Multiple sequence alignment - TraesCS5D01G280700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G280700 chr5D 100.000 2934 0 0 1 2934 382004980 382002047 0.000000e+00 5419.0
1 TraesCS5D01G280700 chr5D 90.368 571 44 5 1 569 554404003 554403442 0.000000e+00 739.0
2 TraesCS5D01G280700 chr5A 85.634 891 82 21 645 1508 482485803 482484932 0.000000e+00 894.0
3 TraesCS5D01G280700 chr5A 89.265 680 53 4 1601 2276 482467280 482466617 0.000000e+00 833.0
4 TraesCS5D01G280700 chr5A 89.685 572 51 2 1 571 43243412 43242848 0.000000e+00 723.0
5 TraesCS5D01G280700 chr5A 88.359 524 42 8 1601 2119 482484868 482484359 1.930000e-171 612.0
6 TraesCS5D01G280700 chr5A 79.808 520 51 19 2229 2702 482466621 482466110 2.180000e-86 329.0
7 TraesCS5D01G280700 chr5A 87.755 147 15 3 1419 1564 482467433 482467289 5.030000e-38 169.0
8 TraesCS5D01G280700 chr5B 83.775 943 88 30 657 1565 458391927 458391016 0.000000e+00 833.0
9 TraesCS5D01G280700 chr5B 89.576 566 51 2 1 565 646646173 646646731 0.000000e+00 712.0
10 TraesCS5D01G280700 chr5B 87.614 549 45 8 1601 2148 458391008 458390482 1.490000e-172 616.0
11 TraesCS5D01G280700 chr2D 90.526 570 46 2 1 569 343679405 343678843 0.000000e+00 747.0
12 TraesCS5D01G280700 chr6D 90.636 566 45 2 1 565 77713154 77713712 0.000000e+00 745.0
13 TraesCS5D01G280700 chr7A 90.351 570 47 2 1 569 546253132 546253694 0.000000e+00 741.0
14 TraesCS5D01G280700 chr3A 90.426 564 46 2 1 563 740083218 740082662 0.000000e+00 736.0
15 TraesCS5D01G280700 chr6B 90.018 571 49 2 1 570 22807279 22806716 0.000000e+00 732.0
16 TraesCS5D01G280700 chr6B 87.931 58 4 3 2386 2442 708588388 708588333 6.790000e-07 65.8
17 TraesCS5D01G280700 chr4A 90.018 571 47 4 1 570 534183233 534182672 0.000000e+00 730.0
18 TraesCS5D01G280700 chr2B 81.013 79 12 3 2300 2377 499588081 499588005 3.160000e-05 60.2
19 TraesCS5D01G280700 chr2B 84.127 63 7 3 2386 2447 342244964 342244904 1.140000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G280700 chr5D 382002047 382004980 2933 True 5419.000000 5419 100.000000 1 2934 1 chr5D.!!$R1 2933
1 TraesCS5D01G280700 chr5D 554403442 554404003 561 True 739.000000 739 90.368000 1 569 1 chr5D.!!$R2 568
2 TraesCS5D01G280700 chr5A 482484359 482485803 1444 True 753.000000 894 86.996500 645 2119 2 chr5A.!!$R3 1474
3 TraesCS5D01G280700 chr5A 43242848 43243412 564 True 723.000000 723 89.685000 1 571 1 chr5A.!!$R1 570
4 TraesCS5D01G280700 chr5A 482466110 482467433 1323 True 443.666667 833 85.609333 1419 2702 3 chr5A.!!$R2 1283
5 TraesCS5D01G280700 chr5B 458390482 458391927 1445 True 724.500000 833 85.694500 657 2148 2 chr5B.!!$R1 1491
6 TraesCS5D01G280700 chr5B 646646173 646646731 558 False 712.000000 712 89.576000 1 565 1 chr5B.!!$F1 564
7 TraesCS5D01G280700 chr2D 343678843 343679405 562 True 747.000000 747 90.526000 1 569 1 chr2D.!!$R1 568
8 TraesCS5D01G280700 chr6D 77713154 77713712 558 False 745.000000 745 90.636000 1 565 1 chr6D.!!$F1 564
9 TraesCS5D01G280700 chr7A 546253132 546253694 562 False 741.000000 741 90.351000 1 569 1 chr7A.!!$F1 568
10 TraesCS5D01G280700 chr3A 740082662 740083218 556 True 736.000000 736 90.426000 1 563 1 chr3A.!!$R1 562
11 TraesCS5D01G280700 chr6B 22806716 22807279 563 True 732.000000 732 90.018000 1 570 1 chr6B.!!$R1 569
12 TraesCS5D01G280700 chr4A 534182672 534183233 561 True 730.000000 730 90.018000 1 570 1 chr4A.!!$R1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 594 0.041839 CATGCAGCGCTATCCGTTTC 60.042 55.0 10.99 0.0 39.71 2.78 F
619 621 0.106419 TTTGAGGGGGAAAACGCTGT 60.106 50.0 0.00 0.0 33.39 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1885 1949 0.169672 GCTGCTGCACCATGTAGTTG 59.830 55.0 11.11 0.0 39.41 3.16 R
2603 2761 0.035739 GGGGTGTTTCAGCGAAGGTA 59.964 55.0 0.00 0.0 35.08 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
194 195 2.924421 CAAGGATTTGAGAGGGGCTAC 58.076 52.381 0.00 0.00 36.36 3.58
272 274 1.040646 GAGTGAGTGGTGAGTGGTGA 58.959 55.000 0.00 0.00 0.00 4.02
276 278 0.601311 GAGTGGTGAGTGGTGAGTGC 60.601 60.000 0.00 0.00 0.00 4.40
277 279 1.050988 AGTGGTGAGTGGTGAGTGCT 61.051 55.000 0.00 0.00 0.00 4.40
278 280 0.882042 GTGGTGAGTGGTGAGTGCTG 60.882 60.000 0.00 0.00 0.00 4.41
279 281 1.302033 GGTGAGTGGTGAGTGCTGG 60.302 63.158 0.00 0.00 0.00 4.85
280 282 1.302033 GTGAGTGGTGAGTGCTGGG 60.302 63.158 0.00 0.00 0.00 4.45
281 283 1.766059 TGAGTGGTGAGTGCTGGGT 60.766 57.895 0.00 0.00 0.00 4.51
282 284 1.302033 GAGTGGTGAGTGCTGGGTG 60.302 63.158 0.00 0.00 0.00 4.61
287 289 0.890996 GGTGAGTGCTGGGTGAAAGG 60.891 60.000 0.00 0.00 0.00 3.11
356 358 2.575363 GTTTGAAGAAACGCTAGCTGC 58.425 47.619 13.93 0.00 32.49 5.25
367 369 2.434185 TAGCTGCCTCGGCGTTTG 60.434 61.111 6.85 0.00 45.51 2.93
369 371 4.389576 GCTGCCTCGGCGTTTGTG 62.390 66.667 6.85 0.00 45.51 3.33
396 398 1.785041 ATGTCAGCAAGCAACGCGTT 61.785 50.000 20.79 20.79 0.00 4.84
459 461 0.317020 GCGTTTCAGTGTTGGTCAGC 60.317 55.000 0.00 0.00 0.00 4.26
527 529 2.886862 TTCACGTCCGGTTCAGTTTA 57.113 45.000 0.00 0.00 0.00 2.01
529 531 1.408340 TCACGTCCGGTTCAGTTTACA 59.592 47.619 0.00 0.00 0.00 2.41
538 540 5.933463 TCCGGTTCAGTTTACAACGATAAAT 59.067 36.000 0.00 0.00 36.23 1.40
542 544 6.741358 GGTTCAGTTTACAACGATAAATGCTC 59.259 38.462 0.00 0.00 36.23 4.26
550 552 4.083324 ACAACGATAAATGCTCACAAGGTG 60.083 41.667 0.00 0.00 34.45 4.00
571 573 1.202879 AGAACAGTGATTTCGGCCCAA 60.203 47.619 0.00 0.00 0.00 4.12
572 574 1.818674 GAACAGTGATTTCGGCCCAAT 59.181 47.619 0.00 0.00 0.00 3.16
573 575 1.463674 ACAGTGATTTCGGCCCAATC 58.536 50.000 13.37 13.37 0.00 2.67
574 576 1.271871 ACAGTGATTTCGGCCCAATCA 60.272 47.619 17.46 17.46 38.14 2.57
575 577 2.026641 CAGTGATTTCGGCCCAATCAT 58.973 47.619 22.12 12.10 41.55 2.45
576 578 2.026641 AGTGATTTCGGCCCAATCATG 58.973 47.619 22.12 0.00 41.55 3.07
577 579 0.746063 TGATTTCGGCCCAATCATGC 59.254 50.000 17.46 0.00 36.03 4.06
578 580 0.746063 GATTTCGGCCCAATCATGCA 59.254 50.000 14.82 0.00 31.84 3.96
579 581 0.748450 ATTTCGGCCCAATCATGCAG 59.252 50.000 0.00 0.00 0.00 4.41
580 582 1.947597 TTTCGGCCCAATCATGCAGC 61.948 55.000 0.00 0.00 0.00 5.25
581 583 4.260355 CGGCCCAATCATGCAGCG 62.260 66.667 0.00 0.00 0.00 5.18
582 584 4.580551 GGCCCAATCATGCAGCGC 62.581 66.667 0.00 0.00 0.00 5.92
583 585 3.524606 GCCCAATCATGCAGCGCT 61.525 61.111 2.64 2.64 0.00 5.92
584 586 2.188829 GCCCAATCATGCAGCGCTA 61.189 57.895 10.99 0.00 0.00 4.26
585 587 1.521450 GCCCAATCATGCAGCGCTAT 61.521 55.000 10.99 0.00 0.00 2.97
586 588 0.520404 CCCAATCATGCAGCGCTATC 59.480 55.000 10.99 5.63 0.00 2.08
587 589 0.520404 CCAATCATGCAGCGCTATCC 59.480 55.000 10.99 1.66 0.00 2.59
588 590 0.165295 CAATCATGCAGCGCTATCCG 59.835 55.000 10.99 0.00 40.75 4.18
589 591 0.250038 AATCATGCAGCGCTATCCGT 60.250 50.000 10.99 0.00 39.71 4.69
590 592 0.250038 ATCATGCAGCGCTATCCGTT 60.250 50.000 10.99 0.00 39.71 4.44
591 593 0.461870 TCATGCAGCGCTATCCGTTT 60.462 50.000 10.99 0.00 39.71 3.60
592 594 0.041839 CATGCAGCGCTATCCGTTTC 60.042 55.000 10.99 0.00 39.71 2.78
593 595 0.179073 ATGCAGCGCTATCCGTTTCT 60.179 50.000 10.99 0.00 39.71 2.52
594 596 0.458260 TGCAGCGCTATCCGTTTCTA 59.542 50.000 10.99 0.00 39.71 2.10
595 597 1.068588 TGCAGCGCTATCCGTTTCTAT 59.931 47.619 10.99 0.00 39.71 1.98
596 598 1.721926 GCAGCGCTATCCGTTTCTATC 59.278 52.381 10.99 0.00 39.71 2.08
597 599 2.329379 CAGCGCTATCCGTTTCTATCC 58.671 52.381 10.99 0.00 39.71 2.59
598 600 2.029828 CAGCGCTATCCGTTTCTATCCT 60.030 50.000 10.99 0.00 39.71 3.24
599 601 2.628657 AGCGCTATCCGTTTCTATCCTT 59.371 45.455 8.99 0.00 39.71 3.36
600 602 3.069729 AGCGCTATCCGTTTCTATCCTTT 59.930 43.478 8.99 0.00 39.71 3.11
601 603 3.808174 GCGCTATCCGTTTCTATCCTTTT 59.192 43.478 0.00 0.00 39.71 2.27
602 604 4.272748 GCGCTATCCGTTTCTATCCTTTTT 59.727 41.667 0.00 0.00 39.71 1.94
603 605 5.738370 CGCTATCCGTTTCTATCCTTTTTG 58.262 41.667 0.00 0.00 0.00 2.44
604 606 5.522460 CGCTATCCGTTTCTATCCTTTTTGA 59.478 40.000 0.00 0.00 0.00 2.69
605 607 6.292381 CGCTATCCGTTTCTATCCTTTTTGAG 60.292 42.308 0.00 0.00 0.00 3.02
607 609 4.585879 TCCGTTTCTATCCTTTTTGAGGG 58.414 43.478 0.00 0.00 46.31 4.30
608 610 3.694566 CCGTTTCTATCCTTTTTGAGGGG 59.305 47.826 0.00 0.00 46.31 4.79
609 611 3.694566 CGTTTCTATCCTTTTTGAGGGGG 59.305 47.826 0.00 0.00 46.31 5.40
610 612 4.566907 CGTTTCTATCCTTTTTGAGGGGGA 60.567 45.833 0.00 0.00 46.31 4.81
611 613 5.330233 GTTTCTATCCTTTTTGAGGGGGAA 58.670 41.667 0.00 0.00 46.31 3.97
612 614 5.608798 TTCTATCCTTTTTGAGGGGGAAA 57.391 39.130 0.00 0.00 46.31 3.13
613 615 5.608798 TCTATCCTTTTTGAGGGGGAAAA 57.391 39.130 0.00 0.00 46.31 2.29
614 616 5.330233 TCTATCCTTTTTGAGGGGGAAAAC 58.670 41.667 0.00 0.00 46.31 2.43
615 617 2.312390 TCCTTTTTGAGGGGGAAAACG 58.688 47.619 0.00 0.00 46.31 3.60
616 618 1.270094 CCTTTTTGAGGGGGAAAACGC 60.270 52.381 0.00 0.00 42.26 4.84
617 619 1.686587 CTTTTTGAGGGGGAAAACGCT 59.313 47.619 0.00 0.00 36.23 5.07
618 620 1.036707 TTTTGAGGGGGAAAACGCTG 58.963 50.000 0.00 0.00 33.39 5.18
619 621 0.106419 TTTGAGGGGGAAAACGCTGT 60.106 50.000 0.00 0.00 33.39 4.40
620 622 0.536460 TTGAGGGGGAAAACGCTGTC 60.536 55.000 0.00 0.00 33.39 3.51
621 623 1.674651 GAGGGGGAAAACGCTGTCC 60.675 63.158 0.00 0.00 33.39 4.02
622 624 2.114411 GGGGGAAAACGCTGTCCA 59.886 61.111 0.00 0.00 35.44 4.02
623 625 1.971695 GGGGGAAAACGCTGTCCAG 60.972 63.158 0.00 0.00 35.44 3.86
624 626 1.228154 GGGGAAAACGCTGTCCAGT 60.228 57.895 0.00 0.00 35.44 4.00
625 627 0.822121 GGGGAAAACGCTGTCCAGTT 60.822 55.000 0.00 0.00 35.44 3.16
626 628 1.029681 GGGAAAACGCTGTCCAGTTT 58.970 50.000 0.00 0.00 41.72 2.66
627 629 1.269051 GGGAAAACGCTGTCCAGTTTG 60.269 52.381 0.00 0.00 40.07 2.93
628 630 1.269051 GGAAAACGCTGTCCAGTTTGG 60.269 52.381 0.00 0.00 40.07 3.28
629 631 0.744281 AAAACGCTGTCCAGTTTGGG 59.256 50.000 0.00 0.00 40.07 4.12
630 632 0.395173 AAACGCTGTCCAGTTTGGGT 60.395 50.000 0.00 0.00 38.90 4.51
631 633 1.101049 AACGCTGTCCAGTTTGGGTG 61.101 55.000 0.00 0.00 38.32 4.61
632 634 2.908073 CGCTGTCCAGTTTGGGTGC 61.908 63.158 0.00 0.00 38.32 5.01
633 635 1.529244 GCTGTCCAGTTTGGGTGCT 60.529 57.895 0.00 0.00 38.32 4.40
634 636 1.799258 GCTGTCCAGTTTGGGTGCTG 61.799 60.000 0.00 0.00 38.32 4.41
639 641 2.041153 CAGTTTGGGTGCTGGAACC 58.959 57.895 0.00 0.00 39.71 3.62
672 674 1.340248 TGGAGGAGTGACGAACAACTC 59.660 52.381 0.00 0.00 34.69 3.01
689 691 4.202461 ACAACTCCTTTCTGTAGCCATCAA 60.202 41.667 0.00 0.00 0.00 2.57
690 692 3.944087 ACTCCTTTCTGTAGCCATCAAC 58.056 45.455 0.00 0.00 0.00 3.18
711 713 2.737376 AACGAGCGCCCGAGAAAC 60.737 61.111 21.03 0.00 0.00 2.78
914 925 1.227147 CCACACGACAGACAACCGT 60.227 57.895 0.00 0.00 36.95 4.83
954 965 4.054671 GGATTGAGTGATTAGCTTCTCGG 58.945 47.826 0.00 0.00 0.00 4.63
961 972 4.579340 AGTGATTAGCTTCTCGGTTCGATA 59.421 41.667 0.00 0.00 34.61 2.92
962 973 4.912766 GTGATTAGCTTCTCGGTTCGATAG 59.087 45.833 0.00 0.00 34.61 2.08
1037 1048 2.982130 GGCGCTGAAGAGGAAGGA 59.018 61.111 7.64 0.00 0.00 3.36
1062 1079 1.683441 GGAGGTTTGGGTGGACGAT 59.317 57.895 0.00 0.00 0.00 3.73
1126 1143 4.509737 GCCGCCTGGTACGTCTCC 62.510 72.222 0.00 0.00 37.67 3.71
1127 1144 3.834799 CCGCCTGGTACGTCTCCC 61.835 72.222 0.00 0.00 0.00 4.30
1129 1146 2.363925 GCCTGGTACGTCTCCCCT 60.364 66.667 0.00 0.00 0.00 4.79
1131 1148 1.108132 GCCTGGTACGTCTCCCCTAG 61.108 65.000 0.00 0.00 0.00 3.02
1132 1149 1.108132 CCTGGTACGTCTCCCCTAGC 61.108 65.000 0.00 0.00 0.00 3.42
1136 1153 1.237533 GTACGTCTCCCCTAGCTAGC 58.762 60.000 15.74 6.62 0.00 3.42
1142 1159 3.296054 CCCCTAGCTAGCGACCCG 61.296 72.222 15.74 0.31 0.00 5.28
1143 1160 2.203308 CCCTAGCTAGCGACCCGA 60.203 66.667 15.74 0.00 0.00 5.14
1144 1161 2.553727 CCCTAGCTAGCGACCCGAC 61.554 68.421 15.74 0.00 0.00 4.79
1145 1162 2.553727 CCTAGCTAGCGACCCGACC 61.554 68.421 15.74 0.00 0.00 4.79
1168 1193 2.231540 CTCCCTCTCCCCGTTCTCCT 62.232 65.000 0.00 0.00 0.00 3.69
1178 1203 1.135344 CCCGTTCTCCTCTTCTCGAAC 60.135 57.143 0.00 0.00 34.07 3.95
1186 1220 4.082679 TCTCCTCTTCTCGAACTTGCTAAC 60.083 45.833 0.00 0.00 0.00 2.34
1187 1221 3.572682 TCCTCTTCTCGAACTTGCTAACA 59.427 43.478 0.00 0.00 0.00 2.41
1190 1224 2.080286 TCTCGAACTTGCTAACAGGC 57.920 50.000 0.00 0.00 0.00 4.85
1193 1227 0.949105 CGAACTTGCTAACAGGCGGT 60.949 55.000 0.00 0.00 34.52 5.68
1204 1238 4.954970 AGGCGGTGGTGCTTGTGG 62.955 66.667 0.00 0.00 34.52 4.17
1211 1245 0.751643 GTGGTGCTTGTGGTTGGTCT 60.752 55.000 0.00 0.00 0.00 3.85
1225 1259 2.280797 GTCTTGGGTGTGCGCAGA 60.281 61.111 12.22 6.80 38.79 4.26
1288 1322 4.056125 CGCAGACGCTCCCACAGA 62.056 66.667 0.00 0.00 35.30 3.41
1290 1324 2.126307 CAGACGCTCCCACAGACG 60.126 66.667 0.00 0.00 0.00 4.18
1291 1325 4.057428 AGACGCTCCCACAGACGC 62.057 66.667 0.00 0.00 0.00 5.19
1292 1326 4.357947 GACGCTCCCACAGACGCA 62.358 66.667 0.00 0.00 0.00 5.24
1530 1576 0.395173 GCGCTTTCCCCCATTTCCTA 60.395 55.000 0.00 0.00 0.00 2.94
1535 1581 3.309193 GCTTTCCCCCATTTCCTAGAGTT 60.309 47.826 0.00 0.00 0.00 3.01
1537 1583 5.574948 GCTTTCCCCCATTTCCTAGAGTTAA 60.575 44.000 0.00 0.00 0.00 2.01
1540 1586 3.435169 CCCCCATTTCCTAGAGTTAAGCC 60.435 52.174 0.00 0.00 0.00 4.35
1541 1587 3.467803 CCCATTTCCTAGAGTTAAGCCG 58.532 50.000 0.00 0.00 0.00 5.52
1549 1595 8.937634 TTTCCTAGAGTTAAGCCGTTAATTAG 57.062 34.615 0.00 0.00 30.76 1.73
1555 1601 6.373495 AGAGTTAAGCCGTTAATTAGTTTGGG 59.627 38.462 0.00 0.00 30.76 4.12
1577 1623 0.320374 TCATTCCGTTGGAGCTTCGT 59.680 50.000 0.00 0.00 31.21 3.85
1578 1624 0.721718 CATTCCGTTGGAGCTTCGTC 59.278 55.000 0.00 0.00 31.21 4.20
1594 1648 3.046968 TCGTCGGTTCAATTCCATTGA 57.953 42.857 0.00 0.00 46.77 2.57
1718 1782 1.962144 GGAACGGAGACCTCGAACA 59.038 57.895 0.00 0.00 0.00 3.18
1830 1894 2.997897 GGTCGAGCAGGACAGGGT 60.998 66.667 10.30 0.00 38.70 4.34
1843 1907 2.925170 AGGGTCGACCAGCAGCTT 60.925 61.111 34.40 8.87 43.89 3.74
1846 1910 2.035442 GGTCGACCAGCAGCTTTCC 61.035 63.158 29.75 0.00 35.64 3.13
1885 1949 3.175724 CAGCAGCAGCAGCACTAC 58.824 61.111 12.92 0.00 45.49 2.73
1886 1950 1.670083 CAGCAGCAGCAGCACTACA 60.670 57.895 12.92 0.00 45.49 2.74
2082 2151 1.194781 AGGAGATGGCCTGTTGACGT 61.195 55.000 3.32 0.00 36.76 4.34
2084 2153 0.037326 GAGATGGCCTGTTGACGTCA 60.037 55.000 15.76 15.76 0.00 4.35
2150 2219 3.695060 TCCGAACACTAGACAGGAGATTC 59.305 47.826 0.00 0.00 0.00 2.52
2152 2221 4.439426 CCGAACACTAGACAGGAGATTCTG 60.439 50.000 0.00 0.00 40.40 3.02
2159 2228 3.251484 AGACAGGAGATTCTGGTTTGGA 58.749 45.455 0.00 0.00 38.98 3.53
2172 2241 0.398318 GTTTGGACCAGAGCAGAGGT 59.602 55.000 0.00 0.00 41.83 3.85
2174 2243 0.764369 TTGGACCAGAGCAGAGGTGT 60.764 55.000 0.00 0.00 38.50 4.16
2175 2244 0.114364 TGGACCAGAGCAGAGGTGTA 59.886 55.000 0.00 0.00 38.50 2.90
2179 2248 3.292460 GACCAGAGCAGAGGTGTAGTAT 58.708 50.000 0.00 0.00 38.50 2.12
2193 2262 3.568853 GTGTAGTATGCTGTATCCCGAGT 59.431 47.826 0.00 0.00 0.00 4.18
2198 2267 0.616395 TGCTGTATCCCGAGTCCCAA 60.616 55.000 0.00 0.00 0.00 4.12
2214 2283 5.140454 AGTCCCAATGCTTACAAAAGAAGT 58.860 37.500 0.00 0.00 34.37 3.01
2215 2284 5.241728 AGTCCCAATGCTTACAAAAGAAGTC 59.758 40.000 0.00 0.00 34.37 3.01
2224 2293 3.388345 ACAAAAGAAGTCGAGTCCCTC 57.612 47.619 0.00 0.00 0.00 4.30
2262 2374 0.586319 TTTCCTTCAAAGTGCTCGCG 59.414 50.000 0.00 0.00 0.00 5.87
2284 2396 5.233988 CGATAGGGAAATTTCTAGCTCCAG 58.766 45.833 17.42 0.55 0.00 3.86
2301 2413 6.122964 AGCTCCAGTTTTGATAAGTATTCCC 58.877 40.000 0.00 0.00 0.00 3.97
2308 2420 8.669243 CAGTTTTGATAAGTATTCCCTCTGTTC 58.331 37.037 0.00 0.00 0.00 3.18
2321 2433 8.814448 ATTCCCTCTGTTCCTAAATATAAGGA 57.186 34.615 3.16 3.16 41.47 3.36
2365 2478 9.672673 ATGAACTACATACAGATTTATATGGGC 57.327 33.333 0.00 0.00 37.46 5.36
2384 2506 9.979897 ATATGGGCATATTTTAGAGATTTGCTA 57.020 29.630 0.00 0.00 33.67 3.49
2385 2507 7.510549 TGGGCATATTTTAGAGATTTGCTAC 57.489 36.000 0.00 0.00 33.67 3.58
2433 2555 7.982761 TTAAAAGGCTTATGTTTAGGAACGA 57.017 32.000 0.00 0.00 38.65 3.85
2435 2557 6.496338 AAAGGCTTATGTTTAGGAACGAAG 57.504 37.500 0.00 0.00 38.65 3.79
2445 2567 5.183904 TGTTTAGGAACGAAGGGAGTACTAC 59.816 44.000 0.00 0.00 38.65 2.73
2446 2568 3.446442 AGGAACGAAGGGAGTACTACA 57.554 47.619 7.57 0.00 0.00 2.74
2465 2587 7.549147 ACTACAGTACAGGAGTAAATTGGAA 57.451 36.000 0.38 0.00 30.67 3.53
2472 2594 9.143155 AGTACAGGAGTAAATTGGAAAATTTGT 57.857 29.630 6.67 0.00 34.51 2.83
2491 2624 4.568072 TGTGCCTTCCTCTTAATGCTTA 57.432 40.909 0.00 0.00 0.00 3.09
2505 2638 8.867112 TCTTAATGCTTATACAACGAGGTTAG 57.133 34.615 0.00 0.00 0.00 2.34
2524 2657 1.992557 AGGGCAACTCTAACCAATCCA 59.007 47.619 0.00 0.00 0.00 3.41
2527 2660 2.749621 GGCAACTCTAACCAATCCACTG 59.250 50.000 0.00 0.00 0.00 3.66
2530 2663 4.641396 CAACTCTAACCAATCCACTGTCA 58.359 43.478 0.00 0.00 0.00 3.58
2533 2666 4.780021 ACTCTAACCAATCCACTGTCAGAT 59.220 41.667 6.91 0.00 0.00 2.90
2534 2667 5.249393 ACTCTAACCAATCCACTGTCAGATT 59.751 40.000 6.91 0.00 32.95 2.40
2536 2669 3.795688 ACCAATCCACTGTCAGATTGT 57.204 42.857 20.34 11.24 45.13 2.71
2538 2671 4.836825 ACCAATCCACTGTCAGATTGTAG 58.163 43.478 20.34 12.90 45.13 2.74
2550 2702 5.911178 TGTCAGATTGTAGGGGAGGATAAAT 59.089 40.000 0.00 0.00 0.00 1.40
2554 2706 4.699925 TTGTAGGGGAGGATAAATTCGG 57.300 45.455 0.00 0.00 0.00 4.30
2562 2714 4.207955 GGAGGATAAATTCGGCTTTCCTT 58.792 43.478 0.00 0.00 0.00 3.36
2563 2715 4.036852 GGAGGATAAATTCGGCTTTCCTTG 59.963 45.833 0.00 0.00 0.00 3.61
2566 2718 4.142160 GGATAAATTCGGCTTTCCTTGCTT 60.142 41.667 0.00 0.00 0.00 3.91
2571 2723 0.872388 CGGCTTTCCTTGCTTACGTT 59.128 50.000 0.00 0.00 0.00 3.99
2579 2731 4.445452 TCCTTGCTTACGTTGTACCTAG 57.555 45.455 0.00 0.00 0.00 3.02
2585 2737 3.625938 CTTACGTTGTACCTAGCCGATC 58.374 50.000 0.00 0.00 0.00 3.69
2587 2739 1.030457 CGTTGTACCTAGCCGATCCT 58.970 55.000 0.00 0.00 0.00 3.24
2588 2740 1.001597 CGTTGTACCTAGCCGATCCTC 60.002 57.143 0.00 0.00 0.00 3.71
2589 2741 2.308690 GTTGTACCTAGCCGATCCTCT 58.691 52.381 0.00 0.00 0.00 3.69
2590 2742 3.484407 GTTGTACCTAGCCGATCCTCTA 58.516 50.000 0.00 0.00 0.00 2.43
2592 2744 4.174704 TGTACCTAGCCGATCCTCTAAA 57.825 45.455 0.00 0.00 0.00 1.85
2593 2745 3.887716 TGTACCTAGCCGATCCTCTAAAC 59.112 47.826 0.00 0.00 0.00 2.01
2594 2746 2.317973 ACCTAGCCGATCCTCTAAACC 58.682 52.381 0.00 0.00 0.00 3.27
2596 2748 1.269998 CTAGCCGATCCTCTAAACCGG 59.730 57.143 0.00 0.00 42.74 5.28
2597 2749 0.396695 AGCCGATCCTCTAAACCGGA 60.397 55.000 9.46 0.00 42.49 5.14
2598 2750 0.680061 GCCGATCCTCTAAACCGGAT 59.320 55.000 9.46 0.00 42.49 4.18
2603 2761 4.463186 CCGATCCTCTAAACCGGATAATCT 59.537 45.833 9.46 0.00 42.49 2.40
2610 2768 6.323203 TCTAAACCGGATAATCTACCTTCG 57.677 41.667 9.46 0.00 0.00 3.79
2612 2770 2.595238 ACCGGATAATCTACCTTCGCT 58.405 47.619 9.46 0.00 0.00 4.93
2618 2776 5.357257 GGATAATCTACCTTCGCTGAAACA 58.643 41.667 0.00 0.00 0.00 2.83
2629 2787 1.177401 GCTGAAACACCCCTCCAATC 58.823 55.000 0.00 0.00 0.00 2.67
2638 2796 3.660669 ACACCCCTCCAATCTTCCTAAAA 59.339 43.478 0.00 0.00 0.00 1.52
2644 2802 5.830457 CCCTCCAATCTTCCTAAAAATCCTC 59.170 44.000 0.00 0.00 0.00 3.71
2646 2804 6.319911 CCTCCAATCTTCCTAAAAATCCTCAC 59.680 42.308 0.00 0.00 0.00 3.51
2647 2805 7.032598 TCCAATCTTCCTAAAAATCCTCACT 57.967 36.000 0.00 0.00 0.00 3.41
2648 2806 6.886459 TCCAATCTTCCTAAAAATCCTCACTG 59.114 38.462 0.00 0.00 0.00 3.66
2679 2837 2.683572 GGAAAATGCCCCGCCCTT 60.684 61.111 0.00 0.00 0.00 3.95
2680 2838 2.578664 GAAAATGCCCCGCCCTTG 59.421 61.111 0.00 0.00 0.00 3.61
2681 2839 3.664025 GAAAATGCCCCGCCCTTGC 62.664 63.158 0.00 0.00 0.00 4.01
2704 2862 4.540153 CGGCTTCATTCCCGTCAT 57.460 55.556 0.00 0.00 39.67 3.06
2705 2863 2.016961 CGGCTTCATTCCCGTCATG 58.983 57.895 0.00 0.00 39.67 3.07
2706 2864 0.744414 CGGCTTCATTCCCGTCATGT 60.744 55.000 0.00 0.00 39.67 3.21
2707 2865 1.017387 GGCTTCATTCCCGTCATGTC 58.983 55.000 0.00 0.00 0.00 3.06
2708 2866 1.017387 GCTTCATTCCCGTCATGTCC 58.983 55.000 0.00 0.00 0.00 4.02
2709 2867 1.668419 CTTCATTCCCGTCATGTCCC 58.332 55.000 0.00 0.00 0.00 4.46
2710 2868 0.107897 TTCATTCCCGTCATGTCCCG 60.108 55.000 0.00 0.00 0.00 5.14
2711 2869 2.180204 CATTCCCGTCATGTCCCGC 61.180 63.158 0.00 0.00 0.00 6.13
2712 2870 3.400599 ATTCCCGTCATGTCCCGCC 62.401 63.158 0.00 0.00 0.00 6.13
2726 2884 4.923710 CGCCGCCGACATCGATGA 62.924 66.667 31.33 0.00 43.02 2.92
2727 2885 3.330853 GCCGCCGACATCGATGAC 61.331 66.667 31.33 23.56 43.02 3.06
2728 2886 2.413351 CCGCCGACATCGATGACT 59.587 61.111 31.33 10.53 43.02 3.41
2729 2887 1.946156 CCGCCGACATCGATGACTG 60.946 63.158 31.33 21.47 43.02 3.51
2730 2888 1.946156 CGCCGACATCGATGACTGG 60.946 63.158 31.33 26.31 43.02 4.00
2731 2889 2.240500 GCCGACATCGATGACTGGC 61.241 63.158 29.99 29.99 43.02 4.85
2732 2890 1.592669 CCGACATCGATGACTGGCC 60.593 63.158 31.33 11.35 43.02 5.36
2733 2891 1.592669 CGACATCGATGACTGGCCC 60.593 63.158 31.33 9.80 43.02 5.80
2734 2892 1.826024 GACATCGATGACTGGCCCT 59.174 57.895 31.33 6.50 0.00 5.19
2735 2893 1.040646 GACATCGATGACTGGCCCTA 58.959 55.000 31.33 0.00 0.00 3.53
2736 2894 0.753262 ACATCGATGACTGGCCCTAC 59.247 55.000 31.33 0.00 0.00 3.18
2737 2895 0.034059 CATCGATGACTGGCCCTACC 59.966 60.000 21.02 0.00 39.84 3.18
2738 2896 0.105453 ATCGATGACTGGCCCTACCT 60.105 55.000 0.00 0.00 40.22 3.08
2739 2897 0.325296 TCGATGACTGGCCCTACCTT 60.325 55.000 0.00 0.00 40.22 3.50
2740 2898 0.105039 CGATGACTGGCCCTACCTTC 59.895 60.000 0.00 0.00 40.22 3.46
2741 2899 0.105039 GATGACTGGCCCTACCTTCG 59.895 60.000 0.00 0.00 40.22 3.79
2742 2900 1.338136 ATGACTGGCCCTACCTTCGG 61.338 60.000 0.00 0.00 40.22 4.30
2743 2901 1.684734 GACTGGCCCTACCTTCGGA 60.685 63.158 0.00 0.00 40.22 4.55
2744 2902 1.677637 GACTGGCCCTACCTTCGGAG 61.678 65.000 0.00 0.00 40.22 4.63
2745 2903 1.686110 CTGGCCCTACCTTCGGAGT 60.686 63.158 0.00 0.00 40.22 3.85
2746 2904 1.961180 CTGGCCCTACCTTCGGAGTG 61.961 65.000 0.00 0.00 40.22 3.51
2747 2905 2.732619 GGCCCTACCTTCGGAGTGG 61.733 68.421 0.00 0.00 34.51 4.00
2748 2906 1.684734 GCCCTACCTTCGGAGTGGA 60.685 63.158 6.20 0.00 0.00 4.02
2749 2907 1.957765 GCCCTACCTTCGGAGTGGAC 61.958 65.000 6.20 0.00 0.00 4.02
2750 2908 0.613853 CCCTACCTTCGGAGTGGACA 60.614 60.000 6.20 0.00 0.00 4.02
2751 2909 1.263356 CCTACCTTCGGAGTGGACAA 58.737 55.000 6.20 0.00 0.00 3.18
2752 2910 1.067071 CCTACCTTCGGAGTGGACAAC 60.067 57.143 6.20 0.00 0.00 3.32
2753 2911 0.971386 TACCTTCGGAGTGGACAACC 59.029 55.000 6.20 0.00 0.00 3.77
2754 2912 1.003718 CCTTCGGAGTGGACAACCC 60.004 63.158 0.00 0.00 34.81 4.11
2755 2913 1.374252 CTTCGGAGTGGACAACCCG 60.374 63.158 4.08 4.08 41.38 5.28
2756 2914 2.781595 CTTCGGAGTGGACAACCCGG 62.782 65.000 9.25 0.00 40.78 5.73
2757 2915 3.307906 CGGAGTGGACAACCCGGA 61.308 66.667 0.73 0.00 38.33 5.14
2758 2916 2.346365 GGAGTGGACAACCCGGAC 59.654 66.667 0.73 0.00 37.93 4.79
2759 2917 2.346365 GAGTGGACAACCCGGACC 59.654 66.667 0.73 0.00 37.93 4.46
2760 2918 3.246880 AGTGGACAACCCGGACCC 61.247 66.667 0.73 0.00 37.93 4.46
2761 2919 3.246880 GTGGACAACCCGGACCCT 61.247 66.667 0.73 0.00 37.93 4.34
2762 2920 2.448931 TGGACAACCCGGACCCTT 60.449 61.111 0.73 0.00 37.93 3.95
2763 2921 2.350134 GGACAACCCGGACCCTTC 59.650 66.667 0.73 0.00 0.00 3.46
2764 2922 2.350134 GACAACCCGGACCCTTCC 59.650 66.667 0.73 0.00 38.77 3.46
2772 2930 3.714001 GGACCCTTCCGTCACCCC 61.714 72.222 0.00 0.00 34.24 4.95
2773 2931 2.926242 GACCCTTCCGTCACCCCA 60.926 66.667 0.00 0.00 32.74 4.96
2774 2932 3.246880 ACCCTTCCGTCACCCCAC 61.247 66.667 0.00 0.00 0.00 4.61
2775 2933 3.246112 CCCTTCCGTCACCCCACA 61.246 66.667 0.00 0.00 0.00 4.17
2776 2934 2.347490 CCTTCCGTCACCCCACAG 59.653 66.667 0.00 0.00 0.00 3.66
2777 2935 2.347490 CTTCCGTCACCCCACAGG 59.653 66.667 0.00 0.00 43.78 4.00
2778 2936 3.901797 CTTCCGTCACCCCACAGGC 62.902 68.421 0.00 0.00 40.58 4.85
2807 2965 3.573558 GCTCGTCGCCATTGGAAA 58.426 55.556 6.95 0.00 0.00 3.13
2808 2966 1.134694 GCTCGTCGCCATTGGAAAC 59.865 57.895 6.95 2.33 0.00 2.78
2809 2967 1.794222 CTCGTCGCCATTGGAAACC 59.206 57.895 6.95 0.00 0.00 3.27
2810 2968 0.953471 CTCGTCGCCATTGGAAACCA 60.953 55.000 6.95 0.00 0.00 3.67
2811 2969 1.209127 CGTCGCCATTGGAAACCAC 59.791 57.895 6.95 0.00 30.78 4.16
2812 2970 1.584495 GTCGCCATTGGAAACCACC 59.416 57.895 6.95 0.00 30.78 4.61
2813 2971 1.969064 TCGCCATTGGAAACCACCG 60.969 57.895 6.95 0.00 30.78 4.94
2814 2972 2.261361 GCCATTGGAAACCACCGC 59.739 61.111 6.95 0.00 30.78 5.68
2815 2973 2.969827 CCATTGGAAACCACCGCC 59.030 61.111 0.00 0.00 30.78 6.13
2816 2974 1.606313 CCATTGGAAACCACCGCCT 60.606 57.895 0.00 0.00 30.78 5.52
2817 2975 1.595093 CCATTGGAAACCACCGCCTC 61.595 60.000 0.00 0.00 30.78 4.70
2818 2976 1.304134 ATTGGAAACCACCGCCTCC 60.304 57.895 0.00 0.00 30.78 4.30
2819 2977 3.835790 TTGGAAACCACCGCCTCCG 62.836 63.158 0.00 0.00 30.78 4.63
2832 2990 4.069232 CTCCGCCTGCACCGAAGA 62.069 66.667 3.74 0.00 0.00 2.87
2833 2991 3.589654 CTCCGCCTGCACCGAAGAA 62.590 63.158 3.74 0.00 0.00 2.52
2834 2992 2.668212 CCGCCTGCACCGAAGAAA 60.668 61.111 3.74 0.00 0.00 2.52
2835 2993 2.258013 CCGCCTGCACCGAAGAAAA 61.258 57.895 3.74 0.00 0.00 2.29
2836 2994 1.207593 CGCCTGCACCGAAGAAAAG 59.792 57.895 0.00 0.00 0.00 2.27
2837 2995 1.507141 CGCCTGCACCGAAGAAAAGT 61.507 55.000 0.00 0.00 0.00 2.66
2838 2996 0.668535 GCCTGCACCGAAGAAAAGTT 59.331 50.000 0.00 0.00 0.00 2.66
2839 2997 1.067060 GCCTGCACCGAAGAAAAGTTT 59.933 47.619 0.00 0.00 0.00 2.66
2840 2998 2.292292 GCCTGCACCGAAGAAAAGTTTA 59.708 45.455 0.00 0.00 0.00 2.01
2841 2999 3.609409 GCCTGCACCGAAGAAAAGTTTAG 60.609 47.826 0.00 0.00 0.00 1.85
2842 3000 3.058224 CCTGCACCGAAGAAAAGTTTAGG 60.058 47.826 0.00 0.00 0.00 2.69
2843 3001 2.882137 TGCACCGAAGAAAAGTTTAGGG 59.118 45.455 0.00 0.00 0.00 3.53
2844 3002 3.143728 GCACCGAAGAAAAGTTTAGGGA 58.856 45.455 0.00 0.00 0.00 4.20
2845 3003 3.756963 GCACCGAAGAAAAGTTTAGGGAT 59.243 43.478 0.00 0.00 0.00 3.85
2846 3004 4.379499 GCACCGAAGAAAAGTTTAGGGATG 60.379 45.833 0.00 0.00 0.00 3.51
2847 3005 5.001232 CACCGAAGAAAAGTTTAGGGATGA 58.999 41.667 0.00 0.00 0.00 2.92
2848 3006 5.472137 CACCGAAGAAAAGTTTAGGGATGAA 59.528 40.000 0.00 0.00 0.00 2.57
2849 3007 6.016610 CACCGAAGAAAAGTTTAGGGATGAAA 60.017 38.462 0.00 0.00 0.00 2.69
2850 3008 6.548251 ACCGAAGAAAAGTTTAGGGATGAAAA 59.452 34.615 0.00 0.00 0.00 2.29
2851 3009 7.068962 ACCGAAGAAAAGTTTAGGGATGAAAAA 59.931 33.333 0.00 0.00 0.00 1.94
2852 3010 7.595130 CCGAAGAAAAGTTTAGGGATGAAAAAG 59.405 37.037 0.00 0.00 0.00 2.27
2853 3011 7.595130 CGAAGAAAAGTTTAGGGATGAAAAAGG 59.405 37.037 0.00 0.00 0.00 3.11
2854 3012 7.914427 AGAAAAGTTTAGGGATGAAAAAGGT 57.086 32.000 0.00 0.00 0.00 3.50
2855 3013 7.952671 AGAAAAGTTTAGGGATGAAAAAGGTC 58.047 34.615 0.00 0.00 0.00 3.85
2856 3014 6.665992 AAAGTTTAGGGATGAAAAAGGTCC 57.334 37.500 0.00 0.00 0.00 4.46
2857 3015 5.333566 AGTTTAGGGATGAAAAAGGTCCA 57.666 39.130 0.00 0.00 0.00 4.02
2858 3016 5.903923 AGTTTAGGGATGAAAAAGGTCCAT 58.096 37.500 0.00 0.00 0.00 3.41
2859 3017 5.952347 AGTTTAGGGATGAAAAAGGTCCATC 59.048 40.000 0.00 0.00 36.78 3.51
2860 3018 3.004752 AGGGATGAAAAAGGTCCATCG 57.995 47.619 0.00 0.00 37.99 3.84
2861 3019 2.024414 GGGATGAAAAAGGTCCATCGG 58.976 52.381 0.00 0.00 37.99 4.18
2862 3020 2.024414 GGATGAAAAAGGTCCATCGGG 58.976 52.381 0.00 0.00 37.99 5.14
2863 3021 2.620627 GGATGAAAAAGGTCCATCGGGT 60.621 50.000 0.00 0.00 37.99 5.28
2864 3022 2.668144 TGAAAAAGGTCCATCGGGTT 57.332 45.000 0.00 0.00 34.93 4.11
2865 3023 2.510613 TGAAAAAGGTCCATCGGGTTC 58.489 47.619 0.00 0.00 34.93 3.62
2866 3024 2.158593 TGAAAAAGGTCCATCGGGTTCA 60.159 45.455 0.00 0.00 34.93 3.18
2867 3025 2.668144 AAAAGGTCCATCGGGTTCAA 57.332 45.000 0.00 0.00 34.93 2.69
2868 3026 2.200373 AAAGGTCCATCGGGTTCAAG 57.800 50.000 0.00 0.00 34.93 3.02
2869 3027 0.322546 AAGGTCCATCGGGTTCAAGC 60.323 55.000 0.00 0.00 34.93 4.01
2870 3028 1.201429 AGGTCCATCGGGTTCAAGCT 61.201 55.000 0.00 0.00 34.93 3.74
2871 3029 0.744771 GGTCCATCGGGTTCAAGCTC 60.745 60.000 0.00 0.00 34.93 4.09
2872 3030 0.744771 GTCCATCGGGTTCAAGCTCC 60.745 60.000 0.00 0.00 34.93 4.70
2873 3031 1.198094 TCCATCGGGTTCAAGCTCCA 61.198 55.000 0.00 0.00 34.93 3.86
2874 3032 0.745845 CCATCGGGTTCAAGCTCCAG 60.746 60.000 0.00 0.00 0.00 3.86
2875 3033 1.078143 ATCGGGTTCAAGCTCCAGC 60.078 57.895 0.00 0.00 42.49 4.85
2885 3043 3.805267 GCTCCAGCTCGAACCATG 58.195 61.111 0.00 0.00 38.21 3.66
2886 3044 1.817099 GCTCCAGCTCGAACCATGG 60.817 63.158 11.19 11.19 38.21 3.66
2887 3045 1.817099 CTCCAGCTCGAACCATGGC 60.817 63.158 13.04 0.00 32.63 4.40
2888 3046 2.046023 CCAGCTCGAACCATGGCA 60.046 61.111 13.04 0.00 0.00 4.92
2889 3047 1.675310 CCAGCTCGAACCATGGCAA 60.675 57.895 13.04 0.00 0.00 4.52
2890 3048 1.033746 CCAGCTCGAACCATGGCAAT 61.034 55.000 13.04 0.00 0.00 3.56
2891 3049 0.099968 CAGCTCGAACCATGGCAATG 59.900 55.000 13.04 0.00 0.00 2.82
2930 3088 4.020617 CACTGCCCTCCCGCTGAA 62.021 66.667 0.00 0.00 0.00 3.02
2931 3089 3.710722 ACTGCCCTCCCGCTGAAG 61.711 66.667 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
272 274 2.116125 GGCCTTTCACCCAGCACT 59.884 61.111 0.00 0.00 0.00 4.40
378 380 2.373524 GAACGCGTTGCTTGCTGACA 62.374 55.000 31.89 0.00 0.00 3.58
516 518 5.506832 GCATTTATCGTTGTAAACTGAACCG 59.493 40.000 0.00 0.00 46.99 4.44
527 529 4.072131 ACCTTGTGAGCATTTATCGTTGT 58.928 39.130 0.00 0.00 0.00 3.32
529 531 4.323417 TCACCTTGTGAGCATTTATCGTT 58.677 39.130 0.00 0.00 37.67 3.85
542 544 4.319046 CGAAATCACTGTTCTCACCTTGTG 60.319 45.833 0.00 0.00 34.45 3.33
550 552 1.087501 GGGCCGAAATCACTGTTCTC 58.912 55.000 0.00 0.00 0.00 2.87
571 573 0.250038 AACGGATAGCGCTGCATGAT 60.250 50.000 22.90 4.34 0.00 2.45
572 574 0.461870 AAACGGATAGCGCTGCATGA 60.462 50.000 22.90 0.00 0.00 3.07
573 575 0.041839 GAAACGGATAGCGCTGCATG 60.042 55.000 22.90 10.14 0.00 4.06
574 576 0.179073 AGAAACGGATAGCGCTGCAT 60.179 50.000 22.90 6.20 0.00 3.96
575 577 0.458260 TAGAAACGGATAGCGCTGCA 59.542 50.000 22.90 0.00 0.00 4.41
576 578 1.721926 GATAGAAACGGATAGCGCTGC 59.278 52.381 22.90 12.14 0.00 5.25
577 579 2.029828 AGGATAGAAACGGATAGCGCTG 60.030 50.000 22.90 5.37 0.00 5.18
578 580 2.240279 AGGATAGAAACGGATAGCGCT 58.760 47.619 17.26 17.26 0.00 5.92
579 581 2.726832 AGGATAGAAACGGATAGCGC 57.273 50.000 0.00 0.00 0.00 5.92
580 582 5.522460 TCAAAAAGGATAGAAACGGATAGCG 59.478 40.000 0.00 0.00 0.00 4.26
581 583 6.920569 TCAAAAAGGATAGAAACGGATAGC 57.079 37.500 0.00 0.00 0.00 2.97
596 598 1.270094 GCGTTTTCCCCCTCAAAAAGG 60.270 52.381 0.00 0.00 45.77 3.11
597 599 1.686587 AGCGTTTTCCCCCTCAAAAAG 59.313 47.619 0.00 0.00 0.00 2.27
598 600 1.410882 CAGCGTTTTCCCCCTCAAAAA 59.589 47.619 0.00 0.00 0.00 1.94
599 601 1.036707 CAGCGTTTTCCCCCTCAAAA 58.963 50.000 0.00 0.00 0.00 2.44
600 602 0.106419 ACAGCGTTTTCCCCCTCAAA 60.106 50.000 0.00 0.00 0.00 2.69
601 603 0.536460 GACAGCGTTTTCCCCCTCAA 60.536 55.000 0.00 0.00 0.00 3.02
602 604 1.072505 GACAGCGTTTTCCCCCTCA 59.927 57.895 0.00 0.00 0.00 3.86
603 605 1.674651 GGACAGCGTTTTCCCCCTC 60.675 63.158 0.00 0.00 0.00 4.30
604 606 2.411765 CTGGACAGCGTTTTCCCCCT 62.412 60.000 1.72 0.00 0.00 4.79
605 607 1.971695 CTGGACAGCGTTTTCCCCC 60.972 63.158 1.72 0.00 0.00 5.40
606 608 0.822121 AACTGGACAGCGTTTTCCCC 60.822 55.000 1.72 0.00 0.00 4.81
607 609 1.029681 AAACTGGACAGCGTTTTCCC 58.970 50.000 1.72 0.00 29.65 3.97
608 610 1.269051 CCAAACTGGACAGCGTTTTCC 60.269 52.381 0.00 0.00 40.96 3.13
609 611 1.269051 CCCAAACTGGACAGCGTTTTC 60.269 52.381 0.00 0.00 40.96 2.29
610 612 0.744281 CCCAAACTGGACAGCGTTTT 59.256 50.000 0.00 0.00 40.96 2.43
611 613 0.395173 ACCCAAACTGGACAGCGTTT 60.395 50.000 0.00 0.00 40.96 3.60
612 614 1.101049 CACCCAAACTGGACAGCGTT 61.101 55.000 0.00 0.00 40.96 4.84
613 615 1.525995 CACCCAAACTGGACAGCGT 60.526 57.895 0.00 0.00 40.96 5.07
614 616 2.908073 GCACCCAAACTGGACAGCG 61.908 63.158 0.00 0.00 40.96 5.18
615 617 1.529244 AGCACCCAAACTGGACAGC 60.529 57.895 0.00 0.00 40.96 4.40
616 618 2.334307 CAGCACCCAAACTGGACAG 58.666 57.895 0.00 0.00 40.96 3.51
617 619 4.577152 CAGCACCCAAACTGGACA 57.423 55.556 0.00 0.00 40.96 4.02
621 623 2.041153 GGTTCCAGCACCCAAACTG 58.959 57.895 0.00 0.00 0.00 3.16
622 624 4.599036 GGTTCCAGCACCCAAACT 57.401 55.556 0.00 0.00 0.00 2.66
633 635 3.636231 CGGGTGCTCTGGGTTCCA 61.636 66.667 0.00 0.00 0.00 3.53
634 636 2.670148 ATCGGGTGCTCTGGGTTCC 61.670 63.158 0.00 0.00 0.00 3.62
635 637 1.450312 CATCGGGTGCTCTGGGTTC 60.450 63.158 0.00 0.00 0.00 3.62
636 638 2.671070 CATCGGGTGCTCTGGGTT 59.329 61.111 0.00 0.00 0.00 4.11
637 639 3.402681 CCATCGGGTGCTCTGGGT 61.403 66.667 0.00 0.00 0.00 4.51
638 640 3.083349 TCCATCGGGTGCTCTGGG 61.083 66.667 0.00 0.00 34.93 4.45
639 641 2.503061 CTCCATCGGGTGCTCTGG 59.497 66.667 0.00 0.00 34.93 3.86
640 642 2.025767 CTCCTCCATCGGGTGCTCTG 62.026 65.000 0.00 0.00 34.93 3.35
641 643 1.760086 CTCCTCCATCGGGTGCTCT 60.760 63.158 0.00 0.00 34.93 4.09
642 644 2.060980 ACTCCTCCATCGGGTGCTC 61.061 63.158 0.00 0.00 34.93 4.26
643 645 2.039624 ACTCCTCCATCGGGTGCT 59.960 61.111 0.00 0.00 34.93 4.40
672 674 2.009774 CGGTTGATGGCTACAGAAAGG 58.990 52.381 0.00 0.00 0.00 3.11
711 713 2.726760 GCTGTCTGCGTAGATATTTCCG 59.273 50.000 6.47 0.00 34.94 4.30
784 787 3.759618 CCTCTAGAACGTCTCCTCTGTTT 59.240 47.826 0.00 0.00 0.00 2.83
886 897 2.022129 GTCGTGTGGGAGTTCTGCG 61.022 63.158 0.00 0.00 0.00 5.18
914 925 4.722535 AGAGCAGGGCGAGGGGAA 62.723 66.667 0.00 0.00 0.00 3.97
954 965 2.108362 CCCCGGTGCCTATCGAAC 59.892 66.667 0.00 0.00 30.05 3.95
1048 1065 2.159181 CGTCATCGTCCACCCAAAC 58.841 57.895 0.00 0.00 0.00 2.93
1123 1140 1.904378 GGGTCGCTAGCTAGGGGAG 60.904 68.421 30.86 7.02 36.94 4.30
1124 1141 2.197875 GGGTCGCTAGCTAGGGGA 59.802 66.667 30.86 18.19 36.94 4.81
1126 1143 2.203308 TCGGGTCGCTAGCTAGGG 60.203 66.667 27.36 27.36 37.58 3.53
1127 1144 2.553727 GGTCGGGTCGCTAGCTAGG 61.554 68.421 22.10 12.16 0.00 3.02
1129 1146 2.517875 GGGTCGGGTCGCTAGCTA 60.518 66.667 13.93 0.00 0.00 3.32
1132 1149 3.885521 GTCGGGTCGGGTCGCTAG 61.886 72.222 0.00 0.00 0.00 3.42
1142 1159 2.442458 GGGAGAGGGAGTCGGGTC 60.442 72.222 0.00 0.00 0.00 4.46
1143 1160 4.077180 GGGGAGAGGGAGTCGGGT 62.077 72.222 0.00 0.00 0.00 5.28
1145 1162 3.959329 AACGGGGAGAGGGAGTCGG 62.959 68.421 0.00 0.00 0.00 4.79
1148 1165 1.000612 GAGAACGGGGAGAGGGAGT 59.999 63.158 0.00 0.00 0.00 3.85
1168 1193 3.861131 GCCTGTTAGCAAGTTCGAGAAGA 60.861 47.826 0.00 0.00 0.00 2.87
1178 1203 1.302511 ACCACCGCCTGTTAGCAAG 60.303 57.895 0.00 0.00 0.00 4.01
1186 1220 3.663176 CACAAGCACCACCGCCTG 61.663 66.667 0.00 0.00 0.00 4.85
1187 1221 4.954970 CCACAAGCACCACCGCCT 62.955 66.667 0.00 0.00 0.00 5.52
1190 1224 2.721231 CAACCACAAGCACCACCG 59.279 61.111 0.00 0.00 0.00 4.94
1193 1227 0.033601 AAGACCAACCACAAGCACCA 60.034 50.000 0.00 0.00 0.00 4.17
1204 1238 3.030652 CGCACACCCAAGACCAAC 58.969 61.111 0.00 0.00 0.00 3.77
1211 1245 3.276091 CGTTCTGCGCACACCCAA 61.276 61.111 5.66 0.00 0.00 4.12
1225 1259 4.704833 AGGCAGCACATCCGCGTT 62.705 61.111 4.92 0.00 36.85 4.84
1228 1262 3.503363 GACAGGCAGCACATCCGC 61.503 66.667 0.00 0.00 0.00 5.54
1274 1308 4.057428 GCGTCTGTGGGAGCGTCT 62.057 66.667 0.00 0.00 0.00 4.18
1275 1309 4.357947 TGCGTCTGTGGGAGCGTC 62.358 66.667 0.00 0.00 0.00 5.19
1276 1310 4.363990 CTGCGTCTGTGGGAGCGT 62.364 66.667 0.00 0.00 0.00 5.07
1372 1415 4.821589 CCTCTCCTCGTTGGCCGC 62.822 72.222 0.00 0.00 36.19 6.53
1515 1561 5.574948 GCTTAACTCTAGGAAATGGGGGAAA 60.575 44.000 0.00 0.00 0.00 3.13
1520 1566 3.118371 ACGGCTTAACTCTAGGAAATGGG 60.118 47.826 0.00 0.00 0.00 4.00
1523 1569 9.543783 CTAATTAACGGCTTAACTCTAGGAAAT 57.456 33.333 0.00 0.00 0.00 2.17
1530 1576 6.373495 CCCAAACTAATTAACGGCTTAACTCT 59.627 38.462 0.00 0.00 0.00 3.24
1535 1581 3.695556 GCCCCAAACTAATTAACGGCTTA 59.304 43.478 0.00 0.00 32.31 3.09
1537 1583 2.097036 GCCCCAAACTAATTAACGGCT 58.903 47.619 0.00 0.00 32.31 5.52
1540 1586 5.449999 GGAATGAGCCCCAAACTAATTAACG 60.450 44.000 0.00 0.00 0.00 3.18
1541 1587 5.449999 CGGAATGAGCCCCAAACTAATTAAC 60.450 44.000 0.00 0.00 0.00 2.01
1549 1595 0.243636 CAACGGAATGAGCCCCAAAC 59.756 55.000 0.00 0.00 0.00 2.93
1555 1601 3.502572 GCTCCAACGGAATGAGCC 58.497 61.111 7.10 0.00 44.45 4.70
1599 1653 6.599244 AGATTAGATTCGTTGATCCAAAGCAA 59.401 34.615 0.00 0.00 0.00 3.91
1602 1656 6.037500 TGCAGATTAGATTCGTTGATCCAAAG 59.962 38.462 0.00 0.00 0.00 2.77
1603 1657 5.879777 TGCAGATTAGATTCGTTGATCCAAA 59.120 36.000 0.00 0.00 0.00 3.28
1703 1767 1.890894 CCATGTTCGAGGTCTCCGT 59.109 57.895 0.00 0.00 0.00 4.69
1705 1769 1.519455 CGCCATGTTCGAGGTCTCC 60.519 63.158 0.00 0.00 0.00 3.71
1816 1880 3.062466 TCGACCCTGTCCTGCTCG 61.062 66.667 0.00 0.00 0.00 5.03
1830 1894 0.674581 CATGGAAAGCTGCTGGTCGA 60.675 55.000 1.35 1.60 0.00 4.20
1875 1939 2.303022 ACCATGTAGTTGTAGTGCTGCT 59.697 45.455 0.00 0.00 0.00 4.24
1876 1940 2.416547 CACCATGTAGTTGTAGTGCTGC 59.583 50.000 0.00 0.00 0.00 5.25
1877 1941 2.416547 GCACCATGTAGTTGTAGTGCTG 59.583 50.000 10.88 0.00 45.40 4.41
1878 1942 2.699954 GCACCATGTAGTTGTAGTGCT 58.300 47.619 10.88 0.00 45.40 4.40
1880 1944 2.416547 GCTGCACCATGTAGTTGTAGTG 59.583 50.000 0.00 0.00 32.42 2.74
1881 1945 2.038426 TGCTGCACCATGTAGTTGTAGT 59.962 45.455 0.00 0.00 32.42 2.73
1882 1946 2.674852 CTGCTGCACCATGTAGTTGTAG 59.325 50.000 0.00 0.00 32.42 2.74
1883 1947 2.698803 CTGCTGCACCATGTAGTTGTA 58.301 47.619 0.00 0.00 32.42 2.41
1884 1948 1.527034 CTGCTGCACCATGTAGTTGT 58.473 50.000 0.00 0.00 32.42 3.32
1885 1949 0.169672 GCTGCTGCACCATGTAGTTG 59.830 55.000 11.11 0.00 39.41 3.16
1886 1950 0.250858 TGCTGCTGCACCATGTAGTT 60.251 50.000 14.93 0.00 45.31 2.24
1943 2007 4.957327 GGATTCTCCTCCTAACACTACACT 59.043 45.833 0.00 0.00 32.53 3.55
1975 2043 2.165998 AGAACACTACTACGGACACCC 58.834 52.381 0.00 0.00 0.00 4.61
2152 2221 0.322008 CCTCTGCTCTGGTCCAAACC 60.322 60.000 0.00 0.00 46.66 3.27
2159 2228 2.901338 TACTACACCTCTGCTCTGGT 57.099 50.000 0.00 0.00 36.96 4.00
2172 2241 3.819337 GACTCGGGATACAGCATACTACA 59.181 47.826 0.00 0.00 39.74 2.74
2174 2243 3.418995 GGACTCGGGATACAGCATACTA 58.581 50.000 0.00 0.00 39.74 1.82
2175 2244 2.240279 GGACTCGGGATACAGCATACT 58.760 52.381 0.00 0.00 39.74 2.12
2179 2248 0.616395 TTGGGACTCGGGATACAGCA 60.616 55.000 0.00 0.00 39.74 4.41
2193 2262 4.215399 CGACTTCTTTTGTAAGCATTGGGA 59.785 41.667 0.00 0.00 0.00 4.37
2198 2267 4.691216 GGACTCGACTTCTTTTGTAAGCAT 59.309 41.667 0.00 0.00 0.00 3.79
2224 2293 1.359848 AGGAGTAACGCGAAATGCAG 58.640 50.000 15.93 0.00 46.97 4.41
2262 2374 6.181206 ACTGGAGCTAGAAATTTCCCTATC 57.819 41.667 14.61 8.24 0.00 2.08
2277 2389 6.069381 AGGGAATACTTATCAAAACTGGAGCT 60.069 38.462 0.00 0.00 0.00 4.09
2284 2396 7.829706 AGGAACAGAGGGAATACTTATCAAAAC 59.170 37.037 0.00 0.00 0.00 2.43
2364 2477 9.746711 CATACGTAGCAAATCTCTAAAATATGC 57.253 33.333 0.08 0.00 0.00 3.14
2408 2530 8.393671 TCGTTCCTAAACATAAGCCTTTTAAA 57.606 30.769 0.00 0.00 34.93 1.52
2410 2532 7.120138 CCTTCGTTCCTAAACATAAGCCTTTTA 59.880 37.037 0.00 0.00 34.93 1.52
2411 2533 6.072119 CCTTCGTTCCTAAACATAAGCCTTTT 60.072 38.462 0.00 0.00 34.93 2.27
2445 2567 9.410556 CAAATTTTCCAATTTACTCCTGTACTG 57.589 33.333 0.00 0.00 40.09 2.74
2446 2568 9.143155 ACAAATTTTCCAATTTACTCCTGTACT 57.857 29.630 0.00 0.00 40.09 2.73
2450 2572 6.147656 GGCACAAATTTTCCAATTTACTCCTG 59.852 38.462 0.00 0.00 40.09 3.86
2463 2585 6.091305 GCATTAAGAGGAAGGCACAAATTTTC 59.909 38.462 0.00 0.00 36.17 2.29
2464 2586 5.934043 GCATTAAGAGGAAGGCACAAATTTT 59.066 36.000 0.00 0.00 36.17 1.82
2465 2587 5.246883 AGCATTAAGAGGAAGGCACAAATTT 59.753 36.000 0.00 0.00 38.56 1.82
2472 2594 6.247229 TGTATAAGCATTAAGAGGAAGGCA 57.753 37.500 0.00 0.00 38.56 4.75
2491 2624 2.570302 AGTTGCCCTAACCTCGTTGTAT 59.430 45.455 0.00 0.00 40.24 2.29
2505 2638 2.092323 GTGGATTGGTTAGAGTTGCCC 58.908 52.381 0.00 0.00 0.00 5.36
2524 2657 2.044492 TCCTCCCCTACAATCTGACAGT 59.956 50.000 1.59 0.00 0.00 3.55
2527 2660 5.888982 TTTATCCTCCCCTACAATCTGAC 57.111 43.478 0.00 0.00 0.00 3.51
2530 2663 5.013183 CCGAATTTATCCTCCCCTACAATCT 59.987 44.000 0.00 0.00 0.00 2.40
2533 2666 3.181448 GCCGAATTTATCCTCCCCTACAA 60.181 47.826 0.00 0.00 0.00 2.41
2534 2667 2.370849 GCCGAATTTATCCTCCCCTACA 59.629 50.000 0.00 0.00 0.00 2.74
2536 2669 2.986050 AGCCGAATTTATCCTCCCCTA 58.014 47.619 0.00 0.00 0.00 3.53
2538 2671 2.658807 AAGCCGAATTTATCCTCCCC 57.341 50.000 0.00 0.00 0.00 4.81
2550 2702 1.153353 CGTAAGCAAGGAAAGCCGAA 58.847 50.000 0.00 0.00 39.96 4.30
2554 2706 3.364664 GGTACAACGTAAGCAAGGAAAGC 60.365 47.826 0.00 0.00 45.62 3.51
2562 2714 1.135315 CGGCTAGGTACAACGTAAGCA 60.135 52.381 0.00 0.00 45.62 3.91
2563 2715 1.133025 TCGGCTAGGTACAACGTAAGC 59.867 52.381 0.00 0.00 45.62 3.09
2566 2718 1.949525 GGATCGGCTAGGTACAACGTA 59.050 52.381 0.00 0.00 0.00 3.57
2571 2723 3.870538 TTAGAGGATCGGCTAGGTACA 57.129 47.619 0.00 0.00 42.67 2.90
2579 2731 0.680061 ATCCGGTTTAGAGGATCGGC 59.320 55.000 0.00 0.00 43.27 5.54
2585 2737 6.569994 CGAAGGTAGATTATCCGGTTTAGAGG 60.570 46.154 0.00 0.00 0.00 3.69
2587 2739 5.278660 GCGAAGGTAGATTATCCGGTTTAGA 60.279 44.000 0.00 0.00 0.00 2.10
2588 2740 4.922103 GCGAAGGTAGATTATCCGGTTTAG 59.078 45.833 0.00 0.00 0.00 1.85
2589 2741 4.586001 AGCGAAGGTAGATTATCCGGTTTA 59.414 41.667 0.00 0.00 35.08 2.01
2590 2742 3.387050 AGCGAAGGTAGATTATCCGGTTT 59.613 43.478 0.00 0.00 35.08 3.27
2592 2744 2.296471 CAGCGAAGGTAGATTATCCGGT 59.704 50.000 0.00 0.00 35.08 5.28
2593 2745 2.557056 TCAGCGAAGGTAGATTATCCGG 59.443 50.000 0.00 0.00 35.08 5.14
2594 2746 3.917329 TCAGCGAAGGTAGATTATCCG 57.083 47.619 0.00 0.00 35.08 4.18
2596 2748 5.234543 GGTGTTTCAGCGAAGGTAGATTATC 59.765 44.000 0.00 0.00 35.08 1.75
2597 2749 5.116882 GGTGTTTCAGCGAAGGTAGATTAT 58.883 41.667 0.00 0.00 35.08 1.28
2598 2750 4.501071 GGTGTTTCAGCGAAGGTAGATTA 58.499 43.478 0.00 0.00 35.08 1.75
2603 2761 0.035739 GGGGTGTTTCAGCGAAGGTA 59.964 55.000 0.00 0.00 35.08 3.08
2610 2768 1.177401 GATTGGAGGGGTGTTTCAGC 58.823 55.000 0.00 0.00 0.00 4.26
2612 2770 2.225017 GGAAGATTGGAGGGGTGTTTCA 60.225 50.000 0.00 0.00 0.00 2.69
2618 2776 5.519808 GATTTTTAGGAAGATTGGAGGGGT 58.480 41.667 0.00 0.00 0.00 4.95
2629 2787 5.390991 GCGAACAGTGAGGATTTTTAGGAAG 60.391 44.000 0.00 0.00 0.00 3.46
2638 2796 2.094659 CGCGCGAACAGTGAGGATT 61.095 57.895 28.94 0.00 0.00 3.01
2680 2838 4.223964 GAATGAAGCCGTCGCCGC 62.224 66.667 0.00 0.00 34.57 6.53
2681 2839 3.564027 GGAATGAAGCCGTCGCCG 61.564 66.667 0.00 0.00 34.57 6.46
2682 2840 3.202706 GGGAATGAAGCCGTCGCC 61.203 66.667 0.00 0.00 34.57 5.54
2686 2844 0.744414 CATGACGGGAATGAAGCCGT 60.744 55.000 0.00 0.00 41.66 5.68
2709 2867 4.923710 TCATCGATGTCGGCGGCG 62.924 66.667 27.15 27.15 40.29 6.46
2710 2868 3.330853 GTCATCGATGTCGGCGGC 61.331 66.667 24.09 3.62 40.29 6.53
2711 2869 1.946156 CAGTCATCGATGTCGGCGG 60.946 63.158 24.09 10.51 40.29 6.13
2712 2870 1.946156 CCAGTCATCGATGTCGGCG 60.946 63.158 24.09 12.58 40.29 6.46
2713 2871 2.240500 GCCAGTCATCGATGTCGGC 61.241 63.158 27.32 27.32 40.29 5.54
2714 2872 1.592669 GGCCAGTCATCGATGTCGG 60.593 63.158 24.09 21.77 40.29 4.79
2715 2873 1.592669 GGGCCAGTCATCGATGTCG 60.593 63.158 24.09 14.34 41.45 4.35
2716 2874 1.040646 TAGGGCCAGTCATCGATGTC 58.959 55.000 24.09 18.89 0.00 3.06
2717 2875 0.753262 GTAGGGCCAGTCATCGATGT 59.247 55.000 24.09 3.86 0.00 3.06
2718 2876 0.034059 GGTAGGGCCAGTCATCGATG 59.966 60.000 19.61 19.61 37.17 3.84
2719 2877 0.105453 AGGTAGGGCCAGTCATCGAT 60.105 55.000 6.18 0.00 40.61 3.59
2720 2878 0.325296 AAGGTAGGGCCAGTCATCGA 60.325 55.000 6.18 0.00 40.61 3.59
2721 2879 0.105039 GAAGGTAGGGCCAGTCATCG 59.895 60.000 6.18 0.00 40.61 3.84
2722 2880 0.105039 CGAAGGTAGGGCCAGTCATC 59.895 60.000 6.18 0.00 40.61 2.92
2723 2881 2.212327 CGAAGGTAGGGCCAGTCAT 58.788 57.895 6.18 0.00 40.61 3.06
2724 2882 3.708210 CGAAGGTAGGGCCAGTCA 58.292 61.111 6.18 0.00 40.61 3.41
2733 2891 4.304419 GGGTTGTCCACTCCGAAGGTAG 62.304 59.091 0.00 0.00 42.23 3.18
2734 2892 2.442072 GGGTTGTCCACTCCGAAGGTA 61.442 57.143 0.00 0.00 42.23 3.08
2735 2893 1.765597 GGGTTGTCCACTCCGAAGGT 61.766 60.000 0.00 0.00 42.23 3.50
2736 2894 1.003718 GGGTTGTCCACTCCGAAGG 60.004 63.158 0.00 0.00 42.78 3.46
2737 2895 1.374252 CGGGTTGTCCACTCCGAAG 60.374 63.158 0.00 0.00 40.04 3.79
2738 2896 2.738480 CGGGTTGTCCACTCCGAA 59.262 61.111 0.00 0.00 40.04 4.30
2739 2897 3.307906 CCGGGTTGTCCACTCCGA 61.308 66.667 0.00 0.00 40.04 4.55
2740 2898 3.307906 TCCGGGTTGTCCACTCCG 61.308 66.667 0.00 0.00 38.36 4.63
2741 2899 2.346365 GTCCGGGTTGTCCACTCC 59.654 66.667 0.00 0.00 34.36 3.85
2742 2900 2.346365 GGTCCGGGTTGTCCACTC 59.654 66.667 0.00 0.00 34.36 3.51
2743 2901 3.246880 GGGTCCGGGTTGTCCACT 61.247 66.667 0.00 0.00 34.36 4.00
2744 2902 2.743126 GAAGGGTCCGGGTTGTCCAC 62.743 65.000 0.00 0.00 34.36 4.02
2745 2903 2.448931 AAGGGTCCGGGTTGTCCA 60.449 61.111 0.00 0.00 34.36 4.02
2746 2904 2.350134 GAAGGGTCCGGGTTGTCC 59.650 66.667 0.00 0.00 0.00 4.02
2747 2905 2.350134 GGAAGGGTCCGGGTTGTC 59.650 66.667 0.00 0.00 33.05 3.18
2755 2913 3.714001 GGGGTGACGGAAGGGTCC 61.714 72.222 0.00 0.00 41.01 4.46
2756 2914 2.926242 TGGGGTGACGGAAGGGTC 60.926 66.667 0.00 0.00 37.45 4.46
2757 2915 3.246880 GTGGGGTGACGGAAGGGT 61.247 66.667 0.00 0.00 0.00 4.34
2758 2916 3.246112 TGTGGGGTGACGGAAGGG 61.246 66.667 0.00 0.00 0.00 3.95
2759 2917 2.347490 CTGTGGGGTGACGGAAGG 59.653 66.667 0.00 0.00 0.00 3.46
2760 2918 2.347490 CCTGTGGGGTGACGGAAG 59.653 66.667 0.00 0.00 0.00 3.46
2761 2919 3.948719 GCCTGTGGGGTGACGGAA 61.949 66.667 0.00 0.00 37.43 4.30
2791 2949 0.953471 TGGTTTCCAATGGCGACGAG 60.953 55.000 0.00 0.00 0.00 4.18
2792 2950 1.071642 TGGTTTCCAATGGCGACGA 59.928 52.632 0.00 0.00 0.00 4.20
2793 2951 1.209127 GTGGTTTCCAATGGCGACG 59.791 57.895 0.00 0.00 34.18 5.12
2794 2952 1.584495 GGTGGTTTCCAATGGCGAC 59.416 57.895 0.00 0.00 34.18 5.19
2795 2953 1.969064 CGGTGGTTTCCAATGGCGA 60.969 57.895 0.00 0.00 34.18 5.54
2796 2954 2.566010 CGGTGGTTTCCAATGGCG 59.434 61.111 0.00 0.00 34.18 5.69
2797 2955 2.261361 GCGGTGGTTTCCAATGGC 59.739 61.111 0.00 0.00 34.18 4.40
2798 2956 1.595093 GAGGCGGTGGTTTCCAATGG 61.595 60.000 0.00 0.00 34.18 3.16
2799 2957 1.595093 GGAGGCGGTGGTTTCCAATG 61.595 60.000 0.00 0.00 34.18 2.82
2800 2958 1.304134 GGAGGCGGTGGTTTCCAAT 60.304 57.895 0.00 0.00 34.18 3.16
2801 2959 2.114411 GGAGGCGGTGGTTTCCAA 59.886 61.111 0.00 0.00 34.18 3.53
2802 2960 4.323477 CGGAGGCGGTGGTTTCCA 62.323 66.667 0.00 0.00 0.00 3.53
2815 2973 3.589654 TTCTTCGGTGCAGGCGGAG 62.590 63.158 0.00 0.00 0.00 4.63
2816 2974 2.668185 TTTTCTTCGGTGCAGGCGGA 62.668 55.000 0.00 0.00 0.00 5.54
2817 2975 2.187599 CTTTTCTTCGGTGCAGGCGG 62.188 60.000 0.00 0.00 0.00 6.13
2818 2976 1.207593 CTTTTCTTCGGTGCAGGCG 59.792 57.895 0.00 0.00 0.00 5.52
2819 2977 0.668535 AACTTTTCTTCGGTGCAGGC 59.331 50.000 0.00 0.00 0.00 4.85
2820 2978 3.058224 CCTAAACTTTTCTTCGGTGCAGG 60.058 47.826 0.00 0.00 0.00 4.85
2821 2979 3.058224 CCCTAAACTTTTCTTCGGTGCAG 60.058 47.826 0.00 0.00 0.00 4.41
2822 2980 2.882137 CCCTAAACTTTTCTTCGGTGCA 59.118 45.455 0.00 0.00 0.00 4.57
2823 2981 3.143728 TCCCTAAACTTTTCTTCGGTGC 58.856 45.455 0.00 0.00 0.00 5.01
2824 2982 5.001232 TCATCCCTAAACTTTTCTTCGGTG 58.999 41.667 0.00 0.00 0.00 4.94
2825 2983 5.237236 TCATCCCTAAACTTTTCTTCGGT 57.763 39.130 0.00 0.00 0.00 4.69
2826 2984 6.569179 TTTCATCCCTAAACTTTTCTTCGG 57.431 37.500 0.00 0.00 0.00 4.30
2827 2985 7.595130 CCTTTTTCATCCCTAAACTTTTCTTCG 59.405 37.037 0.00 0.00 0.00 3.79
2828 2986 8.421784 ACCTTTTTCATCCCTAAACTTTTCTTC 58.578 33.333 0.00 0.00 0.00 2.87
2829 2987 8.319057 ACCTTTTTCATCCCTAAACTTTTCTT 57.681 30.769 0.00 0.00 0.00 2.52
2830 2988 7.015292 GGACCTTTTTCATCCCTAAACTTTTCT 59.985 37.037 0.00 0.00 0.00 2.52
2831 2989 7.152645 GGACCTTTTTCATCCCTAAACTTTTC 58.847 38.462 0.00 0.00 0.00 2.29
2832 2990 6.613679 TGGACCTTTTTCATCCCTAAACTTTT 59.386 34.615 0.00 0.00 0.00 2.27
2833 2991 6.140377 TGGACCTTTTTCATCCCTAAACTTT 58.860 36.000 0.00 0.00 0.00 2.66
2834 2992 5.711698 TGGACCTTTTTCATCCCTAAACTT 58.288 37.500 0.00 0.00 0.00 2.66
2835 2993 5.333566 TGGACCTTTTTCATCCCTAAACT 57.666 39.130 0.00 0.00 0.00 2.66
2836 2994 5.163652 CGATGGACCTTTTTCATCCCTAAAC 60.164 44.000 0.00 0.00 35.22 2.01
2837 2995 4.947388 CGATGGACCTTTTTCATCCCTAAA 59.053 41.667 0.00 0.00 35.22 1.85
2838 2996 4.523083 CGATGGACCTTTTTCATCCCTAA 58.477 43.478 0.00 0.00 35.22 2.69
2839 2997 3.118038 CCGATGGACCTTTTTCATCCCTA 60.118 47.826 0.00 0.00 35.22 3.53
2840 2998 2.357154 CCGATGGACCTTTTTCATCCCT 60.357 50.000 0.00 0.00 35.22 4.20
2841 2999 2.024414 CCGATGGACCTTTTTCATCCC 58.976 52.381 0.00 0.00 35.22 3.85
2842 3000 2.024414 CCCGATGGACCTTTTTCATCC 58.976 52.381 0.00 0.00 35.22 3.51
2843 3001 2.723273 ACCCGATGGACCTTTTTCATC 58.277 47.619 0.00 0.00 35.30 2.92
2844 3002 2.899303 ACCCGATGGACCTTTTTCAT 57.101 45.000 0.00 0.00 34.81 2.57
2845 3003 2.158593 TGAACCCGATGGACCTTTTTCA 60.159 45.455 0.00 0.00 34.81 2.69
2846 3004 2.510613 TGAACCCGATGGACCTTTTTC 58.489 47.619 0.00 0.00 34.81 2.29
2847 3005 2.668144 TGAACCCGATGGACCTTTTT 57.332 45.000 0.00 0.00 34.81 1.94
2848 3006 2.514803 CTTGAACCCGATGGACCTTTT 58.485 47.619 0.00 0.00 34.81 2.27
2849 3007 1.886655 GCTTGAACCCGATGGACCTTT 60.887 52.381 0.00 0.00 34.81 3.11
2850 3008 0.322546 GCTTGAACCCGATGGACCTT 60.323 55.000 0.00 0.00 34.81 3.50
2851 3009 1.201429 AGCTTGAACCCGATGGACCT 61.201 55.000 0.00 0.00 34.81 3.85
2852 3010 0.744771 GAGCTTGAACCCGATGGACC 60.745 60.000 0.00 0.00 34.81 4.46
2853 3011 0.744771 GGAGCTTGAACCCGATGGAC 60.745 60.000 0.00 0.00 34.81 4.02
2854 3012 1.198094 TGGAGCTTGAACCCGATGGA 61.198 55.000 0.00 0.00 34.81 3.41
2855 3013 0.745845 CTGGAGCTTGAACCCGATGG 60.746 60.000 0.00 0.00 37.80 3.51
2856 3014 1.372087 GCTGGAGCTTGAACCCGATG 61.372 60.000 0.00 0.00 38.21 3.84
2857 3015 1.078143 GCTGGAGCTTGAACCCGAT 60.078 57.895 0.00 0.00 38.21 4.18
2858 3016 2.347490 GCTGGAGCTTGAACCCGA 59.653 61.111 0.00 0.00 38.21 5.14
2868 3026 1.817099 CCATGGTTCGAGCTGGAGC 60.817 63.158 2.57 3.93 42.49 4.70
2869 3027 1.817099 GCCATGGTTCGAGCTGGAG 60.817 63.158 14.67 0.00 0.00 3.86
2870 3028 2.123248 TTGCCATGGTTCGAGCTGGA 62.123 55.000 14.67 0.00 0.00 3.86
2871 3029 1.033746 ATTGCCATGGTTCGAGCTGG 61.034 55.000 14.67 3.52 0.00 4.85
2872 3030 0.099968 CATTGCCATGGTTCGAGCTG 59.900 55.000 14.67 0.00 0.00 4.24
2873 3031 1.033746 CCATTGCCATGGTTCGAGCT 61.034 55.000 14.67 0.00 44.81 4.09
2874 3032 1.434696 CCATTGCCATGGTTCGAGC 59.565 57.895 14.67 0.00 44.81 5.03
2913 3071 3.965539 CTTCAGCGGGAGGGCAGTG 62.966 68.421 0.00 0.00 34.64 3.66
2914 3072 3.710722 CTTCAGCGGGAGGGCAGT 61.711 66.667 0.00 0.00 34.64 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.