Multiple sequence alignment - TraesCS5D01G278300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G278300 chr5D 100.000 3059 0 0 1 3059 380078055 380074997 0.000000e+00 5650.0
1 TraesCS5D01G278300 chr5B 91.052 1587 100 17 1359 2929 455839127 455837567 0.000000e+00 2106.0
2 TraesCS5D01G278300 chr5B 92.163 1225 65 17 1 1199 455978826 455977607 0.000000e+00 1701.0
3 TraesCS5D01G278300 chr5B 90.608 1118 62 19 131 1225 455840360 455839263 0.000000e+00 1443.0
4 TraesCS5D01G278300 chr5B 93.179 777 49 1 1370 2142 455977539 455976763 0.000000e+00 1138.0
5 TraesCS5D01G278300 chr5B 85.075 603 70 13 2466 3059 455832930 455832339 5.650000e-167 597.0
6 TraesCS5D01G278300 chr5B 87.266 534 54 11 2486 3008 455834126 455833596 5.650000e-167 597.0
7 TraesCS5D01G278300 chr5B 86.753 385 37 8 2619 3003 455904273 455903903 1.700000e-112 416.0
8 TraesCS5D01G278300 chr5B 82.558 516 37 22 2084 2575 455968608 455968122 3.670000e-109 405.0
9 TraesCS5D01G278300 chr5B 91.429 70 6 0 2019 2088 455974466 455974397 2.510000e-16 97.1
10 TraesCS5D01G278300 chr5B 85.965 57 3 3 2742 2795 620007805 620007859 4.260000e-04 56.5
11 TraesCS5D01G278300 chr5A 93.392 1241 54 8 2 1216 480515176 480513938 0.000000e+00 1812.0
12 TraesCS5D01G278300 chr5A 90.173 1038 77 17 1289 2308 480513093 480512063 0.000000e+00 1328.0
13 TraesCS5D01G278300 chr5A 90.674 697 54 5 2373 3059 480511104 480510409 0.000000e+00 917.0
14 TraesCS5D01G278300 chr5A 79.006 181 22 11 2100 2267 480511844 480511667 3.220000e-20 110.0
15 TraesCS5D01G278300 chr3D 77.778 153 27 6 1716 1863 48250956 48250806 1.510000e-13 87.9
16 TraesCS5D01G278300 chr3D 90.000 70 4 3 2919 2986 501308169 501308101 1.510000e-13 87.9
17 TraesCS5D01G278300 chr3D 91.525 59 5 0 1802 1860 48350064 48350122 7.030000e-12 82.4
18 TraesCS5D01G278300 chr3A 77.632 152 29 5 1716 1863 60441674 60441524 1.510000e-13 87.9
19 TraesCS5D01G278300 chr3A 87.500 72 6 3 2916 2985 640841305 640841235 2.530000e-11 80.5
20 TraesCS5D01G278300 chr3A 76.351 148 32 3 1716 1860 60472807 60472954 3.270000e-10 76.8
21 TraesCS5D01G278300 chr3A 86.364 66 6 3 567 630 724009075 724009011 5.470000e-08 69.4
22 TraesCS5D01G278300 chr2A 96.154 52 2 0 2916 2967 112755507 112755558 5.430000e-13 86.1
23 TraesCS5D01G278300 chr2A 97.778 45 1 0 2925 2969 8020391 8020347 9.090000e-11 78.7
24 TraesCS5D01G278300 chr3B 77.551 147 28 4 1718 1860 76116376 76116521 1.950000e-12 84.2
25 TraesCS5D01G278300 chr3B 76.974 152 30 5 1716 1863 75957002 75956852 7.030000e-12 82.4
26 TraesCS5D01G278300 chrUn 97.778 45 1 0 2925 2969 335084268 335084312 9.090000e-11 78.7
27 TraesCS5D01G278300 chr2D 94.118 51 2 1 2917 2967 419022568 419022617 3.270000e-10 76.8
28 TraesCS5D01G278300 chr6A 89.655 58 3 3 2913 2968 497985473 497985529 1.520000e-08 71.3
29 TraesCS5D01G278300 chr4A 90.566 53 3 1 1242 1292 60017870 60017818 5.470000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G278300 chr5D 380074997 380078055 3058 True 5650.00 5650 100.00000 1 3059 1 chr5D.!!$R1 3058
1 TraesCS5D01G278300 chr5B 455832339 455840360 8021 True 1185.75 2106 88.50025 131 3059 4 chr5B.!!$R3 2928
2 TraesCS5D01G278300 chr5B 455974397 455978826 4429 True 978.70 1701 92.25700 1 2142 3 chr5B.!!$R4 2141
3 TraesCS5D01G278300 chr5A 480510409 480515176 4767 True 1041.75 1812 88.31125 2 3059 4 chr5A.!!$R1 3057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
193 212 0.170339 TGACGAGTCTACACGGCATG 59.830 55.0 4.31 0.0 42.73 4.06 F
1483 2405 0.454600 GTCAACGATAGAGTGGGCGA 59.545 55.0 0.00 0.0 41.38 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1677 2599 0.322098 CCGGAATTGTGTAGCCACCA 60.322 55.0 0.00 0.0 41.09 4.17 R
2663 10139 0.328450 AATGGGTGGCCTCTGGGATA 60.328 55.0 3.32 0.0 33.58 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.136800 TGCATGGTTAACAGCTATAATTCAATG 58.863 33.333 8.10 0.00 0.00 2.82
32 33 7.555914 TGGTTAACAGCTATAATTCAATGCTCA 59.444 33.333 8.10 0.00 0.00 4.26
39 41 7.697710 CAGCTATAATTCAATGCTCACGAAAAA 59.302 33.333 0.00 0.00 0.00 1.94
70 72 8.342634 GCTATAATTCAATTCAAAGCCGTCTAA 58.657 33.333 0.00 0.00 0.00 2.10
193 212 0.170339 TGACGAGTCTACACGGCATG 59.830 55.000 4.31 0.00 42.73 4.06
194 213 1.140407 GACGAGTCTACACGGCATGC 61.140 60.000 9.90 9.90 37.89 4.06
195 214 1.153842 CGAGTCTACACGGCATGCA 60.154 57.895 21.36 0.00 0.00 3.96
196 215 0.528466 CGAGTCTACACGGCATGCAT 60.528 55.000 21.36 3.56 0.00 3.96
804 846 0.956410 CACGTCGTCTCCTGGAGAGT 60.956 60.000 26.28 17.25 43.71 3.24
817 859 1.359475 GAGAGTATCGCCCGACACC 59.641 63.158 0.00 0.00 42.67 4.16
818 860 2.073037 GAGAGTATCGCCCGACACCC 62.073 65.000 0.00 0.00 42.67 4.61
863 905 2.669133 CCATGGTCGAGGCCCTCAA 61.669 63.158 12.13 0.00 0.00 3.02
868 910 2.922503 TCGAGGCCCTCAACAGCA 60.923 61.111 12.13 0.00 0.00 4.41
1061 1103 1.329906 GCTGCTCGAAGACATCATTGG 59.670 52.381 0.00 0.00 0.00 3.16
1071 1113 0.611618 ACATCATTGGGGAGCGCAAA 60.612 50.000 11.47 0.00 39.57 3.68
1104 1152 3.582208 AGAAGAAGATGAAGGACACAGCT 59.418 43.478 0.00 0.00 35.48 4.24
1140 1188 1.447838 GCTTCTCGACGCCATGGAA 60.448 57.895 18.40 0.00 0.00 3.53
1235 2103 1.061570 CACTACGACGTACGCCCTC 59.938 63.158 16.72 4.61 46.94 4.30
1246 2114 4.208686 CGCCCTCCGTGCTACTCC 62.209 72.222 0.00 0.00 0.00 3.85
1247 2115 3.851128 GCCCTCCGTGCTACTCCC 61.851 72.222 0.00 0.00 0.00 4.30
1248 2116 2.042843 CCCTCCGTGCTACTCCCT 60.043 66.667 0.00 0.00 0.00 4.20
1249 2117 2.128507 CCCTCCGTGCTACTCCCTC 61.129 68.421 0.00 0.00 0.00 4.30
1250 2118 2.128507 CCTCCGTGCTACTCCCTCC 61.129 68.421 0.00 0.00 0.00 4.30
1251 2119 2.439701 TCCGTGCTACTCCCTCCG 60.440 66.667 0.00 0.00 0.00 4.63
1252 2120 2.754658 CCGTGCTACTCCCTCCGT 60.755 66.667 0.00 0.00 0.00 4.69
1253 2121 1.452651 CCGTGCTACTCCCTCCGTA 60.453 63.158 0.00 0.00 0.00 4.02
1254 2122 1.033746 CCGTGCTACTCCCTCCGTAA 61.034 60.000 0.00 0.00 0.00 3.18
1255 2123 0.813184 CGTGCTACTCCCTCCGTAAA 59.187 55.000 0.00 0.00 0.00 2.01
1256 2124 1.202268 CGTGCTACTCCCTCCGTAAAG 60.202 57.143 0.00 0.00 0.00 1.85
1257 2125 2.097825 GTGCTACTCCCTCCGTAAAGA 58.902 52.381 0.00 0.00 0.00 2.52
1258 2126 2.494870 GTGCTACTCCCTCCGTAAAGAA 59.505 50.000 0.00 0.00 0.00 2.52
1259 2127 3.056322 GTGCTACTCCCTCCGTAAAGAAA 60.056 47.826 0.00 0.00 0.00 2.52
1260 2128 3.194968 TGCTACTCCCTCCGTAAAGAAAG 59.805 47.826 0.00 0.00 0.00 2.62
1261 2129 3.446516 GCTACTCCCTCCGTAAAGAAAGA 59.553 47.826 0.00 0.00 0.00 2.52
1262 2130 4.099727 GCTACTCCCTCCGTAAAGAAAGAT 59.900 45.833 0.00 0.00 0.00 2.40
1263 2131 5.301298 GCTACTCCCTCCGTAAAGAAAGATA 59.699 44.000 0.00 0.00 0.00 1.98
1264 2132 6.183360 GCTACTCCCTCCGTAAAGAAAGATAA 60.183 42.308 0.00 0.00 0.00 1.75
1265 2133 6.223351 ACTCCCTCCGTAAAGAAAGATAAG 57.777 41.667 0.00 0.00 0.00 1.73
1266 2134 5.019785 TCCCTCCGTAAAGAAAGATAAGC 57.980 43.478 0.00 0.00 0.00 3.09
1267 2135 3.802685 CCCTCCGTAAAGAAAGATAAGCG 59.197 47.826 0.00 0.00 0.00 4.68
1268 2136 4.430908 CCTCCGTAAAGAAAGATAAGCGT 58.569 43.478 0.00 0.00 0.00 5.07
1269 2137 4.868734 CCTCCGTAAAGAAAGATAAGCGTT 59.131 41.667 0.00 0.00 0.00 4.84
1270 2138 5.350640 CCTCCGTAAAGAAAGATAAGCGTTT 59.649 40.000 0.00 0.00 0.00 3.60
1271 2139 6.532657 CCTCCGTAAAGAAAGATAAGCGTTTA 59.467 38.462 0.00 0.00 0.00 2.01
1272 2140 7.254017 CCTCCGTAAAGAAAGATAAGCGTTTAG 60.254 40.741 0.00 0.00 0.00 1.85
1273 2141 7.315142 TCCGTAAAGAAAGATAAGCGTTTAGA 58.685 34.615 0.00 0.00 0.00 2.10
1274 2142 7.977853 TCCGTAAAGAAAGATAAGCGTTTAGAT 59.022 33.333 0.00 0.00 0.00 1.98
1275 2143 8.267367 CCGTAAAGAAAGATAAGCGTTTAGATC 58.733 37.037 0.00 0.00 0.00 2.75
1276 2144 8.804743 CGTAAAGAAAGATAAGCGTTTAGATCA 58.195 33.333 0.00 0.00 0.00 2.92
1278 2146 8.779354 AAAGAAAGATAAGCGTTTAGATCAGT 57.221 30.769 0.00 0.00 0.00 3.41
1279 2147 9.871238 AAAGAAAGATAAGCGTTTAGATCAGTA 57.129 29.630 0.00 0.00 0.00 2.74
1280 2148 9.522804 AAGAAAGATAAGCGTTTAGATCAGTAG 57.477 33.333 0.00 0.00 0.00 2.57
1281 2149 8.904834 AGAAAGATAAGCGTTTAGATCAGTAGA 58.095 33.333 0.00 0.00 0.00 2.59
1282 2150 9.176181 GAAAGATAAGCGTTTAGATCAGTAGAG 57.824 37.037 0.00 0.00 0.00 2.43
1283 2151 7.209471 AGATAAGCGTTTAGATCAGTAGAGG 57.791 40.000 0.00 0.00 0.00 3.69
1284 2152 4.657436 AAGCGTTTAGATCAGTAGAGGG 57.343 45.455 0.00 0.00 0.00 4.30
1285 2153 3.899726 AGCGTTTAGATCAGTAGAGGGA 58.100 45.455 0.00 0.00 0.00 4.20
1286 2154 3.886505 AGCGTTTAGATCAGTAGAGGGAG 59.113 47.826 0.00 0.00 0.00 4.30
1287 2155 3.633065 GCGTTTAGATCAGTAGAGGGAGT 59.367 47.826 0.00 0.00 0.00 3.85
1329 2200 7.112528 TGTAAGCTATTGTAGTGTCAAAACG 57.887 36.000 0.00 0.00 0.00 3.60
1330 2201 5.607119 AAGCTATTGTAGTGTCAAAACGG 57.393 39.130 0.00 0.00 0.00 4.44
1331 2202 4.638304 AGCTATTGTAGTGTCAAAACGGT 58.362 39.130 0.00 0.00 0.00 4.83
1338 2209 7.642071 TTGTAGTGTCAAAACGGTCTTATAC 57.358 36.000 0.00 0.00 0.00 1.47
1344 2215 9.962783 AGTGTCAAAACGGTCTTATACTATATC 57.037 33.333 0.00 0.00 0.00 1.63
1352 2223 8.199176 ACGGTCTTATACTATATCATGAGACG 57.801 38.462 0.09 0.00 38.18 4.18
1381 2299 9.597170 AAGAGTAGAAAGGAATTATTAACCGTC 57.403 33.333 0.00 0.00 0.00 4.79
1483 2405 0.454600 GTCAACGATAGAGTGGGCGA 59.545 55.000 0.00 0.00 41.38 5.54
1494 2416 2.833121 TGGGCGATCGCAGAGCTA 60.833 61.111 38.00 18.23 43.00 3.32
1549 2471 1.880027 ACGAGGTGAGGACAAAAATGC 59.120 47.619 0.00 0.00 0.00 3.56
1551 2473 2.095567 CGAGGTGAGGACAAAAATGCAG 60.096 50.000 0.00 0.00 0.00 4.41
1645 2567 2.731571 ATGCCGGCGCCTCTTCTAA 61.732 57.895 26.68 0.00 0.00 2.10
1677 2599 1.302033 CAAGGAGCAGTGCCGTCTT 60.302 57.895 12.58 10.23 0.00 3.01
1732 2654 3.620419 ATCAACGCGTGGGCCATGA 62.620 57.895 29.62 19.10 35.52 3.07
1742 2664 3.731728 GGCCATGAGCAGGGACCA 61.732 66.667 5.21 0.00 46.50 4.02
1743 2665 2.356278 GCCATGAGCAGGGACCAA 59.644 61.111 5.21 0.00 42.97 3.67
2149 4630 7.148289 GCCTTCTTTAGTGTTGTAATACCCTTC 60.148 40.741 0.00 0.00 0.00 3.46
2318 5897 6.037172 GTCCAACGACAACATAGAATAATGCT 59.963 38.462 0.00 0.00 38.99 3.79
2322 5901 4.319766 CGACAACATAGAATAATGCTGCCC 60.320 45.833 0.00 0.00 0.00 5.36
2350 5929 0.034283 TGTGCAGCTCATATGGCCAA 60.034 50.000 10.96 0.00 0.00 4.52
2356 5935 3.613432 GCAGCTCATATGGCCAAAATAGC 60.613 47.826 10.96 17.13 0.00 2.97
2368 5947 4.491676 GCCAAAATAGCGATACTCGGATA 58.508 43.478 0.00 0.00 40.84 2.59
2427 6006 3.071479 GTGGTGAGACGGATAAAGCAAA 58.929 45.455 0.00 0.00 0.00 3.68
2499 7547 4.806247 CAGATAGTGAAATTGTCGGTCCTC 59.194 45.833 0.00 0.00 0.00 3.71
2546 10007 6.197842 CCCATCGTAAAATTACTGTCGTAGTC 59.802 42.308 2.18 0.00 40.89 2.59
2715 10191 4.575236 ACGCGAGAAATATACTCTGTCTCA 59.425 41.667 15.93 0.00 35.50 3.27
2797 10273 1.137086 GCTTCTATGACTGGCTCGGAA 59.863 52.381 0.00 0.00 0.00 4.30
2798 10274 2.815478 CTTCTATGACTGGCTCGGAAC 58.185 52.381 0.00 0.00 0.00 3.62
2818 10294 6.735130 GGAACGGTTTTATAAGCTTATGCAT 58.265 36.000 25.99 3.79 42.74 3.96
2859 10338 2.510613 TCCGTGTTTCTTTGGGGATTC 58.489 47.619 0.00 0.00 0.00 2.52
2865 10344 5.462068 CGTGTTTCTTTGGGGATTCTTTTTC 59.538 40.000 0.00 0.00 0.00 2.29
2879 10358 8.567948 GGGATTCTTTTTCCATTTTCCTTTTTC 58.432 33.333 0.00 0.00 34.77 2.29
3040 11729 9.391006 TGTAAGGAATATTAGTCCAACATTGTC 57.609 33.333 12.40 0.00 37.65 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 7.917505 CGGCTTTGAATTGAATTATAGCTCTTT 59.082 33.333 14.08 0.00 0.00 2.52
42 44 6.729187 ACGGCTTTGAATTGAATTATAGCTC 58.271 36.000 14.08 7.19 0.00 4.09
95 104 2.202260 CTGCATGCACAAGCGACG 60.202 61.111 18.46 0.00 46.23 5.12
193 212 1.932511 GTCTAAGCTCAGACTGCATGC 59.067 52.381 9.99 11.82 41.49 4.06
194 213 3.242549 TGTCTAAGCTCAGACTGCATG 57.757 47.619 18.00 0.00 44.41 4.06
195 214 4.484537 AATGTCTAAGCTCAGACTGCAT 57.515 40.909 18.00 0.64 44.41 3.96
196 215 3.969287 AATGTCTAAGCTCAGACTGCA 57.031 42.857 18.00 0.00 44.41 4.41
804 846 2.836360 GGAGGGTGTCGGGCGATA 60.836 66.667 0.00 0.00 0.00 2.92
859 901 1.073964 CTCACGATGGTGCTGTTGAG 58.926 55.000 2.48 0.00 44.03 3.02
863 905 1.375140 CTGCTCACGATGGTGCTGT 60.375 57.895 2.48 0.00 44.03 4.40
868 910 2.573869 CGTCCTGCTCACGATGGT 59.426 61.111 0.00 0.00 39.75 3.55
1071 1113 1.374758 CTTCTTCTGCCGAAGCCGT 60.375 57.895 12.62 0.00 45.01 5.68
1104 1152 2.113807 AGCACATCTAGCATGTCCTCA 58.886 47.619 0.00 0.00 0.00 3.86
1222 2090 4.824166 CACGGAGGGCGTACGTCG 62.824 72.222 15.50 14.57 39.02 5.12
1230 2098 3.851128 GGGAGTAGCACGGAGGGC 61.851 72.222 0.00 0.00 0.00 5.19
1235 2103 1.033746 TTACGGAGGGAGTAGCACGG 61.034 60.000 0.00 0.00 0.00 4.94
1241 2109 6.183360 GCTTATCTTTCTTTACGGAGGGAGTA 60.183 42.308 0.00 0.00 0.00 2.59
1242 2110 5.395435 GCTTATCTTTCTTTACGGAGGGAGT 60.395 44.000 0.00 0.00 0.00 3.85
1243 2111 5.051153 GCTTATCTTTCTTTACGGAGGGAG 58.949 45.833 0.00 0.00 0.00 4.30
1244 2112 4.441079 CGCTTATCTTTCTTTACGGAGGGA 60.441 45.833 0.00 0.00 0.00 4.20
1245 2113 3.802685 CGCTTATCTTTCTTTACGGAGGG 59.197 47.826 0.00 0.00 0.00 4.30
1246 2114 4.430908 ACGCTTATCTTTCTTTACGGAGG 58.569 43.478 0.00 0.00 0.00 4.30
1247 2115 6.404712 AAACGCTTATCTTTCTTTACGGAG 57.595 37.500 0.00 0.00 0.00 4.63
1248 2116 7.315142 TCTAAACGCTTATCTTTCTTTACGGA 58.685 34.615 0.00 0.00 0.00 4.69
1249 2117 7.515957 TCTAAACGCTTATCTTTCTTTACGG 57.484 36.000 0.00 0.00 0.00 4.02
1250 2118 8.804743 TGATCTAAACGCTTATCTTTCTTTACG 58.195 33.333 0.00 0.00 0.00 3.18
1252 2120 9.871238 ACTGATCTAAACGCTTATCTTTCTTTA 57.129 29.630 0.00 0.00 0.00 1.85
1253 2121 8.779354 ACTGATCTAAACGCTTATCTTTCTTT 57.221 30.769 0.00 0.00 0.00 2.52
1254 2122 9.522804 CTACTGATCTAAACGCTTATCTTTCTT 57.477 33.333 0.00 0.00 0.00 2.52
1255 2123 8.904834 TCTACTGATCTAAACGCTTATCTTTCT 58.095 33.333 0.00 0.00 0.00 2.52
1256 2124 9.176181 CTCTACTGATCTAAACGCTTATCTTTC 57.824 37.037 0.00 0.00 0.00 2.62
1257 2125 8.138712 CCTCTACTGATCTAAACGCTTATCTTT 58.861 37.037 0.00 0.00 0.00 2.52
1258 2126 7.255660 CCCTCTACTGATCTAAACGCTTATCTT 60.256 40.741 0.00 0.00 0.00 2.40
1259 2127 6.207810 CCCTCTACTGATCTAAACGCTTATCT 59.792 42.308 0.00 0.00 0.00 1.98
1260 2128 6.207025 TCCCTCTACTGATCTAAACGCTTATC 59.793 42.308 0.00 0.00 0.00 1.75
1261 2129 6.069331 TCCCTCTACTGATCTAAACGCTTAT 58.931 40.000 0.00 0.00 0.00 1.73
1262 2130 5.443283 TCCCTCTACTGATCTAAACGCTTA 58.557 41.667 0.00 0.00 0.00 3.09
1263 2131 4.279145 TCCCTCTACTGATCTAAACGCTT 58.721 43.478 0.00 0.00 0.00 4.68
1264 2132 3.886505 CTCCCTCTACTGATCTAAACGCT 59.113 47.826 0.00 0.00 0.00 5.07
1265 2133 3.633065 ACTCCCTCTACTGATCTAAACGC 59.367 47.826 0.00 0.00 0.00 4.84
1266 2134 8.618702 TTATACTCCCTCTACTGATCTAAACG 57.381 38.462 0.00 0.00 0.00 3.60
1275 2143 9.790389 CGCTTTTATATTATACTCCCTCTACTG 57.210 37.037 0.00 0.00 0.00 2.74
1276 2144 9.531158 ACGCTTTTATATTATACTCCCTCTACT 57.469 33.333 0.00 0.00 0.00 2.57
1281 2149 9.623000 ACAAAACGCTTTTATATTATACTCCCT 57.377 29.630 0.00 0.00 0.00 4.20
1306 2174 6.146673 ACCGTTTTGACACTACAATAGCTTAC 59.853 38.462 0.00 0.00 0.00 2.34
1309 2177 4.638304 ACCGTTTTGACACTACAATAGCT 58.362 39.130 0.00 0.00 0.00 3.32
1310 2178 4.689345 AGACCGTTTTGACACTACAATAGC 59.311 41.667 0.00 0.00 0.00 2.97
1314 2182 7.436118 AGTATAAGACCGTTTTGACACTACAA 58.564 34.615 0.00 0.00 0.00 2.41
1344 2215 6.390721 TCCTTTCTACTCTTTTCGTCTCATG 58.609 40.000 0.00 0.00 0.00 3.07
1381 2299 5.864474 AGTTAGTTCTGTGCAGAGTTAATCG 59.136 40.000 11.09 0.00 38.88 3.34
1483 2405 3.462021 GGTTCTTCATTAGCTCTGCGAT 58.538 45.455 0.00 0.00 0.00 4.58
1494 2416 3.593328 TCATCTCCTTGGGGTTCTTCATT 59.407 43.478 0.00 0.00 0.00 2.57
1549 2471 0.607489 CACCAACTTGCCTCTCCCTG 60.607 60.000 0.00 0.00 0.00 4.45
1551 2473 1.973812 GCACCAACTTGCCTCTCCC 60.974 63.158 0.00 0.00 36.42 4.30
1645 2567 2.311854 CCTTGCAGACCCTGGGGAT 61.312 63.158 18.88 1.26 38.96 3.85
1677 2599 0.322098 CCGGAATTGTGTAGCCACCA 60.322 55.000 0.00 0.00 41.09 4.17
1732 2654 0.693049 CAGTACCTTTGGTCCCTGCT 59.307 55.000 0.00 0.00 37.09 4.24
1742 2664 1.551019 GGCGTCCTCCCAGTACCTTT 61.551 60.000 0.00 0.00 0.00 3.11
1743 2665 1.988406 GGCGTCCTCCCAGTACCTT 60.988 63.158 0.00 0.00 0.00 3.50
2067 2989 1.106944 ACCCAGCCAACAAGGAAACG 61.107 55.000 0.00 0.00 41.22 3.60
2333 5912 1.849977 TTTTGGCCATATGAGCTGCA 58.150 45.000 6.09 0.00 0.00 4.41
2385 5964 6.951778 ACCACCTTTTATATGCTTTTGTACCT 59.048 34.615 0.00 0.00 0.00 3.08
2388 5967 7.885922 TCTCACCACCTTTTATATGCTTTTGTA 59.114 33.333 0.00 0.00 0.00 2.41
2473 6052 3.270027 CCGACAATTTCACTATCTGCCA 58.730 45.455 0.00 0.00 0.00 4.92
2663 10139 0.328450 AATGGGTGGCCTCTGGGATA 60.328 55.000 3.32 0.00 33.58 2.59
2671 10147 4.686122 CGTAATTCTTAGAATGGGTGGCCT 60.686 45.833 8.34 0.00 0.00 5.19
2797 10273 6.693315 ACATGCATAAGCTTATAAAACCGT 57.307 33.333 18.45 8.68 42.74 4.83
2798 10274 7.985634 AAACATGCATAAGCTTATAAAACCG 57.014 32.000 18.45 6.74 42.74 4.44
3016 11705 9.967451 TTGACAATGTTGGACTAATATTCCTTA 57.033 29.630 0.00 0.00 33.84 2.69
3018 11707 8.877864 TTTGACAATGTTGGACTAATATTCCT 57.122 30.769 0.00 0.00 33.84 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.