Multiple sequence alignment - TraesCS5D01G280400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G280400 chr5D 100.000 3398 0 0 1 3398 381909186 381912583 0.000000e+00 6276
1 TraesCS5D01G280400 chr5D 93.548 93 6 0 490 582 382868495 382868403 4.570000e-29 139
2 TraesCS5D01G280400 chr5D 89.720 107 9 2 490 594 447627018 447626912 5.910000e-28 135
3 TraesCS5D01G280400 chr5B 90.903 1616 77 39 1823 3398 458145554 458147139 0.000000e+00 2106
4 TraesCS5D01G280400 chr5B 94.476 887 17 12 580 1442 458144294 458145172 0.000000e+00 1338
5 TraesCS5D01G280400 chr5B 95.738 305 10 3 1413 1714 458145174 458145478 3.940000e-134 488
6 TraesCS5D01G280400 chr5B 86.880 343 42 2 3 345 458143543 458143882 6.880000e-102 381
7 TraesCS5D01G280400 chr5A 92.712 1180 34 26 573 1714 482118047 482119212 0.000000e+00 1655
8 TraesCS5D01G280400 chr5A 95.623 1028 30 7 1822 2846 482119290 482120305 0.000000e+00 1635
9 TraesCS5D01G280400 chr5A 91.560 545 30 10 2867 3398 482120487 482121028 0.000000e+00 737
10 TraesCS5D01G280400 chr5A 92.073 492 35 2 3 491 482117558 482118048 0.000000e+00 689
11 TraesCS5D01G280400 chrUn 100.000 393 0 0 988 1380 479539515 479539907 0.000000e+00 726
12 TraesCS5D01G280400 chrUn 91.837 98 8 0 482 579 100223831 100223734 1.640000e-28 137
13 TraesCS5D01G280400 chr7D 84.364 275 41 2 1133 1406 220507332 220507605 5.590000e-68 268
14 TraesCS5D01G280400 chr7D 90.566 106 8 2 481 586 448337055 448336952 4.570000e-29 139
15 TraesCS5D01G280400 chr4A 92.079 101 5 3 490 588 69329855 69329954 4.570000e-29 139
16 TraesCS5D01G280400 chr2D 93.548 93 6 0 482 574 454026171 454026263 4.570000e-29 139
17 TraesCS5D01G280400 chr2D 89.524 105 11 0 490 594 574413615 574413511 2.130000e-27 134
18 TraesCS5D01G280400 chr6D 91.089 101 9 0 479 579 340997485 340997385 1.640000e-28 137
19 TraesCS5D01G280400 chr2B 90.385 104 9 1 490 593 63783726 63783828 5.910000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G280400 chr5D 381909186 381912583 3397 False 6276.00 6276 100.00000 1 3398 1 chr5D.!!$F1 3397
1 TraesCS5D01G280400 chr5B 458143543 458147139 3596 False 1078.25 2106 91.99925 3 3398 4 chr5B.!!$F1 3395
2 TraesCS5D01G280400 chr5A 482117558 482121028 3470 False 1179.00 1655 92.99200 3 3398 4 chr5A.!!$F1 3395

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
505 766 0.042131 TGTTACTCCCTCCGTCCCAT 59.958 55.0 0.0 0.0 0.00 4.00 F
1451 1778 0.410663 TTCTACTTCTCCGGTGGGGA 59.589 55.0 0.0 0.0 44.68 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1481 1808 0.240411 CAACAGGAAGCAGAGCAAGC 59.76 55.0 0.0 0.0 0.00 4.01 R
2907 3439 0.250424 TGCCAGTATGATCCATGCCG 60.25 55.0 0.0 0.0 39.69 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 4.119862 GGCTGAGTTATCAACTATTGCGA 58.880 43.478 0.00 0.00 43.03 5.10
152 156 2.916702 TGACAGTGAGTGTTGAGCAT 57.083 45.000 0.00 0.00 40.56 3.79
162 166 1.002468 GTGTTGAGCATGTTCGCTTGT 60.002 47.619 5.02 0.00 44.01 3.16
168 172 4.754322 TGAGCATGTTCGCTTGTCTTATA 58.246 39.130 5.02 0.00 44.01 0.98
179 183 4.201589 CGCTTGTCTTATACGTTCTTGGTG 60.202 45.833 0.00 0.00 0.00 4.17
218 222 3.923017 ATGAAGGTTAGTTGTGCTTGC 57.077 42.857 0.00 0.00 0.00 4.01
227 231 1.134226 GTTGTGCTTGCATTGCTCAC 58.866 50.000 10.49 14.34 34.35 3.51
316 320 1.990799 TTGCAGACCAGATAACGTCG 58.009 50.000 0.00 0.00 34.10 5.12
320 324 1.743958 CAGACCAGATAACGTCGGAGT 59.256 52.381 0.00 0.00 34.10 3.85
408 664 5.420725 AAAATTAAGACAAATGGGGAGGC 57.579 39.130 0.00 0.00 0.00 4.70
435 691 1.643880 GCTTTTCATGGAAATGCCCG 58.356 50.000 14.91 0.00 42.73 6.13
491 752 6.801575 TCCTGAATTTCCACTTGTTTGTTAC 58.198 36.000 0.00 0.00 0.00 2.50
493 754 6.918022 CCTGAATTTCCACTTGTTTGTTACTC 59.082 38.462 0.00 0.00 0.00 2.59
494 755 6.801575 TGAATTTCCACTTGTTTGTTACTCC 58.198 36.000 0.00 0.00 0.00 3.85
495 756 5.784578 ATTTCCACTTGTTTGTTACTCCC 57.215 39.130 0.00 0.00 0.00 4.30
496 757 4.513406 TTCCACTTGTTTGTTACTCCCT 57.487 40.909 0.00 0.00 0.00 4.20
497 758 4.081322 TCCACTTGTTTGTTACTCCCTC 57.919 45.455 0.00 0.00 0.00 4.30
498 759 3.146847 CCACTTGTTTGTTACTCCCTCC 58.853 50.000 0.00 0.00 0.00 4.30
499 760 2.806244 CACTTGTTTGTTACTCCCTCCG 59.194 50.000 0.00 0.00 0.00 4.63
500 761 2.436911 ACTTGTTTGTTACTCCCTCCGT 59.563 45.455 0.00 0.00 0.00 4.69
501 762 2.825861 TGTTTGTTACTCCCTCCGTC 57.174 50.000 0.00 0.00 0.00 4.79
502 763 1.345415 TGTTTGTTACTCCCTCCGTCC 59.655 52.381 0.00 0.00 0.00 4.79
503 764 0.978907 TTTGTTACTCCCTCCGTCCC 59.021 55.000 0.00 0.00 0.00 4.46
504 765 0.178926 TTGTTACTCCCTCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
505 766 0.042131 TGTTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
506 767 1.288633 TGTTACTCCCTCCGTCCCATA 59.711 52.381 0.00 0.00 0.00 2.74
507 768 2.292389 TGTTACTCCCTCCGTCCCATAA 60.292 50.000 0.00 0.00 0.00 1.90
508 769 2.970640 GTTACTCCCTCCGTCCCATAAT 59.029 50.000 0.00 0.00 0.00 1.28
509 770 4.154942 GTTACTCCCTCCGTCCCATAATA 58.845 47.826 0.00 0.00 0.00 0.98
510 771 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
511 772 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
512 773 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
513 774 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
514 775 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
515 776 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
516 777 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
517 778 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
518 779 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
519 780 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
520 781 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
521 782 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
522 783 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
548 809 5.730296 ACTAGTGTAGTGTCAAAGATGCT 57.270 39.130 0.00 0.00 37.69 3.79
549 810 5.715070 ACTAGTGTAGTGTCAAAGATGCTC 58.285 41.667 0.00 0.00 37.69 4.26
550 811 4.881019 AGTGTAGTGTCAAAGATGCTCT 57.119 40.909 0.00 0.00 0.00 4.09
551 812 5.220710 AGTGTAGTGTCAAAGATGCTCTT 57.779 39.130 0.00 0.00 38.59 2.85
552 813 6.346477 AGTGTAGTGTCAAAGATGCTCTTA 57.654 37.500 0.00 0.00 35.27 2.10
553 814 6.940739 AGTGTAGTGTCAAAGATGCTCTTAT 58.059 36.000 0.00 0.00 35.27 1.73
554 815 8.067751 AGTGTAGTGTCAAAGATGCTCTTATA 57.932 34.615 0.00 0.00 35.27 0.98
555 816 8.700051 AGTGTAGTGTCAAAGATGCTCTTATAT 58.300 33.333 0.00 0.00 35.27 0.86
556 817 9.319143 GTGTAGTGTCAAAGATGCTCTTATATT 57.681 33.333 0.00 0.00 35.27 1.28
560 821 9.499479 AGTGTCAAAGATGCTCTTATATTATGG 57.501 33.333 0.00 0.00 35.27 2.74
561 822 8.725148 GTGTCAAAGATGCTCTTATATTATGGG 58.275 37.037 0.00 0.00 35.27 4.00
562 823 7.884877 TGTCAAAGATGCTCTTATATTATGGGG 59.115 37.037 0.00 0.00 35.27 4.96
563 824 6.886459 TCAAAGATGCTCTTATATTATGGGGC 59.114 38.462 0.00 0.00 35.27 5.80
564 825 5.028549 AGATGCTCTTATATTATGGGGCG 57.971 43.478 0.00 0.00 0.00 6.13
565 826 4.716784 AGATGCTCTTATATTATGGGGCGA 59.283 41.667 0.00 0.00 0.00 5.54
566 827 4.901197 TGCTCTTATATTATGGGGCGAA 57.099 40.909 0.00 0.00 0.00 4.70
567 828 4.832248 TGCTCTTATATTATGGGGCGAAG 58.168 43.478 0.00 0.00 0.00 3.79
568 829 4.192317 GCTCTTATATTATGGGGCGAAGG 58.808 47.826 0.00 0.00 0.00 3.46
569 830 4.770795 CTCTTATATTATGGGGCGAAGGG 58.229 47.826 0.00 0.00 0.00 3.95
570 831 4.431378 TCTTATATTATGGGGCGAAGGGA 58.569 43.478 0.00 0.00 0.00 4.20
571 832 4.469945 TCTTATATTATGGGGCGAAGGGAG 59.530 45.833 0.00 0.00 0.00 4.30
572 833 2.112279 TATTATGGGGCGAAGGGAGT 57.888 50.000 0.00 0.00 0.00 3.85
573 834 2.112279 ATTATGGGGCGAAGGGAGTA 57.888 50.000 0.00 0.00 0.00 2.59
574 835 2.112279 TTATGGGGCGAAGGGAGTAT 57.888 50.000 0.00 0.00 0.00 2.12
575 836 2.112279 TATGGGGCGAAGGGAGTATT 57.888 50.000 0.00 0.00 0.00 1.89
576 837 2.112279 ATGGGGCGAAGGGAGTATTA 57.888 50.000 0.00 0.00 0.00 0.98
577 838 2.112279 TGGGGCGAAGGGAGTATTAT 57.888 50.000 0.00 0.00 0.00 1.28
578 839 3.263369 TGGGGCGAAGGGAGTATTATA 57.737 47.619 0.00 0.00 0.00 0.98
585 846 6.094742 GGGCGAAGGGAGTATTATAGTAGTAC 59.905 46.154 0.00 0.00 0.00 2.73
603 864 5.338614 AGTACAAGAAACACGGAATTTCG 57.661 39.130 4.10 4.10 40.35 3.46
701 962 2.811317 CAGCTCTTGCCGTCGTCC 60.811 66.667 0.00 0.00 40.80 4.79
703 964 2.507324 GCTCTTGCCGTCGTCCTC 60.507 66.667 0.00 0.00 0.00 3.71
755 1022 0.609681 ACCGACACCACTCCTCTCTC 60.610 60.000 0.00 0.00 0.00 3.20
760 1027 2.443016 CCACTCCTCTCTCCCCCG 60.443 72.222 0.00 0.00 0.00 5.73
762 1029 2.947785 ACTCCTCTCTCCCCCGGT 60.948 66.667 0.00 0.00 0.00 5.28
763 1030 2.123640 CTCCTCTCTCCCCCGGTC 60.124 72.222 0.00 0.00 0.00 4.79
764 1031 4.124943 TCCTCTCTCCCCCGGTCG 62.125 72.222 0.00 0.00 0.00 4.79
863 1130 3.144506 CATTCCCCAAAGATCCAGATCG 58.855 50.000 2.08 0.00 42.48 3.69
874 1141 1.375396 CCAGATCGCACCAAACGGA 60.375 57.895 0.00 0.00 0.00 4.69
880 1147 2.594592 GCACCAAACGGAGGCAGT 60.595 61.111 0.00 0.00 0.00 4.40
938 1205 3.938048 AGATCGAGCTGAGCTGCT 58.062 55.556 13.71 0.00 43.03 4.24
1380 1672 3.452786 CTCTGCGCCTTCCTCGGA 61.453 66.667 4.18 0.00 0.00 4.55
1451 1778 0.410663 TTCTACTTCTCCGGTGGGGA 59.589 55.000 0.00 0.00 44.68 4.81
1472 1799 1.063806 GCTCGATTCCGATTCCGATG 58.936 55.000 0.00 0.00 44.62 3.84
1479 1806 1.595382 CCGATTCCGATGGACTGCC 60.595 63.158 0.00 0.00 38.22 4.85
1481 1808 1.595382 GATTCCGATGGACTGCCGG 60.595 63.158 0.00 0.00 44.22 6.13
1502 1829 1.174712 TTGCTCTGCTTCCTGTTGCC 61.175 55.000 0.00 0.00 0.00 4.52
1714 2042 2.326428 CCATCCCCGTCTACTGGTAAT 58.674 52.381 0.00 0.00 0.00 1.89
1715 2043 2.704065 CCATCCCCGTCTACTGGTAATT 59.296 50.000 0.00 0.00 0.00 1.40
1716 2044 3.899360 CCATCCCCGTCTACTGGTAATTA 59.101 47.826 0.00 0.00 0.00 1.40
1717 2045 4.345837 CCATCCCCGTCTACTGGTAATTAA 59.654 45.833 0.00 0.00 0.00 1.40
1718 2046 5.012768 CCATCCCCGTCTACTGGTAATTAAT 59.987 44.000 0.00 0.00 0.00 1.40
1720 2048 6.906157 TCCCCGTCTACTGGTAATTAATAG 57.094 41.667 0.00 0.00 0.00 1.73
1721 2049 6.613699 TCCCCGTCTACTGGTAATTAATAGA 58.386 40.000 4.69 0.43 0.00 1.98
1722 2050 6.718454 TCCCCGTCTACTGGTAATTAATAGAG 59.282 42.308 4.69 0.00 0.00 2.43
1723 2051 6.388278 CCCGTCTACTGGTAATTAATAGAGC 58.612 44.000 4.69 0.00 0.00 4.09
1725 2053 7.306953 CCGTCTACTGGTAATTAATAGAGCTC 58.693 42.308 5.27 5.27 0.00 4.09
1726 2054 7.040617 CCGTCTACTGGTAATTAATAGAGCTCA 60.041 40.741 17.77 2.09 0.00 4.26
1727 2055 8.516234 CGTCTACTGGTAATTAATAGAGCTCAT 58.484 37.037 17.77 4.64 0.00 2.90
1728 2056 9.849166 GTCTACTGGTAATTAATAGAGCTCATC 57.151 37.037 17.77 0.00 0.00 2.92
1729 2057 9.588096 TCTACTGGTAATTAATAGAGCTCATCA 57.412 33.333 17.77 0.23 0.00 3.07
1730 2058 9.632807 CTACTGGTAATTAATAGAGCTCATCAC 57.367 37.037 17.77 0.00 0.00 3.06
1731 2059 8.256356 ACTGGTAATTAATAGAGCTCATCACT 57.744 34.615 17.77 0.00 0.00 3.41
1733 2061 9.853555 CTGGTAATTAATAGAGCTCATCACTAG 57.146 37.037 17.77 0.00 0.00 2.57
1734 2062 9.588096 TGGTAATTAATAGAGCTCATCACTAGA 57.412 33.333 17.77 0.00 0.00 2.43
1754 2095 4.511527 AGATTCATCACAGTTCTTGCGAT 58.488 39.130 0.00 0.00 0.00 4.58
1758 2103 0.250252 TCACAGTTCTTGCGATGCCA 60.250 50.000 0.00 0.00 0.00 4.92
1759 2104 0.592637 CACAGTTCTTGCGATGCCAA 59.407 50.000 0.00 0.00 0.00 4.52
1760 2105 1.200716 CACAGTTCTTGCGATGCCAAT 59.799 47.619 0.00 0.00 0.00 3.16
1761 2106 1.470098 ACAGTTCTTGCGATGCCAATC 59.530 47.619 0.00 0.00 0.00 2.67
1773 2118 4.798263 GCGATGCCAATCAATTGATCCATT 60.798 41.667 20.95 3.79 40.14 3.16
1774 2119 5.565242 GCGATGCCAATCAATTGATCCATTA 60.565 40.000 20.95 7.88 40.14 1.90
1775 2120 6.448852 CGATGCCAATCAATTGATCCATTAA 58.551 36.000 20.95 6.24 40.14 1.40
1779 2124 7.042950 TGCCAATCAATTGATCCATTAAAGTG 58.957 34.615 20.95 11.75 40.14 3.16
1780 2125 6.480981 GCCAATCAATTGATCCATTAAAGTGG 59.519 38.462 20.95 19.86 40.14 4.00
1781 2126 7.633334 GCCAATCAATTGATCCATTAAAGTGGA 60.633 37.037 24.34 0.29 41.74 4.02
1782 2127 8.259411 CCAATCAATTGATCCATTAAAGTGGAA 58.741 33.333 20.95 0.00 41.39 3.53
1792 2137 7.754851 TCCATTAAAGTGGAAGTAGAAAACC 57.245 36.000 0.00 0.00 45.03 3.27
1793 2138 7.291566 TCCATTAAAGTGGAAGTAGAAAACCA 58.708 34.615 0.00 0.00 45.03 3.67
1794 2139 7.447238 TCCATTAAAGTGGAAGTAGAAAACCAG 59.553 37.037 0.00 0.00 45.03 4.00
1795 2140 7.230712 CCATTAAAGTGGAAGTAGAAAACCAGT 59.769 37.037 0.00 0.00 42.02 4.00
1796 2141 8.630037 CATTAAAGTGGAAGTAGAAAACCAGTT 58.370 33.333 0.00 0.00 44.60 3.16
1797 2142 6.694877 AAAGTGGAAGTAGAAAACCAGTTC 57.305 37.500 0.00 0.00 42.75 3.01
1798 2143 4.377897 AGTGGAAGTAGAAAACCAGTTCG 58.622 43.478 0.00 0.00 32.97 3.95
1799 2144 3.059120 GTGGAAGTAGAAAACCAGTTCGC 60.059 47.826 0.00 0.00 32.89 4.70
1800 2145 3.181458 TGGAAGTAGAAAACCAGTTCGCT 60.181 43.478 0.00 0.00 32.50 4.93
1801 2146 3.186613 GGAAGTAGAAAACCAGTTCGCTG 59.813 47.826 0.00 0.00 44.59 5.18
1812 2157 1.730501 AGTTCGCTGATGTGTGATGG 58.269 50.000 0.00 0.00 0.00 3.51
1813 2158 0.729116 GTTCGCTGATGTGTGATGGG 59.271 55.000 0.00 0.00 0.00 4.00
1814 2159 0.392863 TTCGCTGATGTGTGATGGGG 60.393 55.000 0.00 0.00 0.00 4.96
1815 2160 1.078214 CGCTGATGTGTGATGGGGT 60.078 57.895 0.00 0.00 0.00 4.95
1816 2161 1.091771 CGCTGATGTGTGATGGGGTC 61.092 60.000 0.00 0.00 0.00 4.46
1817 2162 0.254178 GCTGATGTGTGATGGGGTCT 59.746 55.000 0.00 0.00 0.00 3.85
1818 2163 1.745141 GCTGATGTGTGATGGGGTCTC 60.745 57.143 0.00 0.00 0.00 3.36
1819 2164 0.911769 TGATGTGTGATGGGGTCTCC 59.088 55.000 0.00 0.00 0.00 3.71
2084 2429 4.819761 GCGAGTCCATCTGCGGCA 62.820 66.667 1.29 1.29 0.00 5.69
2280 2625 1.135315 GCTAGCACGCACCATGTTG 59.865 57.895 10.63 0.00 0.00 3.33
2281 2626 1.577328 GCTAGCACGCACCATGTTGT 61.577 55.000 10.63 0.00 0.00 3.32
2282 2627 0.874390 CTAGCACGCACCATGTTGTT 59.126 50.000 0.00 0.00 0.00 2.83
2283 2628 0.590682 TAGCACGCACCATGTTGTTG 59.409 50.000 0.00 0.00 0.00 3.33
2284 2629 1.065600 GCACGCACCATGTTGTTGT 59.934 52.632 0.00 0.00 0.00 3.32
2290 2635 3.815962 ACGCACCATGTTGTTGTTGTATA 59.184 39.130 0.00 0.00 0.00 1.47
2315 2660 2.677836 GTTCAGATATTCTTGCCACGCA 59.322 45.455 0.00 0.00 36.47 5.24
2316 2661 2.279741 TCAGATATTCTTGCCACGCAC 58.720 47.619 0.00 0.00 38.71 5.34
2317 2662 1.331756 CAGATATTCTTGCCACGCACC 59.668 52.381 0.00 0.00 38.71 5.01
2318 2663 1.065491 AGATATTCTTGCCACGCACCA 60.065 47.619 0.00 0.00 38.71 4.17
2319 2664 1.949525 GATATTCTTGCCACGCACCAT 59.050 47.619 0.00 0.00 38.71 3.55
2320 2665 1.832883 TATTCTTGCCACGCACCATT 58.167 45.000 0.00 0.00 38.71 3.16
2321 2666 0.244450 ATTCTTGCCACGCACCATTG 59.756 50.000 0.00 0.00 38.71 2.82
2322 2667 2.419057 TTCTTGCCACGCACCATTGC 62.419 55.000 0.00 0.00 46.21 3.56
2350 2696 1.075970 TCCCCGAGCTATGCTGAGT 60.076 57.895 0.00 0.00 39.88 3.41
2421 2780 3.629398 GCTCTGTATGTGAATTGGGGAAG 59.371 47.826 0.00 0.00 0.00 3.46
2432 2791 1.133809 TTGGGGAAGCTGTAGCCTGT 61.134 55.000 0.00 0.00 43.38 4.00
2534 2894 5.371526 ACTGAACATAGGCAACATATCCTG 58.628 41.667 0.00 0.00 41.41 3.86
2657 3017 0.776810 TTGAGCCATTTGTGAGGGGA 59.223 50.000 0.00 0.00 0.00 4.81
2691 3052 2.637872 ACGTGATCCAAGGAAGGAAAGA 59.362 45.455 0.00 0.00 41.92 2.52
2693 3054 3.307059 CGTGATCCAAGGAAGGAAAGAGT 60.307 47.826 0.00 0.00 41.92 3.24
2695 3056 3.055819 TGATCCAAGGAAGGAAAGAGTCG 60.056 47.826 0.00 0.00 41.92 4.18
2735 3096 5.124645 TGTTTTGAACCTAGGAAAACGCTA 58.875 37.500 22.57 10.32 40.77 4.26
2809 3177 9.769093 GAAGCTTAACGAAATTTTGCTAGAATA 57.231 29.630 0.00 0.00 30.55 1.75
2846 3215 6.662414 TTATGTATGGAAAACGAAGCTCTG 57.338 37.500 0.00 0.00 0.00 3.35
2847 3216 4.002906 TGTATGGAAAACGAAGCTCTGT 57.997 40.909 0.00 0.00 0.00 3.41
2848 3217 4.385825 TGTATGGAAAACGAAGCTCTGTT 58.614 39.130 0.00 0.00 0.00 3.16
2849 3218 4.451096 TGTATGGAAAACGAAGCTCTGTTC 59.549 41.667 4.23 0.00 0.00 3.18
2864 3394 6.616947 AGCTCTGTTCGAATCATATAGTAGC 58.383 40.000 0.00 1.38 0.00 3.58
2865 3395 6.432783 AGCTCTGTTCGAATCATATAGTAGCT 59.567 38.462 0.00 3.62 0.00 3.32
2869 3399 7.382488 TCTGTTCGAATCATATAGTAGCTTTGC 59.618 37.037 0.00 0.00 0.00 3.68
2920 3452 3.274095 TGTTGAACGGCATGGATCATA 57.726 42.857 0.00 0.00 0.00 2.15
2933 3465 6.548622 GGCATGGATCATACTGGCAAATATAT 59.451 38.462 0.00 0.00 34.59 0.86
2969 3511 3.050703 CGCAGAGAATAACGCAGGT 57.949 52.632 0.00 0.00 0.00 4.00
2986 3528 1.237285 GGTGCCACTGCTACAACTGG 61.237 60.000 0.00 0.00 38.71 4.00
3043 3585 3.694072 ACATACAGCACAACACAACAGTT 59.306 39.130 0.00 0.00 0.00 3.16
3056 3598 2.028385 ACAACAGTTCCCTACCGACATC 60.028 50.000 0.00 0.00 0.00 3.06
3073 3615 5.460419 CCGACATCTCTGTATCTTACAAAGC 59.540 44.000 0.00 0.00 38.38 3.51
3194 3736 7.758076 CCGATACTACAACATTCAGTCAACTTA 59.242 37.037 0.00 0.00 0.00 2.24
3216 3759 3.818773 ACTGTCCCAAATCGTCGAATTTT 59.181 39.130 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.470821 GGCATGAGCAGAAAATGATGC 58.529 47.619 0.00 0.00 44.61 3.91
60 61 7.771361 TGTTTATCCCTTCGCAATAGTTGATAA 59.229 33.333 0.00 0.00 0.00 1.75
152 156 4.801891 AGAACGTATAAGACAAGCGAACA 58.198 39.130 0.00 0.00 0.00 3.18
162 166 9.309516 GATTTCATACACCAAGAACGTATAAGA 57.690 33.333 0.00 0.00 0.00 2.10
168 172 5.181245 CCTTGATTTCATACACCAAGAACGT 59.819 40.000 0.00 0.00 37.10 3.99
179 183 9.561069 ACCTTCATATGTACCTTGATTTCATAC 57.439 33.333 1.90 0.00 0.00 2.39
218 222 3.721035 TGATAGTCGGATGTGAGCAATG 58.279 45.455 0.00 0.00 0.00 2.82
227 231 7.042658 GGCTTACTTAGTTTTGATAGTCGGATG 60.043 40.741 0.00 0.00 0.00 3.51
316 320 0.385390 CCATGGCGGCATAAAACTCC 59.615 55.000 25.33 0.00 0.00 3.85
320 324 1.261480 ACAACCATGGCGGCATAAAA 58.739 45.000 25.33 0.00 39.03 1.52
408 664 3.699411 TTCCATGAAAAGCCCCAAATG 57.301 42.857 0.00 0.00 0.00 2.32
435 691 1.263217 CGGTTTACACACTTGCACCTC 59.737 52.381 0.00 0.00 0.00 3.85
491 752 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
493 754 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
494 755 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
495 756 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
496 757 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
497 758 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
498 759 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
526 787 5.715070 GAGCATCTTTGACACTACACTAGT 58.285 41.667 0.00 0.00 40.28 2.57
543 804 5.023533 TCGCCCCATAATATAAGAGCATC 57.976 43.478 0.00 0.00 0.00 3.91
544 805 5.431765 CTTCGCCCCATAATATAAGAGCAT 58.568 41.667 0.00 0.00 0.00 3.79
545 806 4.323485 CCTTCGCCCCATAATATAAGAGCA 60.323 45.833 0.00 0.00 0.00 4.26
546 807 4.192317 CCTTCGCCCCATAATATAAGAGC 58.808 47.826 0.00 0.00 0.00 4.09
547 808 4.469945 TCCCTTCGCCCCATAATATAAGAG 59.530 45.833 0.00 0.00 0.00 2.85
548 809 4.431378 TCCCTTCGCCCCATAATATAAGA 58.569 43.478 0.00 0.00 0.00 2.10
549 810 4.225267 ACTCCCTTCGCCCCATAATATAAG 59.775 45.833 0.00 0.00 0.00 1.73
550 811 4.172807 ACTCCCTTCGCCCCATAATATAA 58.827 43.478 0.00 0.00 0.00 0.98
551 812 3.798515 ACTCCCTTCGCCCCATAATATA 58.201 45.455 0.00 0.00 0.00 0.86
552 813 2.632537 ACTCCCTTCGCCCCATAATAT 58.367 47.619 0.00 0.00 0.00 1.28
553 814 2.112279 ACTCCCTTCGCCCCATAATA 57.888 50.000 0.00 0.00 0.00 0.98
554 815 2.112279 TACTCCCTTCGCCCCATAAT 57.888 50.000 0.00 0.00 0.00 1.28
555 816 2.112279 ATACTCCCTTCGCCCCATAA 57.888 50.000 0.00 0.00 0.00 1.90
556 817 2.112279 AATACTCCCTTCGCCCCATA 57.888 50.000 0.00 0.00 0.00 2.74
557 818 2.112279 TAATACTCCCTTCGCCCCAT 57.888 50.000 0.00 0.00 0.00 4.00
558 819 2.112279 ATAATACTCCCTTCGCCCCA 57.888 50.000 0.00 0.00 0.00 4.96
559 820 3.171528 ACTATAATACTCCCTTCGCCCC 58.828 50.000 0.00 0.00 0.00 5.80
560 821 5.015515 ACTACTATAATACTCCCTTCGCCC 58.984 45.833 0.00 0.00 0.00 6.13
561 822 6.656693 TGTACTACTATAATACTCCCTTCGCC 59.343 42.308 0.00 0.00 0.00 5.54
562 823 7.678947 TGTACTACTATAATACTCCCTTCGC 57.321 40.000 0.00 0.00 0.00 4.70
563 824 9.499479 TCTTGTACTACTATAATACTCCCTTCG 57.501 37.037 0.00 0.00 0.00 3.79
576 837 9.148104 GAAATTCCGTGTTTCTTGTACTACTAT 57.852 33.333 0.00 0.00 33.79 2.12
577 838 7.326789 CGAAATTCCGTGTTTCTTGTACTACTA 59.673 37.037 0.00 0.00 34.28 1.82
578 839 6.145048 CGAAATTCCGTGTTTCTTGTACTACT 59.855 38.462 0.00 0.00 34.28 2.57
585 846 2.031157 AGCCGAAATTCCGTGTTTCTTG 60.031 45.455 0.00 0.00 34.28 3.02
698 959 1.000612 AAGACGAGGGAGGGAGGAC 59.999 63.158 0.00 0.00 0.00 3.85
699 960 1.000486 CAAGACGAGGGAGGGAGGA 60.000 63.158 0.00 0.00 0.00 3.71
701 962 2.194460 GTCAAGACGAGGGAGGGAG 58.806 63.158 0.00 0.00 0.00 4.30
863 1130 2.594592 ACTGCCTCCGTTTGGTGC 60.595 61.111 0.00 0.00 36.30 5.01
874 1141 1.381056 AGCTCGATCTGGACTGCCT 60.381 57.895 0.00 0.00 34.31 4.75
880 1147 1.527148 CTCGGGAGCTCGATCTGGA 60.527 63.158 7.83 0.00 38.55 3.86
905 1172 2.606795 CGATCTGGATCTCGCTTCTTCC 60.607 54.545 8.65 0.00 35.72 3.46
985 1262 2.351111 GCTTCATCTTCTTGCTCTTCCG 59.649 50.000 0.00 0.00 0.00 4.30
1392 1684 5.819379 ACAAGCATACATACATGAGGTCTTG 59.181 40.000 0.00 7.03 34.91 3.02
1472 1799 4.400961 AGAGCAAGCCGGCAGTCC 62.401 66.667 31.54 13.77 35.83 3.85
1479 1806 2.046507 AGGAAGCAGAGCAAGCCG 60.047 61.111 0.00 0.00 0.00 5.52
1481 1808 0.240411 CAACAGGAAGCAGAGCAAGC 59.760 55.000 0.00 0.00 0.00 4.01
1502 1829 2.028567 GGATCTAATCGAAGCAGGGGAG 60.029 54.545 0.00 0.00 0.00 4.30
1701 2029 7.872881 TGAGCTCTATTAATTACCAGTAGACG 58.127 38.462 16.19 0.00 0.00 4.18
1715 2043 9.525826 TGATGAATCTAGTGATGAGCTCTATTA 57.474 33.333 16.19 1.06 32.44 0.98
1716 2044 8.306038 GTGATGAATCTAGTGATGAGCTCTATT 58.694 37.037 16.19 0.00 32.44 1.73
1717 2045 7.450944 TGTGATGAATCTAGTGATGAGCTCTAT 59.549 37.037 16.19 6.82 32.44 1.98
1718 2046 6.774656 TGTGATGAATCTAGTGATGAGCTCTA 59.225 38.462 16.19 1.49 32.44 2.43
1720 2048 5.840715 TGTGATGAATCTAGTGATGAGCTC 58.159 41.667 6.82 6.82 32.44 4.09
1721 2049 5.363292 ACTGTGATGAATCTAGTGATGAGCT 59.637 40.000 0.00 0.00 32.44 4.09
1722 2050 5.599732 ACTGTGATGAATCTAGTGATGAGC 58.400 41.667 0.00 0.00 32.44 4.26
1723 2051 7.490840 AGAACTGTGATGAATCTAGTGATGAG 58.509 38.462 0.00 0.00 32.44 2.90
1725 2053 7.465647 GCAAGAACTGTGATGAATCTAGTGATG 60.466 40.741 0.00 4.22 32.44 3.07
1726 2054 6.538021 GCAAGAACTGTGATGAATCTAGTGAT 59.462 38.462 0.00 0.00 33.70 3.06
1727 2055 5.871524 GCAAGAACTGTGATGAATCTAGTGA 59.128 40.000 0.00 0.00 0.00 3.41
1728 2056 5.220359 CGCAAGAACTGTGATGAATCTAGTG 60.220 44.000 0.00 0.00 37.79 2.74
1729 2057 4.867047 CGCAAGAACTGTGATGAATCTAGT 59.133 41.667 0.00 0.00 37.79 2.57
1730 2058 5.386810 CGCAAGAACTGTGATGAATCTAG 57.613 43.478 0.00 0.00 37.79 2.43
1754 2095 7.042950 CACTTTAATGGATCAATTGATTGGCA 58.957 34.615 21.57 4.77 38.30 4.92
1773 2118 6.480981 CGAACTGGTTTTCTACTTCCACTTTA 59.519 38.462 0.00 0.00 0.00 1.85
1774 2119 5.296035 CGAACTGGTTTTCTACTTCCACTTT 59.704 40.000 0.00 0.00 0.00 2.66
1775 2120 4.814771 CGAACTGGTTTTCTACTTCCACTT 59.185 41.667 0.00 0.00 0.00 3.16
1779 2124 3.186613 CAGCGAACTGGTTTTCTACTTCC 59.813 47.826 0.00 0.00 40.48 3.46
1780 2125 4.056050 TCAGCGAACTGGTTTTCTACTTC 58.944 43.478 0.00 0.00 44.59 3.01
1781 2126 4.067972 TCAGCGAACTGGTTTTCTACTT 57.932 40.909 0.00 0.00 44.59 2.24
1782 2127 3.746045 TCAGCGAACTGGTTTTCTACT 57.254 42.857 0.00 0.00 44.59 2.57
1783 2128 3.746492 ACATCAGCGAACTGGTTTTCTAC 59.254 43.478 0.00 0.00 44.59 2.59
1784 2129 3.745975 CACATCAGCGAACTGGTTTTCTA 59.254 43.478 0.00 0.00 44.59 2.10
1785 2130 2.549754 CACATCAGCGAACTGGTTTTCT 59.450 45.455 0.00 0.00 44.59 2.52
1786 2131 2.290641 ACACATCAGCGAACTGGTTTTC 59.709 45.455 0.00 0.00 44.59 2.29
1787 2132 2.033299 CACACATCAGCGAACTGGTTTT 59.967 45.455 0.00 0.00 44.59 2.43
1788 2133 1.603802 CACACATCAGCGAACTGGTTT 59.396 47.619 0.00 0.00 44.59 3.27
1789 2134 1.202639 TCACACATCAGCGAACTGGTT 60.203 47.619 0.00 0.00 44.59 3.67
1790 2135 0.392706 TCACACATCAGCGAACTGGT 59.607 50.000 0.00 0.00 44.59 4.00
1791 2136 1.395954 CATCACACATCAGCGAACTGG 59.604 52.381 0.00 0.00 44.59 4.00
1792 2137 1.395954 CCATCACACATCAGCGAACTG 59.604 52.381 0.00 0.00 45.95 3.16
1793 2138 1.676916 CCCATCACACATCAGCGAACT 60.677 52.381 0.00 0.00 0.00 3.01
1794 2139 0.729116 CCCATCACACATCAGCGAAC 59.271 55.000 0.00 0.00 0.00 3.95
1795 2140 0.392863 CCCCATCACACATCAGCGAA 60.393 55.000 0.00 0.00 0.00 4.70
1796 2141 1.221566 CCCCATCACACATCAGCGA 59.778 57.895 0.00 0.00 0.00 4.93
1797 2142 1.078214 ACCCCATCACACATCAGCG 60.078 57.895 0.00 0.00 0.00 5.18
1798 2143 0.254178 AGACCCCATCACACATCAGC 59.746 55.000 0.00 0.00 0.00 4.26
1799 2144 1.134280 GGAGACCCCATCACACATCAG 60.134 57.143 0.00 0.00 34.14 2.90
1800 2145 0.911769 GGAGACCCCATCACACATCA 59.088 55.000 0.00 0.00 34.14 3.07
1801 2146 0.911769 TGGAGACCCCATCACACATC 59.088 55.000 0.00 0.00 40.82 3.06
1802 2147 3.103236 TGGAGACCCCATCACACAT 57.897 52.632 0.00 0.00 40.82 3.21
1803 2148 4.658427 TGGAGACCCCATCACACA 57.342 55.556 0.00 0.00 40.82 3.72
1811 2156 3.813724 CCTGGCCATGGAGACCCC 61.814 72.222 18.40 7.22 0.00 4.95
1812 2157 2.308722 TTCCTGGCCATGGAGACCC 61.309 63.158 18.40 7.65 34.76 4.46
1813 2158 1.077429 GTTCCTGGCCATGGAGACC 60.077 63.158 18.40 8.07 34.76 3.85
1814 2159 0.329596 AAGTTCCTGGCCATGGAGAC 59.670 55.000 18.40 18.60 34.76 3.36
1815 2160 0.620556 GAAGTTCCTGGCCATGGAGA 59.379 55.000 18.40 2.73 34.76 3.71
1816 2161 0.329261 TGAAGTTCCTGGCCATGGAG 59.671 55.000 18.40 4.42 34.76 3.86
1817 2162 0.776810 TTGAAGTTCCTGGCCATGGA 59.223 50.000 18.40 17.12 0.00 3.41
1818 2163 0.890683 GTTGAAGTTCCTGGCCATGG 59.109 55.000 5.51 7.63 0.00 3.66
1819 2164 1.915141 AGTTGAAGTTCCTGGCCATG 58.085 50.000 5.51 2.84 0.00 3.66
1820 2165 2.615493 CGTAGTTGAAGTTCCTGGCCAT 60.615 50.000 5.51 0.00 0.00 4.40
1821 2166 1.270625 CGTAGTTGAAGTTCCTGGCCA 60.271 52.381 4.71 4.71 0.00 5.36
1824 2169 1.439679 GCCGTAGTTGAAGTTCCTGG 58.560 55.000 0.00 0.00 0.00 4.45
2084 2429 0.757188 ATCTCGTCGATGAAGCCCCT 60.757 55.000 8.98 0.00 0.00 4.79
2164 2509 3.379445 TCGAGGTTGAGGCCGGAC 61.379 66.667 5.05 0.00 0.00 4.79
2283 2628 9.869844 GCAAGAATATCTGAACATGTATACAAC 57.130 33.333 10.14 3.10 0.00 3.32
2284 2629 9.056005 GGCAAGAATATCTGAACATGTATACAA 57.944 33.333 10.14 0.00 0.00 2.41
2290 2635 4.333649 CGTGGCAAGAATATCTGAACATGT 59.666 41.667 0.00 0.00 0.00 3.21
2315 2660 1.378250 GAGCAGAGCAGGCAATGGT 60.378 57.895 0.00 0.00 44.02 3.55
2316 2661 2.119655 GGAGCAGAGCAGGCAATGG 61.120 63.158 0.00 0.00 0.00 3.16
2317 2662 2.119655 GGGAGCAGAGCAGGCAATG 61.120 63.158 0.00 0.00 0.00 2.82
2318 2663 2.274760 GGGAGCAGAGCAGGCAAT 59.725 61.111 0.00 0.00 0.00 3.56
2319 2664 4.039092 GGGGAGCAGAGCAGGCAA 62.039 66.667 0.00 0.00 0.00 4.52
2322 2667 3.847602 CTCGGGGAGCAGAGCAGG 61.848 72.222 0.00 0.00 0.00 4.85
2350 2696 5.639082 CACACACTGAAGTATGTATCAGCAA 59.361 40.000 0.00 0.00 45.50 3.91
2421 2780 1.429463 GTACACACACAGGCTACAGC 58.571 55.000 0.00 0.00 41.14 4.40
2534 2894 1.818642 AAGTTGAGCAGAGTCATGGC 58.181 50.000 0.00 0.00 0.00 4.40
2657 3017 4.323417 TGGATCACGTTTGCTAAAGATGT 58.677 39.130 0.49 0.00 0.00 3.06
2691 3052 2.025155 ACGGCTGTTCATAGATCGACT 58.975 47.619 0.00 0.00 0.00 4.18
2693 3054 2.165641 ACAACGGCTGTTCATAGATCGA 59.834 45.455 8.28 0.00 35.72 3.59
2735 3096 4.688879 CACAATGATTCTGCAGCAAAACAT 59.311 37.500 9.47 6.95 0.00 2.71
2824 3192 5.730550 ACAGAGCTTCGTTTTCCATACATA 58.269 37.500 0.00 0.00 0.00 2.29
2831 3199 2.132762 TCGAACAGAGCTTCGTTTTCC 58.867 47.619 5.51 0.00 42.97 3.13
2836 3204 2.724977 TGATTCGAACAGAGCTTCGT 57.275 45.000 0.00 0.00 42.97 3.85
2846 3215 7.382488 TGAGCAAAGCTACTATATGATTCGAAC 59.618 37.037 0.00 0.00 39.88 3.95
2847 3216 7.433680 TGAGCAAAGCTACTATATGATTCGAA 58.566 34.615 0.00 0.00 39.88 3.71
2848 3217 6.981722 TGAGCAAAGCTACTATATGATTCGA 58.018 36.000 0.00 0.00 39.88 3.71
2849 3218 7.673545 GCATGAGCAAAGCTACTATATGATTCG 60.674 40.741 0.00 0.00 39.88 3.34
2850 3219 7.462731 GCATGAGCAAAGCTACTATATGATTC 58.537 38.462 0.00 0.00 39.88 2.52
2851 3220 7.375106 GCATGAGCAAAGCTACTATATGATT 57.625 36.000 0.00 0.00 39.88 2.57
2852 3221 6.981762 GCATGAGCAAAGCTACTATATGAT 57.018 37.500 0.00 0.00 39.88 2.45
2869 3399 8.563123 ACAAAATCTCCATATCTATGCATGAG 57.437 34.615 10.16 5.52 32.40 2.90
2887 3417 6.938542 TGCCGTTCAACAATTAAACAAAATC 58.061 32.000 0.00 0.00 0.00 2.17
2897 3427 2.824936 TGATCCATGCCGTTCAACAATT 59.175 40.909 0.00 0.00 0.00 2.32
2898 3428 2.445427 TGATCCATGCCGTTCAACAAT 58.555 42.857 0.00 0.00 0.00 2.71
2903 3435 2.485302 CCAGTATGATCCATGCCGTTCA 60.485 50.000 0.00 0.00 39.69 3.18
2907 3439 0.250424 TGCCAGTATGATCCATGCCG 60.250 55.000 0.00 0.00 39.69 5.69
2920 3452 8.597167 TGATGCTCTACTAATATATTTGCCAGT 58.403 33.333 2.68 3.76 0.00 4.00
2933 3465 1.268589 GCGCTCGTGATGCTCTACTAA 60.269 52.381 0.00 0.00 0.00 2.24
2937 3479 1.064783 CTGCGCTCGTGATGCTCTA 59.935 57.895 9.73 0.00 0.00 2.43
2938 3480 2.202716 CTGCGCTCGTGATGCTCT 60.203 61.111 9.73 0.00 0.00 4.09
2967 3509 1.237285 CCAGTTGTAGCAGTGGCACC 61.237 60.000 15.27 0.00 44.61 5.01
2968 3510 2.247790 CCAGTTGTAGCAGTGGCAC 58.752 57.895 10.29 10.29 44.61 5.01
2969 3511 4.798433 CCAGTTGTAGCAGTGGCA 57.202 55.556 0.00 0.00 44.61 4.92
2986 3528 8.673711 ACTCTTCTATTATCTATCGAGACATGC 58.326 37.037 0.00 0.00 33.41 4.06
3043 3585 3.394940 AGATACAGAGATGTCGGTAGGGA 59.605 47.826 8.69 0.00 36.88 4.20
3073 3615 9.028185 GCAAGATTAGATGCCTTTTATTTTCTG 57.972 33.333 0.00 0.00 36.56 3.02
3194 3736 2.762535 ATTCGACGATTTGGGACAGT 57.237 45.000 0.00 0.00 42.39 3.55
3241 3784 4.624024 CGTAATGGCCTTATATGTGTACCG 59.376 45.833 3.32 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.