Multiple sequence alignment - TraesCS5D01G279100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G279100 chr5D 100.000 6050 0 0 1 6050 381037909 381031860 0.000000e+00 11173.0
1 TraesCS5D01G279100 chr5D 92.833 600 35 5 3116 3713 325370078 325369485 0.000000e+00 863.0
2 TraesCS5D01G279100 chr5D 88.095 294 17 8 2858 3133 325370383 325370090 3.490000e-87 333.0
3 TraesCS5D01G279100 chr5D 97.561 41 1 0 5136 5176 381032741 381032701 3.030000e-08 71.3
4 TraesCS5D01G279100 chr5D 97.561 41 1 0 5169 5209 381032774 381032734 3.030000e-08 71.3
5 TraesCS5D01G279100 chr5B 87.763 2378 168 66 3714 6050 457132900 457130605 0.000000e+00 2665.0
6 TraesCS5D01G279100 chr5B 92.751 1283 68 14 1166 2438 457134805 457133538 0.000000e+00 1831.0
7 TraesCS5D01G279100 chr5B 86.888 511 30 14 577 1068 457135579 457135087 6.900000e-149 538.0
8 TraesCS5D01G279100 chr5B 89.461 427 34 4 123 539 457136010 457135585 4.150000e-146 529.0
9 TraesCS5D01G279100 chr5B 85.784 408 29 15 2441 2820 457133298 457132892 7.300000e-109 405.0
10 TraesCS5D01G279100 chr5B 82.143 168 22 3 3730 3890 486487227 486487061 2.940000e-28 137.0
11 TraesCS5D01G279100 chr5B 82.759 87 15 0 1402 1488 535700235 535700321 1.810000e-10 78.7
12 TraesCS5D01G279100 chr5B 75.000 140 32 2 1353 1489 423366077 423365938 1.820000e-05 62.1
13 TraesCS5D01G279100 chr5A 95.371 1469 58 6 3714 5176 481902130 481900666 0.000000e+00 2327.0
14 TraesCS5D01G279100 chr5A 92.224 1479 63 25 1158 2586 481903851 481902375 0.000000e+00 2047.0
15 TraesCS5D01G279100 chr5A 92.178 473 23 4 704 1169 481904559 481904094 0.000000e+00 656.0
16 TraesCS5D01G279100 chr5A 84.164 562 50 24 5169 5723 481900706 481900177 5.410000e-140 508.0
17 TraesCS5D01G279100 chr5A 84.400 500 52 10 57 539 481905182 481904692 9.180000e-128 468.0
18 TraesCS5D01G279100 chr5A 90.123 243 14 5 2579 2820 481902355 481902122 2.120000e-79 307.0
19 TraesCS5D01G279100 chr5A 85.455 220 21 5 5836 6050 481899951 481899738 1.020000e-52 219.0
20 TraesCS5D01G279100 chr5A 83.981 206 14 6 2608 2794 487792201 487792406 4.820000e-41 180.0
21 TraesCS5D01G279100 chr5A 79.184 245 33 10 3714 3945 508870147 508870386 2.920000e-33 154.0
22 TraesCS5D01G279100 chr7A 88.755 916 66 17 2821 3713 511401747 511402648 0.000000e+00 1086.0
23 TraesCS5D01G279100 chr1A 88.541 925 61 21 2818 3713 58427907 58428815 0.000000e+00 1079.0
24 TraesCS5D01G279100 chr1A 86.742 264 30 4 3714 3975 517103112 517103372 7.670000e-74 289.0
25 TraesCS5D01G279100 chr1A 84.232 241 28 5 2815 3045 382742929 382743169 6.100000e-55 226.0
26 TraesCS5D01G279100 chr1A 82.659 173 23 6 2613 2784 1340582 1340748 4.890000e-31 147.0
27 TraesCS5D01G279100 chr1A 95.745 47 2 0 3844 3890 173242846 173242892 6.500000e-10 76.8
28 TraesCS5D01G279100 chr2A 88.152 920 66 20 2820 3715 713341099 713341999 0.000000e+00 1055.0
29 TraesCS5D01G279100 chr2A 88.004 917 71 19 2821 3713 290158240 290159141 0.000000e+00 1048.0
30 TraesCS5D01G279100 chr2A 87.397 849 63 23 2813 3634 463647658 463648489 0.000000e+00 935.0
31 TraesCS5D01G279100 chr2A 86.339 183 15 2 2610 2786 16861761 16861583 2.230000e-44 191.0
32 TraesCS5D01G279100 chr2A 80.102 196 18 7 2610 2785 778607028 778607222 6.370000e-25 126.0
33 TraesCS5D01G279100 chr2A 76.000 225 40 13 1272 1486 708059154 708059374 2.980000e-18 104.0
34 TraesCS5D01G279100 chr4A 93.468 444 25 3 3283 3722 474736486 474736043 0.000000e+00 656.0
35 TraesCS5D01G279100 chr4A 89.607 433 22 9 2820 3233 474736904 474736476 4.150000e-146 529.0
36 TraesCS5D01G279100 chr4A 87.658 316 36 2 3401 3713 223854934 223855249 1.240000e-96 364.0
37 TraesCS5D01G279100 chr4A 95.745 47 2 0 3844 3890 554405770 554405816 6.500000e-10 76.8
38 TraesCS5D01G279100 chr4D 86.129 620 57 10 3096 3712 455696815 455697408 5.110000e-180 641.0
39 TraesCS5D01G279100 chr6B 87.871 404 36 8 3321 3719 647474771 647474376 4.270000e-126 462.0
40 TraesCS5D01G279100 chr3A 80.116 518 64 23 3219 3713 631144349 631144850 3.470000e-92 350.0
41 TraesCS5D01G279100 chr3A 87.452 263 32 1 3714 3975 600924023 600923761 9.850000e-78 302.0
42 TraesCS5D01G279100 chr3A 79.747 237 22 7 2610 2820 600924251 600924015 1.360000e-31 148.0
43 TraesCS5D01G279100 chr3A 87.805 123 8 1 2705 2820 639501838 639501716 2.940000e-28 137.0
44 TraesCS5D01G279100 chr2D 84.791 263 38 2 3714 3974 634834605 634834343 4.650000e-66 263.0
45 TraesCS5D01G279100 chr2D 85.246 183 17 3 2610 2786 14768817 14768639 4.820000e-41 180.0
46 TraesCS5D01G279100 chr2D 82.178 202 18 6 2611 2794 634834841 634834640 2.260000e-34 158.0
47 TraesCS5D01G279100 chr2D 76.636 214 36 12 1283 1486 568801828 568802037 8.290000e-19 106.0
48 TraesCS5D01G279100 chr6A 84.681 235 26 5 2821 3045 41232112 41232346 6.100000e-55 226.0
49 TraesCS5D01G279100 chr3B 87.755 196 12 5 2607 2794 149469503 149469694 1.020000e-52 219.0
50 TraesCS5D01G279100 chr3B 87.234 141 17 1 3836 3975 204288950 204288810 6.280000e-35 159.0
51 TraesCS5D01G279100 chr1B 77.236 246 45 9 1250 1488 344002081 344002322 3.800000e-27 134.0
52 TraesCS5D01G279100 chr1D 78.404 213 35 10 1283 1488 270231144 270231352 1.770000e-25 128.0
53 TraesCS5D01G279100 chr2B 75.785 223 44 8 1272 1486 681409288 681409508 2.980000e-18 104.0
54 TraesCS5D01G279100 chr2B 78.417 139 26 4 1352 1488 794866992 794866856 3.000000e-13 87.9
55 TraesCS5D01G279100 chr3D 95.745 47 2 0 3844 3890 428685375 428685329 6.500000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G279100 chr5D 381031860 381037909 6049 True 11173.000000 11173 100.000000 1 6050 1 chr5D.!!$R1 6049
1 TraesCS5D01G279100 chr5D 325369485 325370383 898 True 598.000000 863 90.464000 2858 3713 2 chr5D.!!$R2 855
2 TraesCS5D01G279100 chr5B 457130605 457136010 5405 True 1193.600000 2665 88.529400 123 6050 5 chr5B.!!$R3 5927
3 TraesCS5D01G279100 chr5A 481899738 481905182 5444 True 933.142857 2327 89.130714 57 6050 7 chr5A.!!$R1 5993
4 TraesCS5D01G279100 chr7A 511401747 511402648 901 False 1086.000000 1086 88.755000 2821 3713 1 chr7A.!!$F1 892
5 TraesCS5D01G279100 chr1A 58427907 58428815 908 False 1079.000000 1079 88.541000 2818 3713 1 chr1A.!!$F2 895
6 TraesCS5D01G279100 chr2A 713341099 713341999 900 False 1055.000000 1055 88.152000 2820 3715 1 chr2A.!!$F4 895
7 TraesCS5D01G279100 chr2A 290158240 290159141 901 False 1048.000000 1048 88.004000 2821 3713 1 chr2A.!!$F1 892
8 TraesCS5D01G279100 chr2A 463647658 463648489 831 False 935.000000 935 87.397000 2813 3634 1 chr2A.!!$F2 821
9 TraesCS5D01G279100 chr4A 474736043 474736904 861 True 592.500000 656 91.537500 2820 3722 2 chr4A.!!$R1 902
10 TraesCS5D01G279100 chr4D 455696815 455697408 593 False 641.000000 641 86.129000 3096 3712 1 chr4D.!!$F1 616
11 TraesCS5D01G279100 chr3A 631144349 631144850 501 False 350.000000 350 80.116000 3219 3713 1 chr3A.!!$F1 494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
960 1099 0.112412 AAGTCCACCACCAACCCATC 59.888 55.000 0.00 0.0 0.00 3.51 F
1990 2430 0.179067 CGTGGTATGGTAATGGCGGT 60.179 55.000 0.00 0.0 0.00 5.68 F
2067 2507 1.097547 GGATGATCAACGGGCCACTG 61.098 60.000 4.39 0.0 0.00 3.66 F
3297 4068 1.405821 GCTTAGCTAGCTTCGTCCAGA 59.594 52.381 24.88 0.0 46.77 3.86 F
3957 4759 0.392461 TTCCGCTCCGCTTATGCTTT 60.392 50.000 0.00 0.0 36.97 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2094 2534 0.112995 TGAAGCTGCAGTTGGGGAAT 59.887 50.000 16.64 0.0 0.00 3.01 R
3373 4146 1.009900 CGCCGAGACGTAGATGGTC 60.010 63.158 0.00 0.0 34.62 4.02 R
3452 4226 1.610624 CCTTGACGGTGTTGTAGCCAT 60.611 52.381 0.00 0.0 0.00 4.40 R
4212 5014 0.036952 AACCCTGACACAGATCGCAG 60.037 55.000 0.00 0.0 32.44 5.18 R
5709 6536 0.613260 ACCGTCCATGCTTCAGCTAA 59.387 50.000 0.00 0.0 42.66 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 2.266554 GAGCACTTGACCTCTCAATCG 58.733 52.381 0.00 0.00 35.78 3.34
76 77 0.723981 GCACTTGACCTCTCAATCGC 59.276 55.000 0.00 0.00 35.78 4.58
86 87 3.181471 ACCTCTCAATCGCCTACATCAAG 60.181 47.826 0.00 0.00 0.00 3.02
89 90 4.433615 TCTCAATCGCCTACATCAAGAAC 58.566 43.478 0.00 0.00 0.00 3.01
90 91 4.081697 TCTCAATCGCCTACATCAAGAACA 60.082 41.667 0.00 0.00 0.00 3.18
91 92 3.932710 TCAATCGCCTACATCAAGAACAC 59.067 43.478 0.00 0.00 0.00 3.32
92 93 3.895232 ATCGCCTACATCAAGAACACT 57.105 42.857 0.00 0.00 0.00 3.55
93 94 2.959516 TCGCCTACATCAAGAACACTG 58.040 47.619 0.00 0.00 0.00 3.66
94 95 2.299013 TCGCCTACATCAAGAACACTGT 59.701 45.455 0.00 0.00 0.00 3.55
95 96 2.668457 CGCCTACATCAAGAACACTGTC 59.332 50.000 0.00 0.00 0.00 3.51
112 113 0.462047 GTCATCATCCCCACGGTCAC 60.462 60.000 0.00 0.00 0.00 3.67
120 121 2.646175 CCCACGGTCACTCGGTCAT 61.646 63.158 0.00 0.00 0.00 3.06
121 122 1.292223 CCACGGTCACTCGGTCATT 59.708 57.895 0.00 0.00 0.00 2.57
127 128 4.865925 CACGGTCACTCGGTCATTAATTTA 59.134 41.667 0.00 0.00 0.00 1.40
136 137 7.846107 CACTCGGTCATTAATTTATTCTTCACG 59.154 37.037 0.00 0.00 0.00 4.35
141 142 4.886247 TTAATTTATTCTTCACGCCCCG 57.114 40.909 0.00 0.00 0.00 5.73
145 146 1.729284 TATTCTTCACGCCCCGAAAC 58.271 50.000 0.00 0.00 0.00 2.78
147 148 0.179040 TTCTTCACGCCCCGAAACTT 60.179 50.000 0.00 0.00 0.00 2.66
153 154 0.748729 ACGCCCCGAAACTTTGTTGA 60.749 50.000 0.00 0.00 0.00 3.18
178 179 4.659111 TGCATTGAAACATCCATCCATC 57.341 40.909 0.00 0.00 0.00 3.51
190 191 8.403292 AACATCCATCCATCTATATGAATCCT 57.597 34.615 0.00 0.00 34.84 3.24
207 208 1.503784 TCCTCCCGGGATATTCAGAGT 59.496 52.381 27.07 0.00 39.58 3.24
208 209 1.896465 CCTCCCGGGATATTCAGAGTC 59.104 57.143 27.07 0.00 37.23 3.36
250 251 2.104281 AGCATACCTACCAATTCGGGAC 59.896 50.000 0.00 0.00 40.22 4.46
368 386 1.679032 CCTTTCTAGGACCGGCCAAAG 60.679 57.143 15.92 14.88 45.05 2.77
415 434 4.892934 AGCTTCACATCCCAAACACTTTAA 59.107 37.500 0.00 0.00 0.00 1.52
443 463 4.406648 AATGATTGTACTCATCTCGGCA 57.593 40.909 0.00 0.00 34.79 5.69
449 469 0.312102 TACTCATCTCGGCATGCTCG 59.688 55.000 18.92 18.81 0.00 5.03
488 513 3.257873 CACCCTATGCAACATGGTCAAAA 59.742 43.478 0.00 0.00 0.00 2.44
489 514 4.081531 CACCCTATGCAACATGGTCAAAAT 60.082 41.667 0.00 0.00 0.00 1.82
490 515 5.126869 CACCCTATGCAACATGGTCAAAATA 59.873 40.000 0.00 0.00 0.00 1.40
491 516 5.360714 ACCCTATGCAACATGGTCAAAATAG 59.639 40.000 0.00 0.00 0.00 1.73
492 517 5.360714 CCCTATGCAACATGGTCAAAATAGT 59.639 40.000 0.00 0.00 0.00 2.12
493 518 6.460123 CCCTATGCAACATGGTCAAAATAGTC 60.460 42.308 0.00 0.00 0.00 2.59
503 529 4.688879 TGGTCAAAATAGTCACGTTGCTAG 59.311 41.667 0.00 0.00 0.00 3.42
506 532 6.073440 GGTCAAAATAGTCACGTTGCTAGAAA 60.073 38.462 0.00 0.00 0.00 2.52
511 537 6.707599 ATAGTCACGTTGCTAGAAAAGAAC 57.292 37.500 3.09 1.68 0.00 3.01
543 569 4.269183 TCAAATGTTGACACTGTTCCAGT 58.731 39.130 0.00 0.00 38.95 4.00
545 571 4.900635 AATGTTGACACTGTTCCAGTTC 57.099 40.909 0.00 0.00 42.59 3.01
546 572 3.342377 TGTTGACACTGTTCCAGTTCA 57.658 42.857 0.00 0.70 42.59 3.18
547 573 3.680490 TGTTGACACTGTTCCAGTTCAA 58.320 40.909 13.20 13.20 42.59 2.69
548 574 4.075682 TGTTGACACTGTTCCAGTTCAAA 58.924 39.130 16.29 9.37 42.59 2.69
549 575 4.520874 TGTTGACACTGTTCCAGTTCAAAA 59.479 37.500 16.29 11.98 42.59 2.44
550 576 5.010112 TGTTGACACTGTTCCAGTTCAAAAA 59.990 36.000 16.29 9.95 42.59 1.94
591 617 8.635765 AAAATGTTTAGAGCTAGGATTGTTGA 57.364 30.769 0.00 0.00 0.00 3.18
655 681 3.253432 GCTTTTTCTTCCTCGTTCATGGT 59.747 43.478 0.00 0.00 0.00 3.55
658 692 0.902531 TCTTCCTCGTTCATGGTCCC 59.097 55.000 0.00 0.00 0.00 4.46
684 718 2.267961 GTCCCCGCCAATCGTTCT 59.732 61.111 0.00 0.00 36.19 3.01
687 721 2.267642 CCCGCCAATCGTTCTCCA 59.732 61.111 0.00 0.00 36.19 3.86
693 727 3.574614 CGCCAATCGTTCTCCAAAAATT 58.425 40.909 0.00 0.00 0.00 1.82
694 728 3.364621 CGCCAATCGTTCTCCAAAAATTG 59.635 43.478 0.00 0.00 0.00 2.32
696 730 4.305769 CCAATCGTTCTCCAAAAATTGCA 58.694 39.130 0.00 0.00 0.00 4.08
701 735 4.082787 TCGTTCTCCAAAAATTGCATCTCC 60.083 41.667 0.00 0.00 0.00 3.71
729 850 8.924691 CATTCACATGTAATTTTCGGTGAAATT 58.075 29.630 14.94 9.06 45.08 1.82
737 858 4.599047 TTTTCGGTGAAATTGCCTCATT 57.401 36.364 0.00 0.00 31.34 2.57
751 872 1.070821 CTCATTCGTGCGTGATGTGT 58.929 50.000 9.19 0.00 0.00 3.72
763 884 1.188871 TGATGTGTCACTGGCCGGTA 61.189 55.000 19.20 0.63 0.00 4.02
935 1063 2.837291 CTCTCTCTCCCCAGGGCG 60.837 72.222 0.00 0.00 34.68 6.13
936 1064 3.347590 TCTCTCTCCCCAGGGCGA 61.348 66.667 0.00 0.00 34.68 5.54
958 1097 1.534697 GAAGTCCACCACCAACCCA 59.465 57.895 0.00 0.00 0.00 4.51
960 1099 0.112412 AAGTCCACCACCAACCCATC 59.888 55.000 0.00 0.00 0.00 3.51
961 1100 1.304134 GTCCACCACCAACCCATCC 60.304 63.158 0.00 0.00 0.00 3.51
962 1101 2.037208 CCACCACCAACCCATCCC 59.963 66.667 0.00 0.00 0.00 3.85
963 1102 2.037208 CACCACCAACCCATCCCC 59.963 66.667 0.00 0.00 0.00 4.81
964 1103 3.272847 ACCACCAACCCATCCCCC 61.273 66.667 0.00 0.00 0.00 5.40
1169 1311 2.762875 CTCCCACCTCCCCGGTAC 60.763 72.222 0.00 0.00 46.94 3.34
1254 1661 3.450817 TCGATTTTATGGTGGAGCAGAGA 59.549 43.478 0.00 0.00 0.00 3.10
1643 2050 2.864248 GACGACGACGACGACTGC 60.864 66.667 25.15 8.43 42.66 4.40
1689 2099 0.938713 CGCCGTCAGTCTACCTAGAG 59.061 60.000 0.00 0.00 32.01 2.43
1691 2101 1.310904 CCGTCAGTCTACCTAGAGCC 58.689 60.000 0.00 0.00 32.01 4.70
1837 2277 4.401519 CCTGTTGCAAAATGGAGATGATCT 59.598 41.667 0.00 0.00 0.00 2.75
1907 2347 2.831742 CCGCTTCAGCATGGCCAT 60.832 61.111 14.09 14.09 42.21 4.40
1925 2365 4.785453 CCTCAAGGTCGGCCCAGC 62.785 72.222 0.08 0.00 34.66 4.85
1931 2371 4.241555 GGTCGGCCCAGCGATGAT 62.242 66.667 0.06 0.00 0.00 2.45
1990 2430 0.179067 CGTGGTATGGTAATGGCGGT 60.179 55.000 0.00 0.00 0.00 5.68
2067 2507 1.097547 GGATGATCAACGGGCCACTG 61.098 60.000 4.39 0.00 0.00 3.66
2076 2516 2.452813 CGGGCCACTGAATCGTTCG 61.453 63.158 4.39 0.00 0.00 3.95
2094 2534 6.156519 TCGTTCGAAGAATTCTCAGAATTCA 58.843 36.000 32.48 15.79 44.75 2.57
2174 2614 2.672961 TGGAGGAGATTAGTGTTGCG 57.327 50.000 0.00 0.00 0.00 4.85
2181 2621 5.300752 AGGAGATTAGTGTTGCGGATTATG 58.699 41.667 0.00 0.00 0.00 1.90
2365 2805 9.088512 GGTGTGTTTTGTTCTCTATAGTCTATG 57.911 37.037 2.37 0.00 0.00 2.23
2435 2880 3.979948 TGCGTACTTGTGTAACTGCTAA 58.020 40.909 0.00 0.00 38.04 3.09
2438 2883 5.467399 TGCGTACTTGTGTAACTGCTAATTT 59.533 36.000 0.00 0.00 38.04 1.82
2462 3144 6.623486 TGTCTTCTGCATTTGTCATAATTGG 58.377 36.000 0.00 0.00 0.00 3.16
2464 3146 7.092716 GTCTTCTGCATTTGTCATAATTGGTT 58.907 34.615 0.00 0.00 0.00 3.67
2465 3147 7.062605 GTCTTCTGCATTTGTCATAATTGGTTG 59.937 37.037 0.00 0.00 0.00 3.77
2491 3173 1.699083 TCTGCCTTCATCCTCACACAA 59.301 47.619 0.00 0.00 0.00 3.33
2504 3186 7.284261 TCATCCTCACACAATTACAAAACTTGA 59.716 33.333 0.00 0.00 0.00 3.02
2506 3188 7.479980 TCCTCACACAATTACAAAACTTGAAG 58.520 34.615 0.00 0.00 0.00 3.02
2510 3195 7.753132 TCACACAATTACAAAACTTGAAGACAC 59.247 33.333 0.00 0.00 0.00 3.67
2518 3204 7.816945 ACAAAACTTGAAGACACAAAATGAG 57.183 32.000 0.00 0.00 0.00 2.90
2574 3260 7.510685 TGCTATATCCCTAAAAGACATCAGAGT 59.489 37.037 0.00 0.00 0.00 3.24
2634 3347 5.515270 AGTGTTCAAGAAAGCGTTTTTAAGC 59.485 36.000 0.00 0.00 0.00 3.09
2789 3502 3.508845 ATTATTGGGATCTGTTCGGGG 57.491 47.619 0.00 0.00 0.00 5.73
2893 3606 6.153170 ACACCGAAAAACTTTTTCTTCCCTAA 59.847 34.615 19.91 0.00 0.00 2.69
2904 3617 4.884668 TTCTTCCCTAACTGACATCGTT 57.115 40.909 0.00 0.00 0.00 3.85
2995 3709 2.557924 TGCCCTCAATGTGATTTGTGAC 59.442 45.455 0.00 0.00 0.00 3.67
3005 3719 9.462174 TCAATGTGATTTGTGACTAAAATTGTC 57.538 29.630 0.00 0.00 35.21 3.18
3030 3744 5.804639 TGTGGTAGTTTAGCTTCATCATGT 58.195 37.500 0.00 0.00 0.00 3.21
3031 3745 5.874810 TGTGGTAGTTTAGCTTCATCATGTC 59.125 40.000 0.00 0.00 0.00 3.06
3105 3838 6.141462 GCCTGTACACAATCGATAGTAGTAC 58.859 44.000 16.82 16.82 37.40 2.73
3112 3845 7.544622 ACACAATCGATAGTAGTACACAACAT 58.455 34.615 0.00 0.00 37.40 2.71
3235 4003 6.584942 CGTGATAATATCGCTAGCTTGGTTAA 59.415 38.462 13.93 0.00 37.64 2.01
3274 4045 3.724508 ATCAATCAAGCGAGAGATCGT 57.275 42.857 0.00 0.00 35.26 3.73
3297 4068 1.405821 GCTTAGCTAGCTTCGTCCAGA 59.594 52.381 24.88 0.00 46.77 3.86
3452 4226 1.225376 CTTGTACGCCGGAAAGCACA 61.225 55.000 5.05 0.00 0.00 4.57
3505 4299 2.356673 AAAACGAGTCGGCCGGAC 60.357 61.111 27.83 21.30 46.45 4.79
3638 4434 8.732746 AGCATAAAATTTAGACTCGGTGTTAT 57.267 30.769 0.00 0.00 0.00 1.89
3716 4513 9.620259 GGTGTTAAATAAGGAATTCTCTCATCT 57.380 33.333 5.23 0.00 0.00 2.90
3733 4530 7.828717 TCTCTCATCTCTATTAGGCTATGTCTG 59.171 40.741 0.00 0.00 0.00 3.51
3744 4541 4.573900 AGGCTATGTCTGTTTGAACTGAG 58.426 43.478 4.03 0.00 37.51 3.35
3766 4563 9.624697 CTGAGCTGCATTTTAGTTGTTATTTTA 57.375 29.630 1.02 0.00 0.00 1.52
3787 4584 3.403038 ACTTGCTGTGTGAACCTGATAC 58.597 45.455 0.00 0.00 0.00 2.24
3788 4585 3.181455 ACTTGCTGTGTGAACCTGATACA 60.181 43.478 0.00 0.00 0.00 2.29
3809 4606 9.489084 GATACATATTTGCTATGGTGTGAACTA 57.511 33.333 0.00 0.00 41.41 2.24
3863 4660 7.232534 TGTGCTATGTTTCCTATTTTCCTTTGT 59.767 33.333 0.00 0.00 0.00 2.83
3936 4737 1.386533 CCATTGCTCTAAGCTGTGGG 58.613 55.000 12.43 0.00 42.97 4.61
3957 4759 0.392461 TTCCGCTCCGCTTATGCTTT 60.392 50.000 0.00 0.00 36.97 3.51
3966 4768 2.342354 CCGCTTATGCTTTCGCTTTTTG 59.658 45.455 0.00 0.00 36.97 2.44
4127 4929 3.004210 ACAGAGATCTTGATCCACGATCG 59.996 47.826 14.88 14.88 41.81 3.69
4157 4959 6.403636 CCAGTAATCAAATTACACAGTCTGCC 60.404 42.308 11.30 0.00 45.80 4.85
4212 5014 1.746760 CACTGAAGAAACAAGTGCGC 58.253 50.000 0.00 0.00 0.00 6.09
4259 5061 0.463204 ATGACGGTCAGGATGCTGAG 59.537 55.000 18.21 9.50 34.76 3.35
4331 5136 6.467677 ACAGAGTATGAATTGTACTGCAACT 58.532 36.000 5.15 0.00 40.28 3.16
4340 5145 3.744238 TGTACTGCAACTGAGCACTTA 57.256 42.857 0.00 0.00 40.11 2.24
4358 5163 5.625197 GCACTTAATTTCTGCATCCAATGGT 60.625 40.000 0.00 0.00 0.00 3.55
4520 5325 2.110213 TGGACGCACAACCAGGTC 59.890 61.111 0.00 0.00 0.00 3.85
4614 5419 7.022979 ACTTCATTTTGTTTTGCAAGCTTTTC 58.977 30.769 0.00 0.00 38.47 2.29
4618 5423 4.576106 TTGTTTTGCAAGCTTTTCGTTC 57.424 36.364 0.00 0.00 32.52 3.95
4622 5427 5.121454 TGTTTTGCAAGCTTTTCGTTCAATT 59.879 32.000 0.00 0.00 0.00 2.32
4629 5434 4.466828 AGCTTTTCGTTCAATTGATCACG 58.533 39.130 21.29 21.29 31.61 4.35
4640 5445 8.335356 CGTTCAATTGATCACGTATAAATTCCT 58.665 33.333 19.75 0.00 27.42 3.36
4645 5450 7.786178 TTGATCACGTATAAATTCCTTCAGG 57.214 36.000 0.00 0.00 0.00 3.86
4646 5451 6.884832 TGATCACGTATAAATTCCTTCAGGT 58.115 36.000 0.00 0.00 36.34 4.00
4647 5452 6.761242 TGATCACGTATAAATTCCTTCAGGTG 59.239 38.462 0.00 0.00 36.34 4.00
4677 5486 8.123639 ACTTAGTCAAATGTCTGAACTAGCTA 57.876 34.615 0.00 0.00 0.00 3.32
4713 5522 0.725784 GCACTGCGAATTTCCACACG 60.726 55.000 0.00 0.00 0.00 4.49
4752 5561 1.227089 CCTGAGTCCAGCGGATTCG 60.227 63.158 12.76 0.00 40.66 3.34
4776 5585 3.504906 AGTCATGGTTCAATTCAGCTGTG 59.495 43.478 14.67 4.92 0.00 3.66
4975 5784 0.033781 GGTTTTGCTTGCTGCCATCA 59.966 50.000 0.00 0.00 42.00 3.07
5039 5848 2.684038 GCAAGGGGTTATGGAAGTCCTC 60.684 54.545 0.00 0.00 36.82 3.71
5040 5849 1.894699 AGGGGTTATGGAAGTCCTCC 58.105 55.000 0.00 0.00 45.64 4.30
5041 5850 1.369983 AGGGGTTATGGAAGTCCTCCT 59.630 52.381 0.00 0.00 45.64 3.69
5087 5896 0.822164 TTGCTCGACTTACCCTAGCC 59.178 55.000 0.00 0.00 32.14 3.93
5089 5898 1.382692 GCTCGACTTACCCTAGCCGT 61.383 60.000 0.00 0.00 0.00 5.68
5113 5931 3.421394 TCCTCATCATTACCCCTCAGT 57.579 47.619 0.00 0.00 0.00 3.41
5116 5934 3.209410 CTCATCATTACCCCTCAGTTGC 58.791 50.000 0.00 0.00 0.00 4.17
5121 5939 3.844211 TCATTACCCCTCAGTTGCTAGTT 59.156 43.478 0.00 0.00 0.00 2.24
5189 6007 3.755810 TCCCATTGGAAAAAGGCGA 57.244 47.368 3.62 0.00 37.86 5.54
5190 6008 2.002505 TCCCATTGGAAAAAGGCGAA 57.997 45.000 3.62 0.00 37.86 4.70
5191 6009 1.892474 TCCCATTGGAAAAAGGCGAAG 59.108 47.619 3.62 0.00 37.86 3.79
5192 6010 1.892474 CCCATTGGAAAAAGGCGAAGA 59.108 47.619 3.62 0.00 0.00 2.87
5193 6011 2.094545 CCCATTGGAAAAAGGCGAAGAG 60.095 50.000 3.62 0.00 0.00 2.85
5194 6012 2.094545 CCATTGGAAAAAGGCGAAGAGG 60.095 50.000 0.00 0.00 0.00 3.69
5195 6013 2.358322 TTGGAAAAAGGCGAAGAGGT 57.642 45.000 0.00 0.00 0.00 3.85
5196 6014 3.495434 TTGGAAAAAGGCGAAGAGGTA 57.505 42.857 0.00 0.00 0.00 3.08
5197 6015 3.053831 TGGAAAAAGGCGAAGAGGTAG 57.946 47.619 0.00 0.00 0.00 3.18
5198 6016 2.635915 TGGAAAAAGGCGAAGAGGTAGA 59.364 45.455 0.00 0.00 0.00 2.59
5199 6017 3.071892 TGGAAAAAGGCGAAGAGGTAGAA 59.928 43.478 0.00 0.00 0.00 2.10
5200 6018 3.685272 GGAAAAAGGCGAAGAGGTAGAAG 59.315 47.826 0.00 0.00 0.00 2.85
5201 6019 2.388310 AAAGGCGAAGAGGTAGAAGC 57.612 50.000 0.00 0.00 0.00 3.86
5202 6020 1.267121 AAGGCGAAGAGGTAGAAGCA 58.733 50.000 0.00 0.00 0.00 3.91
5203 6021 1.490574 AGGCGAAGAGGTAGAAGCAT 58.509 50.000 0.00 0.00 0.00 3.79
5204 6022 1.834263 AGGCGAAGAGGTAGAAGCATT 59.166 47.619 0.00 0.00 0.00 3.56
5205 6023 2.237392 AGGCGAAGAGGTAGAAGCATTT 59.763 45.455 0.00 0.00 0.00 2.32
5206 6024 2.609916 GGCGAAGAGGTAGAAGCATTTC 59.390 50.000 0.00 0.00 0.00 2.17
5207 6025 2.609916 GCGAAGAGGTAGAAGCATTTCC 59.390 50.000 0.00 0.00 33.64 3.13
5208 6026 3.861840 CGAAGAGGTAGAAGCATTTCCA 58.138 45.455 0.00 0.00 33.64 3.53
5234 6052 8.514330 AAGTGTGATTTGAGGTGTTAGTTTTA 57.486 30.769 0.00 0.00 0.00 1.52
5252 6070 0.914644 TAAGCTCATGCAGGAGGCTT 59.085 50.000 28.00 28.01 45.15 4.35
5261 6079 1.536073 GCAGGAGGCTTGGAAAACCC 61.536 60.000 0.00 0.00 40.25 4.11
5262 6080 0.178964 CAGGAGGCTTGGAAAACCCA 60.179 55.000 0.00 0.00 44.93 4.51
5335 6156 3.898123 CTCCTACTTAGCTATTGCCCTCA 59.102 47.826 0.00 0.00 40.80 3.86
5353 6174 2.235650 CTCATGTGGGTGTGAGACATCT 59.764 50.000 0.00 0.00 43.50 2.90
5392 6213 1.519455 CACGAAGAGGGATGCGACC 60.519 63.158 0.00 0.00 0.00 4.79
5409 6230 5.466819 TGCGACCTATGTGCATAGTATTAC 58.533 41.667 15.52 4.76 39.23 1.89
5467 6289 4.260985 TGATAATGTGTGCCTGGTTAGTG 58.739 43.478 0.00 0.00 0.00 2.74
5468 6290 1.247567 AATGTGTGCCTGGTTAGTGC 58.752 50.000 0.00 0.00 0.00 4.40
5471 6293 1.418264 TGTGTGCCTGGTTAGTGCTTA 59.582 47.619 0.00 0.00 0.00 3.09
5472 6294 1.804748 GTGTGCCTGGTTAGTGCTTAC 59.195 52.381 0.00 0.00 0.00 2.34
5473 6295 1.697432 TGTGCCTGGTTAGTGCTTACT 59.303 47.619 0.00 0.00 0.00 2.24
5474 6296 2.105821 TGTGCCTGGTTAGTGCTTACTT 59.894 45.455 0.00 0.00 0.00 2.24
5475 6297 2.742589 GTGCCTGGTTAGTGCTTACTTC 59.257 50.000 0.00 0.00 0.00 3.01
5476 6298 2.637872 TGCCTGGTTAGTGCTTACTTCT 59.362 45.455 0.00 0.00 0.00 2.85
5479 6303 4.154375 GCCTGGTTAGTGCTTACTTCTTTC 59.846 45.833 0.00 0.00 0.00 2.62
5486 6310 3.391296 AGTGCTTACTTCTTTCTGTCCCA 59.609 43.478 0.00 0.00 0.00 4.37
5507 6331 4.240096 CACTGTTTGATGAAAAGGATGGC 58.760 43.478 0.00 0.00 0.00 4.40
5511 6335 0.032217 TGATGAAAAGGATGGCCCCC 60.032 55.000 0.00 0.66 34.66 5.40
5549 6373 6.922957 TCTCATTTTGCCAACTGTAACATTTC 59.077 34.615 0.00 0.00 0.00 2.17
5552 6376 7.714377 TCATTTTGCCAACTGTAACATTTCATT 59.286 29.630 0.00 0.00 0.00 2.57
5574 6399 8.243426 TCATTGTTAGACCTGTAATTCATTTGC 58.757 33.333 0.00 0.00 0.00 3.68
5575 6400 7.759489 TTGTTAGACCTGTAATTCATTTGCT 57.241 32.000 0.00 0.00 0.00 3.91
5576 6401 7.377766 TGTTAGACCTGTAATTCATTTGCTC 57.622 36.000 0.00 0.00 0.00 4.26
5606 6431 2.972625 TCTGTGAAATTAGACAGGCCG 58.027 47.619 13.96 0.00 40.11 6.13
5646 6471 3.431415 TGACTATGAGGACCCATATCCG 58.569 50.000 3.89 0.00 44.22 4.18
5647 6472 3.075432 TGACTATGAGGACCCATATCCGA 59.925 47.826 3.89 0.00 44.22 4.55
5650 6475 1.938585 TGAGGACCCATATCCGATCC 58.061 55.000 0.00 0.00 44.22 3.36
5657 6482 6.453476 AGGACCCATATCCGATCCTTTATAT 58.547 40.000 0.00 0.00 44.22 0.86
5658 6483 6.909158 AGGACCCATATCCGATCCTTTATATT 59.091 38.462 0.00 0.00 44.22 1.28
5723 6550 8.192774 TCTTATGAAAATTTAGCTGAAGCATGG 58.807 33.333 4.90 0.00 45.16 3.66
5725 6552 5.713025 TGAAAATTTAGCTGAAGCATGGAC 58.287 37.500 4.90 0.00 45.16 4.02
5727 6554 1.737838 TTTAGCTGAAGCATGGACGG 58.262 50.000 4.90 0.00 45.16 4.79
5733 6588 4.366320 GCTGAAGCATGGACGGTAAACG 62.366 54.545 0.00 0.00 44.61 3.60
5758 6613 6.566197 ATTAGCTGCCACAAAATATAGAGC 57.434 37.500 0.00 0.00 0.00 4.09
5762 6617 5.420104 AGCTGCCACAAAATATAGAGCTTTT 59.580 36.000 0.00 0.00 31.53 2.27
5763 6618 5.745769 GCTGCCACAAAATATAGAGCTTTTC 59.254 40.000 0.00 0.00 0.00 2.29
5766 6621 7.538575 TGCCACAAAATATAGAGCTTTTCTTC 58.461 34.615 0.00 0.00 37.36 2.87
5781 6636 7.330262 AGCTTTTCTTCTCATGAAAACCAAAA 58.670 30.769 0.00 0.00 38.15 2.44
5783 6638 7.538303 TTTTCTTCTCATGAAAACCAAAAGC 57.462 32.000 0.00 0.00 38.15 3.51
5795 6650 5.343307 AAACCAAAAGCAGACAGACAAAT 57.657 34.783 0.00 0.00 0.00 2.32
5801 6656 7.986889 ACCAAAAGCAGACAGACAAATTTTATT 59.013 29.630 0.00 0.00 0.00 1.40
5802 6657 8.829612 CCAAAAGCAGACAGACAAATTTTATTT 58.170 29.630 0.00 0.00 0.00 1.40
5823 6678 3.266510 TGAAGAGAAACACACACAGCT 57.733 42.857 0.00 0.00 0.00 4.24
5824 6679 3.198068 TGAAGAGAAACACACACAGCTC 58.802 45.455 0.00 0.00 0.00 4.09
5826 6681 3.266510 AGAGAAACACACACAGCTCAA 57.733 42.857 0.00 0.00 0.00 3.02
5827 6682 2.939103 AGAGAAACACACACAGCTCAAC 59.061 45.455 0.00 0.00 0.00 3.18
5917 6859 1.082104 CGCTTTGGACCGCTGAAAC 60.082 57.895 0.00 0.00 0.00 2.78
5938 6880 1.864565 AACAAACAAAATGGCGAGCC 58.135 45.000 7.26 7.26 0.00 4.70
5943 6887 1.745115 CAAAATGGCGAGCCGAGGA 60.745 57.895 9.78 0.00 39.42 3.71
5990 6940 0.474614 GGCCTATCCCCTTTCACTCC 59.525 60.000 0.00 0.00 0.00 3.85
5991 6941 1.512735 GCCTATCCCCTTTCACTCCT 58.487 55.000 0.00 0.00 0.00 3.69
6003 6953 3.459232 TTCACTCCTTCAGTCAGTGTG 57.541 47.619 0.00 0.00 38.94 3.82
6004 6954 1.688735 TCACTCCTTCAGTCAGTGTGG 59.311 52.381 0.00 0.00 38.94 4.17
6005 6955 1.414181 CACTCCTTCAGTCAGTGTGGT 59.586 52.381 0.00 0.00 34.08 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.673711 GGTCAAGTGCTCATTATTAATGTGTTA 58.326 33.333 14.48 5.35 39.87 2.41
41 42 7.394359 AGGTCAAGTGCTCATTATTAATGTGTT 59.606 33.333 14.48 2.84 39.87 3.32
42 43 6.886459 AGGTCAAGTGCTCATTATTAATGTGT 59.114 34.615 14.48 0.00 39.87 3.72
43 44 7.281774 AGAGGTCAAGTGCTCATTATTAATGTG 59.718 37.037 14.48 13.25 39.87 3.21
44 45 7.341805 AGAGGTCAAGTGCTCATTATTAATGT 58.658 34.615 14.48 0.00 39.87 2.71
45 46 7.496920 TGAGAGGTCAAGTGCTCATTATTAATG 59.503 37.037 9.70 9.70 40.28 1.90
46 47 7.568349 TGAGAGGTCAAGTGCTCATTATTAAT 58.432 34.615 0.00 0.00 32.85 1.40
47 48 6.946340 TGAGAGGTCAAGTGCTCATTATTAA 58.054 36.000 0.00 0.00 32.85 1.40
48 49 6.544928 TGAGAGGTCAAGTGCTCATTATTA 57.455 37.500 0.00 0.00 32.85 0.98
49 50 5.426689 TGAGAGGTCAAGTGCTCATTATT 57.573 39.130 0.00 0.00 32.85 1.40
50 51 5.426689 TTGAGAGGTCAAGTGCTCATTAT 57.573 39.130 0.00 0.00 37.79 1.28
51 52 4.890158 TTGAGAGGTCAAGTGCTCATTA 57.110 40.909 0.00 0.00 37.79 1.90
52 53 3.777106 TTGAGAGGTCAAGTGCTCATT 57.223 42.857 0.00 0.00 37.79 2.57
53 54 3.678252 CGATTGAGAGGTCAAGTGCTCAT 60.678 47.826 0.00 0.00 45.96 2.90
54 55 2.353109 CGATTGAGAGGTCAAGTGCTCA 60.353 50.000 0.00 0.00 45.96 4.26
55 56 2.266554 CGATTGAGAGGTCAAGTGCTC 58.733 52.381 0.00 0.00 45.96 4.26
64 65 2.388735 TGATGTAGGCGATTGAGAGGT 58.611 47.619 0.00 0.00 0.00 3.85
75 76 3.664107 TGACAGTGTTCTTGATGTAGGC 58.336 45.455 0.00 0.00 0.00 3.93
76 77 5.482006 TGATGACAGTGTTCTTGATGTAGG 58.518 41.667 0.00 0.00 0.00 3.18
86 87 2.359900 GTGGGGATGATGACAGTGTTC 58.640 52.381 0.00 0.00 0.00 3.18
89 90 0.462581 CCGTGGGGATGATGACAGTG 60.463 60.000 0.00 0.00 34.06 3.66
90 91 0.909610 ACCGTGGGGATGATGACAGT 60.910 55.000 0.00 0.00 36.97 3.55
91 92 0.179073 GACCGTGGGGATGATGACAG 60.179 60.000 0.00 0.00 36.97 3.51
92 93 0.907230 TGACCGTGGGGATGATGACA 60.907 55.000 0.00 0.00 36.97 3.58
93 94 0.462047 GTGACCGTGGGGATGATGAC 60.462 60.000 0.00 0.00 36.97 3.06
94 95 0.617535 AGTGACCGTGGGGATGATGA 60.618 55.000 0.00 0.00 36.97 2.92
95 96 0.179073 GAGTGACCGTGGGGATGATG 60.179 60.000 0.00 0.00 36.97 3.07
112 113 6.846283 GCGTGAAGAATAAATTAATGACCGAG 59.154 38.462 0.00 0.00 0.00 4.63
120 121 4.515361 TCGGGGCGTGAAGAATAAATTAA 58.485 39.130 0.00 0.00 0.00 1.40
121 122 4.139859 TCGGGGCGTGAAGAATAAATTA 57.860 40.909 0.00 0.00 0.00 1.40
127 128 0.036306 AGTTTCGGGGCGTGAAGAAT 59.964 50.000 0.00 0.00 0.00 2.40
136 137 0.031585 GGTCAACAAAGTTTCGGGGC 59.968 55.000 0.00 0.00 0.00 5.80
141 142 5.049167 TCAATGCATGGTCAACAAAGTTTC 58.951 37.500 0.00 0.00 0.00 2.78
145 146 4.809958 TGTTTCAATGCATGGTCAACAAAG 59.190 37.500 15.23 0.00 0.00 2.77
147 148 4.397481 TGTTTCAATGCATGGTCAACAA 57.603 36.364 15.23 0.00 0.00 2.83
153 154 3.133362 GGATGGATGTTTCAATGCATGGT 59.867 43.478 0.00 0.00 38.56 3.55
190 191 1.219469 TGGACTCTGAATATCCCGGGA 59.781 52.381 29.18 29.18 0.00 5.14
202 203 2.732412 ACATCGTGAGTTGGACTCTG 57.268 50.000 9.27 2.44 45.27 3.35
250 251 1.346365 TCGATCGCCTCTTTTTCACG 58.654 50.000 11.09 0.00 0.00 4.35
368 386 6.512297 TGCCTTTTGAGGATTAAAGTGTTTC 58.488 36.000 0.00 0.00 31.07 2.78
415 434 7.875041 CCGAGATGAGTACAATCATTTTAGGAT 59.125 37.037 10.24 0.00 40.02 3.24
432 452 0.938637 GTCGAGCATGCCGAGATGAG 60.939 60.000 25.06 5.92 36.66 2.90
439 459 0.647410 CAAGTTAGTCGAGCATGCCG 59.353 55.000 15.66 17.53 0.00 5.69
443 463 4.579869 ACCAAATCAAGTTAGTCGAGCAT 58.420 39.130 0.00 0.00 0.00 3.79
488 513 6.366332 CAGTTCTTTTCTAGCAACGTGACTAT 59.634 38.462 0.00 0.00 0.00 2.12
489 514 5.690409 CAGTTCTTTTCTAGCAACGTGACTA 59.310 40.000 0.00 0.00 0.00 2.59
490 515 4.508124 CAGTTCTTTTCTAGCAACGTGACT 59.492 41.667 0.00 0.00 0.00 3.41
491 516 4.762809 CAGTTCTTTTCTAGCAACGTGAC 58.237 43.478 0.00 0.00 0.00 3.67
492 517 3.247648 GCAGTTCTTTTCTAGCAACGTGA 59.752 43.478 0.00 0.00 0.00 4.35
493 518 3.248602 AGCAGTTCTTTTCTAGCAACGTG 59.751 43.478 0.00 0.00 0.00 4.49
503 529 9.899226 AACATTTGACTAATAGCAGTTCTTTTC 57.101 29.630 0.00 0.00 0.00 2.29
506 532 8.621532 TCAACATTTGACTAATAGCAGTTCTT 57.378 30.769 0.00 0.00 34.08 2.52
561 587 9.912634 CAATCCTAGCTCTAAACATTTTCAAAA 57.087 29.630 0.00 0.00 0.00 2.44
562 588 9.077885 ACAATCCTAGCTCTAAACATTTTCAAA 57.922 29.630 0.00 0.00 0.00 2.69
563 589 8.635765 ACAATCCTAGCTCTAAACATTTTCAA 57.364 30.769 0.00 0.00 0.00 2.69
564 590 8.514594 CAACAATCCTAGCTCTAAACATTTTCA 58.485 33.333 0.00 0.00 0.00 2.69
565 591 8.730680 TCAACAATCCTAGCTCTAAACATTTTC 58.269 33.333 0.00 0.00 0.00 2.29
566 592 8.635765 TCAACAATCCTAGCTCTAAACATTTT 57.364 30.769 0.00 0.00 0.00 1.82
567 593 7.885399 ACTCAACAATCCTAGCTCTAAACATTT 59.115 33.333 0.00 0.00 0.00 2.32
568 594 7.398024 ACTCAACAATCCTAGCTCTAAACATT 58.602 34.615 0.00 0.00 0.00 2.71
569 595 6.951971 ACTCAACAATCCTAGCTCTAAACAT 58.048 36.000 0.00 0.00 0.00 2.71
570 596 6.360370 ACTCAACAATCCTAGCTCTAAACA 57.640 37.500 0.00 0.00 0.00 2.83
571 597 5.517054 CGACTCAACAATCCTAGCTCTAAAC 59.483 44.000 0.00 0.00 0.00 2.01
572 598 5.185249 ACGACTCAACAATCCTAGCTCTAAA 59.815 40.000 0.00 0.00 0.00 1.85
573 599 4.705507 ACGACTCAACAATCCTAGCTCTAA 59.294 41.667 0.00 0.00 0.00 2.10
574 600 4.270834 ACGACTCAACAATCCTAGCTCTA 58.729 43.478 0.00 0.00 0.00 2.43
575 601 3.093057 ACGACTCAACAATCCTAGCTCT 58.907 45.455 0.00 0.00 0.00 4.09
616 642 7.428826 AGAAAAAGCTCAAGGTTTGTTGATAG 58.571 34.615 7.87 0.00 43.95 2.08
618 644 6.225981 AGAAAAAGCTCAAGGTTTGTTGAT 57.774 33.333 7.87 0.00 43.95 2.57
623 649 5.268118 AGGAAGAAAAAGCTCAAGGTTTG 57.732 39.130 7.87 0.00 43.95 2.93
684 718 5.481122 TGAATGAGGAGATGCAATTTTTGGA 59.519 36.000 0.00 0.00 34.77 3.53
687 721 6.349243 TGTGAATGAGGAGATGCAATTTTT 57.651 33.333 0.00 0.00 0.00 1.94
693 727 3.639672 ACATGTGAATGAGGAGATGCA 57.360 42.857 0.00 0.00 0.00 3.96
694 728 6.630444 AATTACATGTGAATGAGGAGATGC 57.370 37.500 9.11 0.00 0.00 3.91
696 730 7.012704 CCGAAAATTACATGTGAATGAGGAGAT 59.987 37.037 9.11 0.00 0.00 2.75
701 735 6.841119 TCACCGAAAATTACATGTGAATGAG 58.159 36.000 9.11 0.00 30.44 2.90
729 850 1.079197 ATCACGCACGAATGAGGCA 60.079 52.632 0.00 0.00 0.00 4.75
737 858 3.930838 GTGACACATCACGCACGA 58.069 55.556 0.00 0.00 45.66 4.35
874 1002 1.688197 CGGCTCGGGTTAATAAGGGTA 59.312 52.381 0.00 0.00 0.00 3.69
935 1063 2.047179 GGTGGTGGACTTCGGCTC 60.047 66.667 0.00 0.00 0.00 4.70
936 1064 2.448582 TTGGTGGTGGACTTCGGCT 61.449 57.895 0.00 0.00 0.00 5.52
1409 1816 1.014564 CGAGCGTCTTCTTGTTCCCC 61.015 60.000 0.00 0.00 0.00 4.81
1643 2050 2.420890 GGATCAGAGGGCAGCTCG 59.579 66.667 0.00 0.00 0.00 5.03
1653 2060 1.561643 GCGATAGGGATGGGATCAGA 58.438 55.000 0.00 0.00 0.00 3.27
1689 2099 2.430921 CTCGTCCACTGTCACGGC 60.431 66.667 8.49 0.00 36.64 5.68
1691 2101 1.730902 CTGCTCGTCCACTGTCACG 60.731 63.158 3.03 3.03 37.36 4.35
1736 2176 0.962356 CTGTCACACCCCCAATCTGC 60.962 60.000 0.00 0.00 0.00 4.26
1794 2234 2.619074 GGAACACCTCAAGATCCCCAAG 60.619 54.545 0.00 0.00 0.00 3.61
1837 2277 1.283613 ACTGTGGTTCACTGTTTCCCA 59.716 47.619 5.03 0.00 42.28 4.37
1907 2347 3.003173 CTGGGCCGACCTTGAGGA 61.003 66.667 3.59 0.00 41.11 3.71
1925 2365 6.030548 ACCTCAGATATGTTACCATCATCG 57.969 41.667 0.00 0.00 32.29 3.84
1931 2371 3.028130 TGCGACCTCAGATATGTTACCA 58.972 45.455 0.00 0.00 0.00 3.25
1990 2430 2.611971 GGGAGTTCAGTGCACGTATTCA 60.612 50.000 12.01 0.00 0.00 2.57
2067 2507 6.633668 TTCTGAGAATTCTTCGAACGATTC 57.366 37.500 9.87 15.81 34.02 2.52
2076 2516 6.604795 TGGGGAATGAATTCTGAGAATTCTTC 59.395 38.462 34.61 31.07 37.50 2.87
2094 2534 0.112995 TGAAGCTGCAGTTGGGGAAT 59.887 50.000 16.64 0.00 0.00 3.01
2435 2880 9.146984 CAATTATGACAAATGCAGAAGACAAAT 57.853 29.630 0.00 0.00 0.00 2.32
2438 2883 6.209192 ACCAATTATGACAAATGCAGAAGACA 59.791 34.615 0.00 0.00 0.00 3.41
2462 3144 4.327680 AGGATGAAGGCAGAAGTAACAAC 58.672 43.478 0.00 0.00 0.00 3.32
2464 3146 3.582647 TGAGGATGAAGGCAGAAGTAACA 59.417 43.478 0.00 0.00 0.00 2.41
2465 3147 3.935828 GTGAGGATGAAGGCAGAAGTAAC 59.064 47.826 0.00 0.00 0.00 2.50
2491 3173 9.868277 TCATTTTGTGTCTTCAAGTTTTGTAAT 57.132 25.926 0.00 0.00 0.00 1.89
2518 3204 8.141268 TCTCAAATACTGATCAAACCCAAAAAC 58.859 33.333 0.00 0.00 32.14 2.43
2561 3247 7.718753 ACTTCAAATTCTGACTCTGATGTCTTT 59.281 33.333 8.15 0.58 37.79 2.52
2574 3260 7.970061 GCTTATGCATGTTACTTCAAATTCTGA 59.030 33.333 10.16 0.00 39.41 3.27
2641 3354 2.067616 GCATTTTGCTCAGCGCTTG 58.932 52.632 7.50 4.72 40.96 4.01
2724 3437 2.049433 CACAAGCAGCCAAGCAGC 60.049 61.111 0.00 0.00 41.34 5.25
2789 3502 3.118629 TCATGTGGCCAGAATCTGTAGTC 60.119 47.826 5.11 0.00 0.00 2.59
2893 3606 7.968405 GGCATAAAATTTAGAAACGATGTCAGT 59.032 33.333 0.00 0.00 0.00 3.41
2904 3617 8.238631 GTGTCGTAAAGGGCATAAAATTTAGAA 58.761 33.333 0.00 0.00 0.00 2.10
2960 3674 3.343617 TGAGGGCAAATAGGTCTTTTCG 58.656 45.455 0.00 0.00 0.00 3.46
2995 3709 8.730680 AGCTAAACTACCACATGACAATTTTAG 58.269 33.333 0.00 6.44 0.00 1.85
3005 3719 6.317140 ACATGATGAAGCTAAACTACCACATG 59.683 38.462 0.00 0.00 33.36 3.21
3030 3744 2.369860 AGCACTGATCCAAACAGAGTGA 59.630 45.455 10.39 0.00 38.55 3.41
3031 3745 2.775890 AGCACTGATCCAAACAGAGTG 58.224 47.619 0.00 0.00 38.55 3.51
3235 4003 1.263356 TTCTACGTTGGCTGGCTAGT 58.737 50.000 0.00 2.65 0.00 2.57
3297 4068 2.749076 TGGACGTGTACTGCTATACGTT 59.251 45.455 8.83 0.00 46.90 3.99
3373 4146 1.009900 CGCCGAGACGTAGATGGTC 60.010 63.158 0.00 0.00 34.62 4.02
3452 4226 1.610624 CCTTGACGGTGTTGTAGCCAT 60.611 52.381 0.00 0.00 0.00 4.40
3505 4299 6.521477 TGATCAAAATTTTACGCGTATGTGTG 59.479 34.615 21.30 13.21 39.65 3.82
3544 4340 5.079643 ACACATGAAAAGACCTATTTGCCT 58.920 37.500 0.00 0.00 0.00 4.75
3613 4409 8.732746 ATAACACCGAGTCTAAATTTTATGCT 57.267 30.769 0.00 0.00 0.00 3.79
3716 4513 7.981789 CAGTTCAAACAGACATAGCCTAATAGA 59.018 37.037 0.00 0.00 0.00 1.98
3717 4514 7.981789 TCAGTTCAAACAGACATAGCCTAATAG 59.018 37.037 0.00 0.00 0.00 1.73
3718 4515 7.847096 TCAGTTCAAACAGACATAGCCTAATA 58.153 34.615 0.00 0.00 0.00 0.98
3719 4516 6.711277 TCAGTTCAAACAGACATAGCCTAAT 58.289 36.000 0.00 0.00 0.00 1.73
3720 4517 6.109156 TCAGTTCAAACAGACATAGCCTAA 57.891 37.500 0.00 0.00 0.00 2.69
3733 4530 5.523369 ACTAAAATGCAGCTCAGTTCAAAC 58.477 37.500 0.00 0.00 30.90 2.93
3766 4563 2.645838 ATCAGGTTCACACAGCAAGT 57.354 45.000 0.00 0.00 0.00 3.16
3787 4584 7.552458 TGTAGTTCACACCATAGCAAATATG 57.448 36.000 0.00 0.00 35.54 1.78
3788 4585 8.752005 AATGTAGTTCACACCATAGCAAATAT 57.248 30.769 0.00 0.00 40.86 1.28
4127 4929 4.947388 TGTGTAATTTGATTACTGGGCTCC 59.053 41.667 10.98 0.00 44.17 4.70
4157 4959 1.548081 TCAATGGCATGTTGGTGAGG 58.452 50.000 0.00 0.00 0.00 3.86
4212 5014 0.036952 AACCCTGACACAGATCGCAG 60.037 55.000 0.00 0.00 32.44 5.18
4331 5136 4.334552 TGGATGCAGAAATTAAGTGCTCA 58.665 39.130 0.00 0.00 38.09 4.26
4340 5145 6.549433 AACATACCATTGGATGCAGAAATT 57.451 33.333 10.37 0.00 0.00 1.82
4358 5163 5.451242 GGCAAACTCCAAACTGTCAAACATA 60.451 40.000 0.00 0.00 0.00 2.29
4614 5419 8.335356 AGGAATTTATACGTGATCAATTGAACG 58.665 33.333 24.17 24.17 41.64 3.95
4618 5423 9.655769 CTGAAGGAATTTATACGTGATCAATTG 57.344 33.333 0.00 0.00 0.00 2.32
4622 5427 6.761242 CACCTGAAGGAATTTATACGTGATCA 59.239 38.462 2.62 0.00 38.94 2.92
4640 5445 9.431887 GACATTTGACTAAGTTATACACCTGAA 57.568 33.333 0.00 0.00 0.00 3.02
4713 5522 3.119495 GGTTATGTGGTTGCTCATTCACC 60.119 47.826 0.00 0.00 0.00 4.02
4752 5561 2.490903 AGCTGAATTGAACCATGACTGC 59.509 45.455 0.00 0.00 0.00 4.40
4975 5784 0.896940 CCAGCAGCAAAGGTCCACAT 60.897 55.000 0.00 0.00 0.00 3.21
5039 5848 4.510711 GTGCATCATCTTGTCATGTAGAGG 59.489 45.833 0.00 0.00 0.00 3.69
5040 5849 5.114081 TGTGCATCATCTTGTCATGTAGAG 58.886 41.667 0.00 0.00 0.00 2.43
5041 5850 5.088680 TGTGCATCATCTTGTCATGTAGA 57.911 39.130 0.00 0.00 0.00 2.59
5113 5931 9.787532 GAATGATAGCAAAACAATAACTAGCAA 57.212 29.630 0.00 0.00 33.47 3.91
5116 5934 8.902806 TGGGAATGATAGCAAAACAATAACTAG 58.097 33.333 0.00 0.00 0.00 2.57
5121 5939 7.344093 TCCAATGGGAATGATAGCAAAACAATA 59.656 33.333 0.00 0.00 41.32 1.90
5172 5990 1.892474 TCTTCGCCTTTTTCCAATGGG 59.108 47.619 0.00 0.00 0.00 4.00
5176 5994 2.358322 ACCTCTTCGCCTTTTTCCAA 57.642 45.000 0.00 0.00 0.00 3.53
5177 5995 2.635915 TCTACCTCTTCGCCTTTTTCCA 59.364 45.455 0.00 0.00 0.00 3.53
5179 5997 3.125487 GCTTCTACCTCTTCGCCTTTTTC 59.875 47.826 0.00 0.00 0.00 2.29
5180 5998 3.075148 GCTTCTACCTCTTCGCCTTTTT 58.925 45.455 0.00 0.00 0.00 1.94
5181 5999 2.038557 TGCTTCTACCTCTTCGCCTTTT 59.961 45.455 0.00 0.00 0.00 2.27
5182 6000 1.623811 TGCTTCTACCTCTTCGCCTTT 59.376 47.619 0.00 0.00 0.00 3.11
5183 6001 1.267121 TGCTTCTACCTCTTCGCCTT 58.733 50.000 0.00 0.00 0.00 4.35
5184 6002 1.490574 ATGCTTCTACCTCTTCGCCT 58.509 50.000 0.00 0.00 0.00 5.52
5185 6003 2.317530 AATGCTTCTACCTCTTCGCC 57.682 50.000 0.00 0.00 0.00 5.54
5186 6004 2.609916 GGAAATGCTTCTACCTCTTCGC 59.390 50.000 0.00 0.00 0.00 4.70
5187 6005 3.861840 TGGAAATGCTTCTACCTCTTCG 58.138 45.455 0.00 0.00 0.00 3.79
5188 6006 5.707764 ACTTTGGAAATGCTTCTACCTCTTC 59.292 40.000 0.00 0.00 0.00 2.87
5189 6007 5.474876 CACTTTGGAAATGCTTCTACCTCTT 59.525 40.000 0.00 0.00 0.00 2.85
5190 6008 5.006386 CACTTTGGAAATGCTTCTACCTCT 58.994 41.667 0.00 0.00 0.00 3.69
5191 6009 4.762251 ACACTTTGGAAATGCTTCTACCTC 59.238 41.667 0.00 0.00 0.00 3.85
5192 6010 4.520492 CACACTTTGGAAATGCTTCTACCT 59.480 41.667 0.00 0.00 0.00 3.08
5193 6011 4.518970 TCACACTTTGGAAATGCTTCTACC 59.481 41.667 0.00 0.00 0.00 3.18
5194 6012 5.689383 TCACACTTTGGAAATGCTTCTAC 57.311 39.130 0.00 0.00 0.00 2.59
5195 6013 6.899393 AATCACACTTTGGAAATGCTTCTA 57.101 33.333 0.00 0.00 0.00 2.10
5196 6014 5.796424 AATCACACTTTGGAAATGCTTCT 57.204 34.783 0.00 0.00 0.00 2.85
5197 6015 5.984926 TCAAATCACACTTTGGAAATGCTTC 59.015 36.000 0.00 0.00 36.87 3.86
5198 6016 5.916318 TCAAATCACACTTTGGAAATGCTT 58.084 33.333 0.00 0.00 36.87 3.91
5199 6017 5.510179 CCTCAAATCACACTTTGGAAATGCT 60.510 40.000 0.00 0.00 36.87 3.79
5200 6018 4.687483 CCTCAAATCACACTTTGGAAATGC 59.313 41.667 0.00 0.00 36.87 3.56
5201 6019 5.693104 CACCTCAAATCACACTTTGGAAATG 59.307 40.000 0.00 0.00 36.87 2.32
5202 6020 5.363580 ACACCTCAAATCACACTTTGGAAAT 59.636 36.000 0.00 0.00 36.87 2.17
5203 6021 4.709397 ACACCTCAAATCACACTTTGGAAA 59.291 37.500 0.00 0.00 36.87 3.13
5204 6022 4.277476 ACACCTCAAATCACACTTTGGAA 58.723 39.130 0.00 0.00 36.87 3.53
5205 6023 3.897239 ACACCTCAAATCACACTTTGGA 58.103 40.909 0.00 0.00 36.87 3.53
5206 6024 4.654091 AACACCTCAAATCACACTTTGG 57.346 40.909 0.00 0.00 36.87 3.28
5207 6025 6.377327 ACTAACACCTCAAATCACACTTTG 57.623 37.500 0.00 0.00 37.44 2.77
5208 6026 7.404671 AAACTAACACCTCAAATCACACTTT 57.595 32.000 0.00 0.00 0.00 2.66
5234 6052 0.680280 CAAGCCTCCTGCATGAGCTT 60.680 55.000 13.07 15.31 41.13 3.74
5306 6124 6.716173 GGCAATAGCTAAGTAGGAGTAGTAGT 59.284 42.308 0.00 0.00 41.70 2.73
5307 6125 6.151480 GGGCAATAGCTAAGTAGGAGTAGTAG 59.849 46.154 0.00 0.00 41.70 2.57
5308 6126 6.008960 GGGCAATAGCTAAGTAGGAGTAGTA 58.991 44.000 0.00 0.00 41.70 1.82
5309 6127 4.833938 GGGCAATAGCTAAGTAGGAGTAGT 59.166 45.833 0.00 0.00 41.70 2.73
5311 6129 5.076057 AGGGCAATAGCTAAGTAGGAGTA 57.924 43.478 0.00 0.00 41.70 2.59
5312 6130 3.898741 GAGGGCAATAGCTAAGTAGGAGT 59.101 47.826 0.00 0.00 41.70 3.85
5313 6131 3.898123 TGAGGGCAATAGCTAAGTAGGAG 59.102 47.826 0.00 0.00 41.70 3.69
5314 6132 3.923648 TGAGGGCAATAGCTAAGTAGGA 58.076 45.455 0.00 0.00 41.70 2.94
5315 6133 4.040952 ACATGAGGGCAATAGCTAAGTAGG 59.959 45.833 0.00 0.00 41.70 3.18
5316 6134 4.993584 CACATGAGGGCAATAGCTAAGTAG 59.006 45.833 0.00 0.00 41.70 2.57
5317 6135 4.202357 CCACATGAGGGCAATAGCTAAGTA 60.202 45.833 0.00 0.00 41.70 2.24
5335 6156 4.774124 CATAAGATGTCTCACACCCACAT 58.226 43.478 0.00 0.00 33.32 3.21
5353 6174 4.336993 GTGGTTTAATCACATCCGGCATAA 59.663 41.667 3.16 0.00 35.39 1.90
5366 6187 3.312697 GCATCCCTCTTCGTGGTTTAATC 59.687 47.826 0.00 0.00 0.00 1.75
5429 6250 9.491675 ACACATTATCATGAATTTTGAGCAAAA 57.508 25.926 10.43 10.43 38.06 2.44
5467 6289 3.748568 CAGTGGGACAGAAAGAAGTAAGC 59.251 47.826 0.00 0.00 41.80 3.09
5468 6290 4.962155 ACAGTGGGACAGAAAGAAGTAAG 58.038 43.478 0.00 0.00 41.80 2.34
5471 6293 3.933861 AACAGTGGGACAGAAAGAAGT 57.066 42.857 0.00 0.00 41.80 3.01
5472 6294 4.199310 TCAAACAGTGGGACAGAAAGAAG 58.801 43.478 0.00 0.00 41.80 2.85
5473 6295 4.229304 TCAAACAGTGGGACAGAAAGAA 57.771 40.909 0.00 0.00 41.80 2.52
5474 6296 3.924114 TCAAACAGTGGGACAGAAAGA 57.076 42.857 0.00 0.00 41.80 2.52
5475 6297 4.136796 TCATCAAACAGTGGGACAGAAAG 58.863 43.478 0.00 0.00 41.80 2.62
5476 6298 4.163441 TCATCAAACAGTGGGACAGAAA 57.837 40.909 0.00 0.00 41.80 2.52
5479 6303 4.261741 CCTTTTCATCAAACAGTGGGACAG 60.262 45.833 0.00 0.00 41.80 3.51
5486 6310 3.259123 GGCCATCCTTTTCATCAAACAGT 59.741 43.478 0.00 0.00 0.00 3.55
5511 6335 5.335740 GGCAAAATGAGAGATATGCATCAGG 60.336 44.000 0.19 0.00 35.57 3.86
5512 6336 5.240844 TGGCAAAATGAGAGATATGCATCAG 59.759 40.000 0.19 0.00 35.57 2.90
5549 6373 8.246180 AGCAAATGAATTACAGGTCTAACAATG 58.754 33.333 0.00 0.00 0.00 2.82
5552 6376 6.939730 TGAGCAAATGAATTACAGGTCTAACA 59.060 34.615 0.00 0.00 0.00 2.41
5572 6397 3.632643 TCACAGAAATATGGCTGAGCA 57.367 42.857 6.82 0.00 36.07 4.26
5573 6398 4.970662 TTTCACAGAAATATGGCTGAGC 57.029 40.909 10.97 0.00 36.07 4.26
5574 6399 8.341173 GTCTAATTTCACAGAAATATGGCTGAG 58.659 37.037 10.97 4.67 36.07 3.35
5575 6400 7.828717 TGTCTAATTTCACAGAAATATGGCTGA 59.171 33.333 10.97 0.00 36.07 4.26
5576 6401 7.988737 TGTCTAATTTCACAGAAATATGGCTG 58.011 34.615 5.50 4.10 38.10 4.85
5606 6431 4.393062 AGTCAAACATTGTGGTCGATGATC 59.607 41.667 0.00 0.00 38.46 2.92
5673 6498 9.125026 AGAAATTACAGTCTTTGACTTCATTGT 57.875 29.630 0.00 0.00 41.37 2.71
5674 6499 9.956720 AAGAAATTACAGTCTTTGACTTCATTG 57.043 29.630 0.00 0.00 41.37 2.82
5698 6523 8.192774 TCCATGCTTCAGCTAAATTTTCATAAG 58.807 33.333 0.00 0.00 42.66 1.73
5709 6536 0.613260 ACCGTCCATGCTTCAGCTAA 59.387 50.000 0.00 0.00 42.66 3.09
5725 6552 2.283351 GTGGCAGCTAATACGTTTACCG 59.717 50.000 0.00 0.00 44.03 4.02
5727 6554 4.932268 TTGTGGCAGCTAATACGTTTAC 57.068 40.909 0.00 0.00 0.00 2.01
5733 6588 7.389053 AGCTCTATATTTTGTGGCAGCTAATAC 59.611 37.037 0.00 0.00 34.21 1.89
5734 6589 7.453393 AGCTCTATATTTTGTGGCAGCTAATA 58.547 34.615 0.00 0.00 34.21 0.98
5741 6596 7.394359 AGAAGAAAAGCTCTATATTTTGTGGCA 59.606 33.333 0.00 0.00 32.46 4.92
5758 6613 7.278424 TGCTTTTGGTTTTCATGAGAAGAAAAG 59.722 33.333 23.37 23.37 43.34 2.27
5762 6617 5.593909 TCTGCTTTTGGTTTTCATGAGAAGA 59.406 36.000 0.00 0.00 34.71 2.87
5763 6618 5.689068 GTCTGCTTTTGGTTTTCATGAGAAG 59.311 40.000 0.00 0.00 34.71 2.85
5766 6621 4.935702 TGTCTGCTTTTGGTTTTCATGAG 58.064 39.130 0.00 0.00 0.00 2.90
5781 6636 9.252962 CTTCAAAATAAAATTTGTCTGTCTGCT 57.747 29.630 0.00 0.00 40.40 4.24
5795 6650 9.352784 CTGTGTGTGTTTCTCTTCAAAATAAAA 57.647 29.630 0.00 0.00 0.00 1.52
5801 6656 4.009675 AGCTGTGTGTGTTTCTCTTCAAA 58.990 39.130 0.00 0.00 0.00 2.69
5802 6657 3.609853 AGCTGTGTGTGTTTCTCTTCAA 58.390 40.909 0.00 0.00 0.00 2.69
5803 6658 3.198068 GAGCTGTGTGTGTTTCTCTTCA 58.802 45.455 0.00 0.00 0.00 3.02
5813 6668 0.816825 AGCCAGTTGAGCTGTGTGTG 60.817 55.000 0.00 0.00 43.55 3.82
5823 6678 3.741075 CGAATATGCCTACAGCCAGTTGA 60.741 47.826 0.00 0.00 42.71 3.18
5824 6679 2.545526 CGAATATGCCTACAGCCAGTTG 59.454 50.000 0.00 0.00 42.71 3.16
5826 6681 2.039418 TCGAATATGCCTACAGCCAGT 58.961 47.619 0.00 0.00 42.71 4.00
5827 6682 2.224042 TGTCGAATATGCCTACAGCCAG 60.224 50.000 0.00 0.00 42.71 4.85
5829 6684 2.135933 GTGTCGAATATGCCTACAGCC 58.864 52.381 0.00 0.00 42.71 4.85
5830 6685 2.797156 CTGTGTCGAATATGCCTACAGC 59.203 50.000 0.00 0.00 44.14 4.40
5832 6687 3.951680 TCTCTGTGTCGAATATGCCTACA 59.048 43.478 0.00 0.00 0.00 2.74
5845 6785 0.723981 GAATGCGCCTTCTCTGTGTC 59.276 55.000 16.94 0.00 0.00 3.67
5901 6841 2.159310 TGTTTGTTTCAGCGGTCCAAAG 60.159 45.455 0.00 0.00 0.00 2.77
5917 6859 2.032979 GGCTCGCCATTTTGTTTGTTTG 60.033 45.455 2.41 0.00 35.81 2.93
5963 6907 0.709992 AGGGGATAGGCCAGCAAAAA 59.290 50.000 5.01 0.00 38.95 1.94
5965 6909 0.709992 AAAGGGGATAGGCCAGCAAA 59.290 50.000 5.01 0.00 38.95 3.68
5966 6910 0.258774 GAAAGGGGATAGGCCAGCAA 59.741 55.000 5.01 0.00 38.95 3.91
5990 6940 2.128035 GACGAACCACACTGACTGAAG 58.872 52.381 0.00 0.00 0.00 3.02
5991 6941 1.202486 GGACGAACCACACTGACTGAA 60.202 52.381 0.00 0.00 38.79 3.02
6003 6953 1.757699 AGGAGATAAGCAGGACGAACC 59.242 52.381 0.00 0.00 39.35 3.62
6004 6954 2.223852 GGAGGAGATAAGCAGGACGAAC 60.224 54.545 0.00 0.00 0.00 3.95
6005 6955 2.032620 GGAGGAGATAAGCAGGACGAA 58.967 52.381 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.