Multiple sequence alignment - TraesCS5D01G281400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G281400 chr5D 100.000 6198 0 0 1 6198 382504620 382510817 0.000000e+00 11446.0
1 TraesCS5D01G281400 chr5D 97.459 1810 22 8 3475 5264 383230894 383232699 0.000000e+00 3066.0
2 TraesCS5D01G281400 chr5D 95.745 1786 42 13 385 2144 383227938 383229715 0.000000e+00 2846.0
3 TraesCS5D01G281400 chr5D 98.147 1187 13 2 2176 3354 383229713 383230898 0.000000e+00 2061.0
4 TraesCS5D01G281400 chr5D 96.561 378 13 0 1 378 487589471 487589848 1.470000e-175 627.0
5 TraesCS5D01G281400 chr5D 99.281 139 1 0 6059 6197 382512384 382512246 1.030000e-62 252.0
6 TraesCS5D01G281400 chr5D 97.143 140 4 0 6059 6198 76002875 76002736 2.890000e-58 237.0
7 TraesCS5D01G281400 chr5D 95.804 143 6 0 6056 6198 76000699 76000841 1.340000e-56 231.0
8 TraesCS5D01G281400 chr5B 94.341 1979 74 18 460 2406 458932391 458934363 0.000000e+00 3000.0
9 TraesCS5D01G281400 chr5B 95.419 1768 46 15 3499 5264 458934980 458936714 0.000000e+00 2784.0
10 TraesCS5D01G281400 chr5B 98.086 418 8 0 2419 2836 458934572 458934989 0.000000e+00 728.0
11 TraesCS5D01G281400 chr5B 94.406 143 8 0 3342 3484 340715843 340715701 2.910000e-53 220.0
12 TraesCS5D01G281400 chr5B 83.206 131 11 3 3721 3851 446561089 446560970 6.570000e-20 110.0
13 TraesCS5D01G281400 chr1D 97.362 796 21 0 5263 6058 415689028 415688233 0.000000e+00 1354.0
14 TraesCS5D01G281400 chr1D 94.444 378 20 1 1 378 324703659 324703283 1.160000e-161 580.0
15 TraesCS5D01G281400 chr1D 93.122 378 26 0 1 378 310855768 310856145 7.020000e-154 555.0
16 TraesCS5D01G281400 chr1D 97.163 141 4 0 6058 6198 5433703 5433843 8.030000e-59 239.0
17 TraesCS5D01G281400 chr1D 97.143 140 4 0 6059 6198 366192451 366192590 2.890000e-58 237.0
18 TraesCS5D01G281400 chr1D 97.778 135 3 0 3350 3484 469018685 469018551 3.740000e-57 233.0
19 TraesCS5D01G281400 chr1D 96.429 140 5 0 6059 6198 366194160 366194021 1.340000e-56 231.0
20 TraesCS5D01G281400 chr1D 97.037 135 4 0 3343 3477 194139763 194139897 1.740000e-55 228.0
21 TraesCS5D01G281400 chrUn 97.623 589 9 2 5263 5851 328254740 328255323 0.000000e+00 1005.0
22 TraesCS5D01G281400 chrUn 98.438 128 2 0 5931 6058 328255325 328255452 6.250000e-55 226.0
23 TraesCS5D01G281400 chrUn 86.765 68 5 2 388 455 270736012 270735949 8.620000e-09 73.1
24 TraesCS5D01G281400 chrUn 86.765 68 5 2 388 455 282194926 282194989 8.620000e-09 73.1
25 TraesCS5D01G281400 chr7A 97.623 589 9 2 5263 5851 575610544 575611127 0.000000e+00 1005.0
26 TraesCS5D01G281400 chr7A 97.059 136 4 0 3350 3485 442265882 442265747 4.830000e-56 230.0
27 TraesCS5D01G281400 chr7A 98.438 128 2 0 5931 6058 575611129 575611256 6.250000e-55 226.0
28 TraesCS5D01G281400 chr7A 94.161 137 8 0 6059 6195 83274840 83274704 6.300000e-50 209.0
29 TraesCS5D01G281400 chr7A 86.765 68 5 2 388 455 232022562 232022625 8.620000e-09 73.1
30 TraesCS5D01G281400 chr7A 86.765 68 5 2 388 455 232056105 232056168 8.620000e-09 73.1
31 TraesCS5D01G281400 chr7A 94.872 39 2 0 390 428 736072615 736072653 1.870000e-05 62.1
32 TraesCS5D01G281400 chr7A 94.872 39 2 0 390 428 736314668 736314706 1.870000e-05 62.1
33 TraesCS5D01G281400 chr3B 89.916 595 40 11 5262 5852 681517331 681516753 0.000000e+00 749.0
34 TraesCS5D01G281400 chr3B 94.444 126 6 1 5934 6058 681516751 681516626 6.340000e-45 193.0
35 TraesCS5D01G281400 chr3A 89.865 592 41 13 5263 5852 640673715 640673141 0.000000e+00 743.0
36 TraesCS5D01G281400 chr3A 88.815 599 42 16 5263 5852 640744816 640744234 0.000000e+00 712.0
37 TraesCS5D01G281400 chr3A 93.651 126 7 1 5934 6058 640673139 640673014 2.950000e-43 187.0
38 TraesCS5D01G281400 chr3A 93.651 126 7 1 5934 6058 640744232 640744107 2.950000e-43 187.0
39 TraesCS5D01G281400 chr3A 89.320 103 8 3 5841 5942 710277974 710277874 6.520000e-25 126.0
40 TraesCS5D01G281400 chr2D 93.158 380 21 3 1 377 367987629 367987252 2.520000e-153 553.0
41 TraesCS5D01G281400 chr2D 92.368 380 25 2 1 377 50496018 50496396 7.070000e-149 538.0
42 TraesCS5D01G281400 chr2D 91.601 381 29 1 1 378 50520998 50521378 1.980000e-144 523.0
43 TraesCS5D01G281400 chr2D 96.350 137 5 0 3351 3487 650880038 650879902 6.250000e-55 226.0
44 TraesCS5D01G281400 chr2D 95.349 86 4 0 5849 5934 643235908 643235823 3.010000e-28 137.0
45 TraesCS5D01G281400 chr2D 93.478 92 5 1 5846 5936 534925461 534925552 1.080000e-27 135.0
46 TraesCS5D01G281400 chr2D 95.349 43 1 1 5255 5296 349603358 349603400 4.010000e-07 67.6
47 TraesCS5D01G281400 chr7D 92.408 382 25 2 1 378 607548088 607547707 5.470000e-150 542.0
48 TraesCS5D01G281400 chr3D 92.612 379 24 4 3 378 44879444 44879067 5.470000e-150 542.0
49 TraesCS5D01G281400 chr3D 98.485 132 2 0 3346 3477 614251087 614251218 3.740000e-57 233.0
50 TraesCS5D01G281400 chr3D 95.745 141 5 1 3347 3486 496172752 496172892 6.250000e-55 226.0
51 TraesCS5D01G281400 chr3D 91.667 96 6 2 5838 5933 436676891 436676984 1.400000e-26 132.0
52 TraesCS5D01G281400 chr2B 92.308 377 27 2 3 378 240298630 240299005 9.150000e-148 534.0
53 TraesCS5D01G281400 chr2B 80.899 89 12 3 387 474 769054075 769054159 1.440000e-06 65.8
54 TraesCS5D01G281400 chr1B 95.833 144 5 1 3342 3484 623731976 623732119 1.340000e-56 231.0
55 TraesCS5D01G281400 chr1B 94.318 88 5 0 5849 5936 181305287 181305374 1.080000e-27 135.0
56 TraesCS5D01G281400 chr1B 94.318 88 5 0 5849 5936 679324605 679324518 1.080000e-27 135.0
57 TraesCS5D01G281400 chr4B 91.925 161 10 3 3319 3477 158279539 158279380 8.090000e-54 222.0
58 TraesCS5D01G281400 chr1A 94.286 140 7 1 6059 6198 386393492 386393354 4.870000e-51 213.0
59 TraesCS5D01G281400 chr1A 93.478 138 8 1 6059 6196 386384524 386384660 2.930000e-48 204.0
60 TraesCS5D01G281400 chr6D 95.506 89 4 0 5846 5934 196357996 196357908 6.480000e-30 143.0
61 TraesCS5D01G281400 chr7B 88.288 111 10 3 5827 5935 196962954 196962845 5.040000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G281400 chr5D 382504620 382510817 6197 False 11446.000000 11446 100.000000 1 6198 1 chr5D.!!$F2 6197
1 TraesCS5D01G281400 chr5D 383227938 383232699 4761 False 2657.666667 3066 97.117000 385 5264 3 chr5D.!!$F4 4879
2 TraesCS5D01G281400 chr5B 458932391 458936714 4323 False 2170.666667 3000 95.948667 460 5264 3 chr5B.!!$F1 4804
3 TraesCS5D01G281400 chr1D 415688233 415689028 795 True 1354.000000 1354 97.362000 5263 6058 1 chr1D.!!$R3 795
4 TraesCS5D01G281400 chrUn 328254740 328255452 712 False 615.500000 1005 98.030500 5263 6058 2 chrUn.!!$F2 795
5 TraesCS5D01G281400 chr7A 575610544 575611256 712 False 615.500000 1005 98.030500 5263 6058 2 chr7A.!!$F5 795
6 TraesCS5D01G281400 chr3B 681516626 681517331 705 True 471.000000 749 92.180000 5262 6058 2 chr3B.!!$R1 796
7 TraesCS5D01G281400 chr3A 640673014 640673715 701 True 465.000000 743 91.758000 5263 6058 2 chr3A.!!$R2 795
8 TraesCS5D01G281400 chr3A 640744107 640744816 709 True 449.500000 712 91.233000 5263 6058 2 chr3A.!!$R3 795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 316 0.033228 CAAATGCAAAACTGGGCGGA 59.967 50.000 0.0 0.0 0.00 5.54 F
316 317 0.033366 AAATGCAAAACTGGGCGGAC 59.967 50.000 0.0 0.0 0.00 4.79 F
352 353 0.101579 ACCCAAACGGACAAAAAGCG 59.898 50.000 0.0 0.0 34.64 4.68 F
354 355 0.382515 CCAAACGGACAAAAAGCGGA 59.617 50.000 0.0 0.0 0.00 5.54 F
356 357 1.096416 AAACGGACAAAAAGCGGACA 58.904 45.000 0.0 0.0 0.00 4.02 F
362 363 1.451651 GACAAAAAGCGGACAAATGCG 59.548 47.619 0.0 0.0 43.57 4.73 F
383 384 1.566018 CGTCGGTTTGGGTCTTGCTC 61.566 60.000 0.0 0.0 0.00 4.26 F
1367 1395 1.611673 CCCCTGCTCGTCAACATTTCT 60.612 52.381 0.0 0.0 0.00 2.52 F
3365 3601 0.406750 TTGGTACTCCCTCCGTCTCA 59.593 55.000 0.0 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1367 1395 0.318120 TGTTGAGAGAGCGCATGTCA 59.682 50.000 11.47 9.46 0.00 3.58 R
1728 1756 1.480312 CCCCCACCACAAAATGAGTCA 60.480 52.381 0.00 0.00 0.00 3.41 R
2021 2049 5.605534 CTCACTACAGGAATACCAGGAATG 58.394 45.833 0.00 0.00 38.94 2.67 R
2391 2431 8.722342 TTTTACAATCGCAAGTTCTTAATCAC 57.278 30.769 0.00 0.00 39.48 3.06 R
2723 2959 6.531948 ACAAAGAAGTCTTACGATGCATACTC 59.468 38.462 0.00 0.00 34.61 2.59 R
3071 3307 8.025243 TGTAGATTTCACTCAAACGTATTTCC 57.975 34.615 0.00 0.00 0.00 3.13 R
3083 3319 8.950210 TCTTCATTTTGGATGTAGATTTCACTC 58.050 33.333 0.00 0.00 0.00 3.51 R
3462 3698 0.690077 AATGGTACTCCCTCCGTCCC 60.690 60.000 0.00 0.00 0.00 4.46 R
6062 6330 0.994247 AGCAATGTCACCTGATCCCA 59.006 50.000 0.00 0.00 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.308068 ACGAGTGATCTATGGCGTCG 59.692 55.000 0.00 0.00 0.00 5.12
20 21 0.586802 CGAGTGATCTATGGCGTCGA 59.413 55.000 0.00 0.00 0.00 4.20
21 22 1.399087 CGAGTGATCTATGGCGTCGAG 60.399 57.143 0.00 0.00 0.00 4.04
22 23 0.955178 AGTGATCTATGGCGTCGAGG 59.045 55.000 0.00 0.00 0.00 4.63
23 24 0.039074 GTGATCTATGGCGTCGAGGG 60.039 60.000 7.31 0.00 0.00 4.30
24 25 1.080434 GATCTATGGCGTCGAGGGC 60.080 63.158 23.15 23.15 0.00 5.19
31 32 2.125106 GCGTCGAGGGCCATCTTT 60.125 61.111 16.60 0.00 0.00 2.52
32 33 1.745489 GCGTCGAGGGCCATCTTTT 60.745 57.895 16.60 0.00 0.00 2.27
33 34 1.305930 GCGTCGAGGGCCATCTTTTT 61.306 55.000 16.60 0.00 0.00 1.94
49 50 2.645730 TTTTTGTATGCCGGCATGAC 57.354 45.000 44.59 34.88 37.82 3.06
50 51 0.814457 TTTTGTATGCCGGCATGACC 59.186 50.000 44.59 32.10 37.82 4.02
51 52 0.322906 TTTGTATGCCGGCATGACCA 60.323 50.000 44.59 33.96 39.03 4.02
52 53 1.029408 TTGTATGCCGGCATGACCAC 61.029 55.000 44.59 34.91 39.03 4.16
53 54 2.203001 TATGCCGGCATGACCACG 60.203 61.111 44.59 0.00 39.03 4.94
57 58 4.838152 CCGGCATGACCACGGGAG 62.838 72.222 0.00 0.00 43.69 4.30
77 78 3.849953 GCGATGGCGTGGTCGAAC 61.850 66.667 0.00 0.00 40.11 3.95
78 79 2.126071 CGATGGCGTGGTCGAACT 60.126 61.111 0.33 0.00 40.11 3.01
79 80 2.158959 CGATGGCGTGGTCGAACTC 61.159 63.158 0.33 0.00 40.11 3.01
80 81 1.080093 GATGGCGTGGTCGAACTCA 60.080 57.895 0.33 0.00 39.71 3.41
81 82 1.352156 GATGGCGTGGTCGAACTCAC 61.352 60.000 0.33 3.39 39.71 3.51
85 86 4.240049 GTGGTCGAACTCACGTCC 57.760 61.111 0.33 0.00 40.60 4.79
86 87 1.372623 GTGGTCGAACTCACGTCCC 60.373 63.158 0.33 0.00 39.79 4.46
87 88 1.829096 TGGTCGAACTCACGTCCCA 60.829 57.895 0.33 0.00 39.79 4.37
88 89 1.183030 TGGTCGAACTCACGTCCCAT 61.183 55.000 0.33 0.00 39.79 4.00
89 90 0.458025 GGTCGAACTCACGTCCCATC 60.458 60.000 0.00 0.00 35.99 3.51
90 91 0.242825 GTCGAACTCACGTCCCATCA 59.757 55.000 0.00 0.00 34.70 3.07
91 92 1.135083 GTCGAACTCACGTCCCATCAT 60.135 52.381 0.00 0.00 34.70 2.45
92 93 1.548719 TCGAACTCACGTCCCATCATT 59.451 47.619 0.00 0.00 34.70 2.57
93 94 2.028476 TCGAACTCACGTCCCATCATTT 60.028 45.455 0.00 0.00 34.70 2.32
94 95 2.742053 CGAACTCACGTCCCATCATTTT 59.258 45.455 0.00 0.00 0.00 1.82
95 96 3.188460 CGAACTCACGTCCCATCATTTTT 59.812 43.478 0.00 0.00 0.00 1.94
111 112 1.937278 TTTTTGTGTGCTGGCATGTG 58.063 45.000 0.00 0.00 0.00 3.21
112 113 0.822811 TTTTGTGTGCTGGCATGTGT 59.177 45.000 0.00 0.00 0.00 3.72
113 114 0.102663 TTTGTGTGCTGGCATGTGTG 59.897 50.000 0.00 0.00 0.00 3.82
148 149 4.374702 GCGCCAGCGTGAACTGTG 62.375 66.667 14.22 0.00 42.09 3.66
149 150 3.716006 CGCCAGCGTGAACTGTGG 61.716 66.667 3.35 0.00 35.83 4.17
150 151 2.591715 GCCAGCGTGAACTGTGGT 60.592 61.111 0.00 0.00 35.83 4.16
151 152 1.301401 GCCAGCGTGAACTGTGGTA 60.301 57.895 0.00 0.00 35.83 3.25
152 153 0.673644 GCCAGCGTGAACTGTGGTAT 60.674 55.000 0.00 0.00 35.83 2.73
153 154 1.808411 CCAGCGTGAACTGTGGTATT 58.192 50.000 0.00 0.00 35.83 1.89
154 155 2.151202 CCAGCGTGAACTGTGGTATTT 58.849 47.619 0.00 0.00 35.83 1.40
155 156 2.552315 CCAGCGTGAACTGTGGTATTTT 59.448 45.455 0.00 0.00 35.83 1.82
156 157 3.364964 CCAGCGTGAACTGTGGTATTTTC 60.365 47.826 0.00 0.00 35.83 2.29
157 158 3.498397 CAGCGTGAACTGTGGTATTTTCT 59.502 43.478 0.00 0.00 32.78 2.52
158 159 3.498397 AGCGTGAACTGTGGTATTTTCTG 59.502 43.478 0.00 0.00 0.00 3.02
159 160 3.496884 GCGTGAACTGTGGTATTTTCTGA 59.503 43.478 0.00 0.00 0.00 3.27
160 161 4.024387 GCGTGAACTGTGGTATTTTCTGAA 60.024 41.667 0.00 0.00 0.00 3.02
161 162 5.679906 CGTGAACTGTGGTATTTTCTGAAG 58.320 41.667 0.00 0.00 0.00 3.02
162 163 5.452777 GTGAACTGTGGTATTTTCTGAAGC 58.547 41.667 0.00 0.00 0.00 3.86
163 164 4.518970 TGAACTGTGGTATTTTCTGAAGCC 59.481 41.667 0.00 0.00 0.00 4.35
164 165 3.074412 ACTGTGGTATTTTCTGAAGCCG 58.926 45.455 0.00 0.00 0.00 5.52
165 166 2.420022 CTGTGGTATTTTCTGAAGCCGG 59.580 50.000 0.00 0.00 0.00 6.13
166 167 2.224670 TGTGGTATTTTCTGAAGCCGGT 60.225 45.455 1.90 0.00 0.00 5.28
167 168 3.008157 TGTGGTATTTTCTGAAGCCGGTA 59.992 43.478 1.90 0.00 0.00 4.02
168 169 4.196971 GTGGTATTTTCTGAAGCCGGTAT 58.803 43.478 1.90 0.00 0.00 2.73
169 170 4.638865 GTGGTATTTTCTGAAGCCGGTATT 59.361 41.667 1.90 0.00 0.00 1.89
170 171 4.638421 TGGTATTTTCTGAAGCCGGTATTG 59.362 41.667 1.90 0.00 0.00 1.90
171 172 4.638865 GGTATTTTCTGAAGCCGGTATTGT 59.361 41.667 1.90 0.00 0.00 2.71
172 173 5.818857 GGTATTTTCTGAAGCCGGTATTGTA 59.181 40.000 1.90 0.00 0.00 2.41
173 174 6.485648 GGTATTTTCTGAAGCCGGTATTGTAT 59.514 38.462 1.90 0.00 0.00 2.29
174 175 5.811399 TTTTCTGAAGCCGGTATTGTATG 57.189 39.130 1.90 0.00 0.00 2.39
175 176 2.833794 TCTGAAGCCGGTATTGTATGC 58.166 47.619 1.90 0.00 0.00 3.14
176 177 1.873591 CTGAAGCCGGTATTGTATGCC 59.126 52.381 1.90 0.00 0.00 4.40
181 182 2.943653 GGTATTGTATGCCGGCGC 59.056 61.111 23.90 15.15 0.00 6.53
182 183 1.597027 GGTATTGTATGCCGGCGCT 60.597 57.895 23.90 14.61 35.36 5.92
183 184 1.569493 GTATTGTATGCCGGCGCTG 59.431 57.895 23.90 9.96 35.36 5.18
184 185 1.596752 TATTGTATGCCGGCGCTGG 60.597 57.895 31.57 31.57 35.36 4.85
201 202 3.896133 GCATGGTGCCGGCATGAG 61.896 66.667 35.23 22.88 37.42 2.90
202 203 2.124612 CATGGTGCCGGCATGAGA 60.125 61.111 35.23 17.09 0.00 3.27
203 204 2.124570 ATGGTGCCGGCATGAGAC 60.125 61.111 35.23 19.50 0.00 3.36
204 205 2.970379 ATGGTGCCGGCATGAGACA 61.970 57.895 35.23 24.88 0.00 3.41
205 206 2.124570 GGTGCCGGCATGAGACAT 60.125 61.111 35.23 0.00 0.00 3.06
206 207 2.475466 GGTGCCGGCATGAGACATG 61.475 63.158 35.23 7.29 0.00 3.21
207 208 2.124612 TGCCGGCATGAGACATGG 60.125 61.111 29.03 0.00 0.00 3.66
208 209 3.589881 GCCGGCATGAGACATGGC 61.590 66.667 24.80 22.27 40.66 4.40
209 210 2.903855 CCGGCATGAGACATGGCC 60.904 66.667 24.71 17.98 40.95 5.36
211 212 3.589881 GGCATGAGACATGGCCGC 61.590 66.667 21.83 5.42 38.48 6.53
212 213 2.515523 GCATGAGACATGGCCGCT 60.516 61.111 12.56 0.00 0.00 5.52
213 214 2.831366 GCATGAGACATGGCCGCTG 61.831 63.158 12.56 0.00 0.00 5.18
214 215 2.184830 CATGAGACATGGCCGCTGG 61.185 63.158 9.69 0.00 0.00 4.85
232 233 3.041940 CATTATCGGCCGCGGGTC 61.042 66.667 29.38 11.26 0.00 4.46
233 234 3.231736 ATTATCGGCCGCGGGTCT 61.232 61.111 29.38 5.92 0.00 3.85
234 235 2.803817 ATTATCGGCCGCGGGTCTT 61.804 57.895 29.38 3.61 0.00 3.01
235 236 2.319890 ATTATCGGCCGCGGGTCTTT 62.320 55.000 29.38 2.83 0.00 2.52
236 237 2.524951 TTATCGGCCGCGGGTCTTTT 62.525 55.000 29.38 2.48 0.00 2.27
237 238 2.524951 TATCGGCCGCGGGTCTTTTT 62.525 55.000 29.38 0.72 0.00 1.94
260 261 8.873215 TTTTATTTAAAAGTTGAATGCGGACA 57.127 26.923 0.00 0.00 32.00 4.02
261 262 9.482627 TTTTATTTAAAAGTTGAATGCGGACAT 57.517 25.926 0.00 0.00 32.92 3.06
262 263 6.949578 ATTTAAAAGTTGAATGCGGACATG 57.050 33.333 0.00 0.00 36.36 3.21
263 264 5.697473 TTAAAAGTTGAATGCGGACATGA 57.303 34.783 0.00 0.00 36.36 3.07
264 265 4.582701 AAAAGTTGAATGCGGACATGAA 57.417 36.364 0.00 0.00 36.36 2.57
265 266 4.582701 AAAGTTGAATGCGGACATGAAA 57.417 36.364 0.00 0.00 36.36 2.69
266 267 4.789012 AAGTTGAATGCGGACATGAAAT 57.211 36.364 0.00 0.00 36.36 2.17
276 277 2.408835 CATGAAATGGGTCGGCGC 59.591 61.111 0.00 0.00 41.79 6.53
277 278 3.202001 ATGAAATGGGTCGGCGCG 61.202 61.111 0.00 0.00 0.00 6.86
278 279 3.969250 ATGAAATGGGTCGGCGCGT 62.969 57.895 8.43 0.00 0.00 6.01
279 280 3.428282 GAAATGGGTCGGCGCGTT 61.428 61.111 8.43 5.61 38.23 4.84
280 281 3.661025 GAAATGGGTCGGCGCGTTG 62.661 63.158 12.62 0.00 36.96 4.10
299 300 4.001226 GCGCATTGCCCACCCAAA 62.001 61.111 0.30 0.00 37.76 3.28
300 301 2.980475 CGCATTGCCCACCCAAAT 59.020 55.556 2.41 0.00 0.00 2.32
301 302 1.448189 CGCATTGCCCACCCAAATG 60.448 57.895 2.41 0.00 0.00 2.32
302 303 1.746239 GCATTGCCCACCCAAATGC 60.746 57.895 0.00 4.07 0.00 3.56
303 304 1.678137 CATTGCCCACCCAAATGCA 59.322 52.632 0.00 0.00 0.00 3.96
304 305 0.036448 CATTGCCCACCCAAATGCAA 59.964 50.000 0.00 0.00 46.51 4.08
305 306 0.769873 ATTGCCCACCCAAATGCAAA 59.230 45.000 0.00 0.00 45.71 3.68
306 307 0.548031 TTGCCCACCCAAATGCAAAA 59.452 45.000 0.00 0.00 40.46 2.44
307 308 0.179034 TGCCCACCCAAATGCAAAAC 60.179 50.000 0.00 0.00 0.00 2.43
308 309 0.108396 GCCCACCCAAATGCAAAACT 59.892 50.000 0.00 0.00 0.00 2.66
309 310 1.881591 CCCACCCAAATGCAAAACTG 58.118 50.000 0.00 0.00 0.00 3.16
310 311 1.542987 CCCACCCAAATGCAAAACTGG 60.543 52.381 0.00 0.00 0.00 4.00
312 313 2.931246 CCCAAATGCAAAACTGGGC 58.069 52.632 11.50 0.00 42.10 5.36
313 314 0.950071 CCCAAATGCAAAACTGGGCG 60.950 55.000 11.50 0.00 42.10 6.13
314 315 0.950071 CCAAATGCAAAACTGGGCGG 60.950 55.000 0.00 0.00 0.00 6.13
315 316 0.033228 CAAATGCAAAACTGGGCGGA 59.967 50.000 0.00 0.00 0.00 5.54
316 317 0.033366 AAATGCAAAACTGGGCGGAC 59.967 50.000 0.00 0.00 0.00 4.79
317 318 2.141122 AATGCAAAACTGGGCGGACG 62.141 55.000 0.00 0.00 0.00 4.79
318 319 4.700365 GCAAAACTGGGCGGACGC 62.700 66.667 8.39 8.39 41.06 5.19
344 345 3.666253 CGGCCAACCCAAACGGAC 61.666 66.667 2.24 0.00 34.64 4.79
345 346 2.519780 GGCCAACCCAAACGGACA 60.520 61.111 0.00 0.00 34.64 4.02
346 347 2.128507 GGCCAACCCAAACGGACAA 61.129 57.895 0.00 0.00 34.64 3.18
347 348 1.677637 GGCCAACCCAAACGGACAAA 61.678 55.000 0.00 0.00 34.64 2.83
348 349 0.175989 GCCAACCCAAACGGACAAAA 59.824 50.000 0.00 0.00 34.64 2.44
349 350 1.405661 GCCAACCCAAACGGACAAAAA 60.406 47.619 0.00 0.00 34.64 1.94
350 351 2.545731 CCAACCCAAACGGACAAAAAG 58.454 47.619 0.00 0.00 34.64 2.27
351 352 1.930503 CAACCCAAACGGACAAAAAGC 59.069 47.619 0.00 0.00 34.64 3.51
352 353 0.101579 ACCCAAACGGACAAAAAGCG 59.898 50.000 0.00 0.00 34.64 4.68
353 354 0.596341 CCCAAACGGACAAAAAGCGG 60.596 55.000 0.00 0.00 0.00 5.52
354 355 0.382515 CCAAACGGACAAAAAGCGGA 59.617 50.000 0.00 0.00 0.00 5.54
355 356 1.472990 CAAACGGACAAAAAGCGGAC 58.527 50.000 0.00 0.00 0.00 4.79
356 357 1.096416 AAACGGACAAAAAGCGGACA 58.904 45.000 0.00 0.00 0.00 4.02
357 358 1.096416 AACGGACAAAAAGCGGACAA 58.904 45.000 0.00 0.00 0.00 3.18
358 359 1.096416 ACGGACAAAAAGCGGACAAA 58.904 45.000 0.00 0.00 0.00 2.83
359 360 1.679153 ACGGACAAAAAGCGGACAAAT 59.321 42.857 0.00 0.00 0.00 2.32
360 361 2.050691 CGGACAAAAAGCGGACAAATG 58.949 47.619 0.00 0.00 0.00 2.32
361 362 1.792367 GGACAAAAAGCGGACAAATGC 59.208 47.619 0.00 0.00 0.00 3.56
362 363 1.451651 GACAAAAAGCGGACAAATGCG 59.548 47.619 0.00 0.00 43.57 4.73
368 369 4.499023 CGGACAAATGCGCCGTCG 62.499 66.667 4.18 0.00 40.17 5.12
369 370 4.160635 GGACAAATGCGCCGTCGG 62.161 66.667 6.99 6.99 35.95 4.79
370 371 3.419759 GACAAATGCGCCGTCGGT 61.420 61.111 13.94 0.00 35.95 4.69
371 372 2.961669 GACAAATGCGCCGTCGGTT 61.962 57.895 13.94 0.00 35.95 4.44
372 373 2.254051 CAAATGCGCCGTCGGTTT 59.746 55.556 13.94 2.27 35.95 3.27
373 374 2.080062 CAAATGCGCCGTCGGTTTG 61.080 57.895 13.94 11.49 35.95 2.93
374 375 3.262142 AAATGCGCCGTCGGTTTGG 62.262 57.895 13.94 1.35 35.95 3.28
378 379 4.675029 CGCCGTCGGTTTGGGTCT 62.675 66.667 13.94 0.00 0.00 3.85
379 380 2.281276 GCCGTCGGTTTGGGTCTT 60.281 61.111 13.94 0.00 0.00 3.01
380 381 2.613506 GCCGTCGGTTTGGGTCTTG 61.614 63.158 13.94 0.00 0.00 3.02
381 382 2.613506 CCGTCGGTTTGGGTCTTGC 61.614 63.158 2.08 0.00 0.00 4.01
382 383 1.597027 CGTCGGTTTGGGTCTTGCT 60.597 57.895 0.00 0.00 0.00 3.91
383 384 1.566018 CGTCGGTTTGGGTCTTGCTC 61.566 60.000 0.00 0.00 0.00 4.26
390 391 3.502595 GGTTTGGGTCTTGCTCTTAGAAC 59.497 47.826 0.00 0.00 0.00 3.01
397 398 4.338682 GGTCTTGCTCTTAGAACCTCGATA 59.661 45.833 0.00 0.00 0.00 2.92
1183 1185 5.875930 CACGGACAGTGGTAATTATTTTCC 58.124 41.667 0.00 0.00 46.77 3.13
1184 1186 4.945543 ACGGACAGTGGTAATTATTTTCCC 59.054 41.667 0.00 0.00 0.00 3.97
1186 1213 5.650703 CGGACAGTGGTAATTATTTTCCCTT 59.349 40.000 0.00 0.00 0.00 3.95
1259 1287 2.730672 CTGCTCCGCTTTTCGTCGG 61.731 63.158 0.00 0.00 46.52 4.79
1344 1372 2.431771 CGACGGCCGACATGTTCA 60.432 61.111 35.90 0.00 41.76 3.18
1356 1384 3.335356 ATGTTCAGGCCCCTGCTCG 62.335 63.158 9.48 0.00 43.31 5.03
1367 1395 1.611673 CCCCTGCTCGTCAACATTTCT 60.612 52.381 0.00 0.00 0.00 2.52
1400 1428 4.098960 TCTCTCAACACAGTTTACGACCTT 59.901 41.667 0.00 0.00 0.00 3.50
1728 1756 2.093553 GCTCTCTGCCTTCTCATGACTT 60.094 50.000 0.00 0.00 35.15 3.01
1939 1967 5.491982 AGTTACATGTAGAAAGAAGCTGGG 58.508 41.667 5.56 0.00 0.00 4.45
2127 2156 1.810151 TCCACATTTGAAGCTTACGGC 59.190 47.619 0.00 0.00 42.19 5.68
2391 2431 2.665649 TGGTGTACCATAAGACAGCG 57.334 50.000 0.00 0.00 44.99 5.18
2583 2819 1.930567 GCAGATCGCATGCCATTTTT 58.069 45.000 13.15 0.00 41.79 1.94
2733 2969 9.096160 CTTGATATTATCAGGTGAGTATGCATC 57.904 37.037 0.19 0.00 40.94 3.91
3083 3319 4.939509 ATCAGAACCGGAAATACGTTTG 57.060 40.909 9.46 0.00 0.00 2.93
3123 3359 7.341769 TCCAAAATGAAGAGAAAGGTTGAAAGA 59.658 33.333 0.00 0.00 0.00 2.52
3244 3480 5.983333 ATGAAACTATTCCTGGAGTCCAT 57.017 39.130 13.56 0.00 34.49 3.41
3282 3518 8.657387 TTACCAAATTTTACCATCTTCCATGA 57.343 30.769 0.00 0.00 0.00 3.07
3328 3564 6.876789 TGGTCACTTATAAACATGTACCAGTG 59.123 38.462 0.00 7.88 31.21 3.66
3354 3590 6.068473 AGTCGAAAACCATTTTTGGTACTC 57.932 37.500 0.00 0.00 42.20 2.59
3355 3591 5.009310 AGTCGAAAACCATTTTTGGTACTCC 59.991 40.000 0.00 0.00 42.20 3.85
3356 3592 4.278919 TCGAAAACCATTTTTGGTACTCCC 59.721 41.667 0.00 0.00 42.20 4.30
3357 3593 4.279922 CGAAAACCATTTTTGGTACTCCCT 59.720 41.667 0.00 0.00 42.20 4.20
3358 3594 5.564063 CGAAAACCATTTTTGGTACTCCCTC 60.564 44.000 0.00 0.00 42.20 4.30
3359 3595 3.451402 ACCATTTTTGGTACTCCCTCC 57.549 47.619 0.00 0.00 41.04 4.30
3360 3596 2.290705 ACCATTTTTGGTACTCCCTCCG 60.291 50.000 0.00 0.00 41.04 4.63
3361 3597 2.290705 CCATTTTTGGTACTCCCTCCGT 60.291 50.000 0.00 0.00 0.00 4.69
3362 3598 2.845363 TTTTTGGTACTCCCTCCGTC 57.155 50.000 0.00 0.00 0.00 4.79
3363 3599 2.019807 TTTTGGTACTCCCTCCGTCT 57.980 50.000 0.00 0.00 0.00 4.18
3364 3600 1.553706 TTTGGTACTCCCTCCGTCTC 58.446 55.000 0.00 0.00 0.00 3.36
3365 3601 0.406750 TTGGTACTCCCTCCGTCTCA 59.593 55.000 0.00 0.00 0.00 3.27
3366 3602 0.406750 TGGTACTCCCTCCGTCTCAA 59.593 55.000 0.00 0.00 0.00 3.02
3367 3603 1.203087 TGGTACTCCCTCCGTCTCAAA 60.203 52.381 0.00 0.00 0.00 2.69
3368 3604 1.897802 GGTACTCCCTCCGTCTCAAAA 59.102 52.381 0.00 0.00 0.00 2.44
3369 3605 2.500504 GGTACTCCCTCCGTCTCAAAAT 59.499 50.000 0.00 0.00 0.00 1.82
3370 3606 3.055312 GGTACTCCCTCCGTCTCAAAATT 60.055 47.826 0.00 0.00 0.00 1.82
3371 3607 3.336138 ACTCCCTCCGTCTCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
3372 3608 2.907042 ACTCCCTCCGTCTCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
3373 3609 3.328050 ACTCCCTCCGTCTCAAAATTCTT 59.672 43.478 0.00 0.00 0.00 2.52
3374 3610 3.674997 TCCCTCCGTCTCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
3375 3611 3.072476 TCCCTCCGTCTCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
3376 3612 3.437049 CCCTCCGTCTCAAAATTCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
3377 3613 4.319177 CCTCCGTCTCAAAATTCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
3378 3614 4.757149 CCTCCGTCTCAAAATTCTTGTCTT 59.243 41.667 0.00 0.00 0.00 3.01
3379 3615 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
3380 3616 6.091441 CCTCCGTCTCAAAATTCTTGTCTTAG 59.909 42.308 0.00 0.00 0.00 2.18
3381 3617 6.755206 TCCGTCTCAAAATTCTTGTCTTAGA 58.245 36.000 0.00 0.00 0.00 2.10
3382 3618 7.386851 TCCGTCTCAAAATTCTTGTCTTAGAT 58.613 34.615 0.00 0.00 0.00 1.98
3383 3619 7.878127 TCCGTCTCAAAATTCTTGTCTTAGATT 59.122 33.333 0.00 0.00 0.00 2.40
3384 3620 8.507249 CCGTCTCAAAATTCTTGTCTTAGATTT 58.493 33.333 0.00 0.00 0.00 2.17
3385 3621 9.322776 CGTCTCAAAATTCTTGTCTTAGATTTG 57.677 33.333 0.00 0.00 30.65 2.32
3396 3632 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
3397 3633 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
3398 3634 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
3399 3635 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
3400 3636 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
3401 3637 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
3432 3668 7.539712 ACTAAAATGTGACTTGATACATCCG 57.460 36.000 0.00 0.00 36.56 4.18
3433 3669 7.103641 ACTAAAATGTGACTTGATACATCCGT 58.896 34.615 0.00 0.00 36.56 4.69
3434 3670 8.255206 ACTAAAATGTGACTTGATACATCCGTA 58.745 33.333 0.00 0.00 36.56 4.02
3435 3671 9.261180 CTAAAATGTGACTTGATACATCCGTAT 57.739 33.333 0.00 0.00 41.16 3.06
3436 3672 8.506168 AAAATGTGACTTGATACATCCGTATT 57.494 30.769 0.00 0.00 38.48 1.89
3437 3673 8.506168 AAATGTGACTTGATACATCCGTATTT 57.494 30.769 0.00 0.00 38.48 1.40
3438 3674 9.607988 AAATGTGACTTGATACATCCGTATTTA 57.392 29.630 0.00 0.00 38.48 1.40
3439 3675 8.818141 ATGTGACTTGATACATCCGTATTTAG 57.182 34.615 0.00 0.00 38.48 1.85
3440 3676 8.002984 TGTGACTTGATACATCCGTATTTAGA 57.997 34.615 0.00 0.00 38.48 2.10
3441 3677 7.919091 TGTGACTTGATACATCCGTATTTAGAC 59.081 37.037 0.00 0.00 38.48 2.59
3442 3678 7.919091 GTGACTTGATACATCCGTATTTAGACA 59.081 37.037 0.00 0.00 38.48 3.41
3443 3679 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
3444 3680 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
3445 3681 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
3452 3688 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
3453 3689 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
3455 3691 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
3456 3692 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
3464 3700 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3465 3701 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3466 3702 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3467 3703 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3468 3704 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3469 3705 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3470 3706 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3471 3707 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3472 3708 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3473 3709 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3474 3710 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3475 3711 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3476 3712 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3477 3713 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3478 3714 0.906282 TTTGGGACGGAGGGAGTACC 60.906 60.000 0.00 0.00 42.94 3.34
3485 3721 3.390311 GGACGGAGGGAGTACCATTTATT 59.610 47.826 0.00 0.00 43.89 1.40
3578 3814 1.002251 GACCACGAGAATCTAGGAGCG 60.002 57.143 3.35 0.00 32.02 5.03
3579 3815 0.318275 CCACGAGAATCTAGGAGCGC 60.318 60.000 0.00 0.00 0.00 5.92
4016 4252 4.778534 ATTCTGGTTGTCAAGCATTCAG 57.221 40.909 17.32 6.65 38.36 3.02
4118 4354 0.767375 GAGCCTGGGCCATCTCATTA 59.233 55.000 23.22 0.00 43.17 1.90
4176 4423 4.705023 ACCTGCTACCGAAATATTTTTGCT 59.295 37.500 1.43 0.00 0.00 3.91
4391 4639 4.498682 GCAATGATGTGTTGAAGGCCTATC 60.499 45.833 5.16 3.73 0.00 2.08
4660 4915 5.105228 ACATCCTTGGCAATTGTAATCCTTG 60.105 40.000 7.40 1.48 0.00 3.61
4682 4937 4.635765 TGCCCAGAAAGATATCTGTTTTCG 59.364 41.667 5.86 3.88 44.32 3.46
4797 5052 2.093890 CTACACCATGCAGCATCCAAA 58.906 47.619 4.38 0.00 0.00 3.28
5471 5735 2.159028 TGCATATTCGATCGGGAACACA 60.159 45.455 16.41 5.01 0.00 3.72
5790 6057 1.971167 GCGGGCCATGTTGAACTGA 60.971 57.895 4.39 0.00 0.00 3.41
5876 6143 7.169982 CACCCTCTGTAAAGAAATATAAGAGCG 59.830 40.741 0.00 0.00 0.00 5.03
5937 6204 4.627611 TCTTTACGGAGGAAGTACATCG 57.372 45.455 0.00 0.00 0.00 3.84
6058 6326 3.672808 GGTCCAAGATATGCATGAGAGG 58.327 50.000 10.16 5.11 0.00 3.69
6059 6327 3.558746 GGTCCAAGATATGCATGAGAGGG 60.559 52.174 10.16 5.84 0.00 4.30
6060 6328 3.326006 GTCCAAGATATGCATGAGAGGGA 59.674 47.826 10.16 8.23 0.00 4.20
6061 6329 3.326006 TCCAAGATATGCATGAGAGGGAC 59.674 47.826 10.16 0.00 0.00 4.46
6063 6331 4.316645 CAAGATATGCATGAGAGGGACTG 58.683 47.826 10.16 0.00 41.55 3.51
6064 6332 2.905085 AGATATGCATGAGAGGGACTGG 59.095 50.000 10.16 0.00 41.55 4.00
6065 6333 1.427809 TATGCATGAGAGGGACTGGG 58.572 55.000 10.16 0.00 41.55 4.45
6066 6334 0.326904 ATGCATGAGAGGGACTGGGA 60.327 55.000 0.00 0.00 41.55 4.37
6067 6335 0.326904 TGCATGAGAGGGACTGGGAT 60.327 55.000 0.00 0.00 41.55 3.85
6068 6336 0.396060 GCATGAGAGGGACTGGGATC 59.604 60.000 0.00 0.00 41.55 3.36
6069 6337 1.798626 CATGAGAGGGACTGGGATCA 58.201 55.000 0.00 0.00 41.55 2.92
6070 6338 1.693062 CATGAGAGGGACTGGGATCAG 59.307 57.143 0.00 0.00 41.55 2.90
6071 6339 0.031716 TGAGAGGGACTGGGATCAGG 60.032 60.000 0.00 0.00 44.99 3.86
6072 6340 0.031616 GAGAGGGACTGGGATCAGGT 60.032 60.000 0.00 0.00 44.99 4.00
6073 6341 0.326048 AGAGGGACTGGGATCAGGTG 60.326 60.000 0.00 0.00 44.99 4.00
6074 6342 0.325671 GAGGGACTGGGATCAGGTGA 60.326 60.000 0.00 0.00 44.99 4.02
6075 6343 0.618968 AGGGACTGGGATCAGGTGAC 60.619 60.000 0.00 0.00 44.99 3.67
6076 6344 0.909610 GGGACTGGGATCAGGTGACA 60.910 60.000 0.00 0.00 44.99 3.58
6077 6345 1.207791 GGACTGGGATCAGGTGACAT 58.792 55.000 0.00 0.00 44.99 3.06
6078 6346 1.561542 GGACTGGGATCAGGTGACATT 59.438 52.381 0.00 0.00 44.99 2.71
6079 6347 2.636830 GACTGGGATCAGGTGACATTG 58.363 52.381 0.00 0.00 44.99 2.82
6080 6348 1.340405 ACTGGGATCAGGTGACATTGC 60.340 52.381 0.00 0.00 44.99 3.56
6081 6349 0.994247 TGGGATCAGGTGACATTGCT 59.006 50.000 0.00 0.00 0.00 3.91
6082 6350 1.355381 TGGGATCAGGTGACATTGCTT 59.645 47.619 0.00 0.00 0.00 3.91
6083 6351 2.019984 GGGATCAGGTGACATTGCTTC 58.980 52.381 0.00 0.00 0.00 3.86
6084 6352 2.618816 GGGATCAGGTGACATTGCTTCA 60.619 50.000 0.00 0.00 0.00 3.02
6085 6353 2.421424 GGATCAGGTGACATTGCTTCAC 59.579 50.000 0.00 0.02 42.35 3.18
6086 6354 1.511850 TCAGGTGACATTGCTTCACG 58.488 50.000 2.43 0.00 43.75 4.35
6087 6355 0.110056 CAGGTGACATTGCTTCACGC 60.110 55.000 2.43 0.00 43.75 5.34
6095 6363 3.337889 TGCTTCACGCAGTCACGC 61.338 61.111 0.00 0.00 45.47 5.34
6096 6364 4.077188 GCTTCACGCAGTCACGCC 62.077 66.667 0.00 0.00 41.61 5.68
6097 6365 3.767230 CTTCACGCAGTCACGCCG 61.767 66.667 0.00 0.00 41.61 6.46
6098 6366 4.578898 TTCACGCAGTCACGCCGT 62.579 61.111 0.00 0.00 41.61 5.68
6099 6367 3.196913 TTCACGCAGTCACGCCGTA 62.197 57.895 0.00 0.00 41.61 4.02
6100 6368 2.680693 TTCACGCAGTCACGCCGTAA 62.681 55.000 0.00 0.00 41.61 3.18
6101 6369 2.732094 ACGCAGTCACGCCGTAAC 60.732 61.111 0.00 0.00 29.74 2.50
6102 6370 2.731721 CGCAGTCACGCCGTAACA 60.732 61.111 0.00 0.00 0.00 2.41
6103 6371 2.092291 CGCAGTCACGCCGTAACAT 61.092 57.895 0.00 0.00 0.00 2.71
6104 6372 1.419922 GCAGTCACGCCGTAACATG 59.580 57.895 0.00 0.00 0.00 3.21
6105 6373 1.419922 CAGTCACGCCGTAACATGC 59.580 57.895 0.00 0.00 0.00 4.06
6112 6380 2.784596 CCGTAACATGCGGCTGTG 59.215 61.111 0.00 2.89 42.82 3.66
6113 6381 2.098298 CGTAACATGCGGCTGTGC 59.902 61.111 0.00 0.00 0.00 4.57
6120 6388 2.125147 TGCGGCTGTGCATCTACC 60.125 61.111 0.00 0.00 40.62 3.18
6121 6389 2.125147 GCGGCTGTGCATCTACCA 60.125 61.111 0.00 0.00 34.15 3.25
6122 6390 1.524621 GCGGCTGTGCATCTACCAT 60.525 57.895 0.00 0.00 34.15 3.55
6123 6391 1.097547 GCGGCTGTGCATCTACCATT 61.098 55.000 0.00 0.00 34.15 3.16
6124 6392 0.659427 CGGCTGTGCATCTACCATTG 59.341 55.000 0.00 0.00 0.00 2.82
6125 6393 1.743431 CGGCTGTGCATCTACCATTGA 60.743 52.381 0.00 0.00 0.00 2.57
6126 6394 2.368439 GGCTGTGCATCTACCATTGAA 58.632 47.619 0.00 0.00 0.00 2.69
6127 6395 2.357009 GGCTGTGCATCTACCATTGAAG 59.643 50.000 0.00 0.00 0.00 3.02
6128 6396 2.223433 GCTGTGCATCTACCATTGAAGC 60.223 50.000 0.00 0.00 0.00 3.86
6129 6397 3.011818 CTGTGCATCTACCATTGAAGCA 58.988 45.455 0.00 0.00 36.09 3.91
6130 6398 3.419943 TGTGCATCTACCATTGAAGCAA 58.580 40.909 0.00 0.00 39.34 3.91
6131 6399 3.825585 TGTGCATCTACCATTGAAGCAAA 59.174 39.130 0.00 0.00 39.34 3.68
6132 6400 4.280425 TGTGCATCTACCATTGAAGCAAAA 59.720 37.500 0.00 0.00 39.34 2.44
6133 6401 5.047164 TGTGCATCTACCATTGAAGCAAAAT 60.047 36.000 0.00 0.00 39.34 1.82
6134 6402 5.517770 GTGCATCTACCATTGAAGCAAAATC 59.482 40.000 0.00 0.00 39.34 2.17
6135 6403 5.419788 TGCATCTACCATTGAAGCAAAATCT 59.580 36.000 0.00 0.00 35.62 2.40
6136 6404 6.602803 TGCATCTACCATTGAAGCAAAATCTA 59.397 34.615 0.00 0.00 35.62 1.98
6137 6405 7.122501 TGCATCTACCATTGAAGCAAAATCTAA 59.877 33.333 0.00 0.00 35.62 2.10
6138 6406 7.433425 GCATCTACCATTGAAGCAAAATCTAAC 59.567 37.037 0.00 0.00 0.00 2.34
6139 6407 7.072177 TCTACCATTGAAGCAAAATCTAACG 57.928 36.000 0.00 0.00 0.00 3.18
6140 6408 5.705609 ACCATTGAAGCAAAATCTAACGT 57.294 34.783 0.00 0.00 0.00 3.99
6141 6409 5.699839 ACCATTGAAGCAAAATCTAACGTC 58.300 37.500 0.00 0.00 0.00 4.34
6142 6410 5.473504 ACCATTGAAGCAAAATCTAACGTCT 59.526 36.000 0.00 0.00 0.00 4.18
6143 6411 6.024049 CCATTGAAGCAAAATCTAACGTCTC 58.976 40.000 0.00 0.00 0.00 3.36
6144 6412 6.348458 CCATTGAAGCAAAATCTAACGTCTCA 60.348 38.462 0.00 0.00 0.00 3.27
6145 6413 5.591643 TGAAGCAAAATCTAACGTCTCAC 57.408 39.130 0.00 0.00 0.00 3.51
6146 6414 5.053811 TGAAGCAAAATCTAACGTCTCACA 58.946 37.500 0.00 0.00 0.00 3.58
6147 6415 5.525745 TGAAGCAAAATCTAACGTCTCACAA 59.474 36.000 0.00 0.00 0.00 3.33
6148 6416 6.204688 TGAAGCAAAATCTAACGTCTCACAAT 59.795 34.615 0.00 0.00 0.00 2.71
6149 6417 5.931532 AGCAAAATCTAACGTCTCACAATG 58.068 37.500 0.00 0.00 0.00 2.82
6150 6418 5.700832 AGCAAAATCTAACGTCTCACAATGA 59.299 36.000 0.00 0.00 0.00 2.57
6151 6419 5.790495 GCAAAATCTAACGTCTCACAATGAC 59.210 40.000 0.00 0.00 0.00 3.06
6152 6420 6.307155 CAAAATCTAACGTCTCACAATGACC 58.693 40.000 0.00 0.00 0.00 4.02
6153 6421 3.587797 TCTAACGTCTCACAATGACCC 57.412 47.619 0.00 0.00 0.00 4.46
6154 6422 2.894765 TCTAACGTCTCACAATGACCCA 59.105 45.455 0.00 0.00 0.00 4.51
6155 6423 2.631160 AACGTCTCACAATGACCCAA 57.369 45.000 0.00 0.00 0.00 4.12
6156 6424 1.878953 ACGTCTCACAATGACCCAAC 58.121 50.000 0.00 0.00 0.00 3.77
6157 6425 1.416401 ACGTCTCACAATGACCCAACT 59.584 47.619 0.00 0.00 0.00 3.16
6158 6426 1.800586 CGTCTCACAATGACCCAACTG 59.199 52.381 0.00 0.00 0.00 3.16
6159 6427 2.154462 GTCTCACAATGACCCAACTGG 58.846 52.381 0.00 0.00 41.37 4.00
6160 6428 2.054021 TCTCACAATGACCCAACTGGA 58.946 47.619 0.00 0.00 37.39 3.86
6161 6429 2.441375 TCTCACAATGACCCAACTGGAA 59.559 45.455 0.00 0.00 37.39 3.53
6162 6430 3.117701 TCTCACAATGACCCAACTGGAAA 60.118 43.478 0.00 0.00 37.39 3.13
6163 6431 3.636300 CTCACAATGACCCAACTGGAAAA 59.364 43.478 0.00 0.00 37.39 2.29
6164 6432 4.026744 TCACAATGACCCAACTGGAAAAA 58.973 39.130 0.00 0.00 37.39 1.94
6165 6433 4.119136 CACAATGACCCAACTGGAAAAAC 58.881 43.478 0.00 0.00 37.39 2.43
6166 6434 3.181480 ACAATGACCCAACTGGAAAAACG 60.181 43.478 0.00 0.00 37.39 3.60
6167 6435 2.421751 TGACCCAACTGGAAAAACGA 57.578 45.000 0.00 0.00 37.39 3.85
6168 6436 2.938838 TGACCCAACTGGAAAAACGAT 58.061 42.857 0.00 0.00 37.39 3.73
6169 6437 3.292460 TGACCCAACTGGAAAAACGATT 58.708 40.909 0.00 0.00 37.39 3.34
6170 6438 3.316868 TGACCCAACTGGAAAAACGATTC 59.683 43.478 0.00 0.00 37.39 2.52
6171 6439 2.292292 ACCCAACTGGAAAAACGATTCG 59.708 45.455 4.14 4.14 37.39 3.34
6172 6440 2.351350 CCCAACTGGAAAAACGATTCGG 60.351 50.000 11.29 0.00 37.39 4.30
6173 6441 2.550606 CCAACTGGAAAAACGATTCGGA 59.449 45.455 11.29 0.00 37.39 4.55
6174 6442 3.551551 CAACTGGAAAAACGATTCGGAC 58.448 45.455 11.29 0.00 0.00 4.79
6175 6443 3.121738 ACTGGAAAAACGATTCGGACT 57.878 42.857 11.29 0.00 0.00 3.85
6176 6444 3.473625 ACTGGAAAAACGATTCGGACTT 58.526 40.909 11.29 0.00 0.00 3.01
6177 6445 3.250040 ACTGGAAAAACGATTCGGACTTG 59.750 43.478 11.29 0.00 0.00 3.16
6178 6446 2.550606 TGGAAAAACGATTCGGACTTGG 59.449 45.455 11.29 0.00 0.00 3.61
6179 6447 2.581637 GAAAAACGATTCGGACTTGGC 58.418 47.619 11.29 0.00 0.00 4.52
6180 6448 1.892209 AAAACGATTCGGACTTGGCT 58.108 45.000 11.29 0.00 0.00 4.75
6181 6449 1.892209 AAACGATTCGGACTTGGCTT 58.108 45.000 11.29 0.00 0.00 4.35
6182 6450 1.892209 AACGATTCGGACTTGGCTTT 58.108 45.000 11.29 0.00 0.00 3.51
6183 6451 1.892209 ACGATTCGGACTTGGCTTTT 58.108 45.000 11.29 0.00 0.00 2.27
6184 6452 2.227194 ACGATTCGGACTTGGCTTTTT 58.773 42.857 11.29 0.00 0.00 1.94
6185 6453 2.225727 ACGATTCGGACTTGGCTTTTTC 59.774 45.455 11.29 0.00 0.00 2.29
6186 6454 2.225491 CGATTCGGACTTGGCTTTTTCA 59.775 45.455 0.00 0.00 0.00 2.69
6187 6455 3.667960 CGATTCGGACTTGGCTTTTTCAG 60.668 47.826 0.00 0.00 0.00 3.02
6188 6456 2.341846 TCGGACTTGGCTTTTTCAGT 57.658 45.000 0.00 0.00 0.00 3.41
6189 6457 2.218603 TCGGACTTGGCTTTTTCAGTC 58.781 47.619 0.00 0.00 0.00 3.51
6190 6458 1.946768 CGGACTTGGCTTTTTCAGTCA 59.053 47.619 0.00 0.00 34.27 3.41
6191 6459 2.554032 CGGACTTGGCTTTTTCAGTCAT 59.446 45.455 0.00 0.00 36.83 3.06
6192 6460 3.004734 CGGACTTGGCTTTTTCAGTCATT 59.995 43.478 0.00 0.00 36.83 2.57
6193 6461 4.550422 GGACTTGGCTTTTTCAGTCATTC 58.450 43.478 0.00 0.00 36.83 2.67
6194 6462 4.222114 GACTTGGCTTTTTCAGTCATTCG 58.778 43.478 0.00 0.00 36.83 3.34
6195 6463 3.882888 ACTTGGCTTTTTCAGTCATTCGA 59.117 39.130 0.00 0.00 36.83 3.71
6196 6464 3.896648 TGGCTTTTTCAGTCATTCGAC 57.103 42.857 0.00 0.00 42.95 4.20
6197 6465 3.210227 TGGCTTTTTCAGTCATTCGACA 58.790 40.909 0.00 0.00 45.23 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.586802 TCGACGCCATAGATCACTCG 59.413 55.000 0.00 0.00 0.00 4.18
2 3 1.068885 CCTCGACGCCATAGATCACTC 60.069 57.143 0.00 0.00 0.00 3.51
3 4 0.955178 CCTCGACGCCATAGATCACT 59.045 55.000 0.00 0.00 0.00 3.41
4 5 0.039074 CCCTCGACGCCATAGATCAC 60.039 60.000 0.00 0.00 0.00 3.06
6 7 1.080434 GCCCTCGACGCCATAGATC 60.080 63.158 0.00 0.00 0.00 2.75
7 8 2.574955 GGCCCTCGACGCCATAGAT 61.575 63.158 12.87 0.00 46.27 1.98
14 15 1.305930 AAAAAGATGGCCCTCGACGC 61.306 55.000 0.00 0.00 0.00 5.19
15 16 2.854522 AAAAAGATGGCCCTCGACG 58.145 52.632 0.00 0.00 0.00 5.12
30 31 1.203523 GGTCATGCCGGCATACAAAAA 59.796 47.619 39.94 18.65 34.91 1.94
31 32 0.814457 GGTCATGCCGGCATACAAAA 59.186 50.000 39.94 20.38 34.91 2.44
32 33 0.322906 TGGTCATGCCGGCATACAAA 60.323 50.000 39.94 23.38 41.21 2.83
33 34 1.029408 GTGGTCATGCCGGCATACAA 61.029 55.000 39.94 26.74 41.21 2.41
34 35 1.451207 GTGGTCATGCCGGCATACA 60.451 57.895 39.94 32.42 41.21 2.29
35 36 2.534019 CGTGGTCATGCCGGCATAC 61.534 63.158 39.94 32.19 41.21 2.39
36 37 2.203001 CGTGGTCATGCCGGCATA 60.203 61.111 39.94 23.34 41.21 3.14
40 41 4.838152 CTCCCGTGGTCATGCCGG 62.838 72.222 0.00 0.00 41.21 6.13
60 61 3.849953 GTTCGACCACGCCATCGC 61.850 66.667 0.00 0.00 38.24 4.58
61 62 2.126071 AGTTCGACCACGCCATCG 60.126 61.111 0.00 0.00 42.43 3.84
62 63 1.080093 TGAGTTCGACCACGCCATC 60.080 57.895 0.00 0.00 39.58 3.51
63 64 1.374252 GTGAGTTCGACCACGCCAT 60.374 57.895 0.00 0.00 39.58 4.40
64 65 2.028484 GTGAGTTCGACCACGCCA 59.972 61.111 0.00 0.00 39.58 5.69
92 93 1.206610 ACACATGCCAGCACACAAAAA 59.793 42.857 0.00 0.00 0.00 1.94
93 94 0.822811 ACACATGCCAGCACACAAAA 59.177 45.000 0.00 0.00 0.00 2.44
94 95 0.102663 CACACATGCCAGCACACAAA 59.897 50.000 0.00 0.00 0.00 2.83
95 96 1.734748 CACACATGCCAGCACACAA 59.265 52.632 0.00 0.00 0.00 3.33
96 97 2.847754 GCACACATGCCAGCACACA 61.848 57.895 0.00 0.00 46.97 3.72
97 98 2.049802 GCACACATGCCAGCACAC 60.050 61.111 0.00 0.00 46.97 3.82
126 127 4.600576 TTCACGCTGGCGCACTCA 62.601 61.111 10.83 0.00 44.19 3.41
127 128 4.077188 GTTCACGCTGGCGCACTC 62.077 66.667 10.83 0.00 44.19 3.51
128 129 4.609018 AGTTCACGCTGGCGCACT 62.609 61.111 10.83 11.29 44.19 4.40
129 130 4.374702 CAGTTCACGCTGGCGCAC 62.375 66.667 10.83 9.28 44.19 5.34
130 131 4.908687 ACAGTTCACGCTGGCGCA 62.909 61.111 10.83 0.00 44.19 6.09
131 132 4.374702 CACAGTTCACGCTGGCGC 62.375 66.667 15.04 0.00 44.19 6.53
132 133 3.716006 CCACAGTTCACGCTGGCG 61.716 66.667 13.56 13.56 46.03 5.69
133 134 0.673644 ATACCACAGTTCACGCTGGC 60.674 55.000 0.00 0.00 40.59 4.85
134 135 1.808411 AATACCACAGTTCACGCTGG 58.192 50.000 0.00 0.00 40.59 4.85
135 136 3.498397 AGAAAATACCACAGTTCACGCTG 59.502 43.478 0.00 0.00 41.92 5.18
136 137 3.498397 CAGAAAATACCACAGTTCACGCT 59.502 43.478 0.00 0.00 0.00 5.07
137 138 3.496884 TCAGAAAATACCACAGTTCACGC 59.503 43.478 0.00 0.00 0.00 5.34
138 139 5.666969 TTCAGAAAATACCACAGTTCACG 57.333 39.130 0.00 0.00 0.00 4.35
139 140 5.452777 GCTTCAGAAAATACCACAGTTCAC 58.547 41.667 0.00 0.00 0.00 3.18
140 141 4.518970 GGCTTCAGAAAATACCACAGTTCA 59.481 41.667 0.00 0.00 0.00 3.18
141 142 4.378459 CGGCTTCAGAAAATACCACAGTTC 60.378 45.833 0.00 0.00 0.00 3.01
142 143 3.502211 CGGCTTCAGAAAATACCACAGTT 59.498 43.478 0.00 0.00 0.00 3.16
143 144 3.074412 CGGCTTCAGAAAATACCACAGT 58.926 45.455 0.00 0.00 0.00 3.55
144 145 2.420022 CCGGCTTCAGAAAATACCACAG 59.580 50.000 0.00 0.00 0.00 3.66
145 146 2.224670 ACCGGCTTCAGAAAATACCACA 60.225 45.455 0.00 0.00 0.00 4.17
146 147 2.433436 ACCGGCTTCAGAAAATACCAC 58.567 47.619 0.00 0.00 0.00 4.16
147 148 2.871096 ACCGGCTTCAGAAAATACCA 57.129 45.000 0.00 0.00 0.00 3.25
148 149 4.638865 ACAATACCGGCTTCAGAAAATACC 59.361 41.667 0.00 0.00 0.00 2.73
149 150 5.813080 ACAATACCGGCTTCAGAAAATAC 57.187 39.130 0.00 0.00 0.00 1.89
150 151 6.017440 GCATACAATACCGGCTTCAGAAAATA 60.017 38.462 0.00 0.00 0.00 1.40
151 152 5.221048 GCATACAATACCGGCTTCAGAAAAT 60.221 40.000 0.00 0.00 0.00 1.82
152 153 4.095782 GCATACAATACCGGCTTCAGAAAA 59.904 41.667 0.00 0.00 0.00 2.29
153 154 3.625764 GCATACAATACCGGCTTCAGAAA 59.374 43.478 0.00 0.00 0.00 2.52
154 155 3.202906 GCATACAATACCGGCTTCAGAA 58.797 45.455 0.00 0.00 0.00 3.02
155 156 2.484770 GGCATACAATACCGGCTTCAGA 60.485 50.000 0.00 0.00 0.00 3.27
156 157 1.873591 GGCATACAATACCGGCTTCAG 59.126 52.381 0.00 0.00 0.00 3.02
157 158 1.808512 CGGCATACAATACCGGCTTCA 60.809 52.381 0.00 0.00 43.23 3.02
158 159 0.865769 CGGCATACAATACCGGCTTC 59.134 55.000 0.00 0.00 43.23 3.86
159 160 3.000815 CGGCATACAATACCGGCTT 57.999 52.632 0.00 0.00 43.23 4.35
160 161 4.771127 CGGCATACAATACCGGCT 57.229 55.556 0.00 0.00 43.23 5.52
163 164 2.950172 GCGCCGGCATACAATACCG 61.950 63.158 28.98 6.77 46.50 4.02
164 165 1.597027 AGCGCCGGCATACAATACC 60.597 57.895 28.98 2.17 43.41 2.73
165 166 1.569493 CAGCGCCGGCATACAATAC 59.431 57.895 28.98 4.42 43.41 1.89
166 167 1.596752 CCAGCGCCGGCATACAATA 60.597 57.895 28.98 0.00 43.41 1.90
167 168 2.901840 CCAGCGCCGGCATACAAT 60.902 61.111 28.98 1.24 43.41 2.71
184 185 3.896133 CTCATGCCGGCACCATGC 61.896 66.667 35.50 0.00 44.08 4.06
185 186 2.124612 TCTCATGCCGGCACCATG 60.125 61.111 35.50 26.75 41.03 3.66
186 187 2.124570 GTCTCATGCCGGCACCAT 60.125 61.111 35.50 14.65 0.00 3.55
187 188 2.970379 ATGTCTCATGCCGGCACCA 61.970 57.895 35.50 22.60 0.00 4.17
188 189 2.124570 ATGTCTCATGCCGGCACC 60.125 61.111 35.50 17.52 0.00 5.01
189 190 2.475466 CCATGTCTCATGCCGGCAC 61.475 63.158 35.50 19.90 0.00 5.01
190 191 2.124612 CCATGTCTCATGCCGGCA 60.125 61.111 34.80 34.80 0.00 5.69
191 192 3.589881 GCCATGTCTCATGCCGGC 61.590 66.667 22.73 22.73 0.00 6.13
192 193 2.903855 GGCCATGTCTCATGCCGG 60.904 66.667 0.00 0.00 33.59 6.13
194 195 3.589881 GCGGCCATGTCTCATGCC 61.590 66.667 2.24 8.14 40.54 4.40
195 196 2.515523 AGCGGCCATGTCTCATGC 60.516 61.111 2.24 0.00 0.00 4.06
196 197 2.184830 CCAGCGGCCATGTCTCATG 61.185 63.158 2.24 3.11 0.00 3.07
197 198 2.191375 CCAGCGGCCATGTCTCAT 59.809 61.111 2.24 0.00 0.00 2.90
198 199 4.783621 GCCAGCGGCCATGTCTCA 62.784 66.667 2.24 0.00 44.06 3.27
215 216 2.989055 AAGACCCGCGGCCGATAATG 62.989 60.000 33.48 14.19 36.29 1.90
216 217 2.319890 AAAGACCCGCGGCCGATAAT 62.320 55.000 33.48 11.29 36.29 1.28
217 218 2.524951 AAAAGACCCGCGGCCGATAA 62.525 55.000 33.48 0.00 36.29 1.75
218 219 2.524951 AAAAAGACCCGCGGCCGATA 62.525 55.000 33.48 0.00 36.29 2.92
219 220 3.912745 AAAAAGACCCGCGGCCGAT 62.913 57.895 33.48 10.85 36.29 4.18
220 221 4.629523 AAAAAGACCCGCGGCCGA 62.630 61.111 33.48 0.00 36.29 5.54
234 235 9.314321 TGTCCGCATTCAACTTTTAAATAAAAA 57.686 25.926 0.55 0.00 35.04 1.94
235 236 8.873215 TGTCCGCATTCAACTTTTAAATAAAA 57.127 26.923 0.00 0.00 34.35 1.52
236 237 8.920665 CATGTCCGCATTCAACTTTTAAATAAA 58.079 29.630 0.00 0.00 31.99 1.40
237 238 8.300286 TCATGTCCGCATTCAACTTTTAAATAA 58.700 29.630 0.00 0.00 31.99 1.40
238 239 7.821652 TCATGTCCGCATTCAACTTTTAAATA 58.178 30.769 0.00 0.00 31.99 1.40
239 240 6.686630 TCATGTCCGCATTCAACTTTTAAAT 58.313 32.000 0.00 0.00 31.99 1.40
240 241 6.078202 TCATGTCCGCATTCAACTTTTAAA 57.922 33.333 0.00 0.00 31.99 1.52
241 242 5.697473 TCATGTCCGCATTCAACTTTTAA 57.303 34.783 0.00 0.00 31.99 1.52
242 243 5.697473 TTCATGTCCGCATTCAACTTTTA 57.303 34.783 0.00 0.00 31.99 1.52
243 244 4.582701 TTCATGTCCGCATTCAACTTTT 57.417 36.364 0.00 0.00 31.99 2.27
244 245 4.582701 TTTCATGTCCGCATTCAACTTT 57.417 36.364 0.00 0.00 31.99 2.66
245 246 4.487948 CATTTCATGTCCGCATTCAACTT 58.512 39.130 0.00 0.00 31.99 2.66
246 247 3.119388 CCATTTCATGTCCGCATTCAACT 60.119 43.478 0.00 0.00 31.99 3.16
247 248 3.181397 CCATTTCATGTCCGCATTCAAC 58.819 45.455 0.00 0.00 31.99 3.18
248 249 2.166050 CCCATTTCATGTCCGCATTCAA 59.834 45.455 0.00 0.00 31.99 2.69
249 250 1.750206 CCCATTTCATGTCCGCATTCA 59.250 47.619 0.00 0.00 31.99 2.57
250 251 1.750778 ACCCATTTCATGTCCGCATTC 59.249 47.619 0.00 0.00 31.99 2.67
251 252 1.750778 GACCCATTTCATGTCCGCATT 59.249 47.619 0.00 0.00 31.99 3.56
252 253 1.392589 GACCCATTTCATGTCCGCAT 58.607 50.000 0.00 0.00 35.32 4.73
253 254 1.024046 CGACCCATTTCATGTCCGCA 61.024 55.000 0.00 0.00 0.00 5.69
254 255 1.714899 CCGACCCATTTCATGTCCGC 61.715 60.000 0.00 0.00 0.00 5.54
255 256 1.714899 GCCGACCCATTTCATGTCCG 61.715 60.000 0.00 0.00 0.00 4.79
256 257 1.714899 CGCCGACCCATTTCATGTCC 61.715 60.000 0.00 0.00 0.00 4.02
257 258 1.721487 CGCCGACCCATTTCATGTC 59.279 57.895 0.00 0.00 0.00 3.06
258 259 2.406616 GCGCCGACCCATTTCATGT 61.407 57.895 0.00 0.00 0.00 3.21
259 260 2.408835 GCGCCGACCCATTTCATG 59.591 61.111 0.00 0.00 0.00 3.07
260 261 3.202001 CGCGCCGACCCATTTCAT 61.202 61.111 0.00 0.00 0.00 2.57
261 262 4.690719 ACGCGCCGACCCATTTCA 62.691 61.111 5.73 0.00 0.00 2.69
262 263 3.428282 AACGCGCCGACCCATTTC 61.428 61.111 5.73 0.00 0.00 2.17
263 264 3.732892 CAACGCGCCGACCCATTT 61.733 61.111 5.73 0.00 0.00 2.32
282 283 3.313713 ATTTGGGTGGGCAATGCGC 62.314 57.895 15.68 15.68 41.94 6.09
283 284 1.448189 CATTTGGGTGGGCAATGCG 60.448 57.895 0.00 0.00 0.00 4.73
284 285 1.746239 GCATTTGGGTGGGCAATGC 60.746 57.895 0.00 0.00 44.36 3.56
285 286 0.036448 TTGCATTTGGGTGGGCAATG 59.964 50.000 0.00 0.00 40.94 2.82
286 287 0.769873 TTTGCATTTGGGTGGGCAAT 59.230 45.000 0.00 0.00 44.70 3.56
287 288 0.548031 TTTTGCATTTGGGTGGGCAA 59.452 45.000 0.00 0.00 43.79 4.52
288 289 0.179034 GTTTTGCATTTGGGTGGGCA 60.179 50.000 0.00 0.00 0.00 5.36
289 290 0.108396 AGTTTTGCATTTGGGTGGGC 59.892 50.000 0.00 0.00 0.00 5.36
290 291 1.542987 CCAGTTTTGCATTTGGGTGGG 60.543 52.381 0.00 0.00 0.00 4.61
291 292 1.542987 CCCAGTTTTGCATTTGGGTGG 60.543 52.381 14.10 5.57 44.27 4.61
292 293 1.881591 CCCAGTTTTGCATTTGGGTG 58.118 50.000 14.10 0.00 44.27 4.61
295 296 0.950071 CCGCCCAGTTTTGCATTTGG 60.950 55.000 0.00 0.00 0.00 3.28
296 297 0.033228 TCCGCCCAGTTTTGCATTTG 59.967 50.000 0.00 0.00 0.00 2.32
297 298 0.033366 GTCCGCCCAGTTTTGCATTT 59.967 50.000 0.00 0.00 0.00 2.32
298 299 1.665442 GTCCGCCCAGTTTTGCATT 59.335 52.632 0.00 0.00 0.00 3.56
299 300 2.625823 CGTCCGCCCAGTTTTGCAT 61.626 57.895 0.00 0.00 0.00 3.96
300 301 3.283684 CGTCCGCCCAGTTTTGCA 61.284 61.111 0.00 0.00 0.00 4.08
301 302 4.700365 GCGTCCGCCCAGTTTTGC 62.700 66.667 0.00 0.00 34.56 3.68
327 328 3.666253 GTCCGTTTGGGTTGGCCG 61.666 66.667 0.00 0.00 37.00 6.13
328 329 1.677637 TTTGTCCGTTTGGGTTGGCC 61.678 55.000 0.00 0.00 37.00 5.36
329 330 0.175989 TTTTGTCCGTTTGGGTTGGC 59.824 50.000 0.00 0.00 37.00 4.52
330 331 2.545731 CTTTTTGTCCGTTTGGGTTGG 58.454 47.619 0.00 0.00 37.00 3.77
331 332 1.930503 GCTTTTTGTCCGTTTGGGTTG 59.069 47.619 0.00 0.00 37.00 3.77
332 333 1.470112 CGCTTTTTGTCCGTTTGGGTT 60.470 47.619 0.00 0.00 37.00 4.11
333 334 0.101579 CGCTTTTTGTCCGTTTGGGT 59.898 50.000 0.00 0.00 37.00 4.51
334 335 0.596341 CCGCTTTTTGTCCGTTTGGG 60.596 55.000 0.00 0.00 35.24 4.12
335 336 0.382515 TCCGCTTTTTGTCCGTTTGG 59.617 50.000 0.00 0.00 0.00 3.28
336 337 1.202200 TGTCCGCTTTTTGTCCGTTTG 60.202 47.619 0.00 0.00 0.00 2.93
337 338 1.096416 TGTCCGCTTTTTGTCCGTTT 58.904 45.000 0.00 0.00 0.00 3.60
338 339 1.096416 TTGTCCGCTTTTTGTCCGTT 58.904 45.000 0.00 0.00 0.00 4.44
339 340 1.096416 TTTGTCCGCTTTTTGTCCGT 58.904 45.000 0.00 0.00 0.00 4.69
340 341 2.050691 CATTTGTCCGCTTTTTGTCCG 58.949 47.619 0.00 0.00 0.00 4.79
341 342 1.792367 GCATTTGTCCGCTTTTTGTCC 59.208 47.619 0.00 0.00 0.00 4.02
342 343 1.451651 CGCATTTGTCCGCTTTTTGTC 59.548 47.619 0.00 0.00 0.00 3.18
343 344 1.486439 CGCATTTGTCCGCTTTTTGT 58.514 45.000 0.00 0.00 0.00 2.83
344 345 0.161446 GCGCATTTGTCCGCTTTTTG 59.839 50.000 0.30 0.00 46.14 2.44
345 346 2.516486 GCGCATTTGTCCGCTTTTT 58.484 47.368 0.30 0.00 46.14 1.94
346 347 4.243383 GCGCATTTGTCCGCTTTT 57.757 50.000 0.30 0.00 46.14 2.27
350 351 4.811761 GACGGCGCATTTGTCCGC 62.812 66.667 10.83 0.00 46.49 5.54
352 353 4.160635 CCGACGGCGCATTTGTCC 62.161 66.667 4.27 0.00 35.83 4.02
353 354 2.452366 AAACCGACGGCGCATTTGTC 62.452 55.000 15.39 10.43 35.83 3.18
354 355 2.548295 AAACCGACGGCGCATTTGT 61.548 52.632 15.39 0.74 35.83 2.83
355 356 2.080062 CAAACCGACGGCGCATTTG 61.080 57.895 19.89 19.89 36.46 2.32
356 357 2.254051 CAAACCGACGGCGCATTT 59.746 55.556 15.39 4.98 35.83 2.32
357 358 3.732892 CCAAACCGACGGCGCATT 61.733 61.111 15.39 0.00 35.83 3.56
361 362 4.675029 AGACCCAAACCGACGGCG 62.675 66.667 15.39 1.94 37.24 6.46
362 363 2.281276 AAGACCCAAACCGACGGC 60.281 61.111 15.39 0.00 0.00 5.68
363 364 2.613506 GCAAGACCCAAACCGACGG 61.614 63.158 13.61 13.61 0.00 4.79
364 365 1.566018 GAGCAAGACCCAAACCGACG 61.566 60.000 0.00 0.00 0.00 5.12
365 366 0.250338 AGAGCAAGACCCAAACCGAC 60.250 55.000 0.00 0.00 0.00 4.79
366 367 0.472471 AAGAGCAAGACCCAAACCGA 59.528 50.000 0.00 0.00 0.00 4.69
367 368 2.076863 CTAAGAGCAAGACCCAAACCG 58.923 52.381 0.00 0.00 0.00 4.44
368 369 3.418684 TCTAAGAGCAAGACCCAAACC 57.581 47.619 0.00 0.00 0.00 3.27
369 370 3.502595 GGTTCTAAGAGCAAGACCCAAAC 59.497 47.826 0.00 0.00 0.00 2.93
370 371 3.394606 AGGTTCTAAGAGCAAGACCCAAA 59.605 43.478 0.00 0.00 28.29 3.28
371 372 2.979678 AGGTTCTAAGAGCAAGACCCAA 59.020 45.455 0.00 0.00 28.29 4.12
372 373 2.567615 GAGGTTCTAAGAGCAAGACCCA 59.432 50.000 0.00 0.00 28.29 4.51
373 374 2.417515 CGAGGTTCTAAGAGCAAGACCC 60.418 54.545 0.00 0.00 0.00 4.46
374 375 2.492484 TCGAGGTTCTAAGAGCAAGACC 59.508 50.000 0.00 0.00 0.00 3.85
375 376 3.851976 TCGAGGTTCTAAGAGCAAGAC 57.148 47.619 0.00 0.00 0.00 3.01
376 377 7.818997 TTATATCGAGGTTCTAAGAGCAAGA 57.181 36.000 0.00 0.00 0.00 3.02
377 378 9.482627 AATTTATATCGAGGTTCTAAGAGCAAG 57.517 33.333 0.00 0.00 0.00 4.01
378 379 9.832445 AAATTTATATCGAGGTTCTAAGAGCAA 57.168 29.630 0.00 0.00 0.00 3.91
379 380 9.832445 AAAATTTATATCGAGGTTCTAAGAGCA 57.168 29.630 0.00 0.00 0.00 4.26
411 412 7.980099 CCGGAAGTACTACAAAGTATCTCAAAT 59.020 37.037 0.00 0.00 40.30 2.32
420 421 6.410942 AGTTTACCGGAAGTACTACAAAGT 57.589 37.500 9.46 0.00 39.91 2.66
1179 1181 9.973661 TGAATTAGTAATTCTCATGAAGGGAAA 57.026 29.630 27.68 7.85 45.85 3.13
1180 1182 9.618890 CTGAATTAGTAATTCTCATGAAGGGAA 57.381 33.333 27.68 9.37 45.85 3.97
1182 1184 9.790344 ATCTGAATTAGTAATTCTCATGAAGGG 57.210 33.333 27.68 12.06 45.85 3.95
1186 1213 8.435187 AGCCATCTGAATTAGTAATTCTCATGA 58.565 33.333 27.98 22.18 45.85 3.07
1205 1232 1.413077 GCCGTAGTTTAGGAGCCATCT 59.587 52.381 0.00 0.00 0.00 2.90
1210 1237 2.608090 GTGAATGCCGTAGTTTAGGAGC 59.392 50.000 0.00 0.00 0.00 4.70
1249 1277 3.399770 TGCGACGCCGACGAAAAG 61.400 61.111 18.69 0.00 43.93 2.27
1344 1372 4.021925 GTTGACGAGCAGGGGCCT 62.022 66.667 0.84 0.00 42.56 5.19
1356 1384 2.095567 AGCGCATGTCAGAAATGTTGAC 60.096 45.455 11.47 0.00 44.03 3.18
1367 1395 0.318120 TGTTGAGAGAGCGCATGTCA 59.682 50.000 11.47 9.46 0.00 3.58
1400 1428 3.877559 CATGCCAATCTGGTAGTCTTCA 58.122 45.455 0.00 0.00 40.46 3.02
1512 1540 3.118038 AGTCCAGCAAAAACACCTACAGA 60.118 43.478 0.00 0.00 0.00 3.41
1728 1756 1.480312 CCCCCACCACAAAATGAGTCA 60.480 52.381 0.00 0.00 0.00 3.41
1815 1843 8.758633 AGTACACTACATGAAAGATGTTACAC 57.241 34.615 0.00 0.94 33.76 2.90
2021 2049 5.605534 CTCACTACAGGAATACCAGGAATG 58.394 45.833 0.00 0.00 38.94 2.67
2391 2431 8.722342 TTTTACAATCGCAAGTTCTTAATCAC 57.278 30.769 0.00 0.00 39.48 3.06
2723 2959 6.531948 ACAAAGAAGTCTTACGATGCATACTC 59.468 38.462 0.00 0.00 34.61 2.59
3071 3307 8.025243 TGTAGATTTCACTCAAACGTATTTCC 57.975 34.615 0.00 0.00 0.00 3.13
3083 3319 8.950210 TCTTCATTTTGGATGTAGATTTCACTC 58.050 33.333 0.00 0.00 0.00 3.51
3123 3359 7.474079 GCAGGATATAATTTCCACTCCTCTCTT 60.474 40.741 0.00 0.00 35.59 2.85
3268 3504 2.702478 CCTGCTCTCATGGAAGATGGTA 59.298 50.000 0.00 0.00 0.00 3.25
3282 3518 5.425539 ACCATGTAATACAGTAACCTGCTCT 59.574 40.000 0.00 0.00 42.81 4.09
3316 3552 4.330944 TTCGACTTTCACTGGTACATGT 57.669 40.909 2.69 2.69 38.20 3.21
3328 3564 6.976349 AGTACCAAAAATGGTTTTCGACTTTC 59.024 34.615 5.73 0.00 42.99 2.62
3354 3590 3.412386 ACAAGAATTTTGAGACGGAGGG 58.588 45.455 7.18 0.00 0.00 4.30
3355 3591 4.319177 AGACAAGAATTTTGAGACGGAGG 58.681 43.478 7.18 0.00 0.00 4.30
3356 3592 5.931441 AAGACAAGAATTTTGAGACGGAG 57.069 39.130 7.18 0.00 0.00 4.63
3357 3593 6.755206 TCTAAGACAAGAATTTTGAGACGGA 58.245 36.000 7.18 0.00 0.00 4.69
3358 3594 7.602517 ATCTAAGACAAGAATTTTGAGACGG 57.397 36.000 7.18 0.00 0.00 4.79
3359 3595 9.322776 CAAATCTAAGACAAGAATTTTGAGACG 57.677 33.333 7.18 0.00 31.51 4.18
3370 3606 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
3371 3607 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
3372 3608 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
3373 3609 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
3374 3610 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
3375 3611 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
3406 3642 9.261180 CGGATGTATCAAGTCACATTTTAGTAT 57.739 33.333 0.00 0.00 35.55 2.12
3407 3643 8.255206 ACGGATGTATCAAGTCACATTTTAGTA 58.745 33.333 0.00 0.00 35.55 1.82
3408 3644 7.103641 ACGGATGTATCAAGTCACATTTTAGT 58.896 34.615 0.00 0.00 35.55 2.24
3409 3645 7.539712 ACGGATGTATCAAGTCACATTTTAG 57.460 36.000 0.00 0.00 35.55 1.85
3410 3646 9.607988 AATACGGATGTATCAAGTCACATTTTA 57.392 29.630 0.00 0.00 40.42 1.52
3411 3647 8.506168 AATACGGATGTATCAAGTCACATTTT 57.494 30.769 0.00 0.00 40.42 1.82
3412 3648 8.506168 AAATACGGATGTATCAAGTCACATTT 57.494 30.769 0.00 0.00 40.42 2.32
3413 3649 9.261180 CTAAATACGGATGTATCAAGTCACATT 57.739 33.333 0.00 0.00 40.42 2.71
3414 3650 8.638873 TCTAAATACGGATGTATCAAGTCACAT 58.361 33.333 0.00 0.00 40.42 3.21
3415 3651 7.919091 GTCTAAATACGGATGTATCAAGTCACA 59.081 37.037 0.00 0.00 40.42 3.58
3416 3652 7.919091 TGTCTAAATACGGATGTATCAAGTCAC 59.081 37.037 0.00 0.00 40.42 3.67
3417 3653 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
3418 3654 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
3419 3655 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
3426 3662 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
3427 3663 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
3429 3665 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
3430 3666 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
3438 3674 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3439 3675 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3440 3676 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3441 3677 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3442 3678 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3443 3679 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3444 3680 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3445 3681 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3446 3682 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3447 3683 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3448 3684 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3449 3685 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3450 3686 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3451 3687 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3452 3688 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3453 3689 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3454 3690 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3455 3691 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3456 3692 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3457 3693 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3458 3694 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3459 3695 0.906282 GGTACTCCCTCCGTCCCAAA 60.906 60.000 0.00 0.00 0.00 3.28
3460 3696 1.305549 GGTACTCCCTCCGTCCCAA 60.306 63.158 0.00 0.00 0.00 4.12
3461 3697 1.882189 ATGGTACTCCCTCCGTCCCA 61.882 60.000 0.00 0.00 0.00 4.37
3462 3698 0.690077 AATGGTACTCCCTCCGTCCC 60.690 60.000 0.00 0.00 0.00 4.46
3463 3699 1.201424 AAATGGTACTCCCTCCGTCC 58.799 55.000 0.00 0.00 0.00 4.79
3464 3700 4.100498 TCAATAAATGGTACTCCCTCCGTC 59.900 45.833 0.00 0.00 0.00 4.79
3465 3701 4.035112 TCAATAAATGGTACTCCCTCCGT 58.965 43.478 0.00 0.00 0.00 4.69
3466 3702 4.682778 TCAATAAATGGTACTCCCTCCG 57.317 45.455 0.00 0.00 0.00 4.63
3467 3703 6.318900 CAGTTTCAATAAATGGTACTCCCTCC 59.681 42.308 0.00 0.00 0.00 4.30
3468 3704 6.318900 CCAGTTTCAATAAATGGTACTCCCTC 59.681 42.308 0.00 0.00 0.00 4.30
3469 3705 6.011981 TCCAGTTTCAATAAATGGTACTCCCT 60.012 38.462 4.21 0.00 31.04 4.20
3470 3706 6.184789 TCCAGTTTCAATAAATGGTACTCCC 58.815 40.000 4.21 0.00 31.04 4.30
3471 3707 7.339466 ACATCCAGTTTCAATAAATGGTACTCC 59.661 37.037 4.21 0.00 31.04 3.85
3472 3708 8.281212 ACATCCAGTTTCAATAAATGGTACTC 57.719 34.615 4.21 0.00 31.04 2.59
3473 3709 8.522830 CAACATCCAGTTTCAATAAATGGTACT 58.477 33.333 4.21 0.00 38.74 2.73
3474 3710 8.519526 TCAACATCCAGTTTCAATAAATGGTAC 58.480 33.333 4.21 0.00 38.74 3.34
3475 3711 8.642935 TCAACATCCAGTTTCAATAAATGGTA 57.357 30.769 4.21 0.00 38.74 3.25
3476 3712 7.451255 TCTCAACATCCAGTTTCAATAAATGGT 59.549 33.333 4.21 0.00 38.74 3.55
3477 3713 7.829725 TCTCAACATCCAGTTTCAATAAATGG 58.170 34.615 0.00 0.00 38.74 3.16
3485 3721 6.650807 GTGAACTATCTCAACATCCAGTTTCA 59.349 38.462 0.00 0.00 38.74 2.69
3578 3814 6.597280 AGAAGAGAACAACATATTTCCAGAGC 59.403 38.462 0.00 0.00 0.00 4.09
3579 3815 7.605691 ACAGAAGAGAACAACATATTTCCAGAG 59.394 37.037 0.00 0.00 0.00 3.35
4016 4252 1.888512 ACATGGATTTGGTGACAGCAC 59.111 47.619 6.88 0.00 44.54 4.40
4118 4354 5.009610 ACAACACAGACAAGTCACACTTTTT 59.990 36.000 2.72 0.00 36.03 1.94
4391 4639 5.964758 TCTGAATTGATTCAAAATTCGGGG 58.035 37.500 16.22 7.34 45.26 5.73
4575 4823 8.397575 TGTGTAAGCTCCTACTATCAAGATAG 57.602 38.462 14.02 14.02 44.79 2.08
4585 4833 6.354794 TGTATGTTTGTGTAAGCTCCTACT 57.645 37.500 0.00 0.00 0.00 2.57
4660 4915 4.035675 CCGAAAACAGATATCTTTCTGGGC 59.964 45.833 1.33 0.00 46.04 5.36
4742 4997 8.707796 TCTACCGAGGACTTCTAATATGATTT 57.292 34.615 0.00 0.00 0.00 2.17
4933 5188 3.189287 GCAACATGGGTAAGAACAGTGAG 59.811 47.826 0.00 0.00 0.00 3.51
5577 5841 5.535753 ACAATTTGCAAAGGCTCTTTACT 57.464 34.783 18.19 0.00 41.91 2.24
5790 6057 4.147321 AGAAGGCACACATCAAGAAATGT 58.853 39.130 0.00 0.00 40.49 2.71
5904 6171 8.795842 TTCCTCCGTAAAGAAATATAAAAGCA 57.204 30.769 0.00 0.00 0.00 3.91
5937 6204 8.677148 ACACCACCATCAATGATTATAACTAC 57.323 34.615 0.00 0.00 0.00 2.73
6058 6326 1.207791 ATGTCACCTGATCCCAGTCC 58.792 55.000 0.00 0.00 38.74 3.85
6059 6327 2.636830 CAATGTCACCTGATCCCAGTC 58.363 52.381 0.00 0.00 38.74 3.51
6060 6328 1.340405 GCAATGTCACCTGATCCCAGT 60.340 52.381 0.00 0.00 38.74 4.00
6061 6329 1.064906 AGCAATGTCACCTGATCCCAG 60.065 52.381 0.00 0.00 40.09 4.45
6062 6330 0.994247 AGCAATGTCACCTGATCCCA 59.006 50.000 0.00 0.00 0.00 4.37
6063 6331 2.019984 GAAGCAATGTCACCTGATCCC 58.980 52.381 0.00 0.00 0.00 3.85
6064 6332 2.421424 GTGAAGCAATGTCACCTGATCC 59.579 50.000 0.00 0.00 39.62 3.36
6065 6333 2.094894 CGTGAAGCAATGTCACCTGATC 59.905 50.000 0.00 0.00 42.00 2.92
6066 6334 2.079158 CGTGAAGCAATGTCACCTGAT 58.921 47.619 0.00 0.00 42.00 2.90
6067 6335 1.511850 CGTGAAGCAATGTCACCTGA 58.488 50.000 0.00 0.00 42.00 3.86
6080 6348 3.767230 CGGCGTGACTGCGTGAAG 61.767 66.667 0.00 0.00 35.06 3.02
6081 6349 2.680693 TTACGGCGTGACTGCGTGAA 62.681 55.000 24.86 1.84 35.06 3.18
6082 6350 3.196913 TTACGGCGTGACTGCGTGA 62.197 57.895 24.86 0.00 35.06 4.35
6083 6351 2.731721 TTACGGCGTGACTGCGTG 60.732 61.111 24.86 0.00 35.06 5.34
6084 6352 2.732094 GTTACGGCGTGACTGCGT 60.732 61.111 25.22 0.00 35.06 5.24
6085 6353 2.092291 ATGTTACGGCGTGACTGCG 61.092 57.895 30.52 0.00 35.06 5.18
6086 6354 1.419922 CATGTTACGGCGTGACTGC 59.580 57.895 30.52 9.89 0.00 4.40
6087 6355 1.419922 GCATGTTACGGCGTGACTG 59.580 57.895 30.52 25.22 0.00 3.51
6088 6356 3.870606 GCATGTTACGGCGTGACT 58.129 55.556 30.52 16.40 0.00 3.41
6096 6364 2.098298 GCACAGCCGCATGTTACG 59.902 61.111 0.00 0.00 0.00 3.18
6097 6365 3.262936 TGCACAGCCGCATGTTAC 58.737 55.556 0.00 0.00 36.86 2.50
6104 6372 1.097547 AATGGTAGATGCACAGCCGC 61.098 55.000 0.00 0.00 0.00 6.53
6105 6373 0.659427 CAATGGTAGATGCACAGCCG 59.341 55.000 0.00 0.00 0.00 5.52
6106 6374 2.042686 TCAATGGTAGATGCACAGCC 57.957 50.000 0.00 0.00 0.00 4.85
6107 6375 2.223433 GCTTCAATGGTAGATGCACAGC 60.223 50.000 0.00 0.00 36.50 4.40
6108 6376 3.011818 TGCTTCAATGGTAGATGCACAG 58.988 45.455 0.00 0.00 40.04 3.66
6109 6377 3.070476 TGCTTCAATGGTAGATGCACA 57.930 42.857 0.00 0.00 40.04 4.57
6110 6378 4.439305 TTTGCTTCAATGGTAGATGCAC 57.561 40.909 0.00 0.00 43.17 4.57
6111 6379 5.419788 AGATTTTGCTTCAATGGTAGATGCA 59.580 36.000 0.00 0.00 42.22 3.96
6112 6380 5.899299 AGATTTTGCTTCAATGGTAGATGC 58.101 37.500 0.00 0.00 36.88 3.91
6113 6381 7.641411 CGTTAGATTTTGCTTCAATGGTAGATG 59.359 37.037 0.00 0.00 0.00 2.90
6114 6382 7.336931 ACGTTAGATTTTGCTTCAATGGTAGAT 59.663 33.333 0.00 0.00 0.00 1.98
6115 6383 6.653320 ACGTTAGATTTTGCTTCAATGGTAGA 59.347 34.615 0.00 0.00 0.00 2.59
6116 6384 6.842163 ACGTTAGATTTTGCTTCAATGGTAG 58.158 36.000 0.00 0.00 0.00 3.18
6117 6385 6.653320 AGACGTTAGATTTTGCTTCAATGGTA 59.347 34.615 0.00 0.00 0.00 3.25
6118 6386 5.473504 AGACGTTAGATTTTGCTTCAATGGT 59.526 36.000 0.00 0.00 0.00 3.55
6119 6387 5.942872 AGACGTTAGATTTTGCTTCAATGG 58.057 37.500 0.00 0.00 0.00 3.16
6120 6388 6.521133 GTGAGACGTTAGATTTTGCTTCAATG 59.479 38.462 0.00 0.00 0.00 2.82
6121 6389 6.204688 TGTGAGACGTTAGATTTTGCTTCAAT 59.795 34.615 0.00 0.00 0.00 2.57
6122 6390 5.525745 TGTGAGACGTTAGATTTTGCTTCAA 59.474 36.000 0.00 0.00 0.00 2.69
6123 6391 5.053811 TGTGAGACGTTAGATTTTGCTTCA 58.946 37.500 0.00 0.00 0.00 3.02
6124 6392 5.591643 TGTGAGACGTTAGATTTTGCTTC 57.408 39.130 0.00 0.00 0.00 3.86
6125 6393 6.204688 TCATTGTGAGACGTTAGATTTTGCTT 59.795 34.615 0.00 0.00 0.00 3.91
6126 6394 5.700832 TCATTGTGAGACGTTAGATTTTGCT 59.299 36.000 0.00 0.00 0.00 3.91
6127 6395 5.790495 GTCATTGTGAGACGTTAGATTTTGC 59.210 40.000 0.00 0.00 0.00 3.68
6128 6396 6.307155 GGTCATTGTGAGACGTTAGATTTTG 58.693 40.000 0.00 0.00 36.87 2.44
6129 6397 5.411669 GGGTCATTGTGAGACGTTAGATTTT 59.588 40.000 0.00 0.00 36.87 1.82
6130 6398 4.935808 GGGTCATTGTGAGACGTTAGATTT 59.064 41.667 0.00 0.00 36.87 2.17
6131 6399 4.020573 TGGGTCATTGTGAGACGTTAGATT 60.021 41.667 0.00 0.00 36.87 2.40
6132 6400 3.513912 TGGGTCATTGTGAGACGTTAGAT 59.486 43.478 0.00 0.00 36.87 1.98
6133 6401 2.894765 TGGGTCATTGTGAGACGTTAGA 59.105 45.455 0.00 0.00 36.87 2.10
6134 6402 3.313012 TGGGTCATTGTGAGACGTTAG 57.687 47.619 0.00 0.00 36.87 2.34
6135 6403 3.070446 AGTTGGGTCATTGTGAGACGTTA 59.930 43.478 0.00 0.00 36.87 3.18
6136 6404 2.158813 AGTTGGGTCATTGTGAGACGTT 60.159 45.455 0.00 0.00 36.87 3.99
6137 6405 1.416401 AGTTGGGTCATTGTGAGACGT 59.584 47.619 0.00 0.00 36.87 4.34
6138 6406 1.800586 CAGTTGGGTCATTGTGAGACG 59.199 52.381 0.00 0.00 36.87 4.18
6139 6407 2.154462 CCAGTTGGGTCATTGTGAGAC 58.846 52.381 0.00 0.00 35.29 3.36
6140 6408 2.054021 TCCAGTTGGGTCATTGTGAGA 58.946 47.619 0.00 0.00 38.11 3.27
6141 6409 2.566833 TCCAGTTGGGTCATTGTGAG 57.433 50.000 0.00 0.00 38.11 3.51
6142 6410 3.304911 TTTCCAGTTGGGTCATTGTGA 57.695 42.857 0.00 0.00 38.11 3.58
6143 6411 4.119136 GTTTTTCCAGTTGGGTCATTGTG 58.881 43.478 0.00 0.00 38.11 3.33
6144 6412 3.181480 CGTTTTTCCAGTTGGGTCATTGT 60.181 43.478 0.00 0.00 38.11 2.71
6145 6413 3.067461 TCGTTTTTCCAGTTGGGTCATTG 59.933 43.478 0.00 0.00 38.11 2.82
6146 6414 3.292460 TCGTTTTTCCAGTTGGGTCATT 58.708 40.909 0.00 0.00 38.11 2.57
6147 6415 2.938838 TCGTTTTTCCAGTTGGGTCAT 58.061 42.857 0.00 0.00 38.11 3.06
6148 6416 2.421751 TCGTTTTTCCAGTTGGGTCA 57.578 45.000 0.00 0.00 38.11 4.02
6149 6417 3.608474 CGAATCGTTTTTCCAGTTGGGTC 60.608 47.826 0.00 0.00 38.11 4.46
6150 6418 2.292292 CGAATCGTTTTTCCAGTTGGGT 59.708 45.455 0.00 0.00 38.11 4.51
6151 6419 2.351350 CCGAATCGTTTTTCCAGTTGGG 60.351 50.000 0.82 0.00 35.41 4.12
6152 6420 2.550606 TCCGAATCGTTTTTCCAGTTGG 59.449 45.455 0.82 0.00 0.00 3.77
6153 6421 3.250040 AGTCCGAATCGTTTTTCCAGTTG 59.750 43.478 0.82 0.00 0.00 3.16
6154 6422 3.473625 AGTCCGAATCGTTTTTCCAGTT 58.526 40.909 0.82 0.00 0.00 3.16
6155 6423 3.121738 AGTCCGAATCGTTTTTCCAGT 57.878 42.857 0.82 0.00 0.00 4.00
6156 6424 3.364964 CCAAGTCCGAATCGTTTTTCCAG 60.365 47.826 0.82 0.00 0.00 3.86
6157 6425 2.550606 CCAAGTCCGAATCGTTTTTCCA 59.449 45.455 0.82 0.00 0.00 3.53
6158 6426 2.667448 GCCAAGTCCGAATCGTTTTTCC 60.667 50.000 0.82 0.00 0.00 3.13
6159 6427 2.225727 AGCCAAGTCCGAATCGTTTTTC 59.774 45.455 0.82 0.00 0.00 2.29
6160 6428 2.227194 AGCCAAGTCCGAATCGTTTTT 58.773 42.857 0.82 0.00 0.00 1.94
6161 6429 1.892209 AGCCAAGTCCGAATCGTTTT 58.108 45.000 0.82 0.00 0.00 2.43
6162 6430 1.892209 AAGCCAAGTCCGAATCGTTT 58.108 45.000 0.82 0.00 0.00 3.60
6163 6431 1.892209 AAAGCCAAGTCCGAATCGTT 58.108 45.000 0.82 0.00 0.00 3.85
6164 6432 1.892209 AAAAGCCAAGTCCGAATCGT 58.108 45.000 0.82 0.00 0.00 3.73
6165 6433 2.225491 TGAAAAAGCCAAGTCCGAATCG 59.775 45.455 0.00 0.00 0.00 3.34
6166 6434 3.253432 ACTGAAAAAGCCAAGTCCGAATC 59.747 43.478 0.00 0.00 0.00 2.52
6167 6435 3.222603 ACTGAAAAAGCCAAGTCCGAAT 58.777 40.909 0.00 0.00 0.00 3.34
6168 6436 2.616842 GACTGAAAAAGCCAAGTCCGAA 59.383 45.455 0.00 0.00 0.00 4.30
6169 6437 2.218603 GACTGAAAAAGCCAAGTCCGA 58.781 47.619 0.00 0.00 0.00 4.55
6170 6438 1.946768 TGACTGAAAAAGCCAAGTCCG 59.053 47.619 0.00 0.00 0.00 4.79
6171 6439 4.550422 GAATGACTGAAAAAGCCAAGTCC 58.450 43.478 0.00 0.00 0.00 3.85
6172 6440 4.024048 TCGAATGACTGAAAAAGCCAAGTC 60.024 41.667 0.00 0.00 0.00 3.01
6173 6441 3.882888 TCGAATGACTGAAAAAGCCAAGT 59.117 39.130 0.00 0.00 0.00 3.16
6174 6442 4.222114 GTCGAATGACTGAAAAAGCCAAG 58.778 43.478 0.00 0.00 42.08 3.61
6175 6443 3.629855 TGTCGAATGACTGAAAAAGCCAA 59.370 39.130 0.00 0.00 45.70 4.52
6176 6444 3.210227 TGTCGAATGACTGAAAAAGCCA 58.790 40.909 0.00 0.00 45.70 4.75
6177 6445 3.896648 TGTCGAATGACTGAAAAAGCC 57.103 42.857 0.00 0.00 45.70 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.