Multiple sequence alignment - TraesCS5D01G279000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G279000 chr5D 100.000 4313 0 0 1 4313 381032811 381028499 0.000000e+00 7965.0
1 TraesCS5D01G279000 chr5D 92.331 326 22 3 2338 2661 381030392 381030068 1.090000e-125 460.0
2 TraesCS5D01G279000 chr5D 92.331 326 22 3 2420 2744 381030474 381030151 1.090000e-125 460.0
3 TraesCS5D01G279000 chr5D 89.683 252 22 4 2338 2587 381030310 381030061 6.960000e-83 318.0
4 TraesCS5D01G279000 chr5D 89.683 252 22 4 2502 2751 381030474 381030225 6.960000e-83 318.0
5 TraesCS5D01G279000 chr5D 87.059 170 18 4 2584 2751 381030474 381030307 5.690000e-44 189.0
6 TraesCS5D01G279000 chr5D 97.561 41 1 0 38 78 381032741 381032701 2.150000e-08 71.3
7 TraesCS5D01G279000 chr5D 97.561 41 1 0 71 111 381032774 381032734 2.150000e-08 71.3
8 TraesCS5D01G279000 chr5B 83.812 2125 177 69 71 2148 457131468 457129464 0.000000e+00 1864.0
9 TraesCS5D01G279000 chr5B 95.817 502 18 1 3815 4313 457127838 457127337 0.000000e+00 808.0
10 TraesCS5D01G279000 chr5B 87.612 557 48 16 2264 2810 457129422 457128877 1.020000e-175 627.0
11 TraesCS5D01G279000 chr5B 89.351 385 16 8 3416 3786 457128277 457127904 1.090000e-125 460.0
12 TraesCS5D01G279000 chr5B 88.000 275 9 8 2844 3116 457128884 457128632 1.950000e-78 303.0
13 TraesCS5D01G279000 chr5B 93.243 148 9 1 2420 2566 457129349 457129202 2.610000e-52 217.0
14 TraesCS5D01G279000 chr5B 94.444 54 3 0 10 63 457131496 457131443 2.760000e-12 84.2
15 TraesCS5D01G279000 chr5A 86.197 1449 107 36 738 2148 481899951 481898558 0.000000e+00 1482.0
16 TraesCS5D01G279000 chr5A 94.872 585 28 2 2533 3116 481897748 481897165 0.000000e+00 913.0
17 TraesCS5D01G279000 chr5A 95.618 502 19 1 3815 4313 481896370 481895869 0.000000e+00 802.0
18 TraesCS5D01G279000 chr5A 91.558 462 33 6 2264 2722 481898517 481898059 2.190000e-177 632.0
19 TraesCS5D01G279000 chr5A 90.488 410 31 8 2338 2744 481898362 481897958 6.350000e-148 534.0
20 TraesCS5D01G279000 chr5A 84.164 562 50 24 71 625 481900706 481900177 3.850000e-140 508.0
21 TraesCS5D01G279000 chr5A 89.974 379 15 13 3419 3784 481896807 481896439 6.530000e-128 468.0
22 TraesCS5D01G279000 chr5A 90.093 323 26 6 2420 2739 481898444 481898125 8.630000e-112 414.0
23 TraesCS5D01G279000 chr5A 89.264 326 29 4 2339 2662 481898278 481897957 1.870000e-108 403.0
24 TraesCS5D01G279000 chr5A 90.361 249 20 2 2338 2585 481898198 481897953 1.500000e-84 324.0
25 TraesCS5D01G279000 chr5A 90.000 210 16 2 3147 3356 481897028 481896824 2.560000e-67 267.0
26 TraesCS5D01G279000 chr5A 93.590 78 5 0 1 78 481900743 481900666 2.730000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G279000 chr5D 381028499 381032811 4312 True 1231.575000 7965 93.276125 1 4313 8 chr5D.!!$R1 4312
1 TraesCS5D01G279000 chr5B 457127337 457131496 4159 True 623.314286 1864 90.325571 10 4313 7 chr5B.!!$R1 4303
2 TraesCS5D01G279000 chr5A 481895869 481900743 4874 True 572.000000 1482 90.514917 1 4313 12 chr5A.!!$R1 4312

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
413 423 0.032217 TGATGAAAAGGATGGCCCCC 60.032 55.0 0.00 0.66 34.66 5.40 F
892 1028 0.474614 GGCCTATCCCCTTTCACTCC 59.525 60.0 0.00 0.00 0.00 3.85 F
1731 1895 0.395311 ATTGAGGCCATCAGGTGCTG 60.395 55.0 5.01 0.00 39.68 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1230 1387 0.173255 AAATGGGAAAATGGCGCGAG 59.827 50.0 12.1 0.0 0.0 5.03 R
1813 1977 0.472471 ACCCATTTGAGACACCACGT 59.528 50.0 0.0 0.0 0.0 4.49 R
3371 4152 0.034756 GGAATGTTGTTGGTTGGGGC 59.965 55.0 0.0 0.0 0.0 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.844211 TCATTACCCCTCAGTTGCTAGTT 59.156 43.478 0.00 0.00 0.00 2.24
40 41 9.573133 GTTGCTAGTTATTGTTTTGCTATCATT 57.427 29.630 0.00 0.00 0.00 2.57
41 42 9.787532 TTGCTAGTTATTGTTTTGCTATCATTC 57.212 29.630 0.00 0.00 0.00 2.67
42 43 8.405531 TGCTAGTTATTGTTTTGCTATCATTCC 58.594 33.333 0.00 0.00 0.00 3.01
43 44 7.862873 GCTAGTTATTGTTTTGCTATCATTCCC 59.137 37.037 0.00 0.00 0.00 3.97
44 45 7.716799 AGTTATTGTTTTGCTATCATTCCCA 57.283 32.000 0.00 0.00 0.00 4.37
45 46 8.310122 AGTTATTGTTTTGCTATCATTCCCAT 57.690 30.769 0.00 0.00 0.00 4.00
46 47 8.761689 AGTTATTGTTTTGCTATCATTCCCATT 58.238 29.630 0.00 0.00 0.00 3.16
47 48 8.819974 GTTATTGTTTTGCTATCATTCCCATTG 58.180 33.333 0.00 0.00 0.00 2.82
48 49 5.341872 TGTTTTGCTATCATTCCCATTGG 57.658 39.130 0.00 0.00 0.00 3.16
49 50 5.022122 TGTTTTGCTATCATTCCCATTGGA 58.978 37.500 3.62 0.00 39.54 3.53
58 59 3.755810 TCCCATTGGAAAAAGGCGA 57.244 47.368 3.62 0.00 37.86 5.54
59 60 2.002505 TCCCATTGGAAAAAGGCGAA 57.997 45.000 3.62 0.00 37.86 4.70
60 61 1.892474 TCCCATTGGAAAAAGGCGAAG 59.108 47.619 3.62 0.00 37.86 3.79
61 62 1.892474 CCCATTGGAAAAAGGCGAAGA 59.108 47.619 3.62 0.00 0.00 2.87
62 63 2.094545 CCCATTGGAAAAAGGCGAAGAG 60.095 50.000 3.62 0.00 0.00 2.85
63 64 2.094545 CCATTGGAAAAAGGCGAAGAGG 60.095 50.000 0.00 0.00 0.00 3.69
64 65 2.358322 TTGGAAAAAGGCGAAGAGGT 57.642 45.000 0.00 0.00 0.00 3.85
65 66 3.495434 TTGGAAAAAGGCGAAGAGGTA 57.505 42.857 0.00 0.00 0.00 3.08
66 67 3.053831 TGGAAAAAGGCGAAGAGGTAG 57.946 47.619 0.00 0.00 0.00 3.18
67 68 2.635915 TGGAAAAAGGCGAAGAGGTAGA 59.364 45.455 0.00 0.00 0.00 2.59
68 69 3.071892 TGGAAAAAGGCGAAGAGGTAGAA 59.928 43.478 0.00 0.00 0.00 2.10
69 70 3.685272 GGAAAAAGGCGAAGAGGTAGAAG 59.315 47.826 0.00 0.00 0.00 2.85
70 71 2.388310 AAAGGCGAAGAGGTAGAAGC 57.612 50.000 0.00 0.00 0.00 3.86
71 72 1.267121 AAGGCGAAGAGGTAGAAGCA 58.733 50.000 0.00 0.00 0.00 3.91
72 73 1.490574 AGGCGAAGAGGTAGAAGCAT 58.509 50.000 0.00 0.00 0.00 3.79
136 140 8.514330 AAGTGTGATTTGAGGTGTTAGTTTTA 57.486 30.769 0.00 0.00 0.00 1.52
154 158 0.914644 TAAGCTCATGCAGGAGGCTT 59.085 50.000 28.00 28.01 45.15 4.35
163 167 1.536073 GCAGGAGGCTTGGAAAACCC 61.536 60.000 0.00 0.00 40.25 4.11
164 168 0.178964 CAGGAGGCTTGGAAAACCCA 60.179 55.000 0.00 0.00 44.93 4.51
237 244 3.898123 CTCCTACTTAGCTATTGCCCTCA 59.102 47.826 0.00 0.00 40.80 3.86
255 262 2.235650 CTCATGTGGGTGTGAGACATCT 59.764 50.000 0.00 0.00 43.50 2.90
294 301 1.519455 CACGAAGAGGGATGCGACC 60.519 63.158 0.00 0.00 0.00 4.79
311 318 5.466819 TGCGACCTATGTGCATAGTATTAC 58.533 41.667 15.52 4.76 39.23 1.89
369 377 4.260985 TGATAATGTGTGCCTGGTTAGTG 58.739 43.478 0.00 0.00 0.00 2.74
370 378 1.247567 AATGTGTGCCTGGTTAGTGC 58.752 50.000 0.00 0.00 0.00 4.40
373 381 1.418264 TGTGTGCCTGGTTAGTGCTTA 59.582 47.619 0.00 0.00 0.00 3.09
374 382 1.804748 GTGTGCCTGGTTAGTGCTTAC 59.195 52.381 0.00 0.00 0.00 2.34
375 383 1.697432 TGTGCCTGGTTAGTGCTTACT 59.303 47.619 0.00 0.00 0.00 2.24
376 384 2.105821 TGTGCCTGGTTAGTGCTTACTT 59.894 45.455 0.00 0.00 0.00 2.24
377 385 2.742589 GTGCCTGGTTAGTGCTTACTTC 59.257 50.000 0.00 0.00 0.00 3.01
378 386 2.637872 TGCCTGGTTAGTGCTTACTTCT 59.362 45.455 0.00 0.00 0.00 2.85
381 391 4.154375 GCCTGGTTAGTGCTTACTTCTTTC 59.846 45.833 0.00 0.00 0.00 2.62
388 398 3.391296 AGTGCTTACTTCTTTCTGTCCCA 59.609 43.478 0.00 0.00 0.00 4.37
409 419 4.240096 CACTGTTTGATGAAAAGGATGGC 58.760 43.478 0.00 0.00 0.00 4.40
413 423 0.032217 TGATGAAAAGGATGGCCCCC 60.032 55.000 0.00 0.66 34.66 5.40
451 461 6.922957 TCTCATTTTGCCAACTGTAACATTTC 59.077 34.615 0.00 0.00 0.00 2.17
454 464 7.714377 TCATTTTGCCAACTGTAACATTTCATT 59.286 29.630 0.00 0.00 0.00 2.57
476 487 8.243426 TCATTGTTAGACCTGTAATTCATTTGC 58.757 33.333 0.00 0.00 0.00 3.68
477 488 7.759489 TTGTTAGACCTGTAATTCATTTGCT 57.241 32.000 0.00 0.00 0.00 3.91
478 489 7.377766 TGTTAGACCTGTAATTCATTTGCTC 57.622 36.000 0.00 0.00 0.00 4.26
508 519 2.972625 TCTGTGAAATTAGACAGGCCG 58.027 47.619 13.96 0.00 40.11 6.13
548 559 3.431415 TGACTATGAGGACCCATATCCG 58.569 50.000 3.89 0.00 44.22 4.18
549 560 3.075432 TGACTATGAGGACCCATATCCGA 59.925 47.826 3.89 0.00 44.22 4.55
552 563 1.938585 TGAGGACCCATATCCGATCC 58.061 55.000 0.00 0.00 44.22 3.36
559 570 6.453476 AGGACCCATATCCGATCCTTTATAT 58.547 40.000 0.00 0.00 44.22 0.86
560 571 6.909158 AGGACCCATATCCGATCCTTTATATT 59.091 38.462 0.00 0.00 44.22 1.28
625 638 8.192774 TCTTATGAAAATTTAGCTGAAGCATGG 58.807 33.333 4.90 0.00 45.16 3.66
627 640 5.713025 TGAAAATTTAGCTGAAGCATGGAC 58.287 37.500 4.90 0.00 45.16 4.02
629 642 1.737838 TTTAGCTGAAGCATGGACGG 58.262 50.000 4.90 0.00 45.16 4.79
635 676 4.366320 GCTGAAGCATGGACGGTAAACG 62.366 54.545 0.00 0.00 44.61 3.60
660 701 6.566197 ATTAGCTGCCACAAAATATAGAGC 57.434 37.500 0.00 0.00 0.00 4.09
664 705 5.420104 AGCTGCCACAAAATATAGAGCTTTT 59.580 36.000 0.00 0.00 31.53 2.27
665 706 5.745769 GCTGCCACAAAATATAGAGCTTTTC 59.254 40.000 0.00 0.00 0.00 2.29
668 709 7.538575 TGCCACAAAATATAGAGCTTTTCTTC 58.461 34.615 0.00 0.00 37.36 2.87
683 724 7.330262 AGCTTTTCTTCTCATGAAAACCAAAA 58.670 30.769 0.00 0.00 38.15 2.44
685 726 7.538303 TTTTCTTCTCATGAAAACCAAAAGC 57.462 32.000 0.00 0.00 38.15 3.51
697 738 5.343307 AAACCAAAAGCAGACAGACAAAT 57.657 34.783 0.00 0.00 0.00 2.32
703 744 7.986889 ACCAAAAGCAGACAGACAAATTTTATT 59.013 29.630 0.00 0.00 0.00 1.40
704 745 8.829612 CCAAAAGCAGACAGACAAATTTTATTT 58.170 29.630 0.00 0.00 0.00 1.40
725 766 3.266510 TGAAGAGAAACACACACAGCT 57.733 42.857 0.00 0.00 0.00 4.24
726 767 3.198068 TGAAGAGAAACACACACAGCTC 58.802 45.455 0.00 0.00 0.00 4.09
728 769 3.266510 AGAGAAACACACACAGCTCAA 57.733 42.857 0.00 0.00 0.00 3.02
729 770 2.939103 AGAGAAACACACACAGCTCAAC 59.061 45.455 0.00 0.00 0.00 3.18
819 947 1.082104 CGCTTTGGACCGCTGAAAC 60.082 57.895 0.00 0.00 0.00 2.78
840 968 1.864565 AACAAACAAAATGGCGAGCC 58.135 45.000 7.26 7.26 0.00 4.70
845 975 1.745115 CAAAATGGCGAGCCGAGGA 60.745 57.895 9.78 0.00 39.42 3.71
892 1028 0.474614 GGCCTATCCCCTTTCACTCC 59.525 60.000 0.00 0.00 0.00 3.85
893 1029 1.512735 GCCTATCCCCTTTCACTCCT 58.487 55.000 0.00 0.00 0.00 3.69
903 1039 3.397482 CCTTTCACTCCTTCAGTCAGTG 58.603 50.000 0.00 0.00 39.18 3.66
904 1040 3.181461 CCTTTCACTCCTTCAGTCAGTGT 60.181 47.826 0.00 0.00 38.94 3.55
905 1041 3.459232 TTCACTCCTTCAGTCAGTGTG 57.541 47.619 0.00 0.00 38.94 3.82
959 1095 2.331451 GTTGCTTGCCGTTTCGCT 59.669 55.556 0.00 0.00 0.00 4.93
1188 1341 2.496817 CCGCCCTCTTCTTCCTCG 59.503 66.667 0.00 0.00 0.00 4.63
1204 1357 1.405526 CCTCGTCTAATGTGGTGGGTG 60.406 57.143 0.00 0.00 0.00 4.61
1207 1364 1.821216 GTCTAATGTGGTGGGTGGTG 58.179 55.000 0.00 0.00 0.00 4.17
1281 1438 2.159490 GCTCTGGTAGAGTCGTTCTGAC 60.159 54.545 7.59 0.00 44.12 3.51
1317 1474 3.651480 ATTTCTTGCTCGCGTGCGC 62.651 57.895 25.83 17.63 39.59 6.09
1478 1639 3.007979 CGTATGTTGCATACGCCTCTA 57.992 47.619 22.74 0.00 40.42 2.43
1515 1676 9.959721 ATGTTCAGAAAACACTAACCATATACT 57.040 29.630 0.00 0.00 32.37 2.12
1536 1697 2.033141 GCAGCAGAACCAGGAGCA 59.967 61.111 0.00 0.00 0.00 4.26
1539 1700 1.072159 AGCAGAACCAGGAGCACAC 59.928 57.895 0.00 0.00 0.00 3.82
1542 1703 1.233019 CAGAACCAGGAGCACACTTG 58.767 55.000 0.00 0.00 0.00 3.16
1552 1715 4.957266 CACACTTGTGCATGCTGG 57.043 55.556 20.33 8.56 39.39 4.85
1556 1719 2.034432 CACACTTGTGCATGCTGGTAAA 59.966 45.455 20.33 5.21 39.39 2.01
1563 1726 3.379057 TGTGCATGCTGGTAAATCTGATG 59.621 43.478 20.33 0.00 0.00 3.07
1564 1727 2.953648 TGCATGCTGGTAAATCTGATGG 59.046 45.455 20.33 0.00 0.00 3.51
1571 1734 5.163513 GCTGGTAAATCTGATGGTTGTTTG 58.836 41.667 0.00 0.00 0.00 2.93
1574 1738 4.021544 GGTAAATCTGATGGTTGTTTGCCA 60.022 41.667 0.00 0.00 40.68 4.92
1576 1740 5.999205 AAATCTGATGGTTGTTTGCCATA 57.001 34.783 0.00 0.00 45.87 2.74
1578 1742 4.987408 TCTGATGGTTGTTTGCCATATG 57.013 40.909 0.00 0.00 45.87 1.78
1579 1743 4.343231 TCTGATGGTTGTTTGCCATATGT 58.657 39.130 1.24 0.00 45.87 2.29
1580 1744 4.158209 TCTGATGGTTGTTTGCCATATGTG 59.842 41.667 1.24 0.00 45.87 3.21
1581 1745 3.831333 TGATGGTTGTTTGCCATATGTGT 59.169 39.130 1.24 0.00 45.87 3.72
1627 1791 2.669569 GCAAGCGAGGTCAAGGCA 60.670 61.111 0.00 0.00 0.00 4.75
1633 1797 2.586792 GAGGTCAAGGCAGCCGAT 59.413 61.111 5.55 0.00 0.00 4.18
1639 1803 1.112916 TCAAGGCAGCCGATATCCGA 61.113 55.000 5.55 0.00 41.76 4.55
1702 1866 0.614697 TCATCCTCACCGCCTTCTCA 60.615 55.000 0.00 0.00 0.00 3.27
1731 1895 0.395311 ATTGAGGCCATCAGGTGCTG 60.395 55.000 5.01 0.00 39.68 4.41
1734 1898 2.441532 GGCCATCAGGTGCTGCAT 60.442 61.111 5.27 0.00 37.19 3.96
1744 1908 4.191544 TCAGGTGCTGCATACTTTACATC 58.808 43.478 5.27 0.00 0.00 3.06
1746 1910 3.200825 AGGTGCTGCATACTTTACATCCT 59.799 43.478 5.27 0.00 0.00 3.24
1754 1918 7.377766 TGCATACTTTACATCCTGTTTCTTC 57.622 36.000 0.00 0.00 0.00 2.87
1755 1919 7.168219 TGCATACTTTACATCCTGTTTCTTCT 58.832 34.615 0.00 0.00 0.00 2.85
1756 1920 7.665559 TGCATACTTTACATCCTGTTTCTTCTT 59.334 33.333 0.00 0.00 0.00 2.52
1757 1921 7.965107 GCATACTTTACATCCTGTTTCTTCTTG 59.035 37.037 0.00 0.00 0.00 3.02
1758 1922 9.219603 CATACTTTACATCCTGTTTCTTCTTGA 57.780 33.333 0.00 0.00 0.00 3.02
1759 1923 9.965902 ATACTTTACATCCTGTTTCTTCTTGAT 57.034 29.630 0.00 0.00 0.00 2.57
1760 1924 8.697507 ACTTTACATCCTGTTTCTTCTTGATT 57.302 30.769 0.00 0.00 0.00 2.57
1761 1925 9.793259 ACTTTACATCCTGTTTCTTCTTGATTA 57.207 29.630 0.00 0.00 0.00 1.75
1780 1944 9.793252 CTTGATTAACATAAGTTGAATCCAAGG 57.207 33.333 0.00 0.00 38.69 3.61
1786 1950 5.183140 ACATAAGTTGAATCCAAGGGAAACG 59.817 40.000 0.00 0.00 34.34 3.60
1787 1951 3.223674 AGTTGAATCCAAGGGAAACGT 57.776 42.857 0.00 0.00 34.34 3.99
1789 1953 2.621526 GTTGAATCCAAGGGAAACGTGT 59.378 45.455 0.00 0.00 34.34 4.49
1802 1966 3.493503 GGAAACGTGTATATGCACTAGCC 59.506 47.826 19.81 12.40 41.13 3.93
1806 1970 2.767505 GTGTATATGCACTAGCCACCC 58.232 52.381 15.83 0.00 41.13 4.61
1807 1971 1.343142 TGTATATGCACTAGCCACCCG 59.657 52.381 0.00 0.00 41.13 5.28
1808 1972 1.616865 GTATATGCACTAGCCACCCGA 59.383 52.381 0.00 0.00 41.13 5.14
1810 1974 1.682451 TATGCACTAGCCACCCGACC 61.682 60.000 0.00 0.00 41.13 4.79
1811 1975 4.468689 GCACTAGCCACCCGACCC 62.469 72.222 0.00 0.00 33.58 4.46
1812 1976 4.143333 CACTAGCCACCCGACCCG 62.143 72.222 0.00 0.00 0.00 5.28
1813 1977 4.371417 ACTAGCCACCCGACCCGA 62.371 66.667 0.00 0.00 0.00 5.14
1814 1978 3.834799 CTAGCCACCCGACCCGAC 61.835 72.222 0.00 0.00 0.00 4.79
1826 1990 2.079020 GACCCGACGTGGTGTCTCAA 62.079 60.000 12.00 0.00 45.87 3.02
1830 1994 0.790207 CGACGTGGTGTCTCAAATGG 59.210 55.000 0.00 0.00 45.87 3.16
1841 2005 7.759433 GTGGTGTCTCAAATGGGTTTAATTATG 59.241 37.037 0.00 0.00 0.00 1.90
1842 2006 7.671819 TGGTGTCTCAAATGGGTTTAATTATGA 59.328 33.333 0.00 0.00 0.00 2.15
1850 2014 9.357652 CAAATGGGTTTAATTATGACTCTTGTG 57.642 33.333 0.00 0.00 0.00 3.33
1856 2020 9.431887 GGTTTAATTATGACTCTTGTGTGACTA 57.568 33.333 0.00 0.00 0.00 2.59
1887 2059 3.374220 TTCTTGCATTGCAGTTCCAAG 57.626 42.857 11.76 5.47 40.61 3.61
1990 2162 5.353394 TGGTCAGTGTTCTGTACTTTTCT 57.647 39.130 0.00 0.00 41.91 2.52
1991 2163 5.116180 TGGTCAGTGTTCTGTACTTTTCTG 58.884 41.667 0.00 0.00 41.91 3.02
1992 2164 5.116882 GGTCAGTGTTCTGTACTTTTCTGT 58.883 41.667 0.00 0.00 41.91 3.41
1993 2165 5.234543 GGTCAGTGTTCTGTACTTTTCTGTC 59.765 44.000 0.00 0.00 41.91 3.51
1994 2166 5.810587 GTCAGTGTTCTGTACTTTTCTGTCA 59.189 40.000 0.00 0.00 41.91 3.58
1995 2167 6.480320 GTCAGTGTTCTGTACTTTTCTGTCAT 59.520 38.462 0.00 0.00 41.91 3.06
1996 2168 6.479990 TCAGTGTTCTGTACTTTTCTGTCATG 59.520 38.462 0.00 0.00 41.91 3.07
2000 2172 7.223971 GTGTTCTGTACTTTTCTGTCATGTGTA 59.776 37.037 0.00 0.00 0.00 2.90
2002 2174 8.774586 GTTCTGTACTTTTCTGTCATGTGTAAT 58.225 33.333 0.00 0.00 0.00 1.89
2004 2176 7.931407 TCTGTACTTTTCTGTCATGTGTAATGT 59.069 33.333 0.00 0.00 0.00 2.71
2027 2199 9.820725 ATGTGTTCATTATAATTGGTTCCAATG 57.179 29.630 16.42 6.14 36.84 2.82
2053 2225 7.334421 GCTTCAGTTTCATATGGACAACTTCTA 59.666 37.037 2.13 0.00 29.95 2.10
2063 2235 2.675348 GGACAACTTCTACTGCAGCATC 59.325 50.000 15.27 0.00 0.00 3.91
2066 2238 4.753233 ACAACTTCTACTGCAGCATCTAG 58.247 43.478 15.27 8.21 0.00 2.43
2067 2239 4.221703 ACAACTTCTACTGCAGCATCTAGT 59.778 41.667 15.27 8.38 0.00 2.57
2068 2240 5.419155 ACAACTTCTACTGCAGCATCTAGTA 59.581 40.000 15.27 0.99 0.00 1.82
2069 2241 5.766150 ACTTCTACTGCAGCATCTAGTAG 57.234 43.478 15.27 12.96 43.20 2.57
2070 2242 5.441500 ACTTCTACTGCAGCATCTAGTAGA 58.558 41.667 15.27 15.08 46.60 2.59
2072 2244 5.297569 TCTACTGCAGCATCTAGTAGAGA 57.702 43.478 15.27 0.95 44.65 3.10
2073 2245 5.685728 TCTACTGCAGCATCTAGTAGAGAA 58.314 41.667 15.27 0.00 44.65 2.87
2074 2246 6.122964 TCTACTGCAGCATCTAGTAGAGAAA 58.877 40.000 15.27 0.00 44.65 2.52
2075 2247 5.261209 ACTGCAGCATCTAGTAGAGAAAG 57.739 43.478 15.27 0.81 37.85 2.62
2076 2248 4.099266 ACTGCAGCATCTAGTAGAGAAAGG 59.901 45.833 15.27 0.00 37.85 3.11
2077 2249 4.026744 TGCAGCATCTAGTAGAGAAAGGT 58.973 43.478 5.98 0.00 37.85 3.50
2078 2250 4.098654 TGCAGCATCTAGTAGAGAAAGGTC 59.901 45.833 5.98 0.00 37.85 3.85
2096 2268 9.408648 AGAAAGGTCTTTATCTTTGAAGTCAAA 57.591 29.630 6.33 6.33 36.14 2.69
2101 2273 7.857885 GGTCTTTATCTTTGAAGTCAAACACAG 59.142 37.037 2.32 0.00 40.55 3.66
2107 2279 7.496529 TCTTTGAAGTCAAACACAGATTAGG 57.503 36.000 2.32 0.00 40.55 2.69
2108 2280 5.689383 TTGAAGTCAAACACAGATTAGGC 57.311 39.130 0.00 0.00 32.11 3.93
2143 2315 9.953565 TTATGGAATAGTAAAACAACTACTGCT 57.046 29.630 0.00 0.00 34.87 4.24
2146 2318 9.953565 TGGAATAGTAAAACAACTACTGCTATT 57.046 29.630 0.00 0.00 34.87 1.73
2151 2323 8.919777 AGTAAAACAACTACTGCTATTTCCTT 57.080 30.769 0.00 0.00 0.00 3.36
2152 2324 9.350951 AGTAAAACAACTACTGCTATTTCCTTT 57.649 29.630 0.00 0.00 0.00 3.11
2203 2376 4.153256 GGCACGTATTTTGTTAGTTTCCG 58.847 43.478 0.00 0.00 0.00 4.30
2204 2377 4.153256 GCACGTATTTTGTTAGTTTCCGG 58.847 43.478 0.00 0.00 0.00 5.14
2205 2378 4.083908 GCACGTATTTTGTTAGTTTCCGGA 60.084 41.667 0.00 0.00 0.00 5.14
2206 2379 5.376537 CACGTATTTTGTTAGTTTCCGGAC 58.623 41.667 1.83 0.00 0.00 4.79
2207 2380 5.050227 CACGTATTTTGTTAGTTTCCGGACA 60.050 40.000 1.83 0.00 0.00 4.02
2208 2381 5.050159 ACGTATTTTGTTAGTTTCCGGACAC 60.050 40.000 13.01 13.01 0.00 3.67
2209 2382 5.050227 CGTATTTTGTTAGTTTCCGGACACA 60.050 40.000 22.24 9.18 0.00 3.72
2210 2383 5.838531 ATTTTGTTAGTTTCCGGACACAA 57.161 34.783 22.24 14.16 0.00 3.33
2211 2384 5.640189 TTTTGTTAGTTTCCGGACACAAA 57.360 34.783 22.24 18.41 33.44 2.83
2212 2385 5.838531 TTTGTTAGTTTCCGGACACAAAT 57.161 34.783 22.24 7.99 31.00 2.32
2213 2386 5.838531 TTGTTAGTTTCCGGACACAAATT 57.161 34.783 22.24 5.25 0.00 1.82
2214 2387 5.427036 TGTTAGTTTCCGGACACAAATTC 57.573 39.130 22.24 8.54 0.00 2.17
2215 2388 4.882427 TGTTAGTTTCCGGACACAAATTCA 59.118 37.500 22.24 10.74 0.00 2.57
2216 2389 5.357314 TGTTAGTTTCCGGACACAAATTCAA 59.643 36.000 22.24 0.00 0.00 2.69
2217 2390 6.039941 TGTTAGTTTCCGGACACAAATTCAAT 59.960 34.615 22.24 2.04 0.00 2.57
2218 2391 5.121221 AGTTTCCGGACACAAATTCAATC 57.879 39.130 22.24 0.00 0.00 2.67
2219 2392 4.582656 AGTTTCCGGACACAAATTCAATCA 59.417 37.500 22.24 0.00 0.00 2.57
2220 2393 4.764679 TTCCGGACACAAATTCAATCAG 57.235 40.909 1.83 0.00 0.00 2.90
2221 2394 2.487762 TCCGGACACAAATTCAATCAGC 59.512 45.455 0.00 0.00 0.00 4.26
2222 2395 2.228582 CCGGACACAAATTCAATCAGCA 59.771 45.455 0.00 0.00 0.00 4.41
2223 2396 3.119388 CCGGACACAAATTCAATCAGCAT 60.119 43.478 0.00 0.00 0.00 3.79
2224 2397 4.096231 CCGGACACAAATTCAATCAGCATA 59.904 41.667 0.00 0.00 0.00 3.14
2225 2398 5.268544 CGGACACAAATTCAATCAGCATAG 58.731 41.667 0.00 0.00 0.00 2.23
2226 2399 5.163723 CGGACACAAATTCAATCAGCATAGT 60.164 40.000 0.00 0.00 0.00 2.12
2227 2400 6.261118 GGACACAAATTCAATCAGCATAGTC 58.739 40.000 0.00 0.00 0.00 2.59
2228 2401 6.127925 GGACACAAATTCAATCAGCATAGTCA 60.128 38.462 0.00 0.00 0.00 3.41
2229 2402 6.849502 ACACAAATTCAATCAGCATAGTCAG 58.150 36.000 0.00 0.00 0.00 3.51
2230 2403 5.742453 CACAAATTCAATCAGCATAGTCAGC 59.258 40.000 0.00 0.00 0.00 4.26
2231 2404 5.651139 ACAAATTCAATCAGCATAGTCAGCT 59.349 36.000 0.00 0.00 44.62 4.24
2232 2405 6.152323 ACAAATTCAATCAGCATAGTCAGCTT 59.848 34.615 0.00 0.00 41.14 3.74
2233 2406 6.770746 AATTCAATCAGCATAGTCAGCTTT 57.229 33.333 0.00 0.00 41.14 3.51
2234 2407 6.770746 ATTCAATCAGCATAGTCAGCTTTT 57.229 33.333 0.00 0.00 41.14 2.27
2235 2408 6.579666 TTCAATCAGCATAGTCAGCTTTTT 57.420 33.333 0.00 0.00 41.14 1.94
2236 2409 5.946298 TCAATCAGCATAGTCAGCTTTTTG 58.054 37.500 0.00 0.00 41.14 2.44
2237 2410 5.474532 TCAATCAGCATAGTCAGCTTTTTGT 59.525 36.000 0.00 0.00 41.14 2.83
2238 2411 5.972107 ATCAGCATAGTCAGCTTTTTGTT 57.028 34.783 0.00 0.00 41.14 2.83
2239 2412 5.362556 TCAGCATAGTCAGCTTTTTGTTC 57.637 39.130 0.00 0.00 41.14 3.18
2240 2413 4.083855 TCAGCATAGTCAGCTTTTTGTTCG 60.084 41.667 0.00 0.00 41.14 3.95
2241 2414 4.065088 AGCATAGTCAGCTTTTTGTTCGA 58.935 39.130 0.00 0.00 39.87 3.71
2242 2415 4.515191 AGCATAGTCAGCTTTTTGTTCGAA 59.485 37.500 0.00 0.00 39.87 3.71
2243 2416 5.008613 AGCATAGTCAGCTTTTTGTTCGAAA 59.991 36.000 0.00 0.00 39.87 3.46
2244 2417 5.115622 GCATAGTCAGCTTTTTGTTCGAAAC 59.884 40.000 0.00 0.00 0.00 2.78
2245 2418 4.965119 AGTCAGCTTTTTGTTCGAAACT 57.035 36.364 0.00 0.00 0.00 2.66
2246 2419 4.909894 AGTCAGCTTTTTGTTCGAAACTC 58.090 39.130 0.00 0.00 0.00 3.01
2247 2420 4.394920 AGTCAGCTTTTTGTTCGAAACTCA 59.605 37.500 0.00 0.00 0.00 3.41
2248 2421 5.066505 AGTCAGCTTTTTGTTCGAAACTCAT 59.933 36.000 0.00 0.00 0.00 2.90
2249 2422 5.172053 GTCAGCTTTTTGTTCGAAACTCATG 59.828 40.000 0.00 0.00 0.00 3.07
2250 2423 5.065859 TCAGCTTTTTGTTCGAAACTCATGA 59.934 36.000 0.00 0.00 0.00 3.07
2251 2424 5.916883 CAGCTTTTTGTTCGAAACTCATGAT 59.083 36.000 0.00 0.00 0.00 2.45
2252 2425 6.418819 CAGCTTTTTGTTCGAAACTCATGATT 59.581 34.615 0.00 0.00 0.00 2.57
2253 2426 6.980397 AGCTTTTTGTTCGAAACTCATGATTT 59.020 30.769 0.00 0.00 0.00 2.17
2254 2427 7.043192 AGCTTTTTGTTCGAAACTCATGATTTG 60.043 33.333 0.00 0.00 0.00 2.32
2255 2428 7.043458 GCTTTTTGTTCGAAACTCATGATTTGA 60.043 33.333 0.00 0.00 0.00 2.69
2256 2429 8.694975 TTTTTGTTCGAAACTCATGATTTGAA 57.305 26.923 0.00 7.39 32.78 2.69
2257 2430 7.678194 TTTGTTCGAAACTCATGATTTGAAC 57.322 32.000 23.75 23.75 43.65 3.18
2258 2431 6.618287 TGTTCGAAACTCATGATTTGAACT 57.382 33.333 27.27 5.82 43.69 3.01
2259 2432 7.026631 TGTTCGAAACTCATGATTTGAACTT 57.973 32.000 27.27 5.53 43.69 2.66
2260 2433 7.479980 TGTTCGAAACTCATGATTTGAACTTT 58.520 30.769 27.27 4.96 43.69 2.66
2261 2434 7.431960 TGTTCGAAACTCATGATTTGAACTTTG 59.568 33.333 27.27 8.60 43.69 2.77
2262 2435 6.437928 TCGAAACTCATGATTTGAACTTTGG 58.562 36.000 0.00 0.00 32.78 3.28
2377 2550 6.942532 ACACAAATAAGCTTTCTGACTTGA 57.057 33.333 3.20 0.00 0.00 3.02
2399 2572 8.472007 TTGATGGAAAGTAAAACAACCAGTAT 57.528 30.769 0.00 0.00 0.00 2.12
2446 2620 8.077991 TGATCTTTGACTTCAAGCACAAATTAG 58.922 33.333 9.72 1.67 37.15 1.73
2449 2623 5.362556 TGACTTCAAGCACAAATTAGCTC 57.637 39.130 0.00 0.00 40.90 4.09
2511 2767 5.902613 TTGGCTTATGAGTTGATCTTTGG 57.097 39.130 0.00 0.00 0.00 3.28
2641 3316 8.740123 TGACTTGATGGAAAGTAAAACAACTA 57.260 30.769 0.00 0.00 40.48 2.24
2678 3353 6.046885 GCTTATGAGCTGATCTTTGACTTC 57.953 41.667 1.49 0.00 45.65 3.01
2690 3365 6.919662 TGATCTTTGACTTCAAGCACAAATTC 59.080 34.615 9.72 10.14 37.15 2.17
2693 3368 1.971962 GACTTCAAGCACAAATTCGCG 59.028 47.619 0.00 0.00 0.00 5.87
2779 3454 6.373774 CACAGATTTTCTTAGCTTCTGGACAT 59.626 38.462 12.64 0.00 38.46 3.06
2817 3492 3.806316 ACATGTAAAGCTTTTCGTCCG 57.194 42.857 18.47 5.51 0.00 4.79
2988 3664 2.096496 GCATGTTAGCAGTGCAAGTAGG 59.904 50.000 19.20 3.88 38.68 3.18
3010 3686 3.392882 CAGGCAGAATTGGTTTTGTTCC 58.607 45.455 0.00 0.00 0.00 3.62
3012 3688 1.792367 GCAGAATTGGTTTTGTTCCGC 59.208 47.619 0.00 0.00 0.00 5.54
3035 3711 9.152595 CCGCTTCTCTTTTCTAGTAACTTAAAT 57.847 33.333 0.00 0.00 0.00 1.40
3093 3769 5.163923 GCCTTTTGAATATGCTGAAAACTGC 60.164 40.000 0.00 0.00 0.00 4.40
3103 3779 0.106769 TGAAAACTGCCAGCCACTGA 60.107 50.000 0.00 0.00 32.44 3.41
3108 3784 1.002990 CTGCCAGCCACTGATGTCA 60.003 57.895 0.00 0.00 32.44 3.58
3111 3787 1.023513 GCCAGCCACTGATGTCACTC 61.024 60.000 0.00 0.00 32.44 3.51
3112 3788 0.322648 CCAGCCACTGATGTCACTCA 59.677 55.000 0.00 0.00 32.44 3.41
3117 3884 1.620323 CCACTGATGTCACTCACCTGA 59.380 52.381 0.00 0.00 0.00 3.86
3141 3908 5.707298 AGGATCAATGTTTCAGTGTCGAATT 59.293 36.000 0.00 0.00 31.07 2.17
3145 3912 7.117241 TCAATGTTTCAGTGTCGAATTCTAC 57.883 36.000 3.52 3.36 31.07 2.59
3162 3943 4.335082 TCTACGATGAACAAATTTGCCG 57.665 40.909 18.12 14.73 0.00 5.69
3178 3959 0.459078 GCCGTAGACCTACTTGACCC 59.541 60.000 5.74 0.00 34.04 4.46
3180 3961 2.454538 CCGTAGACCTACTTGACCCTT 58.545 52.381 5.74 0.00 34.04 3.95
3194 3975 3.239449 TGACCCTTCTCTGCACTCTTAA 58.761 45.455 0.00 0.00 0.00 1.85
3213 3994 0.458543 ATGCAGGTGATGTCGTCGTC 60.459 55.000 0.00 0.00 0.00 4.20
3304 4085 0.178929 ACTCCCTTTCGAGACCCAGT 60.179 55.000 0.00 0.00 33.83 4.00
3321 4102 0.179029 AGTTGCAGTAACCACCGCTT 60.179 50.000 0.00 0.00 40.24 4.68
3322 4103 1.071071 AGTTGCAGTAACCACCGCTTA 59.929 47.619 0.00 0.00 40.24 3.09
3323 4104 1.196127 GTTGCAGTAACCACCGCTTAC 59.804 52.381 0.00 0.00 33.01 2.34
3324 4105 0.393448 TGCAGTAACCACCGCTTACA 59.607 50.000 0.00 0.00 0.00 2.41
3325 4106 1.002659 TGCAGTAACCACCGCTTACAT 59.997 47.619 0.00 0.00 0.00 2.29
3326 4107 2.081462 GCAGTAACCACCGCTTACATT 58.919 47.619 0.00 0.00 0.00 2.71
3327 4108 2.159572 GCAGTAACCACCGCTTACATTG 60.160 50.000 0.00 0.00 0.00 2.82
3328 4109 2.081462 AGTAACCACCGCTTACATTGC 58.919 47.619 0.00 0.00 0.00 3.56
3334 4115 2.223340 CCACCGCTTACATTGCATCTTC 60.223 50.000 0.00 0.00 0.00 2.87
3338 4119 2.713011 GCTTACATTGCATCTTCGCAG 58.287 47.619 0.00 0.00 44.14 5.18
3340 4121 3.786818 GCTTACATTGCATCTTCGCAGTC 60.787 47.826 0.00 0.00 44.14 3.51
3356 4137 1.006571 GTCGAGCCAAACGAGGACA 60.007 57.895 0.00 0.00 40.37 4.02
3358 4139 0.108804 TCGAGCCAAACGAGGACATC 60.109 55.000 0.00 0.00 34.85 3.06
3359 4140 0.389817 CGAGCCAAACGAGGACATCA 60.390 55.000 0.00 0.00 0.00 3.07
3360 4141 1.740380 CGAGCCAAACGAGGACATCAT 60.740 52.381 0.00 0.00 0.00 2.45
3361 4142 2.359900 GAGCCAAACGAGGACATCATT 58.640 47.619 0.00 0.00 0.00 2.57
3362 4143 2.352960 GAGCCAAACGAGGACATCATTC 59.647 50.000 0.00 0.00 0.00 2.67
3363 4144 2.083774 GCCAAACGAGGACATCATTCA 58.916 47.619 0.00 0.00 0.00 2.57
3364 4145 2.159517 GCCAAACGAGGACATCATTCAC 60.160 50.000 0.00 0.00 0.00 3.18
3365 4146 3.338249 CCAAACGAGGACATCATTCACT 58.662 45.455 0.00 0.00 0.00 3.41
3366 4147 3.753272 CCAAACGAGGACATCATTCACTT 59.247 43.478 0.00 0.00 0.00 3.16
3367 4148 4.142816 CCAAACGAGGACATCATTCACTTC 60.143 45.833 0.00 0.00 0.00 3.01
3369 4150 4.478206 ACGAGGACATCATTCACTTCAT 57.522 40.909 0.00 0.00 0.00 2.57
3370 4151 4.437239 ACGAGGACATCATTCACTTCATC 58.563 43.478 0.00 0.00 0.00 2.92
3371 4152 3.488678 CGAGGACATCATTCACTTCATCG 59.511 47.826 0.00 0.00 34.67 3.84
3372 4153 3.201290 AGGACATCATTCACTTCATCGC 58.799 45.455 0.00 0.00 0.00 4.58
3373 4154 2.289002 GGACATCATTCACTTCATCGCC 59.711 50.000 0.00 0.00 0.00 5.54
3374 4155 2.289002 GACATCATTCACTTCATCGCCC 59.711 50.000 0.00 0.00 0.00 6.13
3375 4156 1.605710 CATCATTCACTTCATCGCCCC 59.394 52.381 0.00 0.00 0.00 5.80
3376 4157 0.617935 TCATTCACTTCATCGCCCCA 59.382 50.000 0.00 0.00 0.00 4.96
3377 4158 1.004161 TCATTCACTTCATCGCCCCAA 59.996 47.619 0.00 0.00 0.00 4.12
3378 4159 1.133025 CATTCACTTCATCGCCCCAAC 59.867 52.381 0.00 0.00 0.00 3.77
3379 4160 0.608035 TTCACTTCATCGCCCCAACC 60.608 55.000 0.00 0.00 0.00 3.77
3380 4161 1.303236 CACTTCATCGCCCCAACCA 60.303 57.895 0.00 0.00 0.00 3.67
3381 4162 0.893270 CACTTCATCGCCCCAACCAA 60.893 55.000 0.00 0.00 0.00 3.67
3382 4163 0.893727 ACTTCATCGCCCCAACCAAC 60.894 55.000 0.00 0.00 0.00 3.77
3383 4164 0.893270 CTTCATCGCCCCAACCAACA 60.893 55.000 0.00 0.00 0.00 3.33
3384 4165 0.468214 TTCATCGCCCCAACCAACAA 60.468 50.000 0.00 0.00 0.00 2.83
3385 4166 1.175983 TCATCGCCCCAACCAACAAC 61.176 55.000 0.00 0.00 0.00 3.32
3386 4167 1.152652 ATCGCCCCAACCAACAACA 60.153 52.632 0.00 0.00 0.00 3.33
3387 4168 0.541764 ATCGCCCCAACCAACAACAT 60.542 50.000 0.00 0.00 0.00 2.71
3388 4169 0.757188 TCGCCCCAACCAACAACATT 60.757 50.000 0.00 0.00 0.00 2.71
3389 4170 0.319469 CGCCCCAACCAACAACATTC 60.319 55.000 0.00 0.00 0.00 2.67
3390 4171 0.034756 GCCCCAACCAACAACATTCC 59.965 55.000 0.00 0.00 0.00 3.01
3391 4172 1.418334 CCCCAACCAACAACATTCCA 58.582 50.000 0.00 0.00 0.00 3.53
3392 4173 1.977129 CCCCAACCAACAACATTCCAT 59.023 47.619 0.00 0.00 0.00 3.41
3393 4174 2.289569 CCCCAACCAACAACATTCCATG 60.290 50.000 0.00 0.00 0.00 3.66
3394 4175 2.632028 CCCAACCAACAACATTCCATGA 59.368 45.455 0.00 0.00 0.00 3.07
3395 4176 3.261390 CCCAACCAACAACATTCCATGAT 59.739 43.478 0.00 0.00 0.00 2.45
3396 4177 4.247258 CCAACCAACAACATTCCATGATG 58.753 43.478 0.00 0.00 38.79 3.07
3397 4178 3.598019 ACCAACAACATTCCATGATGC 57.402 42.857 0.00 0.00 36.63 3.91
3398 4179 3.167485 ACCAACAACATTCCATGATGCT 58.833 40.909 0.00 0.00 36.63 3.79
3399 4180 3.194116 ACCAACAACATTCCATGATGCTC 59.806 43.478 0.00 0.00 36.63 4.26
3400 4181 3.193903 CCAACAACATTCCATGATGCTCA 59.806 43.478 0.00 0.00 36.63 4.26
3401 4182 4.421058 CAACAACATTCCATGATGCTCAG 58.579 43.478 0.00 0.00 36.63 3.35
3402 4183 3.959293 ACAACATTCCATGATGCTCAGA 58.041 40.909 0.00 0.00 36.63 3.27
3403 4184 4.533815 ACAACATTCCATGATGCTCAGAT 58.466 39.130 0.00 0.00 36.63 2.90
3404 4185 4.338400 ACAACATTCCATGATGCTCAGATG 59.662 41.667 0.00 0.00 36.63 2.90
3405 4186 2.885266 ACATTCCATGATGCTCAGATGC 59.115 45.455 0.00 0.00 0.00 3.91
3406 4187 1.589803 TTCCATGATGCTCAGATGCG 58.410 50.000 0.00 0.00 35.36 4.73
3407 4188 0.250166 TCCATGATGCTCAGATGCGG 60.250 55.000 0.00 0.00 35.36 5.69
3408 4189 0.250166 CCATGATGCTCAGATGCGGA 60.250 55.000 0.00 0.00 35.36 5.54
3409 4190 1.149148 CATGATGCTCAGATGCGGAG 58.851 55.000 0.00 0.00 35.36 4.63
3410 4191 1.046204 ATGATGCTCAGATGCGGAGA 58.954 50.000 0.00 0.00 34.24 3.71
3411 4192 0.388294 TGATGCTCAGATGCGGAGAG 59.612 55.000 0.00 0.00 34.24 3.20
3461 4247 0.321387 CACAGCTGGACAGTGATGCT 60.321 55.000 19.93 0.00 37.98 3.79
3554 4340 4.640201 ACCATGTGTATCATTGTAGCAACC 59.360 41.667 0.00 0.00 34.09 3.77
3642 4436 5.531634 TGAATTCACAGTGCTGGAAATTTC 58.468 37.500 9.83 9.83 32.64 2.17
3665 4465 3.331478 AGTTCTGATCTTGTCTGCTGG 57.669 47.619 0.00 0.00 0.00 4.85
3670 4470 1.558294 TGATCTTGTCTGCTGGCATCT 59.442 47.619 0.00 0.00 0.00 2.90
3719 4520 4.555360 CGACGTTGTCTGAACTATTCTGAG 59.445 45.833 0.00 0.00 38.14 3.35
3720 4521 5.455056 ACGTTGTCTGAACTATTCTGAGT 57.545 39.130 0.00 0.00 38.14 3.41
3721 4522 5.844004 ACGTTGTCTGAACTATTCTGAGTT 58.156 37.500 0.00 0.00 42.42 3.01
3786 4591 5.986135 ACTGTACTAGCAAAAGACAGTTGAG 59.014 40.000 0.26 0.00 46.50 3.02
3787 4592 6.156748 TGTACTAGCAAAAGACAGTTGAGA 57.843 37.500 0.00 0.00 0.00 3.27
3788 4593 5.983720 TGTACTAGCAAAAGACAGTTGAGAC 59.016 40.000 0.00 0.00 0.00 3.36
3789 4594 5.023533 ACTAGCAAAAGACAGTTGAGACA 57.976 39.130 0.00 0.00 0.00 3.41
3791 4596 3.878778 AGCAAAAGACAGTTGAGACACT 58.121 40.909 0.00 0.00 0.00 3.55
3914 4756 3.159347 GGCGGGGAAGGATACGGT 61.159 66.667 0.00 0.00 46.39 4.83
4160 5005 4.452733 CTCCCCTTCACCGTCGCC 62.453 72.222 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.787532 GAATGATAGCAAAACAATAACTAGCAA 57.212 29.630 0.00 0.00 33.47 3.91
18 19 8.902806 TGGGAATGATAGCAAAACAATAACTAG 58.097 33.333 0.00 0.00 0.00 2.57
23 24 7.344093 TCCAATGGGAATGATAGCAAAACAATA 59.656 33.333 0.00 0.00 41.32 1.90
40 41 1.892474 CTTCGCCTTTTTCCAATGGGA 59.108 47.619 0.00 0.00 43.03 4.37
41 42 1.892474 TCTTCGCCTTTTTCCAATGGG 59.108 47.619 0.00 0.00 0.00 4.00
42 43 2.094545 CCTCTTCGCCTTTTTCCAATGG 60.095 50.000 0.00 0.00 0.00 3.16
43 44 2.558359 ACCTCTTCGCCTTTTTCCAATG 59.442 45.455 0.00 0.00 0.00 2.82
44 45 2.876581 ACCTCTTCGCCTTTTTCCAAT 58.123 42.857 0.00 0.00 0.00 3.16
45 46 2.358322 ACCTCTTCGCCTTTTTCCAA 57.642 45.000 0.00 0.00 0.00 3.53
46 47 2.635915 TCTACCTCTTCGCCTTTTTCCA 59.364 45.455 0.00 0.00 0.00 3.53
47 48 3.329929 TCTACCTCTTCGCCTTTTTCC 57.670 47.619 0.00 0.00 0.00 3.13
48 49 3.125487 GCTTCTACCTCTTCGCCTTTTTC 59.875 47.826 0.00 0.00 0.00 2.29
49 50 3.075148 GCTTCTACCTCTTCGCCTTTTT 58.925 45.455 0.00 0.00 0.00 1.94
50 51 2.038557 TGCTTCTACCTCTTCGCCTTTT 59.961 45.455 0.00 0.00 0.00 2.27
51 52 1.623811 TGCTTCTACCTCTTCGCCTTT 59.376 47.619 0.00 0.00 0.00 3.11
52 53 1.267121 TGCTTCTACCTCTTCGCCTT 58.733 50.000 0.00 0.00 0.00 4.35
53 54 1.490574 ATGCTTCTACCTCTTCGCCT 58.509 50.000 0.00 0.00 0.00 5.52
54 55 2.205911 GAATGCTTCTACCTCTTCGCC 58.794 52.381 0.00 0.00 0.00 5.54
55 56 2.205911 GGAATGCTTCTACCTCTTCGC 58.794 52.381 0.00 0.00 0.00 4.70
56 57 2.168521 TGGGAATGCTTCTACCTCTTCG 59.831 50.000 0.00 0.00 0.00 3.79
57 58 3.914426 TGGGAATGCTTCTACCTCTTC 57.086 47.619 0.00 0.00 0.00 2.87
58 59 4.530875 CAATGGGAATGCTTCTACCTCTT 58.469 43.478 0.00 0.00 0.00 2.85
59 60 3.117738 CCAATGGGAATGCTTCTACCTCT 60.118 47.826 0.00 0.00 35.59 3.69
60 61 3.117888 TCCAATGGGAATGCTTCTACCTC 60.118 47.826 0.00 0.00 41.32 3.85
61 62 2.852449 TCCAATGGGAATGCTTCTACCT 59.148 45.455 0.00 0.00 41.32 3.08
62 63 3.297134 TCCAATGGGAATGCTTCTACC 57.703 47.619 0.00 0.00 41.32 3.18
136 140 0.680280 CAAGCCTCCTGCATGAGCTT 60.680 55.000 13.07 15.31 41.13 3.74
208 212 6.716173 GGCAATAGCTAAGTAGGAGTAGTAGT 59.284 42.308 0.00 0.00 41.70 2.73
209 213 6.151480 GGGCAATAGCTAAGTAGGAGTAGTAG 59.849 46.154 0.00 0.00 41.70 2.57
210 214 6.008960 GGGCAATAGCTAAGTAGGAGTAGTA 58.991 44.000 0.00 0.00 41.70 1.82
211 215 4.833938 GGGCAATAGCTAAGTAGGAGTAGT 59.166 45.833 0.00 0.00 41.70 2.73
213 217 5.076057 AGGGCAATAGCTAAGTAGGAGTA 57.924 43.478 0.00 0.00 41.70 2.59
214 218 3.898741 GAGGGCAATAGCTAAGTAGGAGT 59.101 47.826 0.00 0.00 41.70 3.85
215 219 3.898123 TGAGGGCAATAGCTAAGTAGGAG 59.102 47.826 0.00 0.00 41.70 3.69
216 220 3.923648 TGAGGGCAATAGCTAAGTAGGA 58.076 45.455 0.00 0.00 41.70 2.94
217 221 4.040952 ACATGAGGGCAATAGCTAAGTAGG 59.959 45.833 0.00 0.00 41.70 3.18
218 222 4.993584 CACATGAGGGCAATAGCTAAGTAG 59.006 45.833 0.00 0.00 41.70 2.57
219 223 4.202357 CCACATGAGGGCAATAGCTAAGTA 60.202 45.833 0.00 0.00 41.70 2.24
237 244 4.774124 CATAAGATGTCTCACACCCACAT 58.226 43.478 0.00 0.00 33.32 3.21
255 262 4.336993 GTGGTTTAATCACATCCGGCATAA 59.663 41.667 3.16 0.00 35.39 1.90
268 275 3.312697 GCATCCCTCTTCGTGGTTTAATC 59.687 47.826 0.00 0.00 0.00 1.75
331 338 9.491675 ACACATTATCATGAATTTTGAGCAAAA 57.508 25.926 10.43 10.43 38.06 2.44
369 377 3.748568 CAGTGGGACAGAAAGAAGTAAGC 59.251 47.826 0.00 0.00 41.80 3.09
370 378 4.962155 ACAGTGGGACAGAAAGAAGTAAG 58.038 43.478 0.00 0.00 41.80 2.34
373 381 3.933861 AACAGTGGGACAGAAAGAAGT 57.066 42.857 0.00 0.00 41.80 3.01
374 382 4.199310 TCAAACAGTGGGACAGAAAGAAG 58.801 43.478 0.00 0.00 41.80 2.85
375 383 4.229304 TCAAACAGTGGGACAGAAAGAA 57.771 40.909 0.00 0.00 41.80 2.52
376 384 3.924114 TCAAACAGTGGGACAGAAAGA 57.076 42.857 0.00 0.00 41.80 2.52
377 385 4.136796 TCATCAAACAGTGGGACAGAAAG 58.863 43.478 0.00 0.00 41.80 2.62
378 386 4.163441 TCATCAAACAGTGGGACAGAAA 57.837 40.909 0.00 0.00 41.80 2.52
381 391 4.261741 CCTTTTCATCAAACAGTGGGACAG 60.262 45.833 0.00 0.00 41.80 3.51
388 398 3.259123 GGCCATCCTTTTCATCAAACAGT 59.741 43.478 0.00 0.00 0.00 3.55
413 423 5.335740 GGCAAAATGAGAGATATGCATCAGG 60.336 44.000 0.19 0.00 35.57 3.86
414 424 5.240844 TGGCAAAATGAGAGATATGCATCAG 59.759 40.000 0.19 0.00 35.57 2.90
451 461 8.246180 AGCAAATGAATTACAGGTCTAACAATG 58.754 33.333 0.00 0.00 0.00 2.82
454 464 6.939730 TGAGCAAATGAATTACAGGTCTAACA 59.060 34.615 0.00 0.00 0.00 2.41
474 485 3.632643 TCACAGAAATATGGCTGAGCA 57.367 42.857 6.82 0.00 36.07 4.26
475 486 4.970662 TTTCACAGAAATATGGCTGAGC 57.029 40.909 10.97 0.00 36.07 4.26
476 487 8.341173 GTCTAATTTCACAGAAATATGGCTGAG 58.659 37.037 10.97 4.67 36.07 3.35
477 488 7.828717 TGTCTAATTTCACAGAAATATGGCTGA 59.171 33.333 10.97 0.00 36.07 4.26
478 489 7.988737 TGTCTAATTTCACAGAAATATGGCTG 58.011 34.615 5.50 4.10 38.10 4.85
508 519 4.393062 AGTCAAACATTGTGGTCGATGATC 59.607 41.667 0.00 0.00 38.46 2.92
575 586 9.125026 AGAAATTACAGTCTTTGACTTCATTGT 57.875 29.630 0.00 0.00 41.37 2.71
576 587 9.956720 AAGAAATTACAGTCTTTGACTTCATTG 57.043 29.630 0.00 0.00 41.37 2.82
600 611 8.192774 TCCATGCTTCAGCTAAATTTTCATAAG 58.807 33.333 0.00 0.00 42.66 1.73
611 624 0.613260 ACCGTCCATGCTTCAGCTAA 59.387 50.000 0.00 0.00 42.66 3.09
627 640 2.283351 GTGGCAGCTAATACGTTTACCG 59.717 50.000 0.00 0.00 44.03 4.02
629 642 4.932268 TTGTGGCAGCTAATACGTTTAC 57.068 40.909 0.00 0.00 0.00 2.01
635 676 7.389053 AGCTCTATATTTTGTGGCAGCTAATAC 59.611 37.037 0.00 0.00 34.21 1.89
636 677 7.453393 AGCTCTATATTTTGTGGCAGCTAATA 58.547 34.615 0.00 0.00 34.21 0.98
643 684 7.394359 AGAAGAAAAGCTCTATATTTTGTGGCA 59.606 33.333 0.00 0.00 32.46 4.92
660 701 7.278424 TGCTTTTGGTTTTCATGAGAAGAAAAG 59.722 33.333 23.37 23.37 43.34 2.27
664 705 5.593909 TCTGCTTTTGGTTTTCATGAGAAGA 59.406 36.000 0.00 0.00 34.71 2.87
665 706 5.689068 GTCTGCTTTTGGTTTTCATGAGAAG 59.311 40.000 0.00 0.00 34.71 2.85
668 709 4.935702 TGTCTGCTTTTGGTTTTCATGAG 58.064 39.130 0.00 0.00 0.00 2.90
683 724 9.252962 CTTCAAAATAAAATTTGTCTGTCTGCT 57.747 29.630 0.00 0.00 40.40 4.24
697 738 9.352784 CTGTGTGTGTTTCTCTTCAAAATAAAA 57.647 29.630 0.00 0.00 0.00 1.52
703 744 4.009675 AGCTGTGTGTGTTTCTCTTCAAA 58.990 39.130 0.00 0.00 0.00 2.69
704 745 3.609853 AGCTGTGTGTGTTTCTCTTCAA 58.390 40.909 0.00 0.00 0.00 2.69
705 746 3.198068 GAGCTGTGTGTGTTTCTCTTCA 58.802 45.455 0.00 0.00 0.00 3.02
715 756 0.816825 AGCCAGTTGAGCTGTGTGTG 60.817 55.000 0.00 0.00 43.55 3.82
725 766 3.741075 CGAATATGCCTACAGCCAGTTGA 60.741 47.826 0.00 0.00 42.71 3.18
726 767 2.545526 CGAATATGCCTACAGCCAGTTG 59.454 50.000 0.00 0.00 42.71 3.16
728 769 2.039418 TCGAATATGCCTACAGCCAGT 58.961 47.619 0.00 0.00 42.71 4.00
729 770 2.224042 TGTCGAATATGCCTACAGCCAG 60.224 50.000 0.00 0.00 42.71 4.85
731 772 2.135933 GTGTCGAATATGCCTACAGCC 58.864 52.381 0.00 0.00 42.71 4.85
732 773 2.797156 CTGTGTCGAATATGCCTACAGC 59.203 50.000 0.00 0.00 44.14 4.40
734 775 3.951680 TCTCTGTGTCGAATATGCCTACA 59.048 43.478 0.00 0.00 0.00 2.74
747 873 0.723981 GAATGCGCCTTCTCTGTGTC 59.276 55.000 16.94 0.00 0.00 3.67
803 929 2.159310 TGTTTGTTTCAGCGGTCCAAAG 60.159 45.455 0.00 0.00 0.00 2.77
819 947 2.032979 GGCTCGCCATTTTGTTTGTTTG 60.033 45.455 2.41 0.00 35.81 2.93
865 995 0.709992 AGGGGATAGGCCAGCAAAAA 59.290 50.000 5.01 0.00 38.95 1.94
867 997 0.709992 AAAGGGGATAGGCCAGCAAA 59.290 50.000 5.01 0.00 38.95 3.68
868 998 0.258774 GAAAGGGGATAGGCCAGCAA 59.741 55.000 5.01 0.00 38.95 3.91
892 1028 2.128035 GACGAACCACACTGACTGAAG 58.872 52.381 0.00 0.00 0.00 3.02
893 1029 1.202486 GGACGAACCACACTGACTGAA 60.202 52.381 0.00 0.00 38.79 3.02
903 1039 2.541556 GAGATAAGCAGGACGAACCAC 58.458 52.381 0.00 0.00 42.04 4.16
904 1040 1.480954 GGAGATAAGCAGGACGAACCA 59.519 52.381 0.00 0.00 42.04 3.67
905 1041 1.757699 AGGAGATAAGCAGGACGAACC 59.242 52.381 0.00 0.00 39.35 3.62
959 1095 2.224159 GGGAGGGAGGTTGCAGTGA 61.224 63.158 0.00 0.00 0.00 3.41
1188 1341 1.821216 CACCACCCACCACATTAGAC 58.179 55.000 0.00 0.00 0.00 2.59
1227 1384 4.193334 GGAAAATGGCGCGAGGGC 62.193 66.667 12.10 3.38 42.69 5.19
1228 1385 3.518068 GGGAAAATGGCGCGAGGG 61.518 66.667 12.10 0.00 0.00 4.30
1229 1386 1.666209 AATGGGAAAATGGCGCGAGG 61.666 55.000 12.10 0.00 0.00 4.63
1230 1387 0.173255 AAATGGGAAAATGGCGCGAG 59.827 50.000 12.10 0.00 0.00 5.03
1281 1438 6.874288 AGAAATGAAAACCAGAGTCAGAAG 57.126 37.500 0.00 0.00 0.00 2.85
1317 1474 3.717294 CCCTGTCCCGGGGTTCTG 61.717 72.222 23.50 14.72 44.75 3.02
1478 1639 5.584649 TGTTTTCTGAACATTTCTCGACTGT 59.415 36.000 0.00 0.00 0.00 3.55
1519 1680 2.033141 TGCTCCTGGTTCTGCTGC 59.967 61.111 0.00 0.00 0.00 5.25
1520 1681 1.071987 TGTGCTCCTGGTTCTGCTG 59.928 57.895 0.00 0.00 0.00 4.41
1536 1697 1.979855 TTACCAGCATGCACAAGTGT 58.020 45.000 21.98 9.43 31.97 3.55
1539 1700 3.441222 TCAGATTTACCAGCATGCACAAG 59.559 43.478 21.98 7.59 31.97 3.16
1542 1703 3.243301 CCATCAGATTTACCAGCATGCAC 60.243 47.826 21.98 0.67 31.97 4.57
1552 1715 5.132897 TGGCAAACAACCATCAGATTTAC 57.867 39.130 0.00 0.00 30.29 2.01
1556 1719 4.957954 ACATATGGCAAACAACCATCAGAT 59.042 37.500 7.80 0.00 44.85 2.90
1563 1726 4.626042 TGAAACACATATGGCAAACAACC 58.374 39.130 7.80 0.00 0.00 3.77
1564 1727 5.175491 CACTGAAACACATATGGCAAACAAC 59.825 40.000 7.80 0.00 0.00 3.32
1571 1734 2.566952 GCCACTGAAACACATATGGC 57.433 50.000 7.80 0.00 46.16 4.40
1574 1738 2.489938 ACGGCCACTGAAACACATAT 57.510 45.000 2.24 0.00 0.00 1.78
1576 1740 1.336755 GAAACGGCCACTGAAACACAT 59.663 47.619 2.24 0.00 0.00 3.21
1578 1742 1.002792 GAGAAACGGCCACTGAAACAC 60.003 52.381 2.24 0.00 0.00 3.32
1579 1743 1.134220 AGAGAAACGGCCACTGAAACA 60.134 47.619 2.24 0.00 0.00 2.83
1580 1744 1.264288 CAGAGAAACGGCCACTGAAAC 59.736 52.381 2.24 0.00 0.00 2.78
1581 1745 1.593196 CAGAGAAACGGCCACTGAAA 58.407 50.000 2.24 0.00 0.00 2.69
1627 1791 1.109920 ACAGCACTCGGATATCGGCT 61.110 55.000 5.43 2.66 39.77 5.52
1633 1797 1.170442 TCACGAACAGCACTCGGATA 58.830 50.000 6.98 0.00 40.64 2.59
1639 1803 1.956170 CGGCTTCACGAACAGCACT 60.956 57.895 0.00 0.00 37.81 4.40
1702 1866 0.966875 TGGCCTCAATCTGCGCATTT 60.967 50.000 12.24 5.03 0.00 2.32
1754 1918 9.793252 CCTTGGATTCAACTTATGTTAATCAAG 57.207 33.333 16.39 13.81 34.60 3.02
1755 1919 8.748412 CCCTTGGATTCAACTTATGTTAATCAA 58.252 33.333 16.39 9.21 34.60 2.57
1756 1920 8.112822 TCCCTTGGATTCAACTTATGTTAATCA 58.887 33.333 16.39 0.00 34.60 2.57
1757 1921 8.519799 TCCCTTGGATTCAACTTATGTTAATC 57.480 34.615 0.00 5.00 34.60 1.75
1758 1922 8.893563 TTCCCTTGGATTCAACTTATGTTAAT 57.106 30.769 0.00 0.00 34.60 1.40
1759 1923 8.581578 GTTTCCCTTGGATTCAACTTATGTTAA 58.418 33.333 0.00 0.00 34.60 2.01
1760 1924 7.094549 CGTTTCCCTTGGATTCAACTTATGTTA 60.095 37.037 0.00 0.00 34.60 2.41
1761 1925 6.294508 CGTTTCCCTTGGATTCAACTTATGTT 60.295 38.462 0.00 0.00 36.75 2.71
1768 1932 2.621526 ACACGTTTCCCTTGGATTCAAC 59.378 45.455 0.00 0.00 0.00 3.18
1771 1935 5.277828 GCATATACACGTTTCCCTTGGATTC 60.278 44.000 0.00 0.00 0.00 2.52
1774 1938 3.055021 TGCATATACACGTTTCCCTTGGA 60.055 43.478 0.00 0.00 0.00 3.53
1776 1940 3.938963 AGTGCATATACACGTTTCCCTTG 59.061 43.478 0.34 0.00 45.45 3.61
1780 1944 3.493503 GGCTAGTGCATATACACGTTTCC 59.506 47.826 0.34 0.00 45.45 3.13
1786 1950 2.767505 GGGTGGCTAGTGCATATACAC 58.232 52.381 0.00 0.00 41.91 2.90
1787 1951 1.343142 CGGGTGGCTAGTGCATATACA 59.657 52.381 0.00 0.00 41.91 2.29
1789 1953 1.616865 GTCGGGTGGCTAGTGCATATA 59.383 52.381 0.00 0.00 41.91 0.86
1812 1976 1.156736 CCCATTTGAGACACCACGTC 58.843 55.000 0.00 0.00 45.77 4.34
1813 1977 0.472471 ACCCATTTGAGACACCACGT 59.528 50.000 0.00 0.00 0.00 4.49
1814 1978 1.604604 AACCCATTTGAGACACCACG 58.395 50.000 0.00 0.00 0.00 4.94
1815 1979 5.722021 ATTAAACCCATTTGAGACACCAC 57.278 39.130 0.00 0.00 0.00 4.16
1816 1980 7.671819 TCATAATTAAACCCATTTGAGACACCA 59.328 33.333 0.00 0.00 0.00 4.17
1820 1984 9.178758 AGAGTCATAATTAAACCCATTTGAGAC 57.821 33.333 0.00 0.00 0.00 3.36
1826 1990 8.522830 CACACAAGAGTCATAATTAAACCCATT 58.477 33.333 0.00 0.00 0.00 3.16
1830 1994 8.324163 AGTCACACAAGAGTCATAATTAAACC 57.676 34.615 0.00 0.00 0.00 3.27
1857 2021 9.734620 GAACTGCAATGCAAGAATACAAATATA 57.265 29.630 9.92 0.00 38.41 0.86
1858 2022 7.707893 GGAACTGCAATGCAAGAATACAAATAT 59.292 33.333 9.92 0.00 38.41 1.28
1859 2023 7.035004 GGAACTGCAATGCAAGAATACAAATA 58.965 34.615 9.92 0.00 38.41 1.40
1874 2046 4.260170 GTCTCTCATCTTGGAACTGCAAT 58.740 43.478 0.00 0.00 0.00 3.56
1887 2059 0.662970 GCTCGCCGATGTCTCTCATC 60.663 60.000 0.00 0.00 46.68 2.92
1902 2074 1.352882 CTCTGCTGAACTGCTGCTCG 61.353 60.000 0.00 0.00 41.53 5.03
2002 2174 7.763528 GCATTGGAACCAATTATAATGAACACA 59.236 33.333 15.33 0.00 43.32 3.72
2004 2176 8.076910 AGCATTGGAACCAATTATAATGAACA 57.923 30.769 15.33 0.00 43.32 3.18
2023 2195 6.198650 TGTCCATATGAAACTGAAGCATTG 57.801 37.500 3.65 0.00 0.00 2.82
2027 2199 5.886960 AGTTGTCCATATGAAACTGAAGC 57.113 39.130 3.65 0.00 31.82 3.86
2053 2225 4.099266 CCTTTCTCTACTAGATGCTGCAGT 59.901 45.833 16.64 2.81 33.05 4.40
2066 2238 9.713713 ACTTCAAAGATAAAGACCTTTCTCTAC 57.286 33.333 9.75 0.00 35.73 2.59
2067 2239 9.930693 GACTTCAAAGATAAAGACCTTTCTCTA 57.069 33.333 9.75 0.00 35.73 2.43
2068 2240 8.432805 TGACTTCAAAGATAAAGACCTTTCTCT 58.567 33.333 0.00 1.88 37.53 3.10
2069 2241 8.608844 TGACTTCAAAGATAAAGACCTTTCTC 57.391 34.615 0.00 0.00 34.23 2.87
2070 2242 8.980481 TTGACTTCAAAGATAAAGACCTTTCT 57.020 30.769 0.00 0.00 31.98 2.52
2071 2243 9.452065 GTTTGACTTCAAAGATAAAGACCTTTC 57.548 33.333 4.61 0.00 45.36 2.62
2072 2244 8.966868 TGTTTGACTTCAAAGATAAAGACCTTT 58.033 29.630 4.61 0.41 45.36 3.11
2073 2245 8.406297 GTGTTTGACTTCAAAGATAAAGACCTT 58.594 33.333 4.61 0.00 45.36 3.50
2074 2246 7.556275 TGTGTTTGACTTCAAAGATAAAGACCT 59.444 33.333 4.61 0.00 45.36 3.85
2075 2247 7.703328 TGTGTTTGACTTCAAAGATAAAGACC 58.297 34.615 4.61 0.00 45.36 3.85
2076 2248 8.612619 TCTGTGTTTGACTTCAAAGATAAAGAC 58.387 33.333 4.61 6.74 45.36 3.01
2077 2249 8.731275 TCTGTGTTTGACTTCAAAGATAAAGA 57.269 30.769 4.61 6.30 45.36 2.52
2078 2250 9.956720 AATCTGTGTTTGACTTCAAAGATAAAG 57.043 29.630 4.61 4.39 45.36 1.85
2096 2268 4.899352 AAGTCAGAAGCCTAATCTGTGT 57.101 40.909 3.72 0.00 43.77 3.72
2101 2273 9.213799 CTATTCCATAAAGTCAGAAGCCTAATC 57.786 37.037 0.00 0.00 0.00 1.75
2107 2279 9.989869 GTTTTACTATTCCATAAAGTCAGAAGC 57.010 33.333 0.00 0.00 0.00 3.86
2166 2339 1.996898 CGTGCCGTCAACTTATAAGCA 59.003 47.619 12.54 0.86 0.00 3.91
2167 2340 1.997606 ACGTGCCGTCAACTTATAAGC 59.002 47.619 12.54 0.00 33.69 3.09
2177 2350 3.391965 ACTAACAAAATACGTGCCGTCA 58.608 40.909 0.00 0.00 41.54 4.35
2180 2353 4.153256 GGAAACTAACAAAATACGTGCCG 58.847 43.478 0.00 0.00 0.00 5.69
2182 2355 4.083908 TCCGGAAACTAACAAAATACGTGC 60.084 41.667 0.00 0.00 0.00 5.34
2189 2362 5.640189 TTTGTGTCCGGAAACTAACAAAA 57.360 34.783 25.12 13.81 35.30 2.44
2193 2366 5.427036 TGAATTTGTGTCCGGAAACTAAC 57.573 39.130 25.12 13.23 0.00 2.34
2194 2367 6.263392 TGATTGAATTTGTGTCCGGAAACTAA 59.737 34.615 25.12 23.23 0.00 2.24
2195 2368 5.765677 TGATTGAATTTGTGTCCGGAAACTA 59.234 36.000 25.12 15.66 0.00 2.24
2196 2369 4.582656 TGATTGAATTTGTGTCCGGAAACT 59.417 37.500 25.12 5.04 0.00 2.66
2197 2370 4.865776 TGATTGAATTTGTGTCCGGAAAC 58.134 39.130 18.56 18.56 0.00 2.78
2198 2371 4.558496 GCTGATTGAATTTGTGTCCGGAAA 60.558 41.667 5.23 0.00 0.00 3.13
2199 2372 3.057596 GCTGATTGAATTTGTGTCCGGAA 60.058 43.478 5.23 0.00 0.00 4.30
2200 2373 2.487762 GCTGATTGAATTTGTGTCCGGA 59.512 45.455 0.00 0.00 0.00 5.14
2201 2374 2.228582 TGCTGATTGAATTTGTGTCCGG 59.771 45.455 0.00 0.00 0.00 5.14
2202 2375 3.557577 TGCTGATTGAATTTGTGTCCG 57.442 42.857 0.00 0.00 0.00 4.79
2203 2376 6.127925 TGACTATGCTGATTGAATTTGTGTCC 60.128 38.462 0.00 0.00 0.00 4.02
2204 2377 6.845302 TGACTATGCTGATTGAATTTGTGTC 58.155 36.000 0.00 0.00 0.00 3.67
2205 2378 6.624423 GCTGACTATGCTGATTGAATTTGTGT 60.624 38.462 0.00 0.00 0.00 3.72
2206 2379 5.742453 GCTGACTATGCTGATTGAATTTGTG 59.258 40.000 0.00 0.00 0.00 3.33
2207 2380 5.651139 AGCTGACTATGCTGATTGAATTTGT 59.349 36.000 0.00 0.00 39.56 2.83
2208 2381 6.132791 AGCTGACTATGCTGATTGAATTTG 57.867 37.500 0.00 0.00 39.56 2.32
2209 2382 6.770746 AAGCTGACTATGCTGATTGAATTT 57.229 33.333 0.00 0.00 41.03 1.82
2210 2383 6.770746 AAAGCTGACTATGCTGATTGAATT 57.229 33.333 0.00 0.00 41.03 2.17
2211 2384 6.770746 AAAAGCTGACTATGCTGATTGAAT 57.229 33.333 0.00 0.00 41.03 2.57
2212 2385 6.016024 ACAAAAAGCTGACTATGCTGATTGAA 60.016 34.615 15.55 0.00 41.03 2.69
2213 2386 5.474532 ACAAAAAGCTGACTATGCTGATTGA 59.525 36.000 15.55 0.00 41.03 2.57
2214 2387 5.706916 ACAAAAAGCTGACTATGCTGATTG 58.293 37.500 0.00 0.00 41.03 2.67
2215 2388 5.972107 ACAAAAAGCTGACTATGCTGATT 57.028 34.783 0.00 0.00 41.03 2.57
2216 2389 5.391310 CGAACAAAAAGCTGACTATGCTGAT 60.391 40.000 0.00 0.00 41.03 2.90
2217 2390 4.083855 CGAACAAAAAGCTGACTATGCTGA 60.084 41.667 0.00 0.00 41.03 4.26
2218 2391 4.083855 TCGAACAAAAAGCTGACTATGCTG 60.084 41.667 0.00 0.00 41.03 4.41
2219 2392 4.065088 TCGAACAAAAAGCTGACTATGCT 58.935 39.130 0.00 0.00 43.32 3.79
2220 2393 4.404507 TCGAACAAAAAGCTGACTATGC 57.595 40.909 0.00 0.00 0.00 3.14
2221 2394 6.430451 AGTTTCGAACAAAAAGCTGACTATG 58.570 36.000 0.00 0.00 0.00 2.23
2222 2395 6.260050 TGAGTTTCGAACAAAAAGCTGACTAT 59.740 34.615 0.00 0.00 0.00 2.12
2223 2396 5.583061 TGAGTTTCGAACAAAAAGCTGACTA 59.417 36.000 0.00 0.00 0.00 2.59
2224 2397 4.394920 TGAGTTTCGAACAAAAAGCTGACT 59.605 37.500 0.00 0.00 0.00 3.41
2225 2398 4.658071 TGAGTTTCGAACAAAAAGCTGAC 58.342 39.130 0.00 0.00 0.00 3.51
2226 2399 4.955925 TGAGTTTCGAACAAAAAGCTGA 57.044 36.364 0.00 0.00 0.00 4.26
2227 2400 5.273170 TCATGAGTTTCGAACAAAAAGCTG 58.727 37.500 0.00 0.00 0.00 4.24
2228 2401 5.499139 TCATGAGTTTCGAACAAAAAGCT 57.501 34.783 0.00 0.00 0.00 3.74
2229 2402 6.753897 AATCATGAGTTTCGAACAAAAAGC 57.246 33.333 0.09 0.00 0.00 3.51
2230 2403 8.338985 TCAAATCATGAGTTTCGAACAAAAAG 57.661 30.769 5.50 0.00 33.04 2.27
2231 2404 8.591312 GTTCAAATCATGAGTTTCGAACAAAAA 58.409 29.630 23.39 0.00 39.77 1.94
2232 2405 7.973388 AGTTCAAATCATGAGTTTCGAACAAAA 59.027 29.630 26.99 2.68 39.77 2.44
2233 2406 7.479980 AGTTCAAATCATGAGTTTCGAACAAA 58.520 30.769 26.99 7.05 39.77 2.83
2234 2407 7.026631 AGTTCAAATCATGAGTTTCGAACAA 57.973 32.000 26.99 7.19 39.77 2.83
2235 2408 6.618287 AGTTCAAATCATGAGTTTCGAACA 57.382 33.333 26.99 0.00 39.77 3.18
2236 2409 7.096477 CCAAAGTTCAAATCATGAGTTTCGAAC 60.096 37.037 21.94 21.94 39.77 3.95
2237 2410 6.917477 CCAAAGTTCAAATCATGAGTTTCGAA 59.083 34.615 5.50 5.19 39.77 3.71
2238 2411 6.262049 TCCAAAGTTCAAATCATGAGTTTCGA 59.738 34.615 5.50 0.00 39.77 3.71
2239 2412 6.437928 TCCAAAGTTCAAATCATGAGTTTCG 58.562 36.000 5.50 0.00 39.77 3.46
2240 2413 8.822652 AATCCAAAGTTCAAATCATGAGTTTC 57.177 30.769 5.50 0.46 39.77 2.78
2305 2478 7.766628 TCTCTACCCCTATACATAACACTCAT 58.233 38.462 0.00 0.00 0.00 2.90
2309 2482 7.289549 ACCTTTCTCTACCCCTATACATAACAC 59.710 40.741 0.00 0.00 0.00 3.32
2446 2620 3.936564 ACTTTCCATCAAGTCAGAGAGC 58.063 45.455 0.00 0.00 30.76 4.09
2449 2623 7.496529 TGTTTTACTTTCCATCAAGTCAGAG 57.503 36.000 0.00 0.00 38.07 3.35
2511 2767 4.155644 AGAGAGCTAATTTGTGCTTGAAGC 59.844 41.667 10.84 10.84 42.82 3.86
2678 3353 1.710249 CAGAACGCGAATTTGTGCTTG 59.290 47.619 15.93 0.00 0.00 4.01
2690 3365 1.428448 TTCCATCAAGTCAGAACGCG 58.572 50.000 3.53 3.53 0.00 6.01
2693 3368 4.326826 TCACCATTCCATCAAGTCAGAAC 58.673 43.478 0.00 0.00 0.00 3.01
2805 3480 2.234300 TGAGTTTCGGACGAAAAGCT 57.766 45.000 19.84 14.12 44.40 3.74
2978 3654 0.606401 TTCTGCCTGCCTACTTGCAC 60.606 55.000 0.00 0.00 36.04 4.57
2988 3664 2.531522 ACAAAACCAATTCTGCCTGC 57.468 45.000 0.00 0.00 0.00 4.85
3093 3769 0.322648 TGAGTGACATCAGTGGCTGG 59.677 55.000 0.00 0.00 33.19 4.85
3103 3779 2.825223 TGATCCTCAGGTGAGTGACAT 58.175 47.619 6.25 0.00 40.48 3.06
3108 3784 4.042062 TGAAACATTGATCCTCAGGTGAGT 59.958 41.667 6.25 0.00 40.48 3.41
3111 3787 4.155462 CACTGAAACATTGATCCTCAGGTG 59.845 45.833 0.00 0.00 38.25 4.00
3112 3788 4.202503 ACACTGAAACATTGATCCTCAGGT 60.203 41.667 0.00 0.00 38.25 4.00
3117 3884 4.271696 TCGACACTGAAACATTGATCCT 57.728 40.909 0.00 0.00 0.00 3.24
3118 3885 5.551760 ATTCGACACTGAAACATTGATCC 57.448 39.130 0.00 0.00 0.00 3.36
3128 3895 5.305139 TCATCGTAGAATTCGACACTGAA 57.695 39.130 17.35 3.71 43.58 3.02
3141 3908 3.749088 ACGGCAAATTTGTTCATCGTAGA 59.251 39.130 19.03 0.00 45.75 2.59
3145 3912 4.088648 GTCTACGGCAAATTTGTTCATCG 58.911 43.478 19.03 15.83 0.00 3.84
3162 3943 4.399934 CAGAGAAGGGTCAAGTAGGTCTAC 59.600 50.000 0.12 0.12 36.35 2.59
3194 3975 0.458543 GACGACGACATCACCTGCAT 60.459 55.000 0.00 0.00 0.00 3.96
3201 3982 6.327279 AGAAATATATGGACGACGACATCA 57.673 37.500 0.00 0.00 0.00 3.07
3213 3994 3.347216 CTGCGGGGGAAGAAATATATGG 58.653 50.000 0.00 0.00 0.00 2.74
3321 4102 1.926510 CGACTGCGAAGATGCAATGTA 59.073 47.619 0.00 0.00 45.74 2.29
3322 4103 0.723414 CGACTGCGAAGATGCAATGT 59.277 50.000 0.00 0.00 45.74 2.71
3323 4104 1.001624 TCGACTGCGAAGATGCAATG 58.998 50.000 0.00 0.00 45.74 2.82
3324 4105 3.441244 TCGACTGCGAAGATGCAAT 57.559 47.368 0.00 0.00 45.74 3.56
3325 4106 4.985845 TCGACTGCGAAGATGCAA 57.014 50.000 0.00 0.00 45.74 4.08
3334 4115 2.720758 CTCGTTTGGCTCGACTGCG 61.721 63.158 0.00 0.00 39.35 5.18
3338 4119 0.389948 ATGTCCTCGTTTGGCTCGAC 60.390 55.000 0.00 0.00 33.71 4.20
3340 4121 0.389817 TGATGTCCTCGTTTGGCTCG 60.390 55.000 0.00 0.00 0.00 5.03
3356 4137 1.212688 TGGGGCGATGAAGTGAATGAT 59.787 47.619 0.00 0.00 0.00 2.45
3358 4139 1.133025 GTTGGGGCGATGAAGTGAATG 59.867 52.381 0.00 0.00 0.00 2.67
3359 4140 1.463674 GTTGGGGCGATGAAGTGAAT 58.536 50.000 0.00 0.00 0.00 2.57
3360 4141 0.608035 GGTTGGGGCGATGAAGTGAA 60.608 55.000 0.00 0.00 0.00 3.18
3361 4142 1.002624 GGTTGGGGCGATGAAGTGA 60.003 57.895 0.00 0.00 0.00 3.41
3362 4143 0.893270 TTGGTTGGGGCGATGAAGTG 60.893 55.000 0.00 0.00 0.00 3.16
3363 4144 0.893727 GTTGGTTGGGGCGATGAAGT 60.894 55.000 0.00 0.00 0.00 3.01
3364 4145 0.893270 TGTTGGTTGGGGCGATGAAG 60.893 55.000 0.00 0.00 0.00 3.02
3365 4146 0.468214 TTGTTGGTTGGGGCGATGAA 60.468 50.000 0.00 0.00 0.00 2.57
3366 4147 1.151679 TTGTTGGTTGGGGCGATGA 59.848 52.632 0.00 0.00 0.00 2.92
3367 4148 1.288752 GTTGTTGGTTGGGGCGATG 59.711 57.895 0.00 0.00 0.00 3.84
3369 4150 0.757188 AATGTTGTTGGTTGGGGCGA 60.757 50.000 0.00 0.00 0.00 5.54
3370 4151 0.319469 GAATGTTGTTGGTTGGGGCG 60.319 55.000 0.00 0.00 0.00 6.13
3371 4152 0.034756 GGAATGTTGTTGGTTGGGGC 59.965 55.000 0.00 0.00 0.00 5.80
3372 4153 1.418334 TGGAATGTTGTTGGTTGGGG 58.582 50.000 0.00 0.00 0.00 4.96
3373 4154 2.632028 TCATGGAATGTTGTTGGTTGGG 59.368 45.455 0.00 0.00 46.80 4.12
3374 4155 4.247258 CATCATGGAATGTTGTTGGTTGG 58.753 43.478 0.00 0.00 46.80 3.77
3375 4156 3.680937 GCATCATGGAATGTTGTTGGTTG 59.319 43.478 0.00 0.00 46.80 3.77
3376 4157 3.579586 AGCATCATGGAATGTTGTTGGTT 59.420 39.130 0.00 0.00 46.80 3.67
3377 4158 3.167485 AGCATCATGGAATGTTGTTGGT 58.833 40.909 0.00 0.00 46.80 3.67
3378 4159 3.193903 TGAGCATCATGGAATGTTGTTGG 59.806 43.478 0.00 0.00 46.80 3.77
3379 4160 4.443913 TGAGCATCATGGAATGTTGTTG 57.556 40.909 0.00 0.00 46.80 3.33
3393 4174 3.198187 CTCTCCGCATCTGAGCATC 57.802 57.895 0.00 0.00 0.00 3.91
3397 4178 1.592131 GCAGCTCTCCGCATCTGAG 60.592 63.158 0.00 0.00 42.61 3.35
3398 4179 2.498248 GCAGCTCTCCGCATCTGA 59.502 61.111 0.00 0.00 42.61 3.27
3399 4180 2.588314 GGCAGCTCTCCGCATCTG 60.588 66.667 0.00 0.00 42.61 2.90
3400 4181 3.859414 GGGCAGCTCTCCGCATCT 61.859 66.667 0.00 0.00 42.61 2.90
3412 4193 3.243367 GCTATCTATCTATCTGCGGGCAG 60.243 52.174 14.36 14.36 44.86 4.85
3413 4194 2.690497 GCTATCTATCTATCTGCGGGCA 59.310 50.000 0.00 0.00 0.00 5.36
3414 4195 2.955660 AGCTATCTATCTATCTGCGGGC 59.044 50.000 0.00 0.00 0.00 6.13
3461 4247 2.110188 ACTTCAGGAGAGTAGTCACCCA 59.890 50.000 10.14 0.00 34.04 4.51
3554 4340 6.139435 TGTTAACATTGTTCAATAGTGCGTG 58.861 36.000 3.59 0.00 0.00 5.34
3642 4436 4.431809 CAGCAGACAAGATCAGAACTAGG 58.568 47.826 0.00 0.00 0.00 3.02
3649 4449 1.941294 GATGCCAGCAGACAAGATCAG 59.059 52.381 0.00 0.00 0.00 2.90
3665 4465 4.608948 ACAGTAGGCTGGTAATAGATGC 57.391 45.455 0.00 0.00 46.62 3.91
3670 4470 9.609346 GAAGAAAAATACAGTAGGCTGGTAATA 57.391 33.333 0.00 0.00 46.62 0.98
3723 4524 0.179094 GTGAACACCACTGACCGTCA 60.179 55.000 0.29 0.29 42.44 4.35
3724 4525 2.601562 GTGAACACCACTGACCGTC 58.398 57.895 0.00 0.00 42.44 4.79
3725 4526 4.848685 GTGAACACCACTGACCGT 57.151 55.556 0.00 0.00 42.44 4.83
3748 4549 6.040504 TGCTAGTACAGTTCAGAGTTGAGAAA 59.959 38.462 0.00 0.00 34.15 2.52
3753 4554 6.701841 TCTTTTGCTAGTACAGTTCAGAGTTG 59.298 38.462 0.00 0.00 0.00 3.16
3786 4591 6.041409 TCTGAATCTGAAGGATATCCAGTGTC 59.959 42.308 23.81 14.46 38.89 3.67
3787 4592 5.901853 TCTGAATCTGAAGGATATCCAGTGT 59.098 40.000 23.81 5.78 38.89 3.55
3788 4593 6.416631 TCTGAATCTGAAGGATATCCAGTG 57.583 41.667 23.81 10.50 38.89 3.66
3789 4594 8.176105 TCTATCTGAATCTGAAGGATATCCAGT 58.824 37.037 23.81 11.01 38.89 4.00
3791 4596 8.176105 ACTCTATCTGAATCTGAAGGATATCCA 58.824 37.037 23.81 2.66 38.89 3.41
3792 4597 8.469200 CACTCTATCTGAATCTGAAGGATATCC 58.531 40.741 14.41 14.41 33.71 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.