 121288878 121289056 2.210000e-54 224.0
34 TraesCS5D01G281700 chr2A 89.831 177 14 4 5592 5765 556285900 556285725 2.210000e-54 224.0
35 TraesCS5D01G281700 chr2A 79.577 142 21 3 5776 5910 723117751 723117891 1.800000e-15 95.3
36 TraesCS5D01G281700 chr7A 75.778 450 99 8 17 457 280020088 280020536 1.030000e-52 219.0
37 TraesCS5D01G281700 chr6D 79.167 312 64 1 18 328 9974637 9974326 1.330000e-51 215.0
38 TraesCS5D01G281700 chr3B 75.714 490 84 23 8 474 650808937 650808460 4.780000e-51 213.0
39 TraesCS5D01G281700 chr1A 75.468 481 89 16 17 474 285955710 285956184 2.220000e-49 207.0
40 TraesCS5D01G281700 chr1A 77.241 145 26 4 5776 5914 145130788 145130645 1.820000e-10 78.7
41 TraesCS5D01G281700 chr3D 75.798 376 61 14 130 479 580128145 580128516 4.880000e-36 163.0
42 TraesCS5D01G281700 chr2D 86.441 118 16 0 361 478 402310866 402310983 4.950000e-26 130.0
43 TraesCS5D01G281700 chr2D 80.292 137 21 1 5776 5906 344949873 344949737 1.400000e-16 99.0
44 TraesCS5D01G281700 chr1B 79.720 143 20 4 5776 5911 600919775 600919635 1.800000e-15 95.3
45 TraesCS5D01G281700 chr5A 82.569 109 13 1 5776 5878 598665433 598665541 2.330000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G281700 chr5D 383227551 383233632 6081 False 11232.000000 11232 100.0000 1 6082 1 chr5D.!!$F1 6081
1 TraesCS5D01G281700 chr5D 382505004 382509883 4879 False 2657.666667 3066 97.1170 388 5149 3 chr5D.!!$F4 4761
2 TraesCS5D01G281700 chr5D 382517098 382518084 986 False 755.000000 1395 95.5250 5149 6080 2 chr5D.!!$F5 931
3 TraesCS5D01G281700 chr5B 458932391 458937664 5273 False 1580.600000 2621 95.2936 460 6082 5 chr5B.!!$F1 5622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.100682 CGGGCTTCGATTCTTCTCGA 59.899 55.000 0.00 0.0 45.32 4.04 F
270 271 0.179062 GGGGCGACTACGACTCTAGA 60.179 60.000 0.00 0.0 45.75 2.43 F
1680 1686 0.466189 ATCGGCTGCGGAAATCCAAT 60.466 50.000 13.99 0.0 35.14 3.16 F
1754 1761 1.277273 TCTGTGCCTTCTCATGACTGG 59.723 52.381 0.00 0.0 0.00 4.00 F
2288 2333 3.384168 TGCATGTCCATCCTTACCTACT 58.616 45.455 0.00 0.0 0.00 2.57 F
3588 3960 1.147824 CTGGTAGCTGCATCCCCTG 59.852 63.158 3.61 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1737 1743 0.035630 AGCCAGTCATGAGAAGGCAC 60.036 55.000 26.03 3.51 45.05 5.01 R
1754 1761 0.831711 ACCCCCACCACAAAATGAGC 60.832 55.000 0.00 0.00 0.00 4.26 R
3263 3507 0.256752 TGCTCCCATGGAAGATGGTG 59.743 55.000 15.22 0.00 37.48 4.17 R
3588 3960 1.618343 ACCAACATAAACCAGCCTTGC 59.382 47.619 0.00 0.00 0.00 4.01 R
4005 4378 2.128771 ACCAAACAACACAGACTGCT 57.871 45.000 1.25 0.00 0.00 4.24 R
5569 6008 1.430228 GCATGTGATGATGCGTGCA 59.570 52.632 0.00 0.00 44.44 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.424227 CGATCTGGTTAGTAGTCTAGGTTAG 57.576 44.000 0.00 0.00 0.00 2.34
25 26 6.427547 CGATCTGGTTAGTAGTCTAGGTTAGG 59.572 46.154 0.00 0.00 0.00 2.69
26 27 6.898171 TCTGGTTAGTAGTCTAGGTTAGGA 57.102 41.667 0.00 0.00 0.00 2.94
27 28 7.463054 TCTGGTTAGTAGTCTAGGTTAGGAT 57.537 40.000 0.00 0.00 0.00 3.24
28 29 8.572884 TCTGGTTAGTAGTCTAGGTTAGGATA 57.427 38.462 0.00 0.00 0.00 2.59
29 30 9.180282 TCTGGTTAGTAGTCTAGGTTAGGATAT 57.820 37.037 0.00 0.00 0.00 1.63
30 31 9.810870 CTGGTTAGTAGTCTAGGTTAGGATATT 57.189 37.037 0.00 0.00 0.00 1.28
52 53 3.746045 TTTCTTAGTTCTCGCAGGTGT 57.254 42.857 0.00 0.00 0.00 4.16
53 54 2.724977 TCTTAGTTCTCGCAGGTGTG 57.275 50.000 0.00 0.00 0.00 3.82
54 55 1.272490 TCTTAGTTCTCGCAGGTGTGG 59.728 52.381 0.00 0.00 0.00 4.17
55 56 0.320421 TTAGTTCTCGCAGGTGTGGC 60.320 55.000 0.00 0.00 0.00 5.01
73 74 3.880846 GCTCGGCGGATGGCAAAG 61.881 66.667 7.21 0.00 46.16 2.77
74 75 3.880846 CTCGGCGGATGGCAAAGC 61.881 66.667 7.21 0.00 46.16 3.51
75 76 4.408821 TCGGCGGATGGCAAAGCT 62.409 61.111 7.21 0.00 46.16 3.74
76 77 3.443045 CGGCGGATGGCAAAGCTT 61.443 61.111 0.00 0.00 46.16 3.74
77 78 2.491621 GGCGGATGGCAAAGCTTC 59.508 61.111 0.00 0.00 46.16 3.86
78 79 2.048603 GGCGGATGGCAAAGCTTCT 61.049 57.895 0.00 0.00 46.16 2.85
79 80 1.431036 GCGGATGGCAAAGCTTCTC 59.569 57.895 0.00 0.00 42.87 2.87
80 81 1.997928 GCGGATGGCAAAGCTTCTCC 61.998 60.000 0.00 4.60 42.87 3.71
81 82 0.393537 CGGATGGCAAAGCTTCTCCT 60.394 55.000 15.37 4.36 0.00 3.69
82 83 1.844687 GGATGGCAAAGCTTCTCCTT 58.155 50.000 15.37 10.50 0.00 3.36
83 84 2.174360 GGATGGCAAAGCTTCTCCTTT 58.826 47.619 15.37 5.86 35.52 3.11
92 93 5.506686 AAAGCTTCTCCTTTGACTTTGTC 57.493 39.130 0.00 0.00 33.97 3.18
93 94 4.429854 AGCTTCTCCTTTGACTTTGTCT 57.570 40.909 0.00 0.00 33.15 3.41
94 95 4.786425 AGCTTCTCCTTTGACTTTGTCTT 58.214 39.130 0.00 0.00 33.15 3.01
95 96 4.819088 AGCTTCTCCTTTGACTTTGTCTTC 59.181 41.667 0.00 0.00 33.15 2.87
96 97 4.023622 GCTTCTCCTTTGACTTTGTCTTCC 60.024 45.833 0.00 0.00 33.15 3.46
97 98 3.728845 TCTCCTTTGACTTTGTCTTCCG 58.271 45.455 0.00 0.00 33.15 4.30
98 99 2.808543 CTCCTTTGACTTTGTCTTCCGG 59.191 50.000 0.00 0.00 33.15 5.14
99 100 1.880027 CCTTTGACTTTGTCTTCCGGG 59.120 52.381 0.00 0.00 33.15 5.73
100 101 1.266989 CTTTGACTTTGTCTTCCGGGC 59.733 52.381 0.00 0.00 33.15 6.13
101 102 0.472471 TTGACTTTGTCTTCCGGGCT 59.528 50.000 0.00 0.00 33.15 5.19
102 103 0.472471 TGACTTTGTCTTCCGGGCTT 59.528 50.000 0.00 0.00 33.15 4.35
103 104 1.157585 GACTTTGTCTTCCGGGCTTC 58.842 55.000 0.00 0.00 0.00 3.86
104 105 0.602905 ACTTTGTCTTCCGGGCTTCG 60.603 55.000 0.00 0.00 38.88 3.79
105 106 0.320421 CTTTGTCTTCCGGGCTTCGA 60.320 55.000 0.00 0.00 42.43 3.71
106 107 0.323629 TTTGTCTTCCGGGCTTCGAT 59.676 50.000 0.00 0.00 42.43 3.59
107 108 0.323629 TTGTCTTCCGGGCTTCGATT 59.676 50.000 0.00 0.00 42.43 3.34
108 109 0.108329 TGTCTTCCGGGCTTCGATTC 60.108 55.000 0.00 0.00 42.43 2.52
109 110 0.175989 GTCTTCCGGGCTTCGATTCT 59.824 55.000 0.00 0.00 42.43 2.40
110 111 0.902531 TCTTCCGGGCTTCGATTCTT 59.097 50.000 0.00 0.00 42.43 2.52
111 112 1.134788 TCTTCCGGGCTTCGATTCTTC 60.135 52.381 0.00 0.00 42.43 2.87
112 113 0.902531 TTCCGGGCTTCGATTCTTCT 59.097 50.000 0.00 0.00 42.43 2.85
113 114 0.460311 TCCGGGCTTCGATTCTTCTC 59.540 55.000 0.00 0.00 42.43 2.87
114 115 0.872021 CCGGGCTTCGATTCTTCTCG 60.872 60.000 0.00 0.00 42.43 4.04
115 116 0.100682 CGGGCTTCGATTCTTCTCGA 59.899 55.000 0.00 0.00 45.32 4.04
122 123 3.386613 TCGATTCTTCTCGAGTTCGTC 57.613 47.619 13.13 5.11 42.38 4.20
123 124 2.740447 TCGATTCTTCTCGAGTTCGTCA 59.260 45.455 13.13 0.00 42.38 4.35
124 125 3.095016 CGATTCTTCTCGAGTTCGTCAG 58.905 50.000 13.13 0.79 41.12 3.51
125 126 3.425094 CGATTCTTCTCGAGTTCGTCAGT 60.425 47.826 13.13 0.00 41.12 3.41
126 127 3.539431 TTCTTCTCGAGTTCGTCAGTC 57.461 47.619 13.13 0.00 40.80 3.51
127 128 2.768698 TCTTCTCGAGTTCGTCAGTCT 58.231 47.619 13.13 0.00 40.80 3.24
128 129 2.480802 TCTTCTCGAGTTCGTCAGTCTG 59.519 50.000 13.13 0.00 40.80 3.51
129 130 1.157585 TCTCGAGTTCGTCAGTCTGG 58.842 55.000 13.13 0.00 40.80 3.86
130 131 1.157585 CTCGAGTTCGTCAGTCTGGA 58.842 55.000 3.62 0.00 40.80 3.86
131 132 0.873054 TCGAGTTCGTCAGTCTGGAC 59.127 55.000 0.00 0.00 40.80 4.02
160 161 2.633199 GGAGCTCCGACGTATATTCC 57.367 55.000 19.06 0.00 0.00 3.01
161 162 2.161030 GGAGCTCCGACGTATATTCCT 58.839 52.381 19.06 0.00 0.00 3.36
162 163 2.095161 GGAGCTCCGACGTATATTCCTG 60.095 54.545 19.06 0.00 0.00 3.86
163 164 1.269998 AGCTCCGACGTATATTCCTGC 59.730 52.381 0.00 0.00 0.00 4.85
164 165 1.669211 GCTCCGACGTATATTCCTGCC 60.669 57.143 0.00 0.00 0.00 4.85
165 166 1.611977 CTCCGACGTATATTCCTGCCA 59.388 52.381 0.00 0.00 0.00 4.92
166 167 2.231478 CTCCGACGTATATTCCTGCCAT 59.769 50.000 0.00 0.00 0.00 4.40
167 168 2.230508 TCCGACGTATATTCCTGCCATC 59.769 50.000 0.00 0.00 0.00 3.51
168 169 2.231478 CCGACGTATATTCCTGCCATCT 59.769 50.000 0.00 0.00 0.00 2.90
169 170 3.502920 CGACGTATATTCCTGCCATCTC 58.497 50.000 0.00 0.00 0.00 2.75
170 171 3.191581 CGACGTATATTCCTGCCATCTCT 59.808 47.826 0.00 0.00 0.00 3.10
171 172 4.321304 CGACGTATATTCCTGCCATCTCTT 60.321 45.833 0.00 0.00 0.00 2.85
172 173 5.542779 GACGTATATTCCTGCCATCTCTTT 58.457 41.667 0.00 0.00 0.00 2.52
173 174 5.300752 ACGTATATTCCTGCCATCTCTTTG 58.699 41.667 0.00 0.00 0.00 2.77
174 175 4.692625 CGTATATTCCTGCCATCTCTTTGG 59.307 45.833 0.00 0.00 39.94 3.28
175 176 2.449137 ATTCCTGCCATCTCTTTGGG 57.551 50.000 0.00 0.00 37.24 4.12
176 177 0.332632 TTCCTGCCATCTCTTTGGGG 59.667 55.000 0.00 0.00 37.24 4.96
177 178 1.755783 CCTGCCATCTCTTTGGGGC 60.756 63.158 0.00 0.00 46.58 5.80
179 180 2.830370 GCCATCTCTTTGGGGCGG 60.830 66.667 0.00 0.00 37.24 6.13
180 181 2.677228 CCATCTCTTTGGGGCGGT 59.323 61.111 0.00 0.00 32.80 5.68
181 182 1.750399 CCATCTCTTTGGGGCGGTG 60.750 63.158 0.00 0.00 32.80 4.94
182 183 1.299648 CATCTCTTTGGGGCGGTGA 59.700 57.895 0.00 0.00 0.00 4.02
183 184 0.745845 CATCTCTTTGGGGCGGTGAG 60.746 60.000 0.00 0.00 0.00 3.51
184 185 1.915078 ATCTCTTTGGGGCGGTGAGG 61.915 60.000 0.00 0.00 0.00 3.86
185 186 2.852075 TCTTTGGGGCGGTGAGGT 60.852 61.111 0.00 0.00 0.00 3.85
186 187 2.115266 CTTTGGGGCGGTGAGGTT 59.885 61.111 0.00 0.00 0.00 3.50
187 188 1.128809 TCTTTGGGGCGGTGAGGTTA 61.129 55.000 0.00 0.00 0.00 2.85
188 189 0.676782 CTTTGGGGCGGTGAGGTTAG 60.677 60.000 0.00 0.00 0.00 2.34
189 190 2.757980 TTTGGGGCGGTGAGGTTAGC 62.758 60.000 0.00 0.00 0.00 3.09
190 191 4.832608 GGGGCGGTGAGGTTAGCG 62.833 72.222 0.00 0.00 43.78 4.26
191 192 4.078516 GGGCGGTGAGGTTAGCGT 62.079 66.667 0.00 0.00 42.96 5.07
192 193 2.047560 GGCGGTGAGGTTAGCGTT 60.048 61.111 0.00 0.00 42.96 4.84
193 194 1.670083 GGCGGTGAGGTTAGCGTTT 60.670 57.895 0.00 0.00 42.96 3.60
194 195 1.632948 GGCGGTGAGGTTAGCGTTTC 61.633 60.000 0.00 0.00 42.96 2.78
195 196 0.669625 GCGGTGAGGTTAGCGTTTCT 60.670 55.000 0.00 0.00 42.96 2.52
196 197 1.347320 CGGTGAGGTTAGCGTTTCTC 58.653 55.000 0.00 0.00 36.85 2.87
197 198 1.347320 GGTGAGGTTAGCGTTTCTCG 58.653 55.000 0.00 0.00 43.12 4.04
198 199 1.336609 GGTGAGGTTAGCGTTTCTCGT 60.337 52.381 0.00 0.00 42.13 4.18
199 200 1.984297 GTGAGGTTAGCGTTTCTCGTC 59.016 52.381 0.00 0.00 42.13 4.20
200 201 1.610038 TGAGGTTAGCGTTTCTCGTCA 59.390 47.619 0.00 0.00 42.13 4.35
201 202 2.230508 TGAGGTTAGCGTTTCTCGTCAT 59.769 45.455 0.00 0.00 42.13 3.06
202 203 2.599082 GAGGTTAGCGTTTCTCGTCATG 59.401 50.000 0.00 0.00 42.13 3.07
203 204 2.029290 AGGTTAGCGTTTCTCGTCATGT 60.029 45.455 0.00 0.00 42.13 3.21
204 205 2.092211 GGTTAGCGTTTCTCGTCATGTG 59.908 50.000 0.00 0.00 42.13 3.21
205 206 1.990799 TAGCGTTTCTCGTCATGTGG 58.009 50.000 0.00 0.00 42.13 4.17
206 207 1.132640 GCGTTTCTCGTCATGTGGC 59.867 57.895 0.00 0.00 42.13 5.01
207 208 1.416049 CGTTTCTCGTCATGTGGCG 59.584 57.895 0.00 0.00 45.75 5.69
216 217 1.453155 GTCATGTGGCGAGATTTGGT 58.547 50.000 0.00 0.00 0.00 3.67
217 218 1.131126 GTCATGTGGCGAGATTTGGTG 59.869 52.381 0.00 0.00 0.00 4.17
218 219 1.167851 CATGTGGCGAGATTTGGTGT 58.832 50.000 0.00 0.00 0.00 4.16
219 220 1.541147 CATGTGGCGAGATTTGGTGTT 59.459 47.619 0.00 0.00 0.00 3.32
220 221 2.552599 TGTGGCGAGATTTGGTGTTA 57.447 45.000 0.00 0.00 0.00 2.41
221 222 2.422597 TGTGGCGAGATTTGGTGTTAG 58.577 47.619 0.00 0.00 0.00 2.34
222 223 1.737793 GTGGCGAGATTTGGTGTTAGG 59.262 52.381 0.00 0.00 0.00 2.69
223 224 1.349688 TGGCGAGATTTGGTGTTAGGT 59.650 47.619 0.00 0.00 0.00 3.08
224 225 2.568062 TGGCGAGATTTGGTGTTAGGTA 59.432 45.455 0.00 0.00 0.00 3.08
225 226 2.934553 GGCGAGATTTGGTGTTAGGTAC 59.065 50.000 0.00 0.00 0.00 3.34
226 227 3.369157 GGCGAGATTTGGTGTTAGGTACT 60.369 47.826 0.00 0.00 46.37 2.73
227 228 4.251268 GCGAGATTTGGTGTTAGGTACTT 58.749 43.478 0.00 0.00 41.75 2.24
228 229 4.329256 GCGAGATTTGGTGTTAGGTACTTC 59.671 45.833 0.00 0.00 41.75 3.01
229 230 5.475719 CGAGATTTGGTGTTAGGTACTTCA 58.524 41.667 0.00 0.00 41.75 3.02
230 231 5.347907 CGAGATTTGGTGTTAGGTACTTCAC 59.652 44.000 0.00 0.00 41.75 3.18
231 232 6.182507 AGATTTGGTGTTAGGTACTTCACA 57.817 37.500 0.00 0.00 41.31 3.58
232 233 6.779860 AGATTTGGTGTTAGGTACTTCACAT 58.220 36.000 0.00 0.00 41.31 3.21
233 234 6.879458 AGATTTGGTGTTAGGTACTTCACATC 59.121 38.462 0.00 0.00 41.31 3.06
234 235 5.818678 TTGGTGTTAGGTACTTCACATCT 57.181 39.130 4.45 0.00 41.31 2.90
235 236 6.921486 TTGGTGTTAGGTACTTCACATCTA 57.079 37.500 4.45 0.00 41.31 1.98
236 237 7.490657 TTGGTGTTAGGTACTTCACATCTAT 57.509 36.000 4.45 0.00 41.31 1.98
237 238 6.873997 TGGTGTTAGGTACTTCACATCTATG 58.126 40.000 4.45 0.00 41.31 2.23
238 239 5.753921 GGTGTTAGGTACTTCACATCTATGC 59.246 44.000 0.00 0.00 41.31 3.14
239 240 6.338146 GTGTTAGGTACTTCACATCTATGCA 58.662 40.000 0.00 0.00 41.75 3.96
240 241 6.816640 GTGTTAGGTACTTCACATCTATGCAA 59.183 38.462 0.00 0.00 41.75 4.08
241 242 7.010552 GTGTTAGGTACTTCACATCTATGCAAG 59.989 40.741 0.00 0.00 41.75 4.01
242 243 5.939764 AGGTACTTCACATCTATGCAAGA 57.060 39.130 0.00 0.00 33.98 3.02
243 244 5.911752 AGGTACTTCACATCTATGCAAGAG 58.088 41.667 0.00 0.00 32.91 2.85
244 245 5.423610 AGGTACTTCACATCTATGCAAGAGT 59.576 40.000 0.00 3.11 32.91 3.24
245 246 6.070538 AGGTACTTCACATCTATGCAAGAGTT 60.071 38.462 0.00 0.00 32.91 3.01
246 247 6.256757 GGTACTTCACATCTATGCAAGAGTTC 59.743 42.308 0.00 0.00 37.74 3.01
247 248 5.798132 ACTTCACATCTATGCAAGAGTTCA 58.202 37.500 0.00 0.00 37.74 3.18
248 249 6.233434 ACTTCACATCTATGCAAGAGTTCAA 58.767 36.000 0.00 0.00 37.74 2.69
249 250 6.148480 ACTTCACATCTATGCAAGAGTTCAAC 59.852 38.462 0.00 0.00 37.74 3.18
250 251 5.798132 TCACATCTATGCAAGAGTTCAACT 58.202 37.500 0.00 0.00 37.74 3.16
251 252 5.640783 TCACATCTATGCAAGAGTTCAACTG 59.359 40.000 0.00 0.00 37.74 3.16
252 253 4.940046 ACATCTATGCAAGAGTTCAACTGG 59.060 41.667 0.00 0.00 37.74 4.00
253 254 3.942829 TCTATGCAAGAGTTCAACTGGG 58.057 45.455 0.00 0.00 0.00 4.45
254 255 1.915141 ATGCAAGAGTTCAACTGGGG 58.085 50.000 0.00 0.00 0.00 4.96
255 256 0.823356 TGCAAGAGTTCAACTGGGGC 60.823 55.000 0.00 0.00 0.00 5.80
256 257 1.856265 GCAAGAGTTCAACTGGGGCG 61.856 60.000 0.00 0.00 0.00 6.13
257 258 0.250295 CAAGAGTTCAACTGGGGCGA 60.250 55.000 0.00 0.00 0.00 5.54
258 259 0.250338 AAGAGTTCAACTGGGGCGAC 60.250 55.000 0.00 0.00 0.00 5.19
259 260 1.122019 AGAGTTCAACTGGGGCGACT 61.122 55.000 0.00 0.00 0.00 4.18
260 261 0.606604 GAGTTCAACTGGGGCGACTA 59.393 55.000 0.00 0.00 0.00 2.59
261 262 0.320697 AGTTCAACTGGGGCGACTAC 59.679 55.000 0.00 0.00 0.00 2.73
262 263 1.012486 GTTCAACTGGGGCGACTACG 61.012 60.000 0.00 0.00 42.93 3.51
263 264 1.180456 TTCAACTGGGGCGACTACGA 61.180 55.000 0.00 0.00 42.66 3.43
268 269 4.547859 GGGGCGACTACGACTCTA 57.452 61.111 0.00 0.00 45.75 2.43
269 270 2.319219 GGGGCGACTACGACTCTAG 58.681 63.158 0.00 0.00 45.75 2.43
270 271 0.179062 GGGGCGACTACGACTCTAGA 60.179 60.000 0.00 0.00 45.75 2.43
271 272 2.140975 GGGGCGACTACGACTCTAGAG 61.141 61.905 18.49 18.49 45.75 2.43
272 273 1.938625 GGCGACTACGACTCTAGAGT 58.061 55.000 25.44 25.44 45.04 3.24
273 274 1.593933 GGCGACTACGACTCTAGAGTG 59.406 57.143 29.84 21.74 45.04 3.51
274 275 2.538437 GCGACTACGACTCTAGAGTGA 58.462 52.381 29.84 13.41 42.66 3.41
275 276 3.125316 GCGACTACGACTCTAGAGTGAT 58.875 50.000 29.84 18.57 42.66 3.06
276 277 4.297510 GCGACTACGACTCTAGAGTGATA 58.702 47.826 29.84 18.69 42.66 2.15
277 278 4.383649 GCGACTACGACTCTAGAGTGATAG 59.616 50.000 29.84 27.02 42.66 2.08
278 279 5.522456 CGACTACGACTCTAGAGTGATAGT 58.478 45.833 29.32 29.32 42.66 2.12
279 280 5.626543 CGACTACGACTCTAGAGTGATAGTC 59.373 48.000 34.22 34.22 43.53 2.59
280 281 5.846203 ACTACGACTCTAGAGTGATAGTCC 58.154 45.833 29.84 12.24 42.66 3.85
281 282 5.599656 ACTACGACTCTAGAGTGATAGTCCT 59.400 44.000 29.84 11.61 42.66 3.85
282 283 5.362105 ACGACTCTAGAGTGATAGTCCTT 57.638 43.478 29.84 4.49 42.66 3.36
283 284 6.482898 ACGACTCTAGAGTGATAGTCCTTA 57.517 41.667 29.84 0.00 42.66 2.69
284 285 6.887013 ACGACTCTAGAGTGATAGTCCTTAA 58.113 40.000 29.84 0.00 42.66 1.85
285 286 6.987992 ACGACTCTAGAGTGATAGTCCTTAAG 59.012 42.308 29.84 4.36 42.66 1.85
286 287 7.147689 ACGACTCTAGAGTGATAGTCCTTAAGA 60.148 40.741 29.84 0.00 42.66 2.10
287 288 7.384115 CGACTCTAGAGTGATAGTCCTTAAGAG 59.616 44.444 29.84 0.00 42.66 2.85
288 289 6.996282 ACTCTAGAGTGATAGTCCTTAAGAGC 59.004 42.308 24.62 0.00 40.75 4.09
289 290 6.901300 TCTAGAGTGATAGTCCTTAAGAGCA 58.099 40.000 3.36 0.00 0.00 4.26
290 291 7.522542 TCTAGAGTGATAGTCCTTAAGAGCAT 58.477 38.462 3.36 0.00 0.00 3.79
291 292 6.403866 AGAGTGATAGTCCTTAAGAGCATG 57.596 41.667 3.36 0.00 0.00 4.06
292 293 5.896678 AGAGTGATAGTCCTTAAGAGCATGT 59.103 40.000 3.36 0.00 0.00 3.21
293 294 5.911752 AGTGATAGTCCTTAAGAGCATGTG 58.088 41.667 3.36 0.00 0.00 3.21
294 295 4.509600 GTGATAGTCCTTAAGAGCATGTGC 59.490 45.833 3.36 0.00 42.49 4.57
295 296 2.409948 AGTCCTTAAGAGCATGTGCC 57.590 50.000 3.36 0.00 43.38 5.01
296 297 1.912043 AGTCCTTAAGAGCATGTGCCT 59.088 47.619 3.36 0.00 43.38 4.75
297 298 2.012673 GTCCTTAAGAGCATGTGCCTG 58.987 52.381 3.36 0.00 43.38 4.85
298 299 1.908619 TCCTTAAGAGCATGTGCCTGA 59.091 47.619 3.36 0.00 43.38 3.86
299 300 2.305635 TCCTTAAGAGCATGTGCCTGAA 59.694 45.455 3.36 0.00 43.38 3.02
300 301 2.681848 CCTTAAGAGCATGTGCCTGAAG 59.318 50.000 3.36 7.32 43.38 3.02
301 302 3.603532 CTTAAGAGCATGTGCCTGAAGA 58.396 45.455 11.91 0.00 43.38 2.87
302 303 1.818642 AAGAGCATGTGCCTGAAGAC 58.181 50.000 0.57 0.00 43.38 3.01
303 304 0.982704 AGAGCATGTGCCTGAAGACT 59.017 50.000 0.57 0.00 43.38 3.24
304 305 1.350351 AGAGCATGTGCCTGAAGACTT 59.650 47.619 0.57 0.00 43.38 3.01
305 306 1.736681 GAGCATGTGCCTGAAGACTTC 59.263 52.381 8.34 8.34 43.38 3.01
306 307 1.350351 AGCATGTGCCTGAAGACTTCT 59.650 47.619 16.02 0.00 43.38 2.85
307 308 1.736681 GCATGTGCCTGAAGACTTCTC 59.263 52.381 16.02 6.31 34.31 2.87
308 309 2.873245 GCATGTGCCTGAAGACTTCTCA 60.873 50.000 16.02 8.59 34.31 3.27
309 310 3.405831 CATGTGCCTGAAGACTTCTCAA 58.594 45.455 16.02 0.00 0.00 3.02
310 311 2.838736 TGTGCCTGAAGACTTCTCAAC 58.161 47.619 16.02 9.53 0.00 3.18
311 312 2.147150 GTGCCTGAAGACTTCTCAACC 58.853 52.381 16.02 1.85 0.00 3.77
312 313 1.270305 TGCCTGAAGACTTCTCAACCG 60.270 52.381 16.02 0.00 0.00 4.44
313 314 1.270358 GCCTGAAGACTTCTCAACCGT 60.270 52.381 16.02 0.00 0.00 4.83
314 315 2.678324 CCTGAAGACTTCTCAACCGTC 58.322 52.381 16.02 0.00 0.00 4.79
315 316 2.035961 CCTGAAGACTTCTCAACCGTCA 59.964 50.000 16.02 0.00 0.00 4.35
316 317 3.306364 CCTGAAGACTTCTCAACCGTCAT 60.306 47.826 16.02 0.00 0.00 3.06
317 318 4.082190 CCTGAAGACTTCTCAACCGTCATA 60.082 45.833 16.02 0.00 0.00 2.15
318 319 5.060662 TGAAGACTTCTCAACCGTCATAG 57.939 43.478 16.02 0.00 0.00 2.23
319 320 4.765339 TGAAGACTTCTCAACCGTCATAGA 59.235 41.667 16.02 0.00 0.00 1.98
320 321 4.705337 AGACTTCTCAACCGTCATAGAC 57.295 45.455 0.00 0.00 0.00 2.59
321 322 4.079970 AGACTTCTCAACCGTCATAGACA 58.920 43.478 0.00 0.00 32.09 3.41
322 323 4.523173 AGACTTCTCAACCGTCATAGACAA 59.477 41.667 0.00 0.00 32.09 3.18
323 324 4.810790 ACTTCTCAACCGTCATAGACAAG 58.189 43.478 0.00 0.00 32.09 3.16
324 325 3.868757 TCTCAACCGTCATAGACAAGG 57.131 47.619 0.00 0.00 32.09 3.61
325 326 3.162666 TCTCAACCGTCATAGACAAGGT 58.837 45.455 0.00 0.00 36.66 3.50
326 327 3.192844 TCTCAACCGTCATAGACAAGGTC 59.807 47.826 0.00 0.00 33.50 3.85
327 328 2.894765 TCAACCGTCATAGACAAGGTCA 59.105 45.455 0.00 0.00 34.60 4.02
328 329 3.322541 TCAACCGTCATAGACAAGGTCAA 59.677 43.478 0.00 0.00 34.60 3.18
329 330 3.314541 ACCGTCATAGACAAGGTCAAC 57.685 47.619 0.00 0.00 34.60 3.18
330 331 2.259618 CCGTCATAGACAAGGTCAACG 58.740 52.381 0.00 3.60 34.60 4.10
331 332 2.259618 CGTCATAGACAAGGTCAACGG 58.740 52.381 0.00 0.00 34.60 4.44
332 333 2.000447 GTCATAGACAAGGTCAACGGC 59.000 52.381 0.00 0.00 34.60 5.68
333 334 1.621317 TCATAGACAAGGTCAACGGCA 59.379 47.619 0.00 0.00 34.60 5.69
334 335 2.037902 TCATAGACAAGGTCAACGGCAA 59.962 45.455 0.00 0.00 34.60 4.52
335 336 1.873698 TAGACAAGGTCAACGGCAAC 58.126 50.000 0.00 0.00 34.60 4.17
375 376 2.358737 GCGGCAGCAGTAGTGGTT 60.359 61.111 3.18 0.00 44.35 3.67
376 377 1.966451 GCGGCAGCAGTAGTGGTTT 60.966 57.895 3.18 0.00 44.35 3.27
377 378 1.515521 GCGGCAGCAGTAGTGGTTTT 61.516 55.000 3.18 0.00 44.35 2.43
378 379 0.951558 CGGCAGCAGTAGTGGTTTTT 59.048 50.000 0.00 0.00 29.64 1.94
379 380 1.069227 CGGCAGCAGTAGTGGTTTTTC 60.069 52.381 0.00 0.00 29.64 2.29
380 381 1.069227 GGCAGCAGTAGTGGTTTTTCG 60.069 52.381 0.00 0.00 29.64 3.46
381 382 1.069227 GCAGCAGTAGTGGTTTTTCGG 60.069 52.381 0.00 0.00 29.64 4.30
382 383 2.218603 CAGCAGTAGTGGTTTTTCGGT 58.781 47.619 0.00 0.00 29.64 4.69
383 384 2.032030 CAGCAGTAGTGGTTTTTCGGTG 60.032 50.000 0.00 0.00 29.64 4.94
384 385 1.265905 GCAGTAGTGGTTTTTCGGTGG 59.734 52.381 0.00 0.00 0.00 4.61
385 386 2.567985 CAGTAGTGGTTTTTCGGTGGT 58.432 47.619 0.00 0.00 0.00 4.16
386 387 2.946990 CAGTAGTGGTTTTTCGGTGGTT 59.053 45.455 0.00 0.00 0.00 3.67
393 394 5.361571 AGTGGTTTTTCGGTGGTTTTAGAAT 59.638 36.000 0.00 0.00 0.00 2.40
400 401 4.430007 TCGGTGGTTTTAGAATCTCGATG 58.570 43.478 0.00 0.00 0.00 3.84
1191 1196 4.472470 GTGGTACAGTAACTATTTCCCCCT 59.528 45.833 0.00 0.00 41.80 4.79
1192 1197 4.472108 TGGTACAGTAACTATTTCCCCCTG 59.528 45.833 0.00 0.00 0.00 4.45
1193 1198 4.472470 GGTACAGTAACTATTTCCCCCTGT 59.528 45.833 0.00 0.00 35.92 4.00
1241 1247 8.077836 GAATTACTAATTCGGATGTTCTCCTG 57.922 38.462 5.89 0.00 42.47 3.86
1251 1257 2.035442 GTTCTCCTGAACTGCGGCC 61.035 63.158 0.00 0.00 46.56 6.13
1253 1259 2.125350 CTCCTGAACTGCGGCCTC 60.125 66.667 0.00 0.00 0.00 4.70
1290 1296 1.531522 CCGTTTTTCGTCGTCGTCGT 61.532 55.000 11.41 0.00 37.94 4.34
1442 1448 3.695060 GACCTCGAAGACTACCAGATTGA 59.305 47.826 0.00 0.00 0.00 2.57
1476 1482 1.956477 GTGCTTCAGTTGTTCCCACAT 59.044 47.619 0.00 0.00 31.06 3.21
1500 1506 4.795635 GCGATTCTGATATGCTGTCTCTGT 60.796 45.833 0.00 0.00 0.00 3.41
1512 1518 3.330267 CTGTCTCTGTACCCTGCTTTTC 58.670 50.000 0.00 0.00 0.00 2.29
1547 1553 3.610911 AGTTATCTTTGCCTGTAGGTGC 58.389 45.455 0.00 0.00 37.57 5.01
1644 1650 8.037758 GGCTACATCATATATAAGCTCAGTGTT 58.962 37.037 0.00 0.00 0.00 3.32
1680 1686 0.466189 ATCGGCTGCGGAAATCCAAT 60.466 50.000 13.99 0.00 35.14 3.16
1737 1743 8.316640 ACTCTTTTAACTGAACTAATGCTCTG 57.683 34.615 0.00 0.00 0.00 3.35
1754 1761 1.277273 TCTGTGCCTTCTCATGACTGG 59.723 52.381 0.00 0.00 0.00 4.00
1976 1983 4.922206 AGAAGCTGGATCATTGTACCAAA 58.078 39.130 0.00 0.00 33.14 3.28
2147 2158 3.746492 GTCTCCACATTTGAAGCTTACGT 59.254 43.478 0.00 0.00 0.00 3.57
2285 2330 3.737559 TTTGCATGTCCATCCTTACCT 57.262 42.857 0.00 0.00 0.00 3.08
2286 2331 4.853468 TTTGCATGTCCATCCTTACCTA 57.147 40.909 0.00 0.00 0.00 3.08
2287 2332 3.838244 TGCATGTCCATCCTTACCTAC 57.162 47.619 0.00 0.00 0.00 3.18
2288 2333 3.384168 TGCATGTCCATCCTTACCTACT 58.616 45.455 0.00 0.00 0.00 2.57
2289 2334 4.552674 TGCATGTCCATCCTTACCTACTA 58.447 43.478 0.00 0.00 0.00 1.82
2290 2335 4.344102 TGCATGTCCATCCTTACCTACTAC 59.656 45.833 0.00 0.00 0.00 2.73
2291 2336 4.344102 GCATGTCCATCCTTACCTACTACA 59.656 45.833 0.00 0.00 0.00 2.74
2292 2337 5.509840 GCATGTCCATCCTTACCTACTACAG 60.510 48.000 0.00 0.00 0.00 2.74
3078 3322 7.117812 TCTCAATCAGAACCAGAAATACGTTTC 59.882 37.037 0.00 0.00 43.24 2.78
3118 3362 6.703165 CCAAAATGAAGAGAAAGGTTGAAAGG 59.297 38.462 0.00 0.00 0.00 3.11
3239 3483 5.779241 ATGAAACTATTCCTGGAGTCCAA 57.221 39.130 14.17 0.00 34.49 3.53
3277 3521 4.223477 ACCAAATTTCACCATCTTCCATGG 59.777 41.667 4.97 4.97 44.54 3.66
3322 3567 6.636705 TGGTCACTTATAACATGTACCAGTC 58.363 40.000 8.45 0.00 32.26 3.51
3423 3793 7.264373 AGAACACAAGTTTATCAGAAACAGG 57.736 36.000 0.00 0.00 38.30 4.00
3492 3864 4.245660 TGTCGCTTCTCCTTTCAATACAG 58.754 43.478 0.00 0.00 0.00 2.74
3588 3960 1.147824 CTGGTAGCTGCATCCCCTG 59.852 63.158 3.61 0.00 0.00 4.45
3997 4370 6.088824 GCCATCTCATTTAAAAGTGTGACTG 58.911 40.000 0.00 0.00 0.00 3.51
3998 4371 6.615088 CCATCTCATTTAAAAGTGTGACTGG 58.385 40.000 0.00 1.42 0.00 4.00
3999 4372 5.689383 TCTCATTTAAAAGTGTGACTGGC 57.311 39.130 0.00 0.00 0.00 4.85
4000 4373 4.518970 TCTCATTTAAAAGTGTGACTGGCC 59.481 41.667 0.00 0.00 0.00 5.36
4001 4374 4.211125 TCATTTAAAAGTGTGACTGGCCA 58.789 39.130 4.71 4.71 0.00 5.36
4002 4375 4.646945 TCATTTAAAAGTGTGACTGGCCAA 59.353 37.500 7.01 0.00 0.00 4.52
4003 4376 5.127845 TCATTTAAAAGTGTGACTGGCCAAA 59.872 36.000 7.01 0.00 0.00 3.28
4004 4377 2.959507 AAAAGTGTGACTGGCCAAAC 57.040 45.000 7.01 6.40 0.00 2.93
4005 4378 1.846007 AAAGTGTGACTGGCCAAACA 58.154 45.000 7.01 9.31 0.00 2.83
4006 4379 1.392589 AAGTGTGACTGGCCAAACAG 58.607 50.000 7.01 0.00 44.03 3.16
4007 4380 1.103398 AGTGTGACTGGCCAAACAGC 61.103 55.000 7.01 7.04 42.21 4.40
4008 4381 1.077140 TGTGACTGGCCAAACAGCA 60.077 52.632 7.01 8.18 42.21 4.41
4063 4436 9.515020 ACCGAAATATTTTTGCAGTTATACATG 57.485 29.630 1.43 0.00 0.00 3.21
4322 4695 0.890542 GTTCAGGCTGCATGTGGACA 60.891 55.000 14.40 0.00 0.00 4.02
4848 5221 5.850557 TCTTACCCATGTTGCCATATTTG 57.149 39.130 0.00 0.00 0.00 2.32
4898 5272 2.616842 GGTATTTCATGGTAGGTTGCCG 59.383 50.000 0.00 0.00 0.00 5.69
5091 5465 1.760086 CGGAGATGAGCCTCAGGGT 60.760 63.158 0.00 0.00 34.94 4.34
5485 5924 6.059787 AGAGGCTGTTCTGATGAAAAGTAT 57.940 37.500 0.00 0.00 39.23 2.12
5503 5942 4.998051 AGTATGTTGATTTCAGGGTGGTT 58.002 39.130 0.00 0.00 0.00 3.67
5505 5944 4.871933 ATGTTGATTTCAGGGTGGTTTC 57.128 40.909 0.00 0.00 0.00 2.78
5542 5981 7.801716 TGCAAAGTTACCTTGATCATATACC 57.198 36.000 0.00 0.00 0.00 2.73
5543 5982 7.342581 TGCAAAGTTACCTTGATCATATACCA 58.657 34.615 0.00 0.00 0.00 3.25
5569 6008 7.856145 TTTTTGTTACAATGAAAAGGCACAT 57.144 28.000 0.00 0.00 0.00 3.21
5648 6107 1.084289 ATGCCGCTCCGTAAAAGAAC 58.916 50.000 0.00 0.00 0.00 3.01
5655 6114 3.367025 CGCTCCGTAAAAGAACGAGAATT 59.633 43.478 0.00 0.00 45.68 2.17
5658 6117 5.333875 GCTCCGTAAAAGAACGAGAATTTGT 60.334 40.000 0.00 0.00 45.68 2.83
5777 6236 8.768397 AGTAAGTGGATACCAATCAAATAGTCA 58.232 33.333 0.00 0.00 34.18 3.41
5837 6296 2.561478 TGGTAAAGCCACAACTCCTC 57.439 50.000 0.00 0.00 43.61 3.71
5838 6297 2.054799 TGGTAAAGCCACAACTCCTCT 58.945 47.619 0.00 0.00 43.61 3.69
5840 6299 3.844211 TGGTAAAGCCACAACTCCTCTAT 59.156 43.478 0.00 0.00 43.61 1.98
5841 6300 4.192317 GGTAAAGCCACAACTCCTCTATG 58.808 47.826 0.00 0.00 37.17 2.23
5842 6301 3.356529 AAAGCCACAACTCCTCTATGG 57.643 47.619 0.00 0.00 37.10 2.74
5843 6302 2.254152 AGCCACAACTCCTCTATGGA 57.746 50.000 0.00 0.00 43.86 3.41
5844 6303 2.551270 AGCCACAACTCCTCTATGGAA 58.449 47.619 0.00 0.00 45.63 3.53
5869 6331 8.237811 ACTAAGTGAATTTGGTGAAGTGAAAT 57.762 30.769 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.427547 CCTAACCTAGACTACTAACCAGATCG 59.572 46.154 0.00 0.00 0.00 3.69
1 2 7.516452 TCCTAACCTAGACTACTAACCAGATC 58.484 42.308 0.00 0.00 0.00 2.75
4 5 9.810870 AATATCCTAACCTAGACTACTAACCAG 57.189 37.037 0.00 0.00 0.00 4.00
30 31 4.272504 CACACCTGCGAGAACTAAGAAAAA 59.727 41.667 0.00 0.00 0.00 1.94
31 32 3.807622 CACACCTGCGAGAACTAAGAAAA 59.192 43.478 0.00 0.00 0.00 2.29
32 33 3.390135 CACACCTGCGAGAACTAAGAAA 58.610 45.455 0.00 0.00 0.00 2.52
33 34 2.288825 CCACACCTGCGAGAACTAAGAA 60.289 50.000 0.00 0.00 0.00 2.52
34 35 1.272490 CCACACCTGCGAGAACTAAGA 59.728 52.381 0.00 0.00 0.00 2.10
35 36 1.714794 CCACACCTGCGAGAACTAAG 58.285 55.000 0.00 0.00 0.00 2.18
36 37 0.320421 GCCACACCTGCGAGAACTAA 60.320 55.000 0.00 0.00 0.00 2.24
37 38 1.292223 GCCACACCTGCGAGAACTA 59.708 57.895 0.00 0.00 0.00 2.24
38 39 2.031163 GCCACACCTGCGAGAACT 59.969 61.111 0.00 0.00 0.00 3.01
56 57 3.880846 CTTTGCCATCCGCCGAGC 61.881 66.667 0.00 0.00 36.24 5.03
57 58 3.880846 GCTTTGCCATCCGCCGAG 61.881 66.667 0.00 0.00 36.24 4.63
58 59 3.918253 AAGCTTTGCCATCCGCCGA 62.918 57.895 0.00 0.00 36.24 5.54
59 60 3.401243 GAAGCTTTGCCATCCGCCG 62.401 63.158 0.00 0.00 36.24 6.46
60 61 1.997928 GAGAAGCTTTGCCATCCGCC 61.998 60.000 0.00 0.00 36.24 6.13
61 62 1.431036 GAGAAGCTTTGCCATCCGC 59.569 57.895 0.00 0.00 38.31 5.54
62 63 0.393537 AGGAGAAGCTTTGCCATCCG 60.394 55.000 17.57 0.00 32.52 4.18
63 64 1.844687 AAGGAGAAGCTTTGCCATCC 58.155 50.000 17.57 12.28 0.00 3.51
64 65 2.821969 TCAAAGGAGAAGCTTTGCCATC 59.178 45.455 17.57 5.10 39.58 3.51
65 66 2.560105 GTCAAAGGAGAAGCTTTGCCAT 59.440 45.455 17.57 6.01 39.58 4.40
66 67 1.956477 GTCAAAGGAGAAGCTTTGCCA 59.044 47.619 17.57 0.00 39.58 4.92
67 68 2.234143 AGTCAAAGGAGAAGCTTTGCC 58.766 47.619 0.00 5.35 39.58 4.52
68 69 3.998099 AAGTCAAAGGAGAAGCTTTGC 57.002 42.857 0.00 0.00 39.58 3.68
69 70 5.067023 AGACAAAGTCAAAGGAGAAGCTTTG 59.933 40.000 0.00 11.69 44.60 2.77
70 71 5.196695 AGACAAAGTCAAAGGAGAAGCTTT 58.803 37.500 0.00 0.00 34.60 3.51
71 72 4.786425 AGACAAAGTCAAAGGAGAAGCTT 58.214 39.130 0.00 0.00 34.60 3.74
72 73 4.429854 AGACAAAGTCAAAGGAGAAGCT 57.570 40.909 0.00 0.00 34.60 3.74
73 74 4.023622 GGAAGACAAAGTCAAAGGAGAAGC 60.024 45.833 0.00 0.00 34.60 3.86
74 75 4.212214 CGGAAGACAAAGTCAAAGGAGAAG 59.788 45.833 0.00 0.00 34.60 2.85
75 76 4.127171 CGGAAGACAAAGTCAAAGGAGAA 58.873 43.478 0.00 0.00 34.60 2.87
76 77 3.494398 CCGGAAGACAAAGTCAAAGGAGA 60.494 47.826 0.00 0.00 34.60 3.71
77 78 2.808543 CCGGAAGACAAAGTCAAAGGAG 59.191 50.000 0.00 0.00 34.60 3.69
78 79 2.486548 CCCGGAAGACAAAGTCAAAGGA 60.487 50.000 0.73 0.00 34.60 3.36
79 80 1.880027 CCCGGAAGACAAAGTCAAAGG 59.120 52.381 0.73 0.00 34.60 3.11
80 81 1.266989 GCCCGGAAGACAAAGTCAAAG 59.733 52.381 0.73 0.00 34.60 2.77
81 82 1.133915 AGCCCGGAAGACAAAGTCAAA 60.134 47.619 0.73 0.00 34.60 2.69
82 83 0.472471 AGCCCGGAAGACAAAGTCAA 59.528 50.000 0.73 0.00 34.60 3.18
83 84 0.472471 AAGCCCGGAAGACAAAGTCA 59.528 50.000 0.73 0.00 34.60 3.41
84 85 1.157585 GAAGCCCGGAAGACAAAGTC 58.842 55.000 0.73 0.00 0.00 3.01
85 86 0.602905 CGAAGCCCGGAAGACAAAGT 60.603 55.000 0.73 0.00 33.91 2.66
86 87 0.320421 TCGAAGCCCGGAAGACAAAG 60.320 55.000 0.73 0.00 39.14 2.77
87 88 0.323629 ATCGAAGCCCGGAAGACAAA 59.676 50.000 0.73 0.00 39.14 2.83
88 89 0.323629 AATCGAAGCCCGGAAGACAA 59.676 50.000 0.73 0.00 39.14 3.18
89 90 0.108329 GAATCGAAGCCCGGAAGACA 60.108 55.000 0.73 0.00 39.14 3.41
90 91 0.175989 AGAATCGAAGCCCGGAAGAC 59.824 55.000 0.73 0.00 39.14 3.01
91 92 0.902531 AAGAATCGAAGCCCGGAAGA 59.097 50.000 0.73 0.00 39.14 2.87
92 93 1.134670 AGAAGAATCGAAGCCCGGAAG 60.135 52.381 0.73 0.00 39.14 3.46
93 94 0.902531 AGAAGAATCGAAGCCCGGAA 59.097 50.000 0.73 0.00 39.14 4.30
94 95 0.460311 GAGAAGAATCGAAGCCCGGA 59.540 55.000 0.73 0.00 39.14 5.14
95 96 0.872021 CGAGAAGAATCGAAGCCCGG 60.872 60.000 0.00 0.00 45.56 5.73
96 97 2.582959 CGAGAAGAATCGAAGCCCG 58.417 57.895 0.00 0.00 45.56 6.13
103 104 3.095016 CTGACGAACTCGAGAAGAATCG 58.905 50.000 21.68 20.14 44.07 3.34
104 105 4.086199 ACTGACGAACTCGAGAAGAATC 57.914 45.455 21.68 10.12 43.02 2.52
105 106 3.754323 AGACTGACGAACTCGAGAAGAAT 59.246 43.478 21.68 0.00 43.02 2.40
106 107 3.058846 CAGACTGACGAACTCGAGAAGAA 60.059 47.826 21.68 0.00 43.02 2.52
107 108 2.480802 CAGACTGACGAACTCGAGAAGA 59.519 50.000 21.68 0.00 43.02 2.87
108 109 2.413502 CCAGACTGACGAACTCGAGAAG 60.414 54.545 21.68 11.92 43.02 2.85
109 110 1.535896 CCAGACTGACGAACTCGAGAA 59.464 52.381 21.68 0.00 43.02 2.87
110 111 1.157585 CCAGACTGACGAACTCGAGA 58.842 55.000 21.68 0.00 43.02 4.04
111 112 1.135916 GTCCAGACTGACGAACTCGAG 60.136 57.143 11.84 11.84 43.02 4.04
112 113 0.873054 GTCCAGACTGACGAACTCGA 59.127 55.000 3.32 0.00 43.02 4.04
113 114 3.386379 GTCCAGACTGACGAACTCG 57.614 57.895 3.32 0.00 46.33 4.18
120 121 2.664971 CGTTGACTACGTCCAGACTGAC 60.665 54.545 3.32 0.00 45.14 3.51
121 122 1.534163 CGTTGACTACGTCCAGACTGA 59.466 52.381 3.32 0.00 45.14 3.41
122 123 1.965083 CGTTGACTACGTCCAGACTG 58.035 55.000 0.00 0.00 45.14 3.51
141 142 2.095161 CAGGAATATACGTCGGAGCTCC 60.095 54.545 23.79 23.79 0.00 4.70
142 143 2.668834 GCAGGAATATACGTCGGAGCTC 60.669 54.545 4.71 4.71 0.00 4.09
143 144 1.269998 GCAGGAATATACGTCGGAGCT 59.730 52.381 0.00 0.00 0.00 4.09
144 145 1.669211 GGCAGGAATATACGTCGGAGC 60.669 57.143 0.00 0.00 0.00 4.70
145 146 1.611977 TGGCAGGAATATACGTCGGAG 59.388 52.381 0.00 0.00 0.00 4.63
146 147 1.694844 TGGCAGGAATATACGTCGGA 58.305 50.000 0.00 0.00 0.00 4.55
147 148 2.231478 AGATGGCAGGAATATACGTCGG 59.769 50.000 0.00 0.00 0.00 4.79
148 149 3.191581 AGAGATGGCAGGAATATACGTCG 59.808 47.826 0.00 0.00 0.00 5.12
149 150 4.792521 AGAGATGGCAGGAATATACGTC 57.207 45.455 0.00 0.00 0.00 4.34
150 151 5.300752 CAAAGAGATGGCAGGAATATACGT 58.699 41.667 0.00 0.00 0.00 3.57
151 152 4.692625 CCAAAGAGATGGCAGGAATATACG 59.307 45.833 0.00 0.00 32.78 3.06
152 153 5.006386 CCCAAAGAGATGGCAGGAATATAC 58.994 45.833 0.00 0.00 39.26 1.47
153 154 4.043310 CCCCAAAGAGATGGCAGGAATATA 59.957 45.833 0.00 0.00 39.26 0.86
154 155 3.181425 CCCCAAAGAGATGGCAGGAATAT 60.181 47.826 0.00 0.00 39.26 1.28
155 156 2.175499 CCCCAAAGAGATGGCAGGAATA 59.825 50.000 0.00 0.00 39.26 1.75
156 157 1.063417 CCCCAAAGAGATGGCAGGAAT 60.063 52.381 0.00 0.00 39.26 3.01
157 158 0.332632 CCCCAAAGAGATGGCAGGAA 59.667 55.000 0.00 0.00 39.26 3.36
158 159 2.001803 CCCCAAAGAGATGGCAGGA 58.998 57.895 0.00 0.00 39.26 3.86
159 160 1.755783 GCCCCAAAGAGATGGCAGG 60.756 63.158 0.00 0.00 43.46 4.85
160 161 2.117156 CGCCCCAAAGAGATGGCAG 61.117 63.158 0.00 0.00 44.22 4.85
161 162 2.045045 CGCCCCAAAGAGATGGCA 60.045 61.111 0.00 0.00 44.22 4.92
162 163 2.830370 CCGCCCCAAAGAGATGGC 60.830 66.667 0.00 0.00 39.26 4.40
163 164 1.750399 CACCGCCCCAAAGAGATGG 60.750 63.158 0.00 0.00 40.35 3.51
164 165 0.745845 CTCACCGCCCCAAAGAGATG 60.746 60.000 0.00 0.00 0.00 2.90
165 166 1.604378 CTCACCGCCCCAAAGAGAT 59.396 57.895 0.00 0.00 0.00 2.75
166 167 2.592993 CCTCACCGCCCCAAAGAGA 61.593 63.158 0.00 0.00 0.00 3.10
167 168 2.045926 CCTCACCGCCCCAAAGAG 60.046 66.667 0.00 0.00 0.00 2.85
168 169 1.128809 TAACCTCACCGCCCCAAAGA 61.129 55.000 0.00 0.00 0.00 2.52
169 170 0.676782 CTAACCTCACCGCCCCAAAG 60.677 60.000 0.00 0.00 0.00 2.77
170 171 1.377229 CTAACCTCACCGCCCCAAA 59.623 57.895 0.00 0.00 0.00 3.28
171 172 3.074281 CTAACCTCACCGCCCCAA 58.926 61.111 0.00 0.00 0.00 4.12
172 173 3.712907 GCTAACCTCACCGCCCCA 61.713 66.667 0.00 0.00 0.00 4.96
173 174 4.832608 CGCTAACCTCACCGCCCC 62.833 72.222 0.00 0.00 0.00 5.80
174 175 3.600898 AACGCTAACCTCACCGCCC 62.601 63.158 0.00 0.00 0.00 6.13
175 176 1.632948 GAAACGCTAACCTCACCGCC 61.633 60.000 0.00 0.00 0.00 6.13
176 177 0.669625 AGAAACGCTAACCTCACCGC 60.670 55.000 0.00 0.00 0.00 5.68
177 178 1.347320 GAGAAACGCTAACCTCACCG 58.653 55.000 0.00 0.00 0.00 4.94
178 179 1.336609 ACGAGAAACGCTAACCTCACC 60.337 52.381 0.00 0.00 46.94 4.02
179 180 1.984297 GACGAGAAACGCTAACCTCAC 59.016 52.381 0.00 0.00 46.94 3.51
180 181 1.610038 TGACGAGAAACGCTAACCTCA 59.390 47.619 0.00 0.00 46.94 3.86
181 182 2.342910 TGACGAGAAACGCTAACCTC 57.657 50.000 0.00 0.00 46.94 3.85
182 183 2.029290 ACATGACGAGAAACGCTAACCT 60.029 45.455 0.00 0.00 46.94 3.50
183 184 2.092211 CACATGACGAGAAACGCTAACC 59.908 50.000 0.00 0.00 46.94 2.85
184 185 2.092211 CCACATGACGAGAAACGCTAAC 59.908 50.000 0.00 0.00 46.94 2.34
185 186 2.333926 CCACATGACGAGAAACGCTAA 58.666 47.619 0.00 0.00 46.94 3.09
186 187 1.990799 CCACATGACGAGAAACGCTA 58.009 50.000 0.00 0.00 46.94 4.26
187 188 1.291877 GCCACATGACGAGAAACGCT 61.292 55.000 0.00 0.00 46.94 5.07
188 189 1.132640 GCCACATGACGAGAAACGC 59.867 57.895 0.00 0.00 46.94 4.84
190 191 2.822306 TCGCCACATGACGAGAAAC 58.178 52.632 0.00 0.00 33.69 2.78
195 196 1.358877 CAAATCTCGCCACATGACGA 58.641 50.000 0.00 4.86 36.73 4.20
196 197 0.374758 CCAAATCTCGCCACATGACG 59.625 55.000 0.00 0.00 0.00 4.35
197 198 1.131126 CACCAAATCTCGCCACATGAC 59.869 52.381 0.00 0.00 0.00 3.06
198 199 1.271325 ACACCAAATCTCGCCACATGA 60.271 47.619 0.00 0.00 0.00 3.07
199 200 1.167851 ACACCAAATCTCGCCACATG 58.832 50.000 0.00 0.00 0.00 3.21
200 201 1.909700 AACACCAAATCTCGCCACAT 58.090 45.000 0.00 0.00 0.00 3.21
201 202 2.422597 CTAACACCAAATCTCGCCACA 58.577 47.619 0.00 0.00 0.00 4.17
202 203 1.737793 CCTAACACCAAATCTCGCCAC 59.262 52.381 0.00 0.00 0.00 5.01
203 204 1.349688 ACCTAACACCAAATCTCGCCA 59.650 47.619 0.00 0.00 0.00 5.69
204 205 2.109425 ACCTAACACCAAATCTCGCC 57.891 50.000 0.00 0.00 0.00 5.54
205 206 3.858247 AGTACCTAACACCAAATCTCGC 58.142 45.455 0.00 0.00 0.00 5.03
206 207 5.347907 GTGAAGTACCTAACACCAAATCTCG 59.652 44.000 0.00 0.00 0.00 4.04
207 208 6.228258 TGTGAAGTACCTAACACCAAATCTC 58.772 40.000 0.00 0.00 33.08 2.75
208 209 6.182507 TGTGAAGTACCTAACACCAAATCT 57.817 37.500 0.00 0.00 33.08 2.40
209 210 6.879458 AGATGTGAAGTACCTAACACCAAATC 59.121 38.462 0.00 0.00 31.61 2.17
210 211 6.779860 AGATGTGAAGTACCTAACACCAAAT 58.220 36.000 0.00 0.00 33.08 2.32
211 212 6.182507 AGATGTGAAGTACCTAACACCAAA 57.817 37.500 0.00 0.00 33.08 3.28
212 213 5.818678 AGATGTGAAGTACCTAACACCAA 57.181 39.130 0.00 0.00 33.08 3.67
213 214 6.629515 GCATAGATGTGAAGTACCTAACACCA 60.630 42.308 0.00 0.00 33.08 4.17
214 215 5.753921 GCATAGATGTGAAGTACCTAACACC 59.246 44.000 0.00 0.00 33.08 4.16
215 216 6.338146 TGCATAGATGTGAAGTACCTAACAC 58.662 40.000 0.00 0.00 0.00 3.32
216 217 6.538945 TGCATAGATGTGAAGTACCTAACA 57.461 37.500 0.00 0.00 0.00 2.41
217 218 7.265673 TCTTGCATAGATGTGAAGTACCTAAC 58.734 38.462 0.00 0.00 0.00 2.34
218 219 7.124298 ACTCTTGCATAGATGTGAAGTACCTAA 59.876 37.037 3.74 0.00 30.92 2.69
219 220 6.607600 ACTCTTGCATAGATGTGAAGTACCTA 59.392 38.462 3.74 0.00 30.92 3.08
220 221 5.423610 ACTCTTGCATAGATGTGAAGTACCT 59.576 40.000 3.74 0.00 30.92 3.08
221 222 5.665459 ACTCTTGCATAGATGTGAAGTACC 58.335 41.667 3.74 0.00 30.92 3.34
222 223 6.813649 TGAACTCTTGCATAGATGTGAAGTAC 59.186 38.462 3.74 0.00 30.92 2.73
223 224 6.935167 TGAACTCTTGCATAGATGTGAAGTA 58.065 36.000 3.74 0.00 30.92 2.24
224 225 5.798132 TGAACTCTTGCATAGATGTGAAGT 58.202 37.500 3.74 0.00 30.92 3.01
225 226 6.370994 AGTTGAACTCTTGCATAGATGTGAAG 59.629 38.462 0.00 0.00 30.92 3.02
226 227 6.148315 CAGTTGAACTCTTGCATAGATGTGAA 59.852 38.462 0.00 0.00 30.92 3.18
227 228 5.640783 CAGTTGAACTCTTGCATAGATGTGA 59.359 40.000 0.00 0.00 30.92 3.58
228 229 5.163784 CCAGTTGAACTCTTGCATAGATGTG 60.164 44.000 0.00 0.00 30.92 3.21
229 230 4.940046 CCAGTTGAACTCTTGCATAGATGT 59.060 41.667 0.00 1.14 30.92 3.06
230 231 4.334759 CCCAGTTGAACTCTTGCATAGATG 59.665 45.833 0.00 0.00 30.92 2.90
231 232 4.521146 CCCAGTTGAACTCTTGCATAGAT 58.479 43.478 0.00 0.00 30.92 1.98
232 233 3.307691 CCCCAGTTGAACTCTTGCATAGA 60.308 47.826 0.00 1.66 0.00 1.98
233 234 3.012518 CCCCAGTTGAACTCTTGCATAG 58.987 50.000 0.00 0.00 0.00 2.23
234 235 2.879756 GCCCCAGTTGAACTCTTGCATA 60.880 50.000 0.00 0.00 0.00 3.14
235 236 1.915141 CCCCAGTTGAACTCTTGCAT 58.085 50.000 0.00 0.00 0.00 3.96
236 237 0.823356 GCCCCAGTTGAACTCTTGCA 60.823 55.000 0.00 0.00 0.00 4.08
237 238 1.856265 CGCCCCAGTTGAACTCTTGC 61.856 60.000 0.00 0.00 0.00 4.01
238 239 0.250295 TCGCCCCAGTTGAACTCTTG 60.250 55.000 0.00 0.00 0.00 3.02
239 240 0.250338 GTCGCCCCAGTTGAACTCTT 60.250 55.000 0.00 0.00 0.00 2.85
240 241 1.122019 AGTCGCCCCAGTTGAACTCT 61.122 55.000 0.00 0.00 0.00 3.24
241 242 0.606604 TAGTCGCCCCAGTTGAACTC 59.393 55.000 0.00 0.00 0.00 3.01
242 243 0.320697 GTAGTCGCCCCAGTTGAACT 59.679 55.000 0.00 0.00 0.00 3.01
243 244 1.012486 CGTAGTCGCCCCAGTTGAAC 61.012 60.000 0.00 0.00 0.00 3.18
244 245 1.180456 TCGTAGTCGCCCCAGTTGAA 61.180 55.000 0.00 0.00 36.96 2.69
245 246 1.604308 TCGTAGTCGCCCCAGTTGA 60.604 57.895 0.00 0.00 36.96 3.18
246 247 1.445582 GTCGTAGTCGCCCCAGTTG 60.446 63.158 0.00 0.00 36.96 3.16
247 248 1.593296 GAGTCGTAGTCGCCCCAGTT 61.593 60.000 0.00 0.00 36.96 3.16
248 249 2.035312 AGTCGTAGTCGCCCCAGT 59.965 61.111 0.00 0.00 36.96 4.00
249 250 0.463295 TAGAGTCGTAGTCGCCCCAG 60.463 60.000 0.00 0.00 36.96 4.45
250 251 0.463295 CTAGAGTCGTAGTCGCCCCA 60.463 60.000 0.00 0.00 36.96 4.96
251 252 0.179062 TCTAGAGTCGTAGTCGCCCC 60.179 60.000 0.00 0.00 36.96 5.80
252 253 1.219646 CTCTAGAGTCGTAGTCGCCC 58.780 60.000 11.89 0.00 36.96 6.13
253 254 1.593933 CACTCTAGAGTCGTAGTCGCC 59.406 57.143 22.76 0.00 40.20 5.54
254 255 2.538437 TCACTCTAGAGTCGTAGTCGC 58.462 52.381 22.76 0.00 40.20 5.19
255 256 5.522456 ACTATCACTCTAGAGTCGTAGTCG 58.478 45.833 26.45 15.41 40.20 4.18
256 257 5.922544 GGACTATCACTCTAGAGTCGTAGTC 59.077 48.000 35.10 35.10 44.49 2.59
257 258 5.599656 AGGACTATCACTCTAGAGTCGTAGT 59.400 44.000 29.47 29.47 40.20 2.73
258 259 6.092955 AGGACTATCACTCTAGAGTCGTAG 57.907 45.833 22.76 24.56 40.20 3.51
259 260 6.482898 AAGGACTATCACTCTAGAGTCGTA 57.517 41.667 22.76 15.96 40.20 3.43
260 261 5.362105 AAGGACTATCACTCTAGAGTCGT 57.638 43.478 22.76 16.02 40.20 4.34
261 262 7.211573 TCTTAAGGACTATCACTCTAGAGTCG 58.788 42.308 22.76 17.08 40.20 4.18
262 263 7.172703 GCTCTTAAGGACTATCACTCTAGAGTC 59.827 44.444 22.76 10.43 40.20 3.36
263 264 6.996282 GCTCTTAAGGACTATCACTCTAGAGT 59.004 42.308 20.00 20.00 43.61 3.24
264 265 6.995686 TGCTCTTAAGGACTATCACTCTAGAG 59.004 42.308 18.49 18.49 32.11 2.43
265 266 6.901300 TGCTCTTAAGGACTATCACTCTAGA 58.099 40.000 1.85 0.00 0.00 2.43
266 267 7.230510 ACATGCTCTTAAGGACTATCACTCTAG 59.769 40.741 1.85 0.00 0.00 2.43
267 268 7.013750 CACATGCTCTTAAGGACTATCACTCTA 59.986 40.741 1.85 0.00 0.00 2.43
268 269 5.896678 ACATGCTCTTAAGGACTATCACTCT 59.103 40.000 1.85 0.00 0.00 3.24
269 270 5.982516 CACATGCTCTTAAGGACTATCACTC 59.017 44.000 1.85 0.00 0.00 3.51
270 271 5.683509 GCACATGCTCTTAAGGACTATCACT 60.684 44.000 1.85 0.00 38.21 3.41
271 272 4.509600 GCACATGCTCTTAAGGACTATCAC 59.490 45.833 1.85 0.00 38.21 3.06
272 273 4.443457 GGCACATGCTCTTAAGGACTATCA 60.443 45.833 1.85 0.00 41.70 2.15
273 274 4.061596 GGCACATGCTCTTAAGGACTATC 58.938 47.826 1.85 0.00 41.70 2.08
274 275 3.713764 AGGCACATGCTCTTAAGGACTAT 59.286 43.478 1.85 0.00 41.70 2.12
275 276 3.107601 AGGCACATGCTCTTAAGGACTA 58.892 45.455 1.85 0.00 41.70 2.59
276 277 1.912043 AGGCACATGCTCTTAAGGACT 59.088 47.619 1.85 0.00 41.70 3.85
277 278 2.012673 CAGGCACATGCTCTTAAGGAC 58.987 52.381 1.85 0.00 41.70 3.85
278 279 1.908619 TCAGGCACATGCTCTTAAGGA 59.091 47.619 1.85 0.00 41.70 3.36
279 280 2.408271 TCAGGCACATGCTCTTAAGG 57.592 50.000 1.85 0.00 41.70 2.69
280 281 3.373439 GTCTTCAGGCACATGCTCTTAAG 59.627 47.826 3.48 0.00 41.70 1.85
281 282 3.008375 AGTCTTCAGGCACATGCTCTTAA 59.992 43.478 3.48 0.00 41.70 1.85
282 283 2.568956 AGTCTTCAGGCACATGCTCTTA 59.431 45.455 3.48 0.00 41.70 2.10
283 284 1.350351 AGTCTTCAGGCACATGCTCTT 59.650 47.619 3.48 0.00 41.70 2.85
284 285 0.982704 AGTCTTCAGGCACATGCTCT 59.017 50.000 3.48 0.00 41.70 4.09
285 286 1.736681 GAAGTCTTCAGGCACATGCTC 59.263 52.381 7.76 0.00 41.70 4.26
286 287 1.350351 AGAAGTCTTCAGGCACATGCT 59.650 47.619 14.97 0.00 41.70 3.79
287 288 1.736681 GAGAAGTCTTCAGGCACATGC 59.263 52.381 14.97 0.00 41.14 4.06
288 289 3.049708 TGAGAAGTCTTCAGGCACATG 57.950 47.619 14.97 0.00 0.00 3.21
289 290 3.406764 GTTGAGAAGTCTTCAGGCACAT 58.593 45.455 14.97 0.00 0.00 3.21
290 291 2.485479 GGTTGAGAAGTCTTCAGGCACA 60.485 50.000 14.97 4.36 0.00 4.57
291 292 2.147150 GGTTGAGAAGTCTTCAGGCAC 58.853 52.381 14.97 5.70 0.00 5.01
292 293 1.270305 CGGTTGAGAAGTCTTCAGGCA 60.270 52.381 14.97 6.98 0.00 4.75
293 294 1.270358 ACGGTTGAGAAGTCTTCAGGC 60.270 52.381 14.97 4.56 0.00 4.85
294 295 2.035961 TGACGGTTGAGAAGTCTTCAGG 59.964 50.000 14.97 0.30 36.01 3.86
295 296 3.371102 TGACGGTTGAGAAGTCTTCAG 57.629 47.619 14.97 1.96 36.01 3.02
296 297 4.765339 TCTATGACGGTTGAGAAGTCTTCA 59.235 41.667 14.97 0.00 36.01 3.02
297 298 5.096849 GTCTATGACGGTTGAGAAGTCTTC 58.903 45.833 4.26 4.26 36.01 2.87
298 299 4.523173 TGTCTATGACGGTTGAGAAGTCTT 59.477 41.667 0.00 0.00 34.95 3.01
299 300 4.079970 TGTCTATGACGGTTGAGAAGTCT 58.920 43.478 0.00 0.00 34.95 3.24
300 301 4.436242 TGTCTATGACGGTTGAGAAGTC 57.564 45.455 0.00 0.00 34.95 3.01
301 302 4.322049 CCTTGTCTATGACGGTTGAGAAGT 60.322 45.833 0.00 0.00 34.95 3.01
302 303 4.177026 CCTTGTCTATGACGGTTGAGAAG 58.823 47.826 0.00 0.00 34.95 2.85
303 304 3.576982 ACCTTGTCTATGACGGTTGAGAA 59.423 43.478 0.00 0.00 34.95 2.87
304 305 3.162666 ACCTTGTCTATGACGGTTGAGA 58.837 45.455 0.00 0.00 34.95 3.27
305 306 3.056821 TGACCTTGTCTATGACGGTTGAG 60.057 47.826 0.00 0.00 34.95 3.02
306 307 2.894765 TGACCTTGTCTATGACGGTTGA 59.105 45.455 0.00 0.00 34.95 3.18
307 308 3.313012 TGACCTTGTCTATGACGGTTG 57.687 47.619 0.00 0.00 34.95 3.77
308 309 3.660865 GTTGACCTTGTCTATGACGGTT 58.339 45.455 0.00 0.00 34.95 4.44
309 310 2.352421 CGTTGACCTTGTCTATGACGGT 60.352 50.000 0.00 0.00 34.95 4.83
310 311 2.259618 CGTTGACCTTGTCTATGACGG 58.740 52.381 0.00 0.00 34.95 4.79
311 312 2.259618 CCGTTGACCTTGTCTATGACG 58.740 52.381 0.47 0.00 34.95 4.35
312 313 2.000447 GCCGTTGACCTTGTCTATGAC 59.000 52.381 0.47 0.00 33.15 3.06
313 314 1.621317 TGCCGTTGACCTTGTCTATGA 59.379 47.619 0.47 0.00 33.15 2.15
314 315 2.093306 TGCCGTTGACCTTGTCTATG 57.907 50.000 0.00 0.00 33.15 2.23
315 316 2.423577 GTTGCCGTTGACCTTGTCTAT 58.576 47.619 0.00 0.00 33.15 1.98
316 317 1.870580 CGTTGCCGTTGACCTTGTCTA 60.871 52.381 0.00 0.00 33.15 2.59
317 318 1.157870 CGTTGCCGTTGACCTTGTCT 61.158 55.000 0.00 0.00 33.15 3.41
318 319 1.278637 CGTTGCCGTTGACCTTGTC 59.721 57.895 0.00 0.00 0.00 3.18
319 320 2.184167 CCGTTGCCGTTGACCTTGT 61.184 57.895 0.00 0.00 0.00 3.16
320 321 2.637025 CCGTTGCCGTTGACCTTG 59.363 61.111 0.00 0.00 0.00 3.61
321 322 3.284449 GCCGTTGCCGTTGACCTT 61.284 61.111 0.00 0.00 0.00 3.50
324 325 4.364409 GTCGCCGTTGCCGTTGAC 62.364 66.667 0.00 0.00 31.94 3.18
325 326 4.893601 TGTCGCCGTTGCCGTTGA 62.894 61.111 0.00 0.00 0.00 3.18
326 327 3.722295 ATGTCGCCGTTGCCGTTG 61.722 61.111 0.00 0.00 0.00 4.10
327 328 3.722295 CATGTCGCCGTTGCCGTT 61.722 61.111 0.00 0.00 0.00 4.44
328 329 4.980805 ACATGTCGCCGTTGCCGT 62.981 61.111 0.00 0.00 0.00 5.68
329 330 4.147322 GACATGTCGCCGTTGCCG 62.147 66.667 10.69 0.00 0.00 5.69
330 331 4.147322 CGACATGTCGCCGTTGCC 62.147 66.667 32.93 0.02 46.50 4.52
354 355 4.742201 ACTACTGCTGCCGCCACG 62.742 66.667 0.00 0.00 34.43 4.94
355 356 3.121030 CACTACTGCTGCCGCCAC 61.121 66.667 0.00 0.00 34.43 5.01
356 357 4.393155 CCACTACTGCTGCCGCCA 62.393 66.667 0.00 0.00 34.43 5.69
357 358 3.901797 AACCACTACTGCTGCCGCC 62.902 63.158 0.00 0.00 34.43 6.13
358 359 1.515521 AAAACCACTACTGCTGCCGC 61.516 55.000 0.00 0.00 0.00 6.53
359 360 0.951558 AAAAACCACTACTGCTGCCG 59.048 50.000 0.00 0.00 0.00 5.69
360 361 1.069227 CGAAAAACCACTACTGCTGCC 60.069 52.381 0.00 0.00 0.00 4.85
361 362 1.069227 CCGAAAAACCACTACTGCTGC 60.069 52.381 0.00 0.00 0.00 5.25
362 363 2.032030 CACCGAAAAACCACTACTGCTG 60.032 50.000 0.00 0.00 0.00 4.41
363 364 2.218603 CACCGAAAAACCACTACTGCT 58.781 47.619 0.00 0.00 0.00 4.24
364 365 1.265905 CCACCGAAAAACCACTACTGC 59.734 52.381 0.00 0.00 0.00 4.40
365 366 2.567985 ACCACCGAAAAACCACTACTG 58.432 47.619 0.00 0.00 0.00 2.74
366 367 3.286329 AACCACCGAAAAACCACTACT 57.714 42.857 0.00 0.00 0.00 2.57
367 368 4.374843 AAAACCACCGAAAAACCACTAC 57.625 40.909 0.00 0.00 0.00 2.73
368 369 5.435291 TCTAAAACCACCGAAAAACCACTA 58.565 37.500 0.00 0.00 0.00 2.74
369 370 4.271661 TCTAAAACCACCGAAAAACCACT 58.728 39.130 0.00 0.00 0.00 4.00
370 371 4.635833 TCTAAAACCACCGAAAAACCAC 57.364 40.909 0.00 0.00 0.00 4.16
371 372 5.595133 AGATTCTAAAACCACCGAAAAACCA 59.405 36.000 0.00 0.00 0.00 3.67
372 373 6.080648 AGATTCTAAAACCACCGAAAAACC 57.919 37.500 0.00 0.00 0.00 3.27
373 374 5.849604 CGAGATTCTAAAACCACCGAAAAAC 59.150 40.000 0.00 0.00 0.00 2.43
374 375 5.759273 TCGAGATTCTAAAACCACCGAAAAA 59.241 36.000 0.00 0.00 0.00 1.94
375 376 5.299148 TCGAGATTCTAAAACCACCGAAAA 58.701 37.500 0.00 0.00 0.00 2.29
376 377 4.885413 TCGAGATTCTAAAACCACCGAAA 58.115 39.130 0.00 0.00 0.00 3.46
377 378 4.524316 TCGAGATTCTAAAACCACCGAA 57.476 40.909 0.00 0.00 0.00 4.30
378 379 4.081862 ACATCGAGATTCTAAAACCACCGA 60.082 41.667 0.00 0.00 0.00 4.69
379 380 4.181578 ACATCGAGATTCTAAAACCACCG 58.818 43.478 0.00 0.00 0.00 4.94
380 381 7.605410 TTTACATCGAGATTCTAAAACCACC 57.395 36.000 0.00 0.00 0.00 4.61
414 415 4.378459 CCGGAAGTACAAAGCATCTCAAAC 60.378 45.833 0.00 0.00 0.00 2.93
423 424 5.428496 AAAGTTTACCGGAAGTACAAAGC 57.572 39.130 9.46 0.00 0.00 3.51
1191 1196 7.286546 TCTCATGGAATTAACCAAAGTGAAACA 59.713 33.333 0.00 0.00 43.47 2.83
1192 1197 7.657336 TCTCATGGAATTAACCAAAGTGAAAC 58.343 34.615 0.00 0.00 43.47 2.78
1193 1198 7.831691 TCTCATGGAATTAACCAAAGTGAAA 57.168 32.000 0.00 0.00 43.47 2.69
1234 1240 2.172483 GAGGCCGCAGTTCAGGAGAA 62.172 60.000 0.00 0.00 0.00 2.87
1235 1241 2.604686 AGGCCGCAGTTCAGGAGA 60.605 61.111 0.00 0.00 0.00 3.71
1241 1247 2.435059 GAGTGGAGGCCGCAGTTC 60.435 66.667 9.31 0.00 36.32 3.01
1246 1252 2.125350 CTGAAGAGTGGAGGCCGC 60.125 66.667 0.00 0.00 0.00 6.53
1251 1257 2.099431 GCAGCGCTGAAGAGTGGAG 61.099 63.158 40.21 10.82 0.00 3.86
1253 1259 2.047465 AGCAGCGCTGAAGAGTGG 60.047 61.111 40.21 12.45 37.57 4.00
1442 1448 1.610522 GAAGCACACCAAAGAGCATGT 59.389 47.619 0.00 0.00 0.00 3.21
1476 1482 3.320256 AGAGACAGCATATCAGAATCGCA 59.680 43.478 0.00 0.00 0.00 5.10
1500 1506 7.038587 TCAGTATTCAGTAAGAAAAGCAGGGTA 60.039 37.037 0.00 0.00 40.22 3.69
1512 1518 8.821894 GGCAAAGATAACTCAGTATTCAGTAAG 58.178 37.037 0.00 0.00 0.00 2.34
1547 1553 1.002468 CACCAACGAGTCCAGCAAAAG 60.002 52.381 0.00 0.00 0.00 2.27
1595 1601 3.418995 AGAGCAGCATCAACAAAGATGT 58.581 40.909 0.00 0.00 45.58 3.06
1644 1650 3.721035 CCGATGCAGTTCTGATGATACA 58.279 45.455 3.84 0.00 0.00 2.29
1671 1677 8.410912 AGCCGGTTAATTAAACTATTGGATTTC 58.589 33.333 11.37 0.00 38.23 2.17
1680 1686 7.414319 CCGAATTTCAGCCGGTTAATTAAACTA 60.414 37.037 11.37 0.00 38.23 2.24
1737 1743 0.035630 AGCCAGTCATGAGAAGGCAC 60.036 55.000 26.03 3.51 45.05 5.01
1754 1761 0.831711 ACCCCCACCACAAAATGAGC 60.832 55.000 0.00 0.00 0.00 4.26
1976 1983 8.274322 TGGATCAAGTTATGTAACCATGAGATT 58.726 33.333 0.00 0.00 36.57 2.40
1990 1997 5.527582 GGTGCTTCGTAATGGATCAAGTTAT 59.472 40.000 0.00 0.00 0.00 1.89
1991 1998 4.873827 GGTGCTTCGTAATGGATCAAGTTA 59.126 41.667 0.00 0.00 0.00 2.24
2285 2330 9.868277 GTTGTCTCTAGAAGTAGTACTGTAGTA 57.132 37.037 5.39 0.00 0.00 1.82
2286 2331 8.373981 TGTTGTCTCTAGAAGTAGTACTGTAGT 58.626 37.037 5.39 0.22 0.00 2.73
2287 2332 8.658609 GTGTTGTCTCTAGAAGTAGTACTGTAG 58.341 40.741 5.39 8.36 0.00 2.74
2288 2333 8.373981 AGTGTTGTCTCTAGAAGTAGTACTGTA 58.626 37.037 5.39 0.00 0.00 2.74
2289 2334 7.225725 AGTGTTGTCTCTAGAAGTAGTACTGT 58.774 38.462 5.39 0.00 0.00 3.55
2290 2335 7.675962 AGTGTTGTCTCTAGAAGTAGTACTG 57.324 40.000 5.39 0.00 0.00 2.74
2291 2336 7.937942 TGAAGTGTTGTCTCTAGAAGTAGTACT 59.062 37.037 0.00 0.00 0.00 2.73
2292 2337 8.097078 TGAAGTGTTGTCTCTAGAAGTAGTAC 57.903 38.462 0.00 0.00 0.00 2.73
2386 2434 8.948853 TTTTACAATCGCAAGTTCTTAATCAG 57.051 30.769 0.00 0.00 39.48 2.90
2711 2955 5.292101 GTCTTACAATGCATACTGACCTGAC 59.708 44.000 0.00 2.01 0.00 3.51
3066 3310 8.827177 TGTAGATTTCACTGAAACGTATTTCT 57.173 30.769 6.35 7.20 44.02 2.52
3078 3322 8.733458 TCTTCATTTTGGATGTAGATTTCACTG 58.267 33.333 0.00 0.00 0.00 3.66
3118 3362 7.610865 CAGGATATAATTTCCACTCCTCTCTC 58.389 42.308 0.00 0.00 35.59 3.20
3263 3507 0.256752 TGCTCCCATGGAAGATGGTG 59.743 55.000 15.22 0.00 37.48 4.17
3277 3521 5.057149 CCATGTAATACAGTAACCTGCTCC 58.943 45.833 0.00 0.00 42.81 4.70
3322 3567 6.754675 AGTACCAAAAATGGTTTTCGACTTTG 59.245 34.615 5.73 0.00 42.99 2.77
3354 3724 5.869344 TGAACTATCTCAACATCCAGTTTCG 59.131 40.000 0.00 0.00 38.74 3.46
3423 3793 4.794655 GCTCCTAGATTCTCGTGGTCAATC 60.795 50.000 0.00 0.00 0.00 2.67
3492 3864 9.113838 TCTTATAAACCAGAATCTGCAATCTTC 57.886 33.333 4.40 0.00 0.00 2.87
3588 3960 1.618343 ACCAACATAAACCAGCCTTGC 59.382 47.619 0.00 0.00 0.00 4.01
3740 4112 6.540914 CGGCAAATATTTTACAAGAGGGACTA 59.459 38.462 0.00 0.00 41.55 2.59
4005 4378 2.128771 ACCAAACAACACAGACTGCT 57.871 45.000 1.25 0.00 0.00 4.24
4006 4379 3.625764 TCTTACCAAACAACACAGACTGC 59.374 43.478 1.25 0.00 0.00 4.40
4007 4380 5.006746 GTCTCTTACCAAACAACACAGACTG 59.993 44.000 0.00 0.00 0.00 3.51
4008 4381 5.116882 GTCTCTTACCAAACAACACAGACT 58.883 41.667 0.00 0.00 0.00 3.24
4453 4826 7.125811 AGCTCCTACAACAGGTAATCAAGATAA 59.874 37.037 0.00 0.00 45.71 1.75
4898 5272 4.547406 ACCAACGTACAGAAAGAAAAGC 57.453 40.909 0.00 0.00 0.00 3.51
5091 5465 6.892456 ACATAGAGGTCTCATAACAGACAGAA 59.108 38.462 3.17 0.00 44.18 3.02
5165 5539 3.071892 CCCCTACATCCGGCATTTAGTTA 59.928 47.826 0.00 0.00 0.00 2.24
5485 5924 2.962421 GGAAACCACCCTGAAATCAACA 59.038 45.455 0.00 0.00 0.00 3.33
5503 5942 5.637006 ACTTTGCATTGTATTTAGCGGAA 57.363 34.783 0.00 0.00 0.00 4.30
5505 5944 5.741982 GGTAACTTTGCATTGTATTTAGCGG 59.258 40.000 0.00 0.00 0.00 5.52
5569 6008 1.430228 GCATGTGATGATGCGTGCA 59.570 52.632 0.00 0.00 44.44 4.57
5648 6107 5.236478 ACAAGGAGTTGTACACAAATTCTCG 59.764 40.000 3.97 0.00 45.48 4.04
5726 6185 3.096092 GGCAGTGGTGGATAATTTTCCA 58.904 45.455 13.03 13.03 43.56 3.53
5835 6294 7.824289 TCACCAAATTCACTTAGTTCCATAGAG 59.176 37.037 0.00 0.00 0.00 2.43
5836 6295 7.685481 TCACCAAATTCACTTAGTTCCATAGA 58.315 34.615 0.00 0.00 0.00 1.98
5837 6296 7.921786 TCACCAAATTCACTTAGTTCCATAG 57.078 36.000 0.00 0.00 0.00 2.23
5838 6297 7.942341 ACTTCACCAAATTCACTTAGTTCCATA 59.058 33.333 0.00 0.00 0.00 2.74
5840 6299 6.039270 CACTTCACCAAATTCACTTAGTTCCA 59.961 38.462 0.00 0.00 0.00 3.53
5841 6300 6.262273 TCACTTCACCAAATTCACTTAGTTCC 59.738 38.462 0.00 0.00 0.00 3.62
5842 6301 7.259290 TCACTTCACCAAATTCACTTAGTTC 57.741 36.000 0.00 0.00 0.00 3.01
5843 6302 7.639113 TTCACTTCACCAAATTCACTTAGTT 57.361 32.000 0.00 0.00 0.00 2.24
5844 6303 7.639113 TTTCACTTCACCAAATTCACTTAGT 57.361 32.000 0.00 0.00 0.00 2.24
5869 6331 6.151648 GGACATCTCTGTTCCATCAAAATCAA 59.848 38.462 0.00 0.00 35.14 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.