Multiple sequence alignment - TraesCS5D01G278600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G278600 chr5D 100.000 6511 0 0 1 6511 380839294 380845804 0.000000e+00 12024.0
1 TraesCS5D01G278600 chr5D 84.005 819 62 34 823 1614 394747162 394746386 0.000000e+00 723.0
2 TraesCS5D01G278600 chr5D 82.822 326 39 12 1038 1358 30832424 30832111 6.430000e-70 276.0
3 TraesCS5D01G278600 chr5D 85.232 237 11 8 818 1040 380296254 380296028 8.500000e-54 222.0
4 TraesCS5D01G278600 chr5D 85.915 142 7 4 830 971 30832780 30832652 8.800000e-29 139.0
5 TraesCS5D01G278600 chr5D 92.982 57 4 0 1615 1671 508111027 508111083 4.180000e-12 84.2
6 TraesCS5D01G278600 chr5B 92.707 2482 89 39 3395 5814 456980818 456983269 0.000000e+00 3496.0
7 TraesCS5D01G278600 chr5B 90.602 1330 53 30 429 1729 456977249 456978535 0.000000e+00 1698.0
8 TraesCS5D01G278600 chr5B 96.414 976 18 7 1792 2758 456978808 456979775 0.000000e+00 1592.0
9 TraesCS5D01G278600 chr5B 93.465 658 16 3 2752 3398 456979825 456980466 0.000000e+00 952.0
10 TraesCS5D01G278600 chr5B 82.798 436 38 11 1 400 456975364 456975798 8.030000e-94 355.0
11 TraesCS5D01G278600 chr5B 78.487 595 69 28 795 1369 167762114 167761559 1.050000e-87 335.0
12 TraesCS5D01G278600 chr5B 82.474 291 28 18 6238 6511 456983768 456984052 3.930000e-57 233.0
13 TraesCS5D01G278600 chr5B 94.595 148 7 1 5632 5779 457082860 457083006 1.830000e-55 228.0
14 TraesCS5D01G278600 chr5B 90.244 164 7 5 5472 5635 457081053 457081207 8.560000e-49 206.0
15 TraesCS5D01G278600 chr5B 88.889 162 12 3 5192 5348 457069221 457069381 1.850000e-45 195.0
16 TraesCS5D01G278600 chr5B 92.982 57 4 0 1615 1671 638841886 638841830 4.180000e-12 84.2
17 TraesCS5D01G278600 chr5A 92.247 1780 62 31 1 1729 481664237 481665991 0.000000e+00 2453.0
18 TraesCS5D01G278600 chr5A 95.802 1334 37 10 2752 4074 481667286 481668611 0.000000e+00 2135.0
19 TraesCS5D01G278600 chr5A 91.402 1605 46 24 4261 5813 481668724 481670288 0.000000e+00 2115.0
20 TraesCS5D01G278600 chr5A 95.816 980 24 7 1792 2758 481666261 481667236 0.000000e+00 1567.0
21 TraesCS5D01G278600 chr5A 79.581 573 58 32 1045 1608 580268296 580268818 8.030000e-94 355.0
22 TraesCS5D01G278600 chr5A 93.919 148 8 1 5632 5779 481845839 481845985 8.500000e-54 222.0
23 TraesCS5D01G278600 chr5A 96.552 116 4 0 4110 4225 481668610 481668725 6.660000e-45 193.0
24 TraesCS5D01G278600 chr5A 86.614 127 10 3 830 956 580267902 580268021 4.100000e-27 134.0
25 TraesCS5D01G278600 chr5A 92.857 84 6 0 6238 6321 481674184 481674267 8.870000e-24 122.0
26 TraesCS5D01G278600 chr5A 81.295 139 24 2 6237 6375 481848639 481848775 1.920000e-20 111.0
27 TraesCS5D01G278600 chr5A 91.667 72 6 0 5708 5779 481673631 481673702 4.150000e-17 100.0
28 TraesCS5D01G278600 chr5A 91.071 56 5 0 1615 1670 635772034 635772089 7.000000e-10 76.8
29 TraesCS5D01G278600 chr6A 83.532 838 67 33 803 1611 254934787 254935582 0.000000e+00 717.0
30 TraesCS5D01G278600 chr7B 96.059 406 13 1 3111 3516 427468490 427468892 0.000000e+00 658.0
31 TraesCS5D01G278600 chr7B 81.738 564 55 25 1061 1611 705779212 705779740 1.680000e-115 427.0
32 TraesCS5D01G278600 chr7B 86.026 229 21 7 3009 3227 166283855 166284082 1.090000e-57 235.0
33 TraesCS5D01G278600 chr7B 85.632 174 10 6 881 1040 684171784 684171956 1.120000e-37 169.0
34 TraesCS5D01G278600 chr4B 84.273 674 50 25 953 1611 344470655 344471287 2.010000e-169 606.0
35 TraesCS5D01G278600 chr4B 81.280 625 69 24 828 1431 508267898 508267301 4.600000e-126 462.0
36 TraesCS5D01G278600 chr3A 83.019 583 60 20 1042 1611 313184138 313183582 5.870000e-135 492.0
37 TraesCS5D01G278600 chr3A 85.903 227 25 3 3002 3221 251339708 251339934 1.090000e-57 235.0
38 TraesCS5D01G278600 chr3A 84.322 236 13 8 819 1040 313184786 313184561 6.620000e-50 209.0
39 TraesCS5D01G278600 chr3D 86.784 227 23 3 3002 3221 196949509 196949735 5.040000e-61 246.0
40 TraesCS5D01G278600 chr1B 86.996 223 22 5 3006 3221 167256038 167256260 1.810000e-60 244.0
41 TraesCS5D01G278600 chr3B 86.878 221 21 4 3007 3219 684570648 684570428 2.350000e-59 241.0
42 TraesCS5D01G278600 chr3B 80.675 326 46 13 1038 1358 190848655 190848968 3.030000e-58 237.0
43 TraesCS5D01G278600 chr3B 85.903 227 25 4 3002 3221 279668490 279668716 1.090000e-57 235.0
44 TraesCS5D01G278600 chr4D 85.965 228 14 7 1389 1608 444095331 444095548 1.830000e-55 228.0
45 TraesCS5D01G278600 chr4D 84.211 114 12 3 1250 1358 444095224 444095336 8.930000e-19 106.0
46 TraesCS5D01G278600 chr4A 85.281 231 16 7 1389 1611 731521169 731520949 8.500000e-54 222.0
47 TraesCS5D01G278600 chr4A 94.017 117 7 0 828 944 651216391 651216507 1.870000e-40 178.0
48 TraesCS5D01G278600 chr1A 84.416 231 18 7 1389 1611 26056144 26055924 1.840000e-50 211.0
49 TraesCS5D01G278600 chr1A 83.333 114 13 3 1250 1358 26056251 26056139 4.150000e-17 100.0
50 TraesCS5D01G278600 chr6B 89.209 139 6 5 1470 1608 545357172 545357301 1.450000e-36 165.0
51 TraesCS5D01G278600 chr2D 81.343 134 13 7 1861 1982 185392089 185392222 1.490000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G278600 chr5D 380839294 380845804 6510 False 12024.000000 12024 100.000000 1 6511 1 chr5D.!!$F1 6510
1 TraesCS5D01G278600 chr5D 394746386 394747162 776 True 723.000000 723 84.005000 823 1614 1 chr5D.!!$R2 791
2 TraesCS5D01G278600 chr5D 30832111 30832780 669 True 207.500000 276 84.368500 830 1358 2 chr5D.!!$R3 528
3 TraesCS5D01G278600 chr5B 456975364 456984052 8688 False 1387.666667 3496 89.743333 1 6511 6 chr5B.!!$F2 6510
4 TraesCS5D01G278600 chr5B 167761559 167762114 555 True 335.000000 335 78.487000 795 1369 1 chr5B.!!$R1 574
5 TraesCS5D01G278600 chr5B 457081053 457083006 1953 False 217.000000 228 92.419500 5472 5779 2 chr5B.!!$F3 307
6 TraesCS5D01G278600 chr5A 481664237 481674267 10030 False 1240.714286 2453 93.763286 1 6321 7 chr5A.!!$F2 6320
7 TraesCS5D01G278600 chr5A 580267902 580268818 916 False 244.500000 355 83.097500 830 1608 2 chr5A.!!$F4 778
8 TraesCS5D01G278600 chr6A 254934787 254935582 795 False 717.000000 717 83.532000 803 1611 1 chr6A.!!$F1 808
9 TraesCS5D01G278600 chr7B 705779212 705779740 528 False 427.000000 427 81.738000 1061 1611 1 chr7B.!!$F4 550
10 TraesCS5D01G278600 chr4B 344470655 344471287 632 False 606.000000 606 84.273000 953 1611 1 chr4B.!!$F1 658
11 TraesCS5D01G278600 chr4B 508267301 508267898 597 True 462.000000 462 81.280000 828 1431 1 chr4B.!!$R1 603
12 TraesCS5D01G278600 chr3A 313183582 313184786 1204 True 350.500000 492 83.670500 819 1611 2 chr3A.!!$R1 792

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 1928 0.747255 CGGACGAAGATCCACTCCAT 59.253 55.000 0.00 0.0 38.87 3.41 F
1221 3204 0.107165 GGTTGCCCGCCTCTCTTAAT 60.107 55.000 0.00 0.0 0.00 1.40 F
1222 3205 1.140252 GGTTGCCCGCCTCTCTTAATA 59.860 52.381 0.00 0.0 0.00 0.98 F
1509 3526 1.802365 GGACCAAAATGCGTACGAACT 59.198 47.619 21.65 0.0 0.00 3.01 F
1739 3756 3.377485 ACTTCATTGCATCATCAGTCTGC 59.623 43.478 0.00 0.0 36.45 4.26 F
3468 6134 1.865865 TTGGCTTCTGTTGAGACGAC 58.134 50.000 0.00 0.0 0.00 4.34 F
4861 7581 0.606604 ATGTCCGTAGCTTTGACCGT 59.393 50.000 0.00 0.0 0.00 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1816 4044 2.484264 GCCGCAAATATCCACCATAGTC 59.516 50.000 0.00 0.00 0.00 2.59 R
3069 5377 1.739466 ACATACAGCGTGGCAAGATTG 59.261 47.619 4.11 4.29 0.00 2.67 R
3081 5389 2.160219 CCACATGTCACACACATACAGC 59.840 50.000 0.00 0.00 44.60 4.40 R
3443 6109 3.691118 GTCTCAACAGAAGCCAATGCATA 59.309 43.478 0.00 0.00 41.13 3.14 R
3571 6240 2.489938 TCAGAAGTATGCACCCAACC 57.510 50.000 0.00 0.00 0.00 3.77 R
5375 8100 0.322648 CAGATCACAGGGTGACAGCA 59.677 55.000 7.01 0.00 45.65 4.41 R
6376 14396 0.039798 CGAGAGGGACGTTCGTTGAA 60.040 55.000 0.00 0.00 35.16 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.715439 TTCTAAATGTCCATGGTCCATCT 57.285 39.130 12.58 5.02 0.00 2.90
92 93 5.503357 CGAAAAACAAGTTGTCCTCAATCGA 60.503 40.000 9.40 0.00 35.92 3.59
136 138 3.945921 AGGTTTCATGCAGATCTCATGTG 59.054 43.478 23.09 9.86 41.40 3.21
158 160 2.502295 CCATAGAAAGCTCCATGGCTC 58.498 52.381 6.96 0.31 42.24 4.70
159 161 2.141517 CATAGAAAGCTCCATGGCTCG 58.858 52.381 6.96 0.00 42.24 5.03
160 162 1.195115 TAGAAAGCTCCATGGCTCGT 58.805 50.000 6.96 0.00 42.24 4.18
161 163 1.195115 AGAAAGCTCCATGGCTCGTA 58.805 50.000 6.96 0.00 42.24 3.43
163 165 2.965831 AGAAAGCTCCATGGCTCGTATA 59.034 45.455 6.96 0.00 42.24 1.47
164 166 3.580458 AGAAAGCTCCATGGCTCGTATAT 59.420 43.478 6.96 0.00 42.24 0.86
210 236 3.366374 GGCATCTTTTTCAAGTTCCTCCG 60.366 47.826 0.00 0.00 0.00 4.63
245 271 6.044171 CCTCCTCATCATCTTCCCTTAGATTT 59.956 42.308 0.00 0.00 32.60 2.17
277 303 1.148310 CTGTCGTTGAGCAAATCCGT 58.852 50.000 0.00 0.00 0.00 4.69
344 381 5.104318 ACTTCTTCTTTGTCTGAACTCCCTT 60.104 40.000 0.00 0.00 0.00 3.95
350 387 2.217038 TCTGAACTCCCTTGCCGCT 61.217 57.895 0.00 0.00 0.00 5.52
351 388 0.902984 TCTGAACTCCCTTGCCGCTA 60.903 55.000 0.00 0.00 0.00 4.26
355 392 1.562672 AACTCCCTTGCCGCTACCAT 61.563 55.000 0.00 0.00 0.00 3.55
400 437 1.079127 CTCGCCATGGTTTCCGACT 60.079 57.895 14.67 0.00 0.00 4.18
469 1928 0.747255 CGGACGAAGATCCACTCCAT 59.253 55.000 0.00 0.00 38.87 3.41
491 1950 3.467803 ACAGTGGAAGAAAGGAGTTTCG 58.532 45.455 0.00 0.00 45.90 3.46
495 1954 2.036217 TGGAAGAAAGGAGTTTCGCGTA 59.964 45.455 5.77 0.00 45.90 4.42
527 1998 5.301551 GCCTACTAGACCTTTTAGGGTACTC 59.698 48.000 0.00 0.00 40.58 2.59
543 2014 1.805945 CTCGACGTGCAGCTAACCC 60.806 63.158 0.00 0.00 0.00 4.11
609 2087 4.707563 TCTTGATTGAATTTGCGTGTACG 58.292 39.130 0.00 0.00 43.27 3.67
633 2111 6.752351 CGTGAGCATCTTACTTTGTATGTACT 59.248 38.462 0.00 0.00 34.92 2.73
634 2112 7.253783 CGTGAGCATCTTACTTTGTATGTACTG 60.254 40.741 0.00 0.00 34.92 2.74
637 2115 7.386851 AGCATCTTACTTTGTATGTACTGTGT 58.613 34.615 0.00 0.00 0.00 3.72
684 2171 4.571375 CAAATGTGATTTGTGAATGCGG 57.429 40.909 0.00 0.00 43.47 5.69
685 2172 4.236147 CAAATGTGATTTGTGAATGCGGA 58.764 39.130 0.00 0.00 43.47 5.54
686 2173 3.770263 ATGTGATTTGTGAATGCGGAG 57.230 42.857 0.00 0.00 0.00 4.63
687 2174 1.811965 TGTGATTTGTGAATGCGGAGG 59.188 47.619 0.00 0.00 0.00 4.30
688 2175 0.810648 TGATTTGTGAATGCGGAGGC 59.189 50.000 0.00 0.00 40.52 4.70
777 2264 2.819595 CAATCACCACCCGAGCGG 60.820 66.667 1.06 1.06 37.81 5.52
1059 3033 2.281970 CTCCTGCAGTGCAAGCCA 60.282 61.111 20.22 2.11 38.41 4.75
1219 3202 2.987125 GGTTGCCCGCCTCTCTTA 59.013 61.111 0.00 0.00 0.00 2.10
1220 3203 1.298667 GGTTGCCCGCCTCTCTTAA 59.701 57.895 0.00 0.00 0.00 1.85
1221 3204 0.107165 GGTTGCCCGCCTCTCTTAAT 60.107 55.000 0.00 0.00 0.00 1.40
1222 3205 1.140252 GGTTGCCCGCCTCTCTTAATA 59.860 52.381 0.00 0.00 0.00 0.98
1247 3230 6.866010 AATTGAAAAGAATGAACCTTTGGC 57.134 33.333 0.00 0.00 34.42 4.52
1304 3287 2.485122 GCCTTTCATTCCGTGCGG 59.515 61.111 3.94 3.94 0.00 5.69
1335 3318 2.538939 GGTTTGCTACCGATTTCGATGC 60.539 50.000 0.67 3.62 43.02 3.91
1361 3358 7.711772 CACTAGAGAATTCTGAATGATTGCTCT 59.288 37.037 14.00 12.36 41.48 4.09
1364 3361 4.272991 AGAATTCTGAATGATTGCTCTCGC 59.727 41.667 7.30 0.00 0.00 5.03
1509 3526 1.802365 GGACCAAAATGCGTACGAACT 59.198 47.619 21.65 0.00 0.00 3.01
1674 3691 6.271857 AGGAGAGCAATGTTCAGGTATATCAT 59.728 38.462 0.00 0.00 0.00 2.45
1680 3697 6.540205 CAATGTTCAGGTATATCATCATGCG 58.460 40.000 0.00 0.00 0.00 4.73
1688 3705 6.529477 CAGGTATATCATCATGCGTTCTACAG 59.471 42.308 0.00 0.00 0.00 2.74
1703 3720 6.637365 CGTTCTACAGTAATTAAATCGGCAG 58.363 40.000 0.00 0.00 0.00 4.85
1717 3734 3.417069 TCGGCAGGAAAATCTTCTGAA 57.583 42.857 0.00 0.00 0.00 3.02
1729 3746 7.275123 GGAAAATCTTCTGAACTTCATTGCATC 59.725 37.037 0.00 0.00 0.00 3.91
1730 3747 6.829229 AATCTTCTGAACTTCATTGCATCA 57.171 33.333 0.00 0.00 0.00 3.07
1731 3748 7.406031 AATCTTCTGAACTTCATTGCATCAT 57.594 32.000 0.00 0.00 0.00 2.45
1732 3749 6.432607 TCTTCTGAACTTCATTGCATCATC 57.567 37.500 0.00 0.00 0.00 2.92
1733 3750 5.941647 TCTTCTGAACTTCATTGCATCATCA 59.058 36.000 0.00 0.00 0.00 3.07
1734 3751 5.813080 TCTGAACTTCATTGCATCATCAG 57.187 39.130 0.00 0.00 35.53 2.90
1736 3753 5.353400 TCTGAACTTCATTGCATCATCAGTC 59.647 40.000 0.00 0.00 35.66 3.51
1737 3754 5.250982 TGAACTTCATTGCATCATCAGTCT 58.749 37.500 0.00 0.00 0.00 3.24
1738 3755 5.123344 TGAACTTCATTGCATCATCAGTCTG 59.877 40.000 0.00 0.00 0.00 3.51
1739 3756 3.377485 ACTTCATTGCATCATCAGTCTGC 59.623 43.478 0.00 0.00 36.45 4.26
1741 3758 3.551846 TCATTGCATCATCAGTCTGCAT 58.448 40.909 0.00 0.00 44.65 3.96
1742 3759 3.951680 TCATTGCATCATCAGTCTGCATT 59.048 39.130 0.00 0.00 44.65 3.56
1744 3761 4.794278 TTGCATCATCAGTCTGCATTTT 57.206 36.364 0.00 0.00 44.65 1.82
1746 3763 4.740268 TGCATCATCAGTCTGCATTTTTC 58.260 39.130 0.00 0.00 40.75 2.29
1747 3764 4.461431 TGCATCATCAGTCTGCATTTTTCT 59.539 37.500 0.00 0.00 40.75 2.52
1750 3767 6.387465 CATCATCAGTCTGCATTTTTCTTGT 58.613 36.000 0.00 0.00 0.00 3.16
1761 3794 8.579006 TCTGCATTTTTCTTGTTCTTACATGAT 58.421 29.630 0.00 0.00 38.00 2.45
1762 3795 9.199982 CTGCATTTTTCTTGTTCTTACATGATT 57.800 29.630 0.00 0.00 38.00 2.57
1816 4044 7.447374 TGTAGTGTCAATAAAATGTTCAGGG 57.553 36.000 0.00 0.00 0.00 4.45
1829 4057 4.002256 TGTTCAGGGACTATGGTGGATA 57.998 45.455 0.00 0.00 36.02 2.59
1879 4120 6.187727 TCAAGGTTCTAGTCAAATGGAAGT 57.812 37.500 0.00 0.00 0.00 3.01
1887 4128 6.711277 TCTAGTCAAATGGAAGTTGCACTAT 58.289 36.000 0.00 0.00 42.52 2.12
2041 4282 7.722728 AGGCATGAATATCTGAGCTTTCAATTA 59.277 33.333 0.00 0.00 32.35 1.40
2205 4446 4.095483 GTCAGTTTCATGATCTTGCGGAAT 59.905 41.667 0.00 0.00 0.00 3.01
2285 4526 8.500773 GTTTTCACGATTCCTACTGTATTTTGA 58.499 33.333 0.00 0.00 0.00 2.69
2455 4696 7.582667 ACTAACCAGCACAATTTTCTTTAGT 57.417 32.000 0.00 0.00 0.00 2.24
2457 4698 9.127277 ACTAACCAGCACAATTTTCTTTAGTAA 57.873 29.630 0.00 0.00 0.00 2.24
2866 5163 7.860872 ACTTTGCTGCTTTTGTTATACTGTTAC 59.139 33.333 0.00 0.00 0.00 2.50
2993 5301 6.362248 TGGTATAGATTTAAGGGCCTGTTTC 58.638 40.000 6.92 2.04 0.00 2.78
3030 5338 4.002906 TGTCACACTTGCCTTACCTTAG 57.997 45.455 0.00 0.00 0.00 2.18
3311 5619 4.097286 TGCCCAAAGATAATAGGCGTTTTC 59.903 41.667 0.00 0.00 46.92 2.29
3468 6134 1.865865 TTGGCTTCTGTTGAGACGAC 58.134 50.000 0.00 0.00 0.00 4.34
3571 6240 1.101049 ATTGGTATTCAAGCCGCCCG 61.101 55.000 0.00 0.00 38.95 6.13
3771 6441 3.181488 TGTTGTTGTTGTGATCTGGCTTG 60.181 43.478 0.00 0.00 0.00 4.01
3794 6464 8.925161 TTGGCAATTGTTGTATAAAGCTTATC 57.075 30.769 7.40 0.00 0.00 1.75
3865 6535 2.256174 CACTTTGCAGCAATTGGATCG 58.744 47.619 9.12 0.00 0.00 3.69
3891 6561 6.708285 ACTCACATCCGAACTATTTAACCTT 58.292 36.000 0.00 0.00 0.00 3.50
4072 6742 8.946085 TCTGTTGTAGTTATATCAAAGGCTTTG 58.054 33.333 29.60 29.60 41.96 2.77
4126 6796 6.208988 TCTGTAGTGCTATAGTTTCAGTGG 57.791 41.667 0.84 0.00 0.00 4.00
4187 6857 5.749462 AGGTCCACTGAAATAATTCCAGAG 58.251 41.667 0.00 0.00 34.49 3.35
4246 6916 8.237811 AGTTTCTGGTTTTACTTCATCACAAT 57.762 30.769 0.00 0.00 0.00 2.71
4287 6957 8.763356 TCATTGCAAATAAAGTTGACATTTGTC 58.237 29.630 1.71 3.72 44.97 3.18
4424 7099 7.148705 GCCTTTAAAATTTAAGCTTGGTTACCG 60.149 37.037 9.86 0.00 0.00 4.02
4692 7387 5.596836 TTTGTTGGTCTTGCTGAGATTTT 57.403 34.783 0.00 0.00 36.61 1.82
4701 7396 6.034591 GTCTTGCTGAGATTTTGGATTGATG 58.965 40.000 0.00 0.00 36.61 3.07
4849 7569 3.442625 TCGAGACACTTGATAATGTCCGT 59.557 43.478 11.95 0.00 45.28 4.69
4850 7570 4.637091 TCGAGACACTTGATAATGTCCGTA 59.363 41.667 11.95 2.05 45.28 4.02
4855 7575 5.488341 ACACTTGATAATGTCCGTAGCTTT 58.512 37.500 0.00 0.00 0.00 3.51
4861 7581 0.606604 ATGTCCGTAGCTTTGACCGT 59.393 50.000 0.00 0.00 0.00 4.83
4945 7665 1.905843 TGGTTGGGGCATTTCACCG 60.906 57.895 0.00 0.00 0.00 4.94
4986 7706 6.611236 ACATTTGGCCAGGTTTAGCTTATTAT 59.389 34.615 5.11 0.00 0.00 1.28
5348 8073 5.760253 AGCATACTTTCATCCAGGTAATTCG 59.240 40.000 0.00 0.00 0.00 3.34
5351 8076 7.041098 GCATACTTTCATCCAGGTAATTCGATT 60.041 37.037 0.00 0.00 0.00 3.34
5352 8077 6.927294 ACTTTCATCCAGGTAATTCGATTC 57.073 37.500 0.00 0.00 0.00 2.52
5355 8080 6.485830 TTCATCCAGGTAATTCGATTCTCT 57.514 37.500 0.00 0.00 0.00 3.10
5356 8081 5.847304 TCATCCAGGTAATTCGATTCTCTG 58.153 41.667 0.00 0.00 0.00 3.35
5358 8083 5.263968 TCCAGGTAATTCGATTCTCTGTC 57.736 43.478 0.00 0.00 0.00 3.51
5360 8085 4.141937 CCAGGTAATTCGATTCTCTGTCCA 60.142 45.833 0.00 0.00 0.00 4.02
5361 8086 5.453903 CCAGGTAATTCGATTCTCTGTCCAT 60.454 44.000 0.00 0.00 0.00 3.41
5362 8087 5.694006 CAGGTAATTCGATTCTCTGTCCATC 59.306 44.000 0.00 0.00 0.00 3.51
5363 8088 4.681942 GGTAATTCGATTCTCTGTCCATCG 59.318 45.833 0.00 0.00 40.98 3.84
5364 8089 2.209838 TTCGATTCTCTGTCCATCGC 57.790 50.000 0.00 0.00 39.73 4.58
5375 8100 1.895798 TGTCCATCGCTCAGTTCTCTT 59.104 47.619 0.00 0.00 0.00 2.85
5385 8111 1.070758 TCAGTTCTCTTGCTGTCACCC 59.929 52.381 0.00 0.00 34.57 4.61
5404 8130 2.695666 CCCTGTGATCTGTCCGTATTCT 59.304 50.000 0.00 0.00 0.00 2.40
5540 8266 5.053811 CCTAGGCCATTCGTTTTTGTTTTT 58.946 37.500 5.01 0.00 0.00 1.94
5550 8276 9.903185 CATTCGTTTTTGTTTTTATTTTACGGT 57.097 25.926 0.00 0.00 0.00 4.83
5606 8337 0.387878 AGCGCGTGATAGCTAGATGC 60.388 55.000 8.43 4.71 42.60 3.91
5662 10048 1.005394 GGGTCTCGCTCCGTTTTGA 60.005 57.895 0.00 0.00 0.00 2.69
5798 13663 4.062293 GTTGGCTGTGTAGTGTAACATGA 58.938 43.478 0.00 0.00 41.43 3.07
5807 13672 3.526931 AGTGTAACATGAGACGATGGG 57.473 47.619 0.00 0.00 41.43 4.00
5808 13673 1.933853 GTGTAACATGAGACGATGGGC 59.066 52.381 0.00 0.00 36.32 5.36
5809 13674 1.552792 TGTAACATGAGACGATGGGCA 59.447 47.619 0.00 0.00 0.00 5.36
5835 13735 3.631145 ATAACTTGTGCAGCAGTTGTG 57.369 42.857 17.23 0.00 0.00 3.33
5838 13738 0.457035 CTTGTGCAGCAGTTGTGGTT 59.543 50.000 0.00 0.00 29.64 3.67
5848 13748 3.951037 AGCAGTTGTGGTTAACATTGTGA 59.049 39.130 8.10 0.00 38.99 3.58
5858 13758 9.653287 TGTGGTTAACATTGTGAACAAATTAAA 57.347 25.926 17.03 0.00 39.55 1.52
5871 13771 9.233232 GTGAACAAATTAAACAAGTTTCGATCT 57.767 29.630 0.81 0.00 34.23 2.75
5877 13777 9.774742 AAATTAAACAAGTTTCGATCTCATAGC 57.225 29.630 0.81 0.00 34.23 2.97
5881 13781 3.742433 AGTTTCGATCTCATAGCAGGG 57.258 47.619 0.00 0.00 0.00 4.45
5919 13833 1.087202 TCGAACCGGCATGGATTTCG 61.087 55.000 13.23 13.23 43.79 3.46
5931 13845 3.394674 TGGATTTCGTCAGCTTGTACA 57.605 42.857 0.00 0.00 0.00 2.90
5935 13849 4.631813 GGATTTCGTCAGCTTGTACAGATT 59.368 41.667 0.00 0.00 0.00 2.40
5936 13850 4.990543 TTTCGTCAGCTTGTACAGATTG 57.009 40.909 0.00 0.00 0.00 2.67
5938 13852 4.251543 TCGTCAGCTTGTACAGATTGAA 57.748 40.909 0.00 0.00 0.00 2.69
5939 13853 4.237724 TCGTCAGCTTGTACAGATTGAAG 58.762 43.478 0.00 4.24 0.00 3.02
5940 13854 3.181526 CGTCAGCTTGTACAGATTGAAGC 60.182 47.826 6.83 6.83 40.97 3.86
5941 13855 3.126000 GTCAGCTTGTACAGATTGAAGCC 59.874 47.826 10.59 0.00 41.47 4.35
5942 13856 3.008375 TCAGCTTGTACAGATTGAAGCCT 59.992 43.478 10.59 0.00 41.47 4.58
5943 13857 3.126514 CAGCTTGTACAGATTGAAGCCTG 59.873 47.826 10.59 5.94 41.47 4.85
5944 13858 3.077359 GCTTGTACAGATTGAAGCCTGT 58.923 45.455 3.99 7.87 44.81 4.00
5945 13859 3.503748 GCTTGTACAGATTGAAGCCTGTT 59.496 43.478 8.03 0.00 42.86 3.16
5946 13860 4.614535 GCTTGTACAGATTGAAGCCTGTTG 60.615 45.833 8.03 0.00 42.86 3.33
5947 13861 4.085357 TGTACAGATTGAAGCCTGTTGT 57.915 40.909 8.03 0.00 42.86 3.32
5948 13862 3.814842 TGTACAGATTGAAGCCTGTTGTG 59.185 43.478 8.03 0.00 42.86 3.33
5949 13863 3.213206 ACAGATTGAAGCCTGTTGTGA 57.787 42.857 0.00 0.00 40.40 3.58
5950 13864 3.554934 ACAGATTGAAGCCTGTTGTGAA 58.445 40.909 0.00 0.00 40.40 3.18
5951 13865 3.953612 ACAGATTGAAGCCTGTTGTGAAA 59.046 39.130 0.00 0.00 40.40 2.69
5952 13866 4.586001 ACAGATTGAAGCCTGTTGTGAAAT 59.414 37.500 0.00 0.00 40.40 2.17
5953 13867 5.769662 ACAGATTGAAGCCTGTTGTGAAATA 59.230 36.000 0.00 0.00 40.40 1.40
5954 13868 6.072286 ACAGATTGAAGCCTGTTGTGAAATAG 60.072 38.462 0.00 0.00 40.40 1.73
5955 13869 4.503741 TTGAAGCCTGTTGTGAAATAGC 57.496 40.909 0.00 0.00 0.00 2.97
5956 13870 3.485394 TGAAGCCTGTTGTGAAATAGCA 58.515 40.909 0.00 0.00 0.00 3.49
5957 13871 4.081406 TGAAGCCTGTTGTGAAATAGCAT 58.919 39.130 0.00 0.00 0.00 3.79
5958 13872 4.082625 TGAAGCCTGTTGTGAAATAGCATG 60.083 41.667 0.00 0.00 0.00 4.06
5959 13873 3.424703 AGCCTGTTGTGAAATAGCATGT 58.575 40.909 0.00 0.00 0.00 3.21
5960 13874 4.588899 AGCCTGTTGTGAAATAGCATGTA 58.411 39.130 0.00 0.00 0.00 2.29
5961 13875 5.195940 AGCCTGTTGTGAAATAGCATGTAT 58.804 37.500 0.00 0.00 0.00 2.29
5962 13876 5.653769 AGCCTGTTGTGAAATAGCATGTATT 59.346 36.000 0.00 0.00 0.00 1.89
5963 13877 6.153340 AGCCTGTTGTGAAATAGCATGTATTT 59.847 34.615 10.93 10.93 0.00 1.40
5964 13878 6.254157 GCCTGTTGTGAAATAGCATGTATTTG 59.746 38.462 14.17 3.77 0.00 2.32
5965 13879 7.537715 CCTGTTGTGAAATAGCATGTATTTGA 58.462 34.615 14.17 6.82 0.00 2.69
5966 13880 8.028354 CCTGTTGTGAAATAGCATGTATTTGAA 58.972 33.333 14.17 4.52 0.00 2.69
5967 13881 8.969121 TGTTGTGAAATAGCATGTATTTGAAG 57.031 30.769 14.17 0.00 0.00 3.02
5968 13882 7.541783 TGTTGTGAAATAGCATGTATTTGAAGC 59.458 33.333 14.17 0.00 0.00 3.86
5969 13883 6.563422 TGTGAAATAGCATGTATTTGAAGCC 58.437 36.000 14.17 4.80 0.00 4.35
5970 13884 6.377996 TGTGAAATAGCATGTATTTGAAGCCT 59.622 34.615 14.17 0.00 0.00 4.58
5971 13885 7.093814 TGTGAAATAGCATGTATTTGAAGCCTT 60.094 33.333 14.17 0.00 0.00 4.35
5972 13886 7.221452 GTGAAATAGCATGTATTTGAAGCCTTG 59.779 37.037 14.17 0.00 0.00 3.61
5973 13887 6.780457 AATAGCATGTATTTGAAGCCTTGT 57.220 33.333 0.00 0.00 0.00 3.16
5974 13888 6.780457 ATAGCATGTATTTGAAGCCTTGTT 57.220 33.333 0.00 0.00 0.00 2.83
5975 13889 7.880160 ATAGCATGTATTTGAAGCCTTGTTA 57.120 32.000 0.00 0.00 0.00 2.41
5976 13890 5.954335 AGCATGTATTTGAAGCCTTGTTAC 58.046 37.500 0.00 0.00 0.00 2.50
5977 13891 5.476599 AGCATGTATTTGAAGCCTTGTTACA 59.523 36.000 0.00 0.00 0.00 2.41
5978 13892 5.801947 GCATGTATTTGAAGCCTTGTTACAG 59.198 40.000 0.00 0.00 0.00 2.74
5979 13893 6.349280 GCATGTATTTGAAGCCTTGTTACAGA 60.349 38.462 0.00 0.00 0.00 3.41
5980 13894 7.629222 GCATGTATTTGAAGCCTTGTTACAGAT 60.629 37.037 0.00 0.00 0.00 2.90
5984 13898 4.623932 TGAAGCCTTGTTACAGATCTGT 57.376 40.909 30.11 30.11 46.87 3.41
5996 13910 4.073293 ACAGATCTGTCGTTGGTTTCTT 57.927 40.909 22.89 0.00 40.24 2.52
5997 13911 4.058817 ACAGATCTGTCGTTGGTTTCTTC 58.941 43.478 22.89 0.00 40.24 2.87
6003 14011 6.097915 TCTGTCGTTGGTTTCTTCTCTATT 57.902 37.500 0.00 0.00 0.00 1.73
6023 14031 5.664294 ATTAATTTGAAGCCTGTGCATCA 57.336 34.783 0.00 0.00 42.97 3.07
6024 14032 5.664294 TTAATTTGAAGCCTGTGCATCAT 57.336 34.783 0.00 0.00 43.96 2.45
6027 14035 0.745486 TGAAGCCTGTGCATCATCCG 60.745 55.000 0.00 0.00 40.06 4.18
6028 14036 2.056481 GAAGCCTGTGCATCATCCGC 62.056 60.000 0.00 0.00 41.13 5.54
6030 14038 3.274586 CCTGTGCATCATCCGCCG 61.275 66.667 0.00 0.00 0.00 6.46
6045 14059 2.027169 CCGGCCGGTCGTCTTATC 59.973 66.667 36.64 0.00 0.00 1.75
6082 14096 4.828296 CCATGGTCCCTGGCTGGC 62.828 72.222 2.57 0.00 0.00 4.85
6087 14101 2.677875 GTCCCTGGCTGGCCTTTG 60.678 66.667 13.05 0.00 36.94 2.77
6088 14102 2.858476 TCCCTGGCTGGCCTTTGA 60.858 61.111 13.05 3.69 36.94 2.69
6089 14103 2.240918 TCCCTGGCTGGCCTTTGAT 61.241 57.895 13.05 0.00 36.94 2.57
6090 14104 2.056223 CCCTGGCTGGCCTTTGATG 61.056 63.158 13.05 0.00 36.94 3.07
6097 14111 3.508840 GGCCTTTGATGCCGTCGG 61.509 66.667 6.99 6.99 39.48 4.79
6098 14112 2.746277 GCCTTTGATGCCGTCGGT 60.746 61.111 13.94 0.00 0.00 4.69
6122 14136 2.782045 CGACGACGACGACTAGCGA 61.782 63.158 15.32 0.00 44.66 4.93
6123 14137 1.013539 GACGACGACGACTAGCGAG 60.014 63.158 15.32 0.00 44.57 5.03
6124 14138 2.320383 CGACGACGACTAGCGAGG 59.680 66.667 0.00 6.77 44.57 4.63
6125 14139 2.163390 CGACGACGACTAGCGAGGA 61.163 63.158 0.00 0.00 44.57 3.71
6126 14140 1.489070 CGACGACGACTAGCGAGGAT 61.489 60.000 0.00 0.00 44.57 3.24
6127 14141 1.495878 GACGACGACTAGCGAGGATA 58.504 55.000 0.00 0.00 44.57 2.59
6129 14143 3.249091 GACGACGACTAGCGAGGATATA 58.751 50.000 0.00 0.00 44.57 0.86
6130 14144 2.992543 ACGACGACTAGCGAGGATATAC 59.007 50.000 0.00 0.00 44.57 1.47
6131 14145 3.252400 CGACGACTAGCGAGGATATACT 58.748 50.000 12.46 0.00 44.57 2.12
6132 14146 3.061028 CGACGACTAGCGAGGATATACTG 59.939 52.174 12.46 0.00 44.57 2.74
6134 14148 5.144692 ACGACTAGCGAGGATATACTGTA 57.855 43.478 12.46 0.00 44.57 2.74
6136 14150 5.170021 CGACTAGCGAGGATATACTGTAGT 58.830 45.833 0.00 0.00 44.57 2.73
6137 14151 6.071672 ACGACTAGCGAGGATATACTGTAGTA 60.072 42.308 12.46 0.00 44.57 1.82
6139 14153 7.243604 ACTAGCGAGGATATACTGTAGTACT 57.756 40.000 0.00 0.00 32.72 2.73
6140 14154 8.359875 ACTAGCGAGGATATACTGTAGTACTA 57.640 38.462 0.00 0.00 32.72 1.82
6142 14156 7.243604 AGCGAGGATATACTGTAGTACTAGT 57.756 40.000 1.87 3.02 32.72 2.57
6144 14158 8.980596 AGCGAGGATATACTGTAGTACTAGTAT 58.019 37.037 18.12 18.12 41.57 2.12
6145 14159 9.033481 GCGAGGATATACTGTAGTACTAGTATG 57.967 40.741 21.23 9.77 39.67 2.39
6153 14167 7.443302 ACTGTAGTACTAGTATGTAGGACCA 57.557 40.000 5.75 0.00 0.00 4.02
6154 14168 7.507829 ACTGTAGTACTAGTATGTAGGACCAG 58.492 42.308 5.75 5.18 0.00 4.00
6155 14169 6.294473 TGTAGTACTAGTATGTAGGACCAGC 58.706 44.000 5.75 0.00 0.00 4.85
6157 14171 5.131784 AGTACTAGTATGTAGGACCAGCAC 58.868 45.833 5.75 0.00 0.00 4.40
6158 14172 3.977312 ACTAGTATGTAGGACCAGCACA 58.023 45.455 0.00 0.00 0.00 4.57
6159 14173 3.954904 ACTAGTATGTAGGACCAGCACAG 59.045 47.826 0.00 0.00 0.00 3.66
6161 14175 0.830648 TATGTAGGACCAGCACAGGC 59.169 55.000 0.00 0.00 41.61 4.85
6162 14176 1.200760 ATGTAGGACCAGCACAGGCA 61.201 55.000 0.00 0.00 44.61 4.75
6163 14177 1.374947 GTAGGACCAGCACAGGCAA 59.625 57.895 0.00 0.00 44.61 4.52
6165 14179 1.841302 TAGGACCAGCACAGGCAAGG 61.841 60.000 0.00 0.00 44.61 3.61
6166 14180 3.368571 GACCAGCACAGGCAAGGC 61.369 66.667 0.00 0.00 44.61 4.35
6167 14181 4.208403 ACCAGCACAGGCAAGGCA 62.208 61.111 0.00 0.00 44.61 4.75
6168 14182 3.371063 CCAGCACAGGCAAGGCAG 61.371 66.667 0.00 0.00 44.61 4.85
6169 14183 3.371063 CAGCACAGGCAAGGCAGG 61.371 66.667 0.00 0.00 44.61 4.85
6170 14184 4.673375 AGCACAGGCAAGGCAGGG 62.673 66.667 0.00 0.00 44.61 4.45
6171 14185 4.666253 GCACAGGCAAGGCAGGGA 62.666 66.667 0.00 0.00 40.72 4.20
6172 14186 2.115910 CACAGGCAAGGCAGGGAA 59.884 61.111 0.00 0.00 0.00 3.97
6173 14187 1.304713 CACAGGCAAGGCAGGGAAT 60.305 57.895 0.00 0.00 0.00 3.01
6215 14235 2.501610 GCCTCGGTCCATCACCTC 59.498 66.667 0.00 0.00 44.21 3.85
6216 14236 3.095347 GCCTCGGTCCATCACCTCC 62.095 68.421 0.00 0.00 44.21 4.30
6218 14238 2.365105 TCGGTCCATCACCTCCCC 60.365 66.667 0.00 0.00 44.21 4.81
6219 14239 3.480133 CGGTCCATCACCTCCCCC 61.480 72.222 0.00 0.00 44.21 5.40
6220 14240 2.042930 GGTCCATCACCTCCCCCT 59.957 66.667 0.00 0.00 42.84 4.79
6221 14241 2.378634 GGTCCATCACCTCCCCCTG 61.379 68.421 0.00 0.00 42.84 4.45
6222 14242 1.306997 GTCCATCACCTCCCCCTGA 60.307 63.158 0.00 0.00 0.00 3.86
6225 14245 1.685765 CATCACCTCCCCCTGACGA 60.686 63.158 0.00 0.00 0.00 4.20
6226 14246 1.381872 ATCACCTCCCCCTGACGAG 60.382 63.158 0.00 0.00 0.00 4.18
6227 14247 1.875422 ATCACCTCCCCCTGACGAGA 61.875 60.000 0.00 0.00 0.00 4.04
6228 14248 2.037527 ACCTCCCCCTGACGAGAC 59.962 66.667 0.00 0.00 0.00 3.36
6229 14249 2.760385 CCTCCCCCTGACGAGACC 60.760 72.222 0.00 0.00 0.00 3.85
6230 14250 2.760385 CTCCCCCTGACGAGACCC 60.760 72.222 0.00 0.00 0.00 4.46
6231 14251 3.273654 TCCCCCTGACGAGACCCT 61.274 66.667 0.00 0.00 0.00 4.34
6232 14252 3.077556 CCCCCTGACGAGACCCTG 61.078 72.222 0.00 0.00 0.00 4.45
6233 14253 2.283966 CCCCTGACGAGACCCTGT 60.284 66.667 0.00 0.00 0.00 4.00
6234 14254 2.650116 CCCCTGACGAGACCCTGTG 61.650 68.421 0.00 0.00 0.00 3.66
6235 14255 1.606601 CCCTGACGAGACCCTGTGA 60.607 63.158 0.00 0.00 0.00 3.58
6236 14256 1.587054 CCTGACGAGACCCTGTGAC 59.413 63.158 0.00 0.00 0.00 3.67
6256 14276 2.582959 GTGAGTGACGATGCGGATC 58.417 57.895 6.88 6.88 0.00 3.36
6287 14307 0.665068 CGAACCAACGATGTCGACCA 60.665 55.000 14.12 1.26 43.02 4.02
6301 14321 0.752743 CGACCATGCCACCATTCCAT 60.753 55.000 0.00 0.00 0.00 3.41
6333 14353 0.378257 CACTGACAGCGCAAAGTGTT 59.622 50.000 11.47 0.00 36.20 3.32
6360 14380 4.283467 AGCACAGTTACCACAGAGAATACA 59.717 41.667 0.00 0.00 0.00 2.29
6365 14385 5.122396 CAGTTACCACAGAGAATACAAAGCC 59.878 44.000 0.00 0.00 0.00 4.35
6368 14388 3.055094 ACCACAGAGAATACAAAGCCGAT 60.055 43.478 0.00 0.00 0.00 4.18
6375 14395 4.192317 AGAATACAAAGCCGATGAGAACC 58.808 43.478 0.00 0.00 0.00 3.62
6376 14396 3.914426 ATACAAAGCCGATGAGAACCT 57.086 42.857 0.00 0.00 0.00 3.50
6378 14398 2.427506 ACAAAGCCGATGAGAACCTTC 58.572 47.619 0.00 0.00 0.00 3.46
6379 14399 2.224523 ACAAAGCCGATGAGAACCTTCA 60.225 45.455 0.00 0.00 0.00 3.02
6380 14400 2.813754 CAAAGCCGATGAGAACCTTCAA 59.186 45.455 0.00 0.00 0.00 2.69
6381 14401 2.100605 AGCCGATGAGAACCTTCAAC 57.899 50.000 0.00 0.00 0.00 3.18
6382 14402 0.721718 GCCGATGAGAACCTTCAACG 59.278 55.000 0.00 0.00 41.32 4.10
6383 14403 1.671850 GCCGATGAGAACCTTCAACGA 60.672 52.381 7.16 0.00 43.41 3.85
6385 14405 2.412089 CCGATGAGAACCTTCAACGAAC 59.588 50.000 7.16 0.00 43.41 3.95
6387 14407 2.589798 TGAGAACCTTCAACGAACGT 57.410 45.000 0.00 0.00 0.00 3.99
6388 14408 2.466846 TGAGAACCTTCAACGAACGTC 58.533 47.619 0.00 0.00 0.00 4.34
6391 14411 0.466963 AACCTTCAACGAACGTCCCT 59.533 50.000 0.00 0.00 0.00 4.20
6392 14412 0.033090 ACCTTCAACGAACGTCCCTC 59.967 55.000 0.00 0.00 0.00 4.30
6393 14413 0.317479 CCTTCAACGAACGTCCCTCT 59.683 55.000 0.00 0.00 0.00 3.69
6394 14414 1.669211 CCTTCAACGAACGTCCCTCTC 60.669 57.143 0.00 0.00 0.00 3.20
6395 14415 0.039798 TTCAACGAACGTCCCTCTCG 60.040 55.000 5.11 5.11 38.53 4.04
6397 14417 2.558286 AACGAACGTCCCTCTCGCA 61.558 57.895 6.50 0.00 36.03 5.10
6398 14418 2.504244 CGAACGTCCCTCTCGCAC 60.504 66.667 0.00 0.00 0.00 5.34
6400 14420 1.444553 GAACGTCCCTCTCGCACAG 60.445 63.158 0.00 0.00 0.00 3.66
6401 14421 1.863662 GAACGTCCCTCTCGCACAGA 61.864 60.000 0.00 0.00 0.00 3.41
6407 14427 4.900154 CTCTCGCACAGAGGGTTC 57.100 61.111 2.23 0.00 44.75 3.62
6408 14428 2.271940 CTCTCGCACAGAGGGTTCT 58.728 57.895 2.23 0.00 44.75 3.01
6420 14440 4.171878 AGAGGGTTCTGATCTACGATGA 57.828 45.455 0.00 0.00 30.72 2.92
6421 14441 4.141287 AGAGGGTTCTGATCTACGATGAG 58.859 47.826 0.00 0.00 30.72 2.90
6422 14442 4.138290 GAGGGTTCTGATCTACGATGAGA 58.862 47.826 0.00 0.00 0.00 3.27
6423 14443 4.537751 AGGGTTCTGATCTACGATGAGAA 58.462 43.478 2.34 2.34 0.00 2.87
6424 14444 5.144100 AGGGTTCTGATCTACGATGAGAAT 58.856 41.667 8.56 0.00 0.00 2.40
6425 14445 6.307776 AGGGTTCTGATCTACGATGAGAATA 58.692 40.000 8.56 0.00 0.00 1.75
6448 14476 1.073025 AGTGGATTGTTGGAGCGCA 59.927 52.632 11.47 0.00 0.00 6.09
6459 14487 2.418368 TGGAGCGCAAAACTATCCAT 57.582 45.000 11.47 0.00 35.16 3.41
6468 14496 4.982295 CGCAAAACTATCCATCGATCTACA 59.018 41.667 0.00 0.00 0.00 2.74
6475 14503 3.298686 TCCATCGATCTACAGTGGAGT 57.701 47.619 1.29 0.00 34.23 3.85
6477 14505 3.632604 TCCATCGATCTACAGTGGAGTTC 59.367 47.826 1.29 2.60 34.23 3.01
6479 14507 4.822350 CCATCGATCTACAGTGGAGTTCTA 59.178 45.833 10.97 1.59 31.59 2.10
6490 14518 5.940470 ACAGTGGAGTTCTATTTCATCCAAC 59.060 40.000 0.00 0.00 41.52 3.77
6491 14519 5.063944 CAGTGGAGTTCTATTTCATCCAACG 59.936 44.000 0.00 0.00 41.52 4.10
6510 14538 4.424711 GGACGGGCATGGGCTCAA 62.425 66.667 0.00 0.00 42.15 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.715439 AAGATGGACCATGGACATTTAGA 57.285 39.130 21.47 0.00 0.00 2.10
12 13 3.629398 GTGATGAAAGATGGACCATGGAC 59.371 47.826 21.47 13.12 0.00 4.02
26 27 0.396435 ACTGGGAGCGTGTGATGAAA 59.604 50.000 0.00 0.00 0.00 2.69
136 138 1.613836 CCATGGAGCTTTCTATGGGC 58.386 55.000 5.56 0.00 42.72 5.36
158 160 5.217978 TGGTTTTAGCCAGGGTATATACG 57.782 43.478 6.79 0.00 33.97 3.06
159 161 6.775708 TCATGGTTTTAGCCAGGGTATATAC 58.224 40.000 4.14 4.14 42.47 1.47
160 162 7.395525 TTCATGGTTTTAGCCAGGGTATATA 57.604 36.000 0.00 0.00 42.47 0.86
161 163 5.922960 TCATGGTTTTAGCCAGGGTATAT 57.077 39.130 0.00 0.00 42.47 0.86
163 165 4.601406 TTCATGGTTTTAGCCAGGGTAT 57.399 40.909 0.00 0.00 42.47 2.73
164 166 4.601406 ATTCATGGTTTTAGCCAGGGTA 57.399 40.909 0.00 0.00 42.47 3.69
210 236 1.977293 GATGAGGAGGAGGTGGTGCC 61.977 65.000 0.00 0.00 37.58 5.01
245 271 1.313091 ACGACAGGCTGCGTCATCTA 61.313 55.000 24.26 0.00 35.59 1.98
344 381 0.978667 TAGGGTTGATGGTAGCGGCA 60.979 55.000 1.45 0.00 0.00 5.69
350 387 1.117150 GGCGTCTAGGGTTGATGGTA 58.883 55.000 0.00 0.00 0.00 3.25
351 388 1.905512 GGCGTCTAGGGTTGATGGT 59.094 57.895 0.00 0.00 0.00 3.55
355 392 3.766691 GGCGGCGTCTAGGGTTGA 61.767 66.667 9.37 0.00 0.00 3.18
469 1928 4.628074 CGAAACTCCTTTCTTCCACTGTA 58.372 43.478 0.00 0.00 34.62 2.74
495 1954 0.953003 GGTCTAGTAGGCGATCGCTT 59.047 55.000 36.25 32.26 41.60 4.68
498 1957 3.712091 AAAAGGTCTAGTAGGCGATCG 57.288 47.619 11.69 11.69 0.00 3.69
509 1980 3.941483 CGTCGAGTACCCTAAAAGGTCTA 59.059 47.826 0.00 0.00 41.58 2.59
527 1998 2.813908 GGGGTTAGCTGCACGTCG 60.814 66.667 1.02 0.00 0.00 5.12
609 2087 7.545965 ACAGTACATACAAAGTAAGATGCTCAC 59.454 37.037 0.00 0.00 0.00 3.51
664 2151 4.487948 CTCCGCATTCACAAATCACATTT 58.512 39.130 0.00 0.00 0.00 2.32
1221 3204 9.651913 GCCAAAGGTTCATTCTTTTCAATTATA 57.348 29.630 0.00 0.00 32.72 0.98
1222 3205 7.331687 CGCCAAAGGTTCATTCTTTTCAATTAT 59.668 33.333 0.00 0.00 32.72 1.28
1247 3230 1.140407 GCTAGCAACCTCGTACAGCG 61.140 60.000 10.63 0.00 43.01 5.18
1255 3238 2.939103 ACATTCAATCGCTAGCAACCTC 59.061 45.455 16.45 0.00 0.00 3.85
1331 3314 7.966246 ATCATTCAGAATTCTCTAGTGCATC 57.034 36.000 4.57 0.00 0.00 3.91
1335 3318 7.711772 AGAGCAATCATTCAGAATTCTCTAGTG 59.288 37.037 4.57 4.41 31.59 2.74
1361 3358 6.092807 TGCACAACATTATTACACTATTGCGA 59.907 34.615 0.00 0.00 0.00 5.10
1364 3361 8.236586 ACACTGCACAACATTATTACACTATTG 58.763 33.333 0.00 0.00 0.00 1.90
1674 3691 7.042992 CCGATTTAATTACTGTAGAACGCATGA 60.043 37.037 0.00 0.00 0.00 3.07
1680 3697 6.759827 TCCTGCCGATTTAATTACTGTAGAAC 59.240 38.462 0.00 0.00 0.00 3.01
1688 3705 8.406297 AGAAGATTTTCCTGCCGATTTAATTAC 58.594 33.333 0.00 0.00 33.64 1.89
1703 3720 6.449698 TGCAATGAAGTTCAGAAGATTTTCC 58.550 36.000 11.91 0.00 33.64 3.13
1717 3734 3.377485 GCAGACTGATGATGCAATGAAGT 59.623 43.478 6.65 0.00 39.75 3.01
1729 3746 6.444633 AGAACAAGAAAAATGCAGACTGATG 58.555 36.000 6.65 0.00 0.00 3.07
1730 3747 6.645790 AGAACAAGAAAAATGCAGACTGAT 57.354 33.333 6.65 0.00 0.00 2.90
1731 3748 6.455360 AAGAACAAGAAAAATGCAGACTGA 57.545 33.333 6.65 0.00 0.00 3.41
1732 3749 7.195646 TGTAAGAACAAGAAAAATGCAGACTG 58.804 34.615 0.00 0.00 30.91 3.51
1733 3750 7.333528 TGTAAGAACAAGAAAAATGCAGACT 57.666 32.000 0.00 0.00 30.91 3.24
1734 3751 7.862372 TCATGTAAGAACAAGAAAAATGCAGAC 59.138 33.333 0.00 0.00 39.58 3.51
1736 3753 8.752766 ATCATGTAAGAACAAGAAAAATGCAG 57.247 30.769 0.00 0.00 36.94 4.41
1737 3754 9.545105 AAATCATGTAAGAACAAGAAAAATGCA 57.455 25.926 0.00 0.00 36.94 3.96
1773 3806 3.431415 ACAGCTTCCATTTTAGTTCCCC 58.569 45.455 0.00 0.00 0.00 4.81
1774 3807 5.123979 CACTACAGCTTCCATTTTAGTTCCC 59.876 44.000 0.00 0.00 0.00 3.97
1775 3808 5.705905 ACACTACAGCTTCCATTTTAGTTCC 59.294 40.000 0.00 0.00 0.00 3.62
1776 3809 6.426937 TGACACTACAGCTTCCATTTTAGTTC 59.573 38.462 0.00 0.00 0.00 3.01
1777 3810 6.296026 TGACACTACAGCTTCCATTTTAGTT 58.704 36.000 0.00 0.00 0.00 2.24
1778 3811 5.865085 TGACACTACAGCTTCCATTTTAGT 58.135 37.500 0.00 0.00 0.00 2.24
1782 3815 7.759489 TTTATTGACACTACAGCTTCCATTT 57.241 32.000 0.00 0.00 0.00 2.32
1783 3816 7.759489 TTTTATTGACACTACAGCTTCCATT 57.241 32.000 0.00 0.00 0.00 3.16
1784 3817 7.394359 ACATTTTATTGACACTACAGCTTCCAT 59.606 33.333 0.00 0.00 0.00 3.41
1785 3818 6.714810 ACATTTTATTGACACTACAGCTTCCA 59.285 34.615 0.00 0.00 0.00 3.53
1786 3819 7.145932 ACATTTTATTGACACTACAGCTTCC 57.854 36.000 0.00 0.00 0.00 3.46
1787 3820 8.289618 TGAACATTTTATTGACACTACAGCTTC 58.710 33.333 0.00 0.00 0.00 3.86
1790 3823 7.023575 CCTGAACATTTTATTGACACTACAGC 58.976 38.462 0.00 0.00 0.00 4.40
1816 4044 2.484264 GCCGCAAATATCCACCATAGTC 59.516 50.000 0.00 0.00 0.00 2.59
1829 4057 2.831526 AGTTCAAATTAGGGCCGCAAAT 59.168 40.909 0.00 0.00 0.00 2.32
2205 4446 5.269554 ACCTTCCCACCAATTCTGAATAA 57.730 39.130 2.85 0.00 0.00 1.40
2285 4526 2.979678 ACCAAGTCAGGGTGAAGTACAT 59.020 45.455 0.00 0.00 37.23 2.29
2488 4729 9.528018 CTACCAGAAGCTGTTTAATTTCAAAAA 57.472 29.630 0.00 0.00 0.00 1.94
2489 4730 7.651704 GCTACCAGAAGCTGTTTAATTTCAAAA 59.348 33.333 0.00 0.00 39.50 2.44
2540 4781 6.402226 CGTGGTTTCCTCTAAGAATTGTAAGC 60.402 42.308 0.00 0.00 0.00 3.09
2722 4963 4.168760 GCGCTGCTTTCATCACTTAAAAT 58.831 39.130 0.00 0.00 0.00 1.82
3030 5338 2.819608 TGTGGCTAAGAATTTGAGCACC 59.180 45.455 8.78 0.00 37.98 5.01
3069 5377 1.739466 ACATACAGCGTGGCAAGATTG 59.261 47.619 4.11 4.29 0.00 2.67
3081 5389 2.160219 CCACATGTCACACACATACAGC 59.840 50.000 0.00 0.00 44.60 4.40
3300 5608 7.435192 GCAATGCTATTTTAAGAAAACGCCTAT 59.565 33.333 0.00 0.00 32.39 2.57
3311 5619 8.619146 TGAATTCTTCGCAATGCTATTTTAAG 57.381 30.769 7.05 0.00 0.00 1.85
3443 6109 3.691118 GTCTCAACAGAAGCCAATGCATA 59.309 43.478 0.00 0.00 41.13 3.14
3468 6134 3.739830 GCATTTGGTAAAATTAGGCCCCG 60.740 47.826 0.00 0.00 33.59 5.73
3571 6240 2.489938 TCAGAAGTATGCACCCAACC 57.510 50.000 0.00 0.00 0.00 3.77
3692 6362 5.217978 TCAATGAAAAAGCTTGAATGGCT 57.782 34.783 0.00 0.00 42.31 4.75
3771 6441 6.636850 CCGATAAGCTTTATACAACAATTGCC 59.363 38.462 3.20 0.00 0.00 4.52
3794 6464 4.048504 TGATACATTGACGTCATAAGCCG 58.951 43.478 20.80 6.93 0.00 5.52
3865 6535 7.263496 AGGTTAAATAGTTCGGATGTGAGTAC 58.737 38.462 0.00 0.00 0.00 2.73
3891 6561 2.890311 CACTCCCATACCTGCAACAAAA 59.110 45.455 0.00 0.00 0.00 2.44
4099 6769 9.973450 CACTGAAACTATAGCACTACAGATAAT 57.027 33.333 14.99 0.00 0.00 1.28
4218 6888 9.349713 TGTGATGAAGTAAAACCAGAAACTATT 57.650 29.630 0.00 0.00 0.00 1.73
4238 6908 4.994907 AACCATGGTCATGATTGTGATG 57.005 40.909 20.07 0.00 41.20 3.07
4246 6916 3.577415 TGCAATGAAAACCATGGTCATGA 59.423 39.130 20.07 4.51 41.20 3.07
4424 7099 6.127897 ACACATTGGCAAGATTTCTAAGCTAC 60.128 38.462 5.96 0.00 0.00 3.58
4692 7387 7.056006 ACAGTATTTGTATGCTCATCAATCCA 58.944 34.615 0.00 0.00 38.56 3.41
4701 7396 9.846248 AGAAATTGAAACAGTATTTGTATGCTC 57.154 29.630 0.00 0.00 39.73 4.26
4849 7569 4.222145 ACTTCTTGGATACGGTCAAAGCTA 59.778 41.667 0.00 0.00 37.72 3.32
4850 7570 3.008049 ACTTCTTGGATACGGTCAAAGCT 59.992 43.478 3.11 0.00 37.72 3.74
4855 7575 1.829222 GGGACTTCTTGGATACGGTCA 59.171 52.381 0.00 0.00 42.51 4.02
4861 7581 3.024547 CTCGTGAGGGACTTCTTGGATA 58.975 50.000 0.00 0.00 41.55 2.59
4945 7665 3.192922 GTGTATCCGGCACCACGC 61.193 66.667 0.00 0.00 41.28 5.34
5348 8073 2.100584 ACTGAGCGATGGACAGAGAATC 59.899 50.000 0.00 0.00 35.85 2.52
5351 8076 1.474478 GAACTGAGCGATGGACAGAGA 59.526 52.381 0.00 0.00 35.85 3.10
5352 8077 1.476085 AGAACTGAGCGATGGACAGAG 59.524 52.381 0.00 0.00 35.85 3.35
5355 8080 1.550327 AGAGAACTGAGCGATGGACA 58.450 50.000 0.00 0.00 0.00 4.02
5356 8081 2.266554 CAAGAGAACTGAGCGATGGAC 58.733 52.381 0.00 0.00 0.00 4.02
5358 8083 1.005340 GCAAGAGAACTGAGCGATGG 58.995 55.000 0.00 0.00 0.00 3.51
5360 8085 1.274728 ACAGCAAGAGAACTGAGCGAT 59.725 47.619 0.00 0.00 37.35 4.58
5361 8086 0.676184 ACAGCAAGAGAACTGAGCGA 59.324 50.000 0.00 0.00 37.35 4.93
5362 8087 1.066914 GACAGCAAGAGAACTGAGCG 58.933 55.000 0.00 0.00 37.35 5.03
5363 8088 1.797635 GTGACAGCAAGAGAACTGAGC 59.202 52.381 0.00 0.00 37.35 4.26
5364 8089 2.411904 GGTGACAGCAAGAGAACTGAG 58.588 52.381 0.00 0.00 37.35 3.35
5375 8100 0.322648 CAGATCACAGGGTGACAGCA 59.677 55.000 7.01 0.00 45.65 4.41
5385 8111 4.800993 GTCAAGAATACGGACAGATCACAG 59.199 45.833 0.00 0.00 0.00 3.66
5417 8143 1.675483 TGCACAAGATCACAAAAGCGT 59.325 42.857 0.00 0.00 0.00 5.07
5550 8276 5.537295 TGCTGTCGGAATAACCTAAGCTATA 59.463 40.000 0.00 0.00 37.12 1.31
5611 8342 2.087501 ATTATGACCGCACGACAACA 57.912 45.000 0.00 0.00 0.00 3.33
5612 8343 3.465122 AAATTATGACCGCACGACAAC 57.535 42.857 0.00 0.00 0.00 3.32
5613 8344 4.491234 AAAAATTATGACCGCACGACAA 57.509 36.364 0.00 0.00 0.00 3.18
5635 8366 0.033504 GAGCGAGACCCAGAACAACA 59.966 55.000 0.00 0.00 0.00 3.33
5636 8367 0.670854 GGAGCGAGACCCAGAACAAC 60.671 60.000 0.00 0.00 0.00 3.32
5637 8368 1.671742 GGAGCGAGACCCAGAACAA 59.328 57.895 0.00 0.00 0.00 2.83
5638 8369 2.636412 CGGAGCGAGACCCAGAACA 61.636 63.158 0.00 0.00 0.00 3.18
5639 8370 2.156051 AACGGAGCGAGACCCAGAAC 62.156 60.000 0.00 0.00 0.00 3.01
5640 8371 1.469335 AAACGGAGCGAGACCCAGAA 61.469 55.000 0.00 0.00 0.00 3.02
5641 8372 1.469335 AAAACGGAGCGAGACCCAGA 61.469 55.000 0.00 0.00 0.00 3.86
5642 8373 1.004918 AAAACGGAGCGAGACCCAG 60.005 57.895 0.00 0.00 0.00 4.45
5662 10048 7.721399 AGACAGATTACAACAAAAGGAGTGAAT 59.279 33.333 0.00 0.00 0.00 2.57
5798 13663 5.036117 AGTTATTACAATGCCCATCGTCT 57.964 39.130 0.00 0.00 0.00 4.18
5807 13672 4.484236 TGCTGCACAAGTTATTACAATGC 58.516 39.130 0.00 0.00 32.45 3.56
5808 13673 5.702865 ACTGCTGCACAAGTTATTACAATG 58.297 37.500 0.00 0.00 0.00 2.82
5809 13674 5.964958 ACTGCTGCACAAGTTATTACAAT 57.035 34.783 0.00 0.00 0.00 2.71
5848 13748 9.965824 ATGAGATCGAAACTTGTTTAATTTGTT 57.034 25.926 0.00 0.00 0.00 2.83
5858 13758 4.437239 CCTGCTATGAGATCGAAACTTGT 58.563 43.478 0.00 0.00 0.00 3.16
5863 13763 3.493350 GCTTCCCTGCTATGAGATCGAAA 60.493 47.826 0.00 0.00 0.00 3.46
5866 13766 1.617850 AGCTTCCCTGCTATGAGATCG 59.382 52.381 0.00 0.00 42.10 3.69
5871 13771 2.775490 TCCTAGCTTCCCTGCTATGA 57.225 50.000 0.00 0.00 43.54 2.15
5877 13777 3.645212 TGAGATTGATCCTAGCTTCCCTG 59.355 47.826 0.00 0.00 0.00 4.45
5881 13781 5.384063 TCGATGAGATTGATCCTAGCTTC 57.616 43.478 0.00 0.00 0.00 3.86
5919 13833 3.126000 GGCTTCAATCTGTACAAGCTGAC 59.874 47.826 13.19 0.00 40.95 3.51
5931 13845 5.105997 GCTATTTCACAACAGGCTTCAATCT 60.106 40.000 0.00 0.00 0.00 2.40
5935 13849 3.485394 TGCTATTTCACAACAGGCTTCA 58.515 40.909 0.00 0.00 0.00 3.02
5936 13850 4.082571 ACATGCTATTTCACAACAGGCTTC 60.083 41.667 0.00 0.00 0.00 3.86
5938 13852 3.424703 ACATGCTATTTCACAACAGGCT 58.575 40.909 0.00 0.00 0.00 4.58
5939 13853 3.855689 ACATGCTATTTCACAACAGGC 57.144 42.857 0.00 0.00 0.00 4.85
5940 13854 7.537715 TCAAATACATGCTATTTCACAACAGG 58.462 34.615 9.12 0.00 0.00 4.00
5941 13855 8.969121 TTCAAATACATGCTATTTCACAACAG 57.031 30.769 9.12 1.11 0.00 3.16
5942 13856 7.541783 GCTTCAAATACATGCTATTTCACAACA 59.458 33.333 9.12 0.00 0.00 3.33
5943 13857 7.009540 GGCTTCAAATACATGCTATTTCACAAC 59.990 37.037 9.12 2.34 0.00 3.32
5944 13858 7.035004 GGCTTCAAATACATGCTATTTCACAA 58.965 34.615 9.12 4.61 0.00 3.33
5945 13859 6.377996 AGGCTTCAAATACATGCTATTTCACA 59.622 34.615 9.12 0.00 0.00 3.58
5946 13860 6.799512 AGGCTTCAAATACATGCTATTTCAC 58.200 36.000 9.12 2.79 0.00 3.18
5947 13861 7.093814 ACAAGGCTTCAAATACATGCTATTTCA 60.094 33.333 0.00 0.00 0.00 2.69
5948 13862 7.260603 ACAAGGCTTCAAATACATGCTATTTC 58.739 34.615 0.00 2.04 0.00 2.17
5949 13863 7.174107 ACAAGGCTTCAAATACATGCTATTT 57.826 32.000 0.00 0.27 0.00 1.40
5950 13864 6.780457 ACAAGGCTTCAAATACATGCTATT 57.220 33.333 0.00 0.00 0.00 1.73
5951 13865 6.780457 AACAAGGCTTCAAATACATGCTAT 57.220 33.333 0.00 0.00 0.00 2.97
5952 13866 6.657117 TGTAACAAGGCTTCAAATACATGCTA 59.343 34.615 0.00 0.00 0.00 3.49
5953 13867 5.476599 TGTAACAAGGCTTCAAATACATGCT 59.523 36.000 0.00 0.00 0.00 3.79
5954 13868 5.708948 TGTAACAAGGCTTCAAATACATGC 58.291 37.500 0.00 0.00 0.00 4.06
5955 13869 7.144722 TCTGTAACAAGGCTTCAAATACATG 57.855 36.000 0.00 0.00 0.00 3.21
5956 13870 7.831193 AGATCTGTAACAAGGCTTCAAATACAT 59.169 33.333 0.00 0.00 0.00 2.29
5957 13871 7.119699 CAGATCTGTAACAAGGCTTCAAATACA 59.880 37.037 14.95 4.02 0.00 2.29
5958 13872 7.119846 ACAGATCTGTAACAAGGCTTCAAATAC 59.880 37.037 26.87 0.00 42.90 1.89
5959 13873 7.168219 ACAGATCTGTAACAAGGCTTCAAATA 58.832 34.615 26.87 0.00 42.90 1.40
5960 13874 6.006449 ACAGATCTGTAACAAGGCTTCAAAT 58.994 36.000 26.87 0.00 42.90 2.32
5961 13875 5.376625 ACAGATCTGTAACAAGGCTTCAAA 58.623 37.500 26.87 0.00 42.90 2.69
5962 13876 4.973168 ACAGATCTGTAACAAGGCTTCAA 58.027 39.130 26.87 0.00 42.90 2.69
5963 13877 4.569943 GACAGATCTGTAACAAGGCTTCA 58.430 43.478 27.95 0.00 45.05 3.02
5964 13878 3.614616 CGACAGATCTGTAACAAGGCTTC 59.385 47.826 27.95 10.63 45.05 3.86
5965 13879 3.006967 ACGACAGATCTGTAACAAGGCTT 59.993 43.478 27.95 5.07 45.05 4.35
5966 13880 2.563179 ACGACAGATCTGTAACAAGGCT 59.437 45.455 27.95 2.09 45.05 4.58
5967 13881 2.960819 ACGACAGATCTGTAACAAGGC 58.039 47.619 27.95 12.74 45.05 4.35
5968 13882 3.679980 CCAACGACAGATCTGTAACAAGG 59.320 47.826 27.95 20.39 45.05 3.61
5969 13883 4.307432 ACCAACGACAGATCTGTAACAAG 58.693 43.478 27.95 18.23 45.05 3.16
5970 13884 4.330944 ACCAACGACAGATCTGTAACAA 57.669 40.909 27.95 0.00 45.05 2.83
5971 13885 4.330944 AACCAACGACAGATCTGTAACA 57.669 40.909 27.95 0.00 45.05 2.41
5972 13886 4.989168 AGAAACCAACGACAGATCTGTAAC 59.011 41.667 27.95 15.59 45.05 2.50
5973 13887 5.209818 AGAAACCAACGACAGATCTGTAA 57.790 39.130 27.95 0.00 45.05 2.41
5974 13888 4.866508 AGAAACCAACGACAGATCTGTA 57.133 40.909 27.95 0.00 45.05 2.74
5976 13890 4.310769 AGAAGAAACCAACGACAGATCTG 58.689 43.478 21.37 21.37 0.00 2.90
5977 13891 4.282195 AGAGAAGAAACCAACGACAGATCT 59.718 41.667 0.00 0.00 0.00 2.75
5978 13892 4.561105 AGAGAAGAAACCAACGACAGATC 58.439 43.478 0.00 0.00 0.00 2.75
5979 13893 4.608948 AGAGAAGAAACCAACGACAGAT 57.391 40.909 0.00 0.00 0.00 2.90
5980 13894 5.723672 ATAGAGAAGAAACCAACGACAGA 57.276 39.130 0.00 0.00 0.00 3.41
5984 13898 9.496873 TCAAATTAATAGAGAAGAAACCAACGA 57.503 29.630 0.00 0.00 0.00 3.85
5996 13910 6.179756 TGCACAGGCTTCAAATTAATAGAGA 58.820 36.000 0.00 0.00 41.91 3.10
5997 13911 6.441093 TGCACAGGCTTCAAATTAATAGAG 57.559 37.500 0.00 0.00 41.91 2.43
6027 14035 4.217159 ATAAGACGACCGGCCGGC 62.217 66.667 43.58 32.39 39.32 6.13
6028 14036 2.027169 GATAAGACGACCGGCCGG 59.973 66.667 42.17 42.17 42.03 6.13
6030 14038 2.027169 CGGATAAGACGACCGGCC 59.973 66.667 0.00 0.00 42.48 6.13
6033 14041 0.590732 CGTTCCGGATAAGACGACCG 60.591 60.000 19.25 0.00 45.24 4.79
6034 14042 0.734889 TCGTTCCGGATAAGACGACC 59.265 55.000 21.86 0.00 39.33 4.79
6039 14047 1.434696 GGCGTCGTTCCGGATAAGA 59.565 57.895 4.15 1.91 0.00 2.10
6042 14056 4.557605 GCGGCGTCGTTCCGGATA 62.558 66.667 12.58 0.00 46.51 2.59
6066 14080 4.828296 GGCCAGCCAGGGACCATG 62.828 72.222 3.12 0.00 38.09 3.66
6069 14083 3.984732 AAAGGCCAGCCAGGGACC 61.985 66.667 12.03 0.00 36.18 4.46
6070 14084 2.505364 ATCAAAGGCCAGCCAGGGAC 62.505 60.000 12.03 0.00 38.92 4.46
6073 14087 2.718073 GCATCAAAGGCCAGCCAGG 61.718 63.158 12.03 0.00 38.92 4.45
6081 14095 1.448893 TACCGACGGCATCAAAGGC 60.449 57.895 15.39 0.00 0.00 4.35
6082 14096 1.087771 GGTACCGACGGCATCAAAGG 61.088 60.000 15.39 0.00 0.00 3.11
6084 14098 1.446445 CGGTACCGACGGCATCAAA 60.446 57.895 30.64 0.00 42.83 2.69
6085 14099 2.182284 CGGTACCGACGGCATCAA 59.818 61.111 30.64 0.00 42.83 2.57
6111 14125 3.995705 ACAGTATATCCTCGCTAGTCGTC 59.004 47.826 6.49 0.00 39.67 4.20
6112 14126 4.005487 ACAGTATATCCTCGCTAGTCGT 57.995 45.455 6.49 0.00 39.67 4.34
6113 14127 5.170021 ACTACAGTATATCCTCGCTAGTCG 58.830 45.833 0.00 0.00 40.15 4.18
6114 14128 7.322664 AGTACTACAGTATATCCTCGCTAGTC 58.677 42.308 0.00 0.00 32.54 2.59
6115 14129 7.243604 AGTACTACAGTATATCCTCGCTAGT 57.756 40.000 0.00 0.00 32.54 2.57
6116 14130 8.469200 ACTAGTACTACAGTATATCCTCGCTAG 58.531 40.741 0.00 0.00 32.54 3.42
6117 14131 8.359875 ACTAGTACTACAGTATATCCTCGCTA 57.640 38.462 0.00 0.00 32.54 4.26
6118 14132 7.243604 ACTAGTACTACAGTATATCCTCGCT 57.756 40.000 0.00 0.00 32.54 4.93
6127 14141 9.163894 TGGTCCTACATACTAGTACTACAGTAT 57.836 37.037 4.31 11.13 38.26 2.12
6129 14143 7.443302 TGGTCCTACATACTAGTACTACAGT 57.557 40.000 4.31 0.68 0.00 3.55
6130 14144 6.427547 GCTGGTCCTACATACTAGTACTACAG 59.572 46.154 4.31 6.74 0.00 2.74
6131 14145 6.126681 TGCTGGTCCTACATACTAGTACTACA 60.127 42.308 4.31 0.00 0.00 2.74
6132 14146 6.204495 GTGCTGGTCCTACATACTAGTACTAC 59.796 46.154 4.31 0.00 37.81 2.73
6134 14148 5.131784 GTGCTGGTCCTACATACTAGTACT 58.868 45.833 4.31 0.00 37.81 2.73
6136 14150 5.120054 TGTGCTGGTCCTACATACTAGTA 57.880 43.478 4.77 4.77 0.00 1.82
6137 14151 3.954904 CTGTGCTGGTCCTACATACTAGT 59.045 47.826 0.00 0.00 0.00 2.57
6139 14153 3.296854 CCTGTGCTGGTCCTACATACTA 58.703 50.000 0.00 0.00 0.00 1.82
6140 14154 2.111384 CCTGTGCTGGTCCTACATACT 58.889 52.381 0.00 0.00 0.00 2.12
6142 14156 0.830648 GCCTGTGCTGGTCCTACATA 59.169 55.000 0.00 0.00 33.53 2.29
6144 14158 1.414866 TTGCCTGTGCTGGTCCTACA 61.415 55.000 0.00 0.00 38.71 2.74
6145 14159 0.674895 CTTGCCTGTGCTGGTCCTAC 60.675 60.000 0.00 0.00 38.71 3.18
6146 14160 1.679311 CTTGCCTGTGCTGGTCCTA 59.321 57.895 0.00 0.00 38.71 2.94
6147 14161 2.433446 CTTGCCTGTGCTGGTCCT 59.567 61.111 0.00 0.00 38.71 3.85
6148 14162 2.674380 CCTTGCCTGTGCTGGTCC 60.674 66.667 0.00 0.00 38.71 4.46
6150 14164 4.208403 TGCCTTGCCTGTGCTGGT 62.208 61.111 0.00 0.00 38.71 4.00
6151 14165 3.371063 CTGCCTTGCCTGTGCTGG 61.371 66.667 0.00 0.00 38.71 4.85
6152 14166 3.371063 CCTGCCTTGCCTGTGCTG 61.371 66.667 0.00 0.00 38.71 4.41
6153 14167 4.673375 CCCTGCCTTGCCTGTGCT 62.673 66.667 0.00 0.00 38.71 4.40
6154 14168 4.666253 TCCCTGCCTTGCCTGTGC 62.666 66.667 0.00 0.00 38.26 4.57
6155 14169 1.304713 ATTCCCTGCCTTGCCTGTG 60.305 57.895 0.00 0.00 0.00 3.66
6157 14171 2.718073 GCATTCCCTGCCTTGCCTG 61.718 63.158 0.00 0.00 45.66 4.85
6158 14172 2.363406 GCATTCCCTGCCTTGCCT 60.363 61.111 0.00 0.00 45.66 4.75
6211 14231 2.037527 GTCTCGTCAGGGGGAGGT 59.962 66.667 0.00 0.00 33.18 3.85
6215 14235 3.077556 CAGGGTCTCGTCAGGGGG 61.078 72.222 0.00 0.00 0.00 5.40
6216 14236 2.283966 ACAGGGTCTCGTCAGGGG 60.284 66.667 0.00 0.00 0.00 4.79
6218 14238 1.587054 GTCACAGGGTCTCGTCAGG 59.413 63.158 0.00 0.00 0.00 3.86
6219 14239 1.587054 GGTCACAGGGTCTCGTCAG 59.413 63.158 0.00 0.00 0.00 3.51
6220 14240 2.265904 CGGTCACAGGGTCTCGTCA 61.266 63.158 0.00 0.00 0.00 4.35
6221 14241 2.266627 ACGGTCACAGGGTCTCGTC 61.267 63.158 0.00 0.00 0.00 4.20
6222 14242 2.203451 ACGGTCACAGGGTCTCGT 60.203 61.111 0.00 0.00 0.00 4.18
6225 14245 1.152525 ACTCACGGTCACAGGGTCT 60.153 57.895 0.00 0.00 0.00 3.85
6226 14246 1.006102 CACTCACGGTCACAGGGTC 60.006 63.158 0.00 0.00 0.00 4.46
6227 14247 1.456892 TCACTCACGGTCACAGGGT 60.457 57.895 0.00 0.00 0.00 4.34
6228 14248 1.006102 GTCACTCACGGTCACAGGG 60.006 63.158 0.00 0.00 0.00 4.45
6229 14249 1.371758 CGTCACTCACGGTCACAGG 60.372 63.158 0.00 0.00 45.46 4.00
6230 14250 4.228451 CGTCACTCACGGTCACAG 57.772 61.111 0.00 0.00 45.46 3.66
6252 14272 1.019278 TTCGCAAGGCTTGTCGATCC 61.019 55.000 31.64 15.62 38.35 3.36
6256 14276 1.781025 TTGGTTCGCAAGGCTTGTCG 61.781 55.000 26.71 26.78 38.47 4.35
6287 14307 2.104967 CTGTGAATGGAATGGTGGCAT 58.895 47.619 0.00 0.00 0.00 4.40
6301 14321 2.103094 CTGTCAGTGTCTTCCCTGTGAA 59.897 50.000 0.00 0.00 0.00 3.18
6333 14353 2.228103 CTCTGTGGTAACTGTGCTCGTA 59.772 50.000 0.00 0.00 37.61 3.43
6360 14380 2.814336 GTTGAAGGTTCTCATCGGCTTT 59.186 45.455 0.00 0.00 0.00 3.51
6365 14385 2.090658 CGTTCGTTGAAGGTTCTCATCG 59.909 50.000 0.00 0.00 39.02 3.84
6368 14388 2.466846 GACGTTCGTTGAAGGTTCTCA 58.533 47.619 6.37 0.00 40.09 3.27
6375 14395 1.699343 GAGAGGGACGTTCGTTGAAG 58.301 55.000 0.00 0.00 0.00 3.02
6376 14396 0.039798 CGAGAGGGACGTTCGTTGAA 60.040 55.000 0.00 0.00 35.16 2.69
6378 14398 2.087009 GCGAGAGGGACGTTCGTTG 61.087 63.158 8.24 0.00 40.18 4.10
6379 14399 2.257676 GCGAGAGGGACGTTCGTT 59.742 61.111 8.24 0.00 40.18 3.85
6380 14400 2.981909 TGCGAGAGGGACGTTCGT 60.982 61.111 8.24 0.00 40.18 3.85
6381 14401 2.504244 GTGCGAGAGGGACGTTCG 60.504 66.667 2.30 2.30 40.77 3.95
6382 14402 1.444553 CTGTGCGAGAGGGACGTTC 60.445 63.158 0.00 0.00 40.35 3.95
6383 14403 1.867919 CTCTGTGCGAGAGGGACGTT 61.868 60.000 4.91 0.00 44.25 3.99
6385 14405 2.487428 CTCTGTGCGAGAGGGACG 59.513 66.667 4.91 0.00 44.25 4.79
6391 14411 1.967535 CAGAACCCTCTGTGCGAGA 59.032 57.895 0.00 0.00 43.64 4.04
6392 14412 4.586618 CAGAACCCTCTGTGCGAG 57.413 61.111 0.00 0.00 43.64 5.03
6395 14415 6.000147 ATCGTAGATCAGAACCCTCTGTGC 62.000 50.000 0.00 0.00 44.25 4.57
6397 14417 3.634448 CATCGTAGATCAGAACCCTCTGT 59.366 47.826 0.00 0.00 44.25 3.41
6398 14418 3.885901 TCATCGTAGATCAGAACCCTCTG 59.114 47.826 0.00 0.00 44.87 3.35
6400 14420 4.138290 TCTCATCGTAGATCAGAACCCTC 58.862 47.826 0.00 0.00 45.12 4.30
6401 14421 4.171878 TCTCATCGTAGATCAGAACCCT 57.828 45.455 0.00 0.00 45.12 4.34
6402 14422 4.920640 TTCTCATCGTAGATCAGAACCC 57.079 45.455 0.00 0.00 45.12 4.11
6403 14423 9.944663 GATATATTCTCATCGTAGATCAGAACC 57.055 37.037 0.00 0.00 45.12 3.62
6406 14426 9.898152 ACTGATATATTCTCATCGTAGATCAGA 57.102 33.333 17.88 0.00 42.47 3.27
6407 14427 9.934190 CACTGATATATTCTCATCGTAGATCAG 57.066 37.037 12.22 12.22 44.06 2.90
6408 14428 8.897752 CCACTGATATATTCTCATCGTAGATCA 58.102 37.037 0.00 0.00 45.12 2.92
6409 14429 9.114952 TCCACTGATATATTCTCATCGTAGATC 57.885 37.037 0.00 0.00 45.12 2.75
6410 14430 9.639563 ATCCACTGATATATTCTCATCGTAGAT 57.360 33.333 0.00 0.00 45.12 1.98
6411 14431 9.467796 AATCCACTGATATATTCTCATCGTAGA 57.532 33.333 0.00 0.00 45.75 2.59
6413 14433 9.025041 ACAATCCACTGATATATTCTCATCGTA 57.975 33.333 0.00 0.00 0.00 3.43
6414 14434 7.901029 ACAATCCACTGATATATTCTCATCGT 58.099 34.615 0.00 0.00 0.00 3.73
6415 14435 8.654215 CAACAATCCACTGATATATTCTCATCG 58.346 37.037 0.00 0.00 0.00 3.84
6416 14436 8.944029 CCAACAATCCACTGATATATTCTCATC 58.056 37.037 0.00 0.00 0.00 2.92
6417 14437 8.663167 TCCAACAATCCACTGATATATTCTCAT 58.337 33.333 0.00 0.00 0.00 2.90
6419 14439 7.118971 GCTCCAACAATCCACTGATATATTCTC 59.881 40.741 0.00 0.00 0.00 2.87
6420 14440 6.939163 GCTCCAACAATCCACTGATATATTCT 59.061 38.462 0.00 0.00 0.00 2.40
6421 14441 6.128445 CGCTCCAACAATCCACTGATATATTC 60.128 42.308 0.00 0.00 0.00 1.75
6422 14442 5.702670 CGCTCCAACAATCCACTGATATATT 59.297 40.000 0.00 0.00 0.00 1.28
6423 14443 5.240891 CGCTCCAACAATCCACTGATATAT 58.759 41.667 0.00 0.00 0.00 0.86
6424 14444 4.631131 CGCTCCAACAATCCACTGATATA 58.369 43.478 0.00 0.00 0.00 0.86
6425 14445 3.470709 CGCTCCAACAATCCACTGATAT 58.529 45.455 0.00 0.00 0.00 1.63
6448 14476 6.323996 TCCACTGTAGATCGATGGATAGTTTT 59.676 38.462 0.54 0.00 34.50 2.43
6459 14487 6.602009 TGAAATAGAACTCCACTGTAGATCGA 59.398 38.462 0.00 0.00 0.00 3.59
6468 14496 5.178797 CGTTGGATGAAATAGAACTCCACT 58.821 41.667 0.00 0.00 35.79 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.