Multiple sequence alignment - TraesCS5D01G278100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G278100 chr5D 100.000 2654 0 0 1 2654 380012422 380015075 0.000000e+00 4902.0
1 TraesCS5D01G278100 chr5D 81.944 360 44 10 1001 1360 379965394 379965732 4.320000e-73 285.0
2 TraesCS5D01G278100 chr5D 97.561 82 1 1 1698 1778 380014037 380014118 3.560000e-29 139.0
3 TraesCS5D01G278100 chr5D 97.561 82 1 1 1616 1697 380014119 380014199 3.560000e-29 139.0
4 TraesCS5D01G278100 chr5D 95.238 84 4 0 1873 1956 522040943 522040860 1.660000e-27 134.0
5 TraesCS5D01G278100 chr5D 92.941 85 6 0 1872 1956 497392888 497392804 9.970000e-25 124.0
6 TraesCS5D01G278100 chr5D 92.941 85 6 0 1872 1956 497461380 497461296 9.970000e-25 124.0
7 TraesCS5D01G278100 chr5B 93.195 1058 68 2 640 1697 455825232 455826285 0.000000e+00 1552.0
8 TraesCS5D01G278100 chr5B 80.682 616 89 19 925 1523 455829729 455830331 4.030000e-123 451.0
9 TraesCS5D01G278100 chr5B 79.157 451 59 21 2121 2566 455826442 455826862 2.010000e-71 279.0
10 TraesCS5D01G278100 chr5B 84.492 187 16 5 1698 1871 455826204 455826390 3.510000e-39 172.0
11 TraesCS5D01G278100 chr5B 94.898 98 4 1 1 97 455806157 455806254 4.580000e-33 152.0
12 TraesCS5D01G278100 chr5B 97.222 72 2 0 333 404 455825135 455825206 3.590000e-24 122.0
13 TraesCS5D01G278100 chr5A 90.121 1073 75 5 638 1693 480502812 480503870 0.000000e+00 1365.0
14 TraesCS5D01G278100 chr5A 82.033 551 83 12 975 1523 480507879 480508415 3.110000e-124 455.0
15 TraesCS5D01G278100 chr5A 89.815 324 21 7 95 410 480502492 480502811 3.180000e-109 405.0
16 TraesCS5D01G278100 chr5A 88.276 145 14 2 2121 2262 480504017 480504161 1.260000e-38 171.0
17 TraesCS5D01G278100 chr5A 95.876 97 4 0 1 97 480485228 480485324 9.830000e-35 158.0
18 TraesCS5D01G278100 chr5A 96.053 76 3 0 1875 1950 503636056 503636131 9.970000e-25 124.0
19 TraesCS5D01G278100 chr3B 92.519 401 30 0 1052 1452 39345337 39344937 2.290000e-160 575.0
20 TraesCS5D01G278100 chr3B 90.777 206 19 0 1052 1257 770088010 770087805 2.600000e-70 276.0
21 TraesCS5D01G278100 chr3B 80.952 210 30 3 441 642 31521407 31521200 9.830000e-35 158.0
22 TraesCS5D01G278100 chr3B 81.095 201 29 2 440 632 31305678 31305479 4.580000e-33 152.0
23 TraesCS5D01G278100 chr3B 94.937 79 4 0 1872 1950 537858287 537858365 9.970000e-25 124.0
24 TraesCS5D01G278100 chr6B 92.677 396 29 0 1052 1447 656201912 656202307 2.960000e-159 571.0
25 TraesCS5D01G278100 chr6B 79.279 222 32 9 429 641 654635500 654635716 2.750000e-30 143.0
26 TraesCS5D01G278100 chr6B 77.193 171 27 6 483 642 41256928 41257097 3.640000e-14 89.8
27 TraesCS5D01G278100 chr2A 87.500 168 21 0 1198 1365 668074758 668074925 7.500000e-46 195.0
28 TraesCS5D01G278100 chr3A 82.160 213 27 5 439 641 701177090 701176879 3.510000e-39 172.0
29 TraesCS5D01G278100 chr7A 81.250 224 29 6 428 642 682176362 682176581 4.540000e-38 169.0
30 TraesCS5D01G278100 chr6D 84.302 172 19 4 1867 2030 336995852 336995681 7.600000e-36 161.0
31 TraesCS5D01G278100 chr6D 85.437 103 8 6 1967 2066 453001993 453002091 1.680000e-17 100.0
32 TraesCS5D01G278100 chr7D 80.184 217 31 5 436 642 167578000 167577786 4.580000e-33 152.0
33 TraesCS5D01G278100 chr7D 95.833 72 2 1 1959 2030 39319097 39319027 6.000000e-22 115.0
34 TraesCS5D01G278100 chr7B 78.667 225 36 7 428 642 202077595 202077817 3.560000e-29 139.0
35 TraesCS5D01G278100 chr7B 95.833 72 3 0 1959 2030 650119264 650119335 1.670000e-22 117.0
36 TraesCS5D01G278100 chr7B 90.476 84 7 1 1959 2042 218525717 218525635 2.790000e-20 110.0
37 TraesCS5D01G278100 chr1B 88.991 109 12 0 1149 1257 642191939 642192047 4.610000e-28 135.0
38 TraesCS5D01G278100 chr1B 88.636 88 6 4 1962 2047 619169902 619169817 1.300000e-18 104.0
39 TraesCS5D01G278100 chr1B 84.043 94 15 0 539 632 302512444 302512351 1.010000e-14 91.6
40 TraesCS5D01G278100 chr2B 96.053 76 3 0 1875 1950 187486271 187486346 9.970000e-25 124.0
41 TraesCS5D01G278100 chr1A 91.304 92 6 2 1865 1955 25538990 25538900 9.970000e-25 124.0
42 TraesCS5D01G278100 chrUn 92.857 84 6 0 1873 1956 383416028 383415945 3.590000e-24 122.0
43 TraesCS5D01G278100 chrUn 77.193 171 27 6 483 642 234163280 234163449 3.640000e-14 89.8
44 TraesCS5D01G278100 chr4B 95.890 73 3 0 1959 2031 643642247 643642319 4.640000e-23 119.0
45 TraesCS5D01G278100 chr2D 94.595 74 4 0 1959 2032 36493056 36493129 6.000000e-22 115.0
46 TraesCS5D01G278100 chr4A 92.308 78 6 0 1959 2036 735070038 735069961 7.770000e-21 111.0
47 TraesCS5D01G278100 chr3D 87.912 91 7 4 1959 2048 250022693 250022606 1.300000e-18 104.0
48 TraesCS5D01G278100 chr1D 82.979 94 16 0 539 632 212718955 212719048 4.710000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G278100 chr5D 380012422 380015075 2653 False 1726.666667 4902 98.37400 1 2654 3 chr5D.!!$F2 2653
1 TraesCS5D01G278100 chr5B 455825135 455830331 5196 False 515.200000 1552 86.94960 333 2566 5 chr5B.!!$F2 2233
2 TraesCS5D01G278100 chr5A 480502492 480508415 5923 False 599.000000 1365 87.56125 95 2262 4 chr5A.!!$F3 2167

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 230 0.039798 GACGGACGCGATTAGCCATA 60.04 55.0 15.93 0.0 44.76 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1711 1736 0.03601 AGTCATCGGCCTCCAAAGTG 60.036 55.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 7.277174 AGCATAAAACTACCATAATTCTGGC 57.723 36.000 9.68 0.00 40.15 4.85
67 68 6.833416 AGCATAAAACTACCATAATTCTGGCA 59.167 34.615 9.68 0.00 40.15 4.92
68 69 7.341769 AGCATAAAACTACCATAATTCTGGCAA 59.658 33.333 9.68 0.00 40.15 4.52
69 70 7.649306 GCATAAAACTACCATAATTCTGGCAAG 59.351 37.037 9.68 9.80 40.15 4.01
70 71 6.530019 AAAACTACCATAATTCTGGCAAGG 57.470 37.500 9.68 1.23 40.15 3.61
71 72 4.170468 ACTACCATAATTCTGGCAAGGG 57.830 45.455 9.68 0.00 40.15 3.95
72 73 3.527665 ACTACCATAATTCTGGCAAGGGT 59.472 43.478 9.68 0.00 40.15 4.34
73 74 3.473113 ACCATAATTCTGGCAAGGGTT 57.527 42.857 9.68 0.00 40.15 4.11
74 75 3.365472 ACCATAATTCTGGCAAGGGTTC 58.635 45.455 9.68 0.00 40.15 3.62
75 76 3.011708 ACCATAATTCTGGCAAGGGTTCT 59.988 43.478 9.68 0.00 40.15 3.01
76 77 3.382546 CCATAATTCTGGCAAGGGTTCTG 59.617 47.826 0.00 0.00 0.00 3.02
77 78 2.978156 AATTCTGGCAAGGGTTCTGA 57.022 45.000 0.00 0.00 0.00 3.27
78 79 2.978156 ATTCTGGCAAGGGTTCTGAA 57.022 45.000 0.00 0.00 0.00 3.02
79 80 2.746279 TTCTGGCAAGGGTTCTGAAA 57.254 45.000 0.00 0.00 0.00 2.69
80 81 2.746279 TCTGGCAAGGGTTCTGAAAA 57.254 45.000 0.00 0.00 0.00 2.29
81 82 3.025322 TCTGGCAAGGGTTCTGAAAAA 57.975 42.857 0.00 0.00 0.00 1.94
82 83 3.575805 TCTGGCAAGGGTTCTGAAAAAT 58.424 40.909 0.00 0.00 0.00 1.82
83 84 3.966665 TCTGGCAAGGGTTCTGAAAAATT 59.033 39.130 0.00 0.00 0.00 1.82
84 85 5.144100 TCTGGCAAGGGTTCTGAAAAATTA 58.856 37.500 0.00 0.00 0.00 1.40
85 86 5.010617 TCTGGCAAGGGTTCTGAAAAATTAC 59.989 40.000 0.00 0.00 0.00 1.89
86 87 4.039852 TGGCAAGGGTTCTGAAAAATTACC 59.960 41.667 0.00 0.00 0.00 2.85
87 88 4.234574 GCAAGGGTTCTGAAAAATTACCG 58.765 43.478 0.00 0.00 0.00 4.02
88 89 4.234574 CAAGGGTTCTGAAAAATTACCGC 58.765 43.478 0.00 0.00 0.00 5.68
89 90 3.763057 AGGGTTCTGAAAAATTACCGCT 58.237 40.909 0.00 0.00 0.00 5.52
90 91 4.149598 AGGGTTCTGAAAAATTACCGCTT 58.850 39.130 0.00 0.00 0.00 4.68
91 92 4.587262 AGGGTTCTGAAAAATTACCGCTTT 59.413 37.500 0.00 0.00 0.00 3.51
92 93 5.069914 AGGGTTCTGAAAAATTACCGCTTTT 59.930 36.000 0.00 0.00 0.00 2.27
93 94 5.756347 GGGTTCTGAAAAATTACCGCTTTTT 59.244 36.000 0.00 0.00 38.23 1.94
147 148 2.095263 GCGCCAAAGCATCAGAAAGTTA 60.095 45.455 0.00 0.00 39.83 2.24
153 154 5.705441 CCAAAGCATCAGAAAGTTAGTACCA 59.295 40.000 0.00 0.00 0.00 3.25
173 175 0.880278 TCTGCTCAGACCGTTTGTGC 60.880 55.000 8.70 8.70 36.04 4.57
199 201 1.809619 GTCGTAATCAGCTGCCGCA 60.810 57.895 9.47 0.00 39.10 5.69
227 229 1.299926 GACGGACGCGATTAGCCAT 60.300 57.895 15.93 0.00 44.76 4.40
228 230 0.039798 GACGGACGCGATTAGCCATA 60.040 55.000 15.93 0.00 44.76 2.74
230 232 0.782384 CGGACGCGATTAGCCATAAC 59.218 55.000 15.93 0.00 44.76 1.89
233 235 0.250166 ACGCGATTAGCCATAACCCC 60.250 55.000 15.93 0.00 44.76 4.95
236 238 0.321298 CGATTAGCCATAACCCCGGG 60.321 60.000 15.80 15.80 0.00 5.73
240 242 4.265056 GCCATAACCCCGGGCGAT 62.265 66.667 17.73 4.31 38.04 4.58
241 243 2.032071 CCATAACCCCGGGCGATC 59.968 66.667 17.73 0.00 0.00 3.69
242 244 2.357034 CATAACCCCGGGCGATCG 60.357 66.667 17.73 11.69 0.00 3.69
276 278 4.151689 TGTCTGCTACTGCGTATTTTGTTC 59.848 41.667 0.00 0.00 43.34 3.18
292 294 0.784778 GTTCCGAAACTCGCTGTCAG 59.215 55.000 0.00 0.00 38.82 3.51
296 298 1.621301 CGAAACTCGCTGTCAGCCAG 61.621 60.000 19.14 17.95 44.53 4.85
307 309 1.077716 TCAGCCAGGTCTCGATCGA 60.078 57.895 18.32 18.32 0.00 3.59
308 310 0.466372 TCAGCCAGGTCTCGATCGAT 60.466 55.000 19.78 0.00 0.00 3.59
309 311 0.387202 CAGCCAGGTCTCGATCGATT 59.613 55.000 19.78 1.97 0.00 3.34
310 312 1.609072 CAGCCAGGTCTCGATCGATTA 59.391 52.381 19.78 7.26 0.00 1.75
311 313 2.034685 CAGCCAGGTCTCGATCGATTAA 59.965 50.000 19.78 4.53 0.00 1.40
312 314 2.894126 AGCCAGGTCTCGATCGATTAAT 59.106 45.455 19.78 2.66 0.00 1.40
313 315 3.322254 AGCCAGGTCTCGATCGATTAATT 59.678 43.478 19.78 0.84 0.00 1.40
314 316 4.523173 AGCCAGGTCTCGATCGATTAATTA 59.477 41.667 19.78 0.00 0.00 1.40
315 317 5.010719 AGCCAGGTCTCGATCGATTAATTAA 59.989 40.000 19.78 0.00 0.00 1.40
316 318 5.869888 GCCAGGTCTCGATCGATTAATTAAT 59.130 40.000 19.78 10.51 0.00 1.40
317 319 6.369065 GCCAGGTCTCGATCGATTAATTAATT 59.631 38.462 19.78 5.89 0.00 1.40
318 320 7.544566 GCCAGGTCTCGATCGATTAATTAATTA 59.455 37.037 19.78 3.71 0.00 1.40
363 367 1.602771 GTTAGGCCTGTCACCCTCC 59.397 63.158 17.99 0.00 32.65 4.30
404 412 1.448013 GTGGCCGAGCAGAACTACC 60.448 63.158 0.00 0.00 0.00 3.18
410 418 0.888619 CGAGCAGAACTACCCACTCA 59.111 55.000 0.00 0.00 0.00 3.41
412 420 2.736719 CGAGCAGAACTACCCACTCATG 60.737 54.545 0.00 0.00 0.00 3.07
413 421 1.065854 AGCAGAACTACCCACTCATGC 60.066 52.381 0.00 0.00 0.00 4.06
414 422 1.339055 GCAGAACTACCCACTCATGCA 60.339 52.381 0.00 0.00 32.79 3.96
416 424 3.201290 CAGAACTACCCACTCATGCATC 58.799 50.000 0.00 0.00 0.00 3.91
417 425 2.840038 AGAACTACCCACTCATGCATCA 59.160 45.455 0.00 0.00 0.00 3.07
418 426 3.457380 AGAACTACCCACTCATGCATCAT 59.543 43.478 0.00 0.00 0.00 2.45
419 427 3.939740 ACTACCCACTCATGCATCATT 57.060 42.857 0.00 0.00 0.00 2.57
420 428 4.240881 ACTACCCACTCATGCATCATTT 57.759 40.909 0.00 0.00 0.00 2.32
421 429 4.603131 ACTACCCACTCATGCATCATTTT 58.397 39.130 0.00 0.00 0.00 1.82
422 430 5.018809 ACTACCCACTCATGCATCATTTTT 58.981 37.500 0.00 0.00 0.00 1.94
423 431 6.186957 ACTACCCACTCATGCATCATTTTTA 58.813 36.000 0.00 0.00 0.00 1.52
424 432 5.329035 ACCCACTCATGCATCATTTTTAC 57.671 39.130 0.00 0.00 0.00 2.01
425 433 5.018809 ACCCACTCATGCATCATTTTTACT 58.981 37.500 0.00 0.00 0.00 2.24
427 435 5.105635 CCCACTCATGCATCATTTTTACTGT 60.106 40.000 0.00 0.00 0.00 3.55
429 437 7.362834 CCCACTCATGCATCATTTTTACTGTTA 60.363 37.037 0.00 0.00 0.00 2.41
430 438 7.485913 CCACTCATGCATCATTTTTACTGTTAC 59.514 37.037 0.00 0.00 0.00 2.50
431 439 8.239314 CACTCATGCATCATTTTTACTGTTACT 58.761 33.333 0.00 0.00 0.00 2.24
432 440 9.448438 ACTCATGCATCATTTTTACTGTTACTA 57.552 29.630 0.00 0.00 0.00 1.82
444 452 7.894376 TTTACTGTTACTATTTTCGTCCTGG 57.106 36.000 0.00 0.00 0.00 4.45
445 453 5.479124 ACTGTTACTATTTTCGTCCTGGT 57.521 39.130 0.00 0.00 0.00 4.00
446 454 5.861727 ACTGTTACTATTTTCGTCCTGGTT 58.138 37.500 0.00 0.00 0.00 3.67
447 455 6.293698 ACTGTTACTATTTTCGTCCTGGTTT 58.706 36.000 0.00 0.00 0.00 3.27
448 456 7.444299 ACTGTTACTATTTTCGTCCTGGTTTA 58.556 34.615 0.00 0.00 0.00 2.01
449 457 8.098912 ACTGTTACTATTTTCGTCCTGGTTTAT 58.901 33.333 0.00 0.00 0.00 1.40
450 458 8.851541 TGTTACTATTTTCGTCCTGGTTTATT 57.148 30.769 0.00 0.00 0.00 1.40
451 459 9.941325 TGTTACTATTTTCGTCCTGGTTTATTA 57.059 29.630 0.00 0.00 0.00 0.98
454 462 8.713737 ACTATTTTCGTCCTGGTTTATTAGTC 57.286 34.615 0.00 0.00 0.00 2.59
455 463 6.997239 ATTTTCGTCCTGGTTTATTAGTCC 57.003 37.500 0.00 0.00 0.00 3.85
456 464 5.750352 TTTCGTCCTGGTTTATTAGTCCT 57.250 39.130 0.00 0.00 0.00 3.85
457 465 5.750352 TTCGTCCTGGTTTATTAGTCCTT 57.250 39.130 0.00 0.00 0.00 3.36
458 466 5.334724 TCGTCCTGGTTTATTAGTCCTTC 57.665 43.478 0.00 0.00 0.00 3.46
459 467 5.021458 TCGTCCTGGTTTATTAGTCCTTCT 58.979 41.667 0.00 0.00 0.00 2.85
460 468 5.482878 TCGTCCTGGTTTATTAGTCCTTCTT 59.517 40.000 0.00 0.00 0.00 2.52
461 469 6.664816 TCGTCCTGGTTTATTAGTCCTTCTTA 59.335 38.462 0.00 0.00 0.00 2.10
462 470 7.343833 TCGTCCTGGTTTATTAGTCCTTCTTAT 59.656 37.037 0.00 0.00 0.00 1.73
463 471 8.636213 CGTCCTGGTTTATTAGTCCTTCTTATA 58.364 37.037 0.00 0.00 0.00 0.98
464 472 9.984190 GTCCTGGTTTATTAGTCCTTCTTATAG 57.016 37.037 0.00 0.00 0.00 1.31
465 473 9.725206 TCCTGGTTTATTAGTCCTTCTTATAGT 57.275 33.333 0.00 0.00 0.00 2.12
489 497 8.871686 GTTTGAGTCAAACTTTAACCATTGAT 57.128 30.769 32.21 0.00 46.84 2.57
490 498 9.313118 GTTTGAGTCAAACTTTAACCATTGATT 57.687 29.630 32.21 0.00 46.84 2.57
491 499 9.883142 TTTGAGTCAAACTTTAACCATTGATTT 57.117 25.926 14.35 0.00 34.62 2.17
540 548 8.311395 ACCTCAGAAATAGTATCATTGAGTCA 57.689 34.615 12.80 0.00 31.12 3.41
541 549 8.762645 ACCTCAGAAATAGTATCATTGAGTCAA 58.237 33.333 8.27 8.27 31.12 3.18
542 550 9.605275 CCTCAGAAATAGTATCATTGAGTCAAA 57.395 33.333 10.14 0.00 31.12 2.69
609 617 9.584839 AATTTGTTAGTCAAACGTACGATTAAC 57.415 29.630 24.41 13.20 46.77 2.01
610 618 6.361297 TGTTAGTCAAACGTACGATTAACG 57.639 37.500 24.41 4.99 45.64 3.18
626 634 7.418006 CGATTAACGTTGGACACAAAATATG 57.582 36.000 11.99 0.00 38.54 1.78
627 635 7.237871 CGATTAACGTTGGACACAAAATATGA 58.762 34.615 11.99 0.00 38.54 2.15
628 636 7.746916 CGATTAACGTTGGACACAAAATATGAA 59.253 33.333 11.99 0.00 38.54 2.57
629 637 8.964420 ATTAACGTTGGACACAAAATATGAAG 57.036 30.769 11.99 0.00 38.54 3.02
630 638 5.371115 ACGTTGGACACAAAATATGAAGG 57.629 39.130 0.00 0.00 38.54 3.46
631 639 4.217550 ACGTTGGACACAAAATATGAAGGG 59.782 41.667 0.00 0.00 38.54 3.95
632 640 4.457603 CGTTGGACACAAAATATGAAGGGA 59.542 41.667 0.00 0.00 38.54 4.20
633 641 5.619086 CGTTGGACACAAAATATGAAGGGAC 60.619 44.000 0.00 0.00 38.54 4.46
634 642 4.340617 TGGACACAAAATATGAAGGGACC 58.659 43.478 0.00 0.00 0.00 4.46
635 643 4.202620 TGGACACAAAATATGAAGGGACCA 60.203 41.667 0.00 0.00 0.00 4.02
636 644 4.770010 GGACACAAAATATGAAGGGACCAA 59.230 41.667 0.00 0.00 0.00 3.67
652 660 5.838521 AGGGACCAATAAACAAGTTGTCATT 59.161 36.000 9.40 9.19 0.00 2.57
654 662 6.462347 GGGACCAATAAACAAGTTGTCATTGT 60.462 38.462 26.07 19.30 42.55 2.71
672 680 7.380870 TGTCATTGTTGTTGTTTATCCATTTCG 59.619 33.333 0.00 0.00 0.00 3.46
677 685 9.582431 TTGTTGTTGTTTATCCATTTCGTTTTA 57.418 25.926 0.00 0.00 0.00 1.52
680 688 9.453325 TTGTTGTTTATCCATTTCGTTTTAGAC 57.547 29.630 0.00 0.00 0.00 2.59
852 860 1.093972 CCTGCGTCATGGCATAAACA 58.906 50.000 0.00 0.00 42.99 2.83
855 863 2.090760 TGCGTCATGGCATAAACACAT 58.909 42.857 0.00 0.00 38.17 3.21
858 866 3.683989 CGTCATGGCATAAACACATCAC 58.316 45.455 0.00 0.00 0.00 3.06
878 886 1.802069 GAACCTCTTGCACACCTCTC 58.198 55.000 0.00 0.00 0.00 3.20
913 921 0.250901 AAAAGGCTGGATCACACGCT 60.251 50.000 0.00 0.00 0.00 5.07
1012 1037 2.092646 AGGTAATAAATGGGCTCGTGCA 60.093 45.455 12.07 0.00 41.91 4.57
1480 1505 2.024871 CTGACGAGATCGCCGGAC 59.975 66.667 5.05 0.00 44.43 4.79
1507 1532 2.567169 GGTGGATCGGATCATCACCATA 59.433 50.000 27.55 3.69 30.39 2.74
1508 1533 3.589988 GTGGATCGGATCATCACCATAC 58.410 50.000 18.99 0.00 0.00 2.39
1661 1686 1.743996 GATGACTTCTGAGCAACCCC 58.256 55.000 0.00 0.00 0.00 4.95
1674 1699 3.631250 AGCAACCCCGTATTGATTCAAT 58.369 40.909 15.78 15.78 37.80 2.57
1687 1712 7.374228 CGTATTGATTCAATGGTTCGATTCTTG 59.626 37.037 19.81 0.00 35.54 3.02
1688 1713 5.565592 TGATTCAATGGTTCGATTCTTGG 57.434 39.130 0.00 0.00 0.00 3.61
1689 1714 4.398988 TGATTCAATGGTTCGATTCTTGGG 59.601 41.667 0.00 0.00 0.00 4.12
1690 1715 3.712016 TCAATGGTTCGATTCTTGGGA 57.288 42.857 0.00 0.00 0.00 4.37
1691 1716 3.609853 TCAATGGTTCGATTCTTGGGAG 58.390 45.455 0.00 0.00 0.00 4.30
1692 1717 3.009033 TCAATGGTTCGATTCTTGGGAGT 59.991 43.478 0.00 0.00 0.00 3.85
1693 1718 3.721087 ATGGTTCGATTCTTGGGAGTT 57.279 42.857 0.00 0.00 0.00 3.01
1694 1719 2.778299 TGGTTCGATTCTTGGGAGTTG 58.222 47.619 0.00 0.00 0.00 3.16
1695 1720 2.084546 GGTTCGATTCTTGGGAGTTGG 58.915 52.381 0.00 0.00 0.00 3.77
1696 1721 2.084546 GTTCGATTCTTGGGAGTTGGG 58.915 52.381 0.00 0.00 0.00 4.12
1697 1722 0.035439 TCGATTCTTGGGAGTTGGGC 60.035 55.000 0.00 0.00 0.00 5.36
1698 1723 1.032114 CGATTCTTGGGAGTTGGGCC 61.032 60.000 0.00 0.00 0.00 5.80
1699 1724 0.039618 GATTCTTGGGAGTTGGGCCA 59.960 55.000 0.00 0.00 0.00 5.36
1700 1725 0.486879 ATTCTTGGGAGTTGGGCCAA 59.513 50.000 16.66 16.66 0.00 4.52
1701 1726 0.469144 TTCTTGGGAGTTGGGCCAAC 60.469 55.000 36.51 36.51 43.83 3.77
1708 1733 4.043200 GTTGGGCCAACGCTGAGC 62.043 66.667 31.75 9.33 34.63 4.26
1709 1734 4.269523 TTGGGCCAACGCTGAGCT 62.270 61.111 16.66 0.00 34.44 4.09
1710 1735 4.704833 TGGGCCAACGCTGAGCTC 62.705 66.667 2.13 6.82 34.44 4.09
1712 1737 4.704833 GGCCAACGCTGAGCTCCA 62.705 66.667 12.15 0.00 34.44 3.86
1713 1738 3.426568 GCCAACGCTGAGCTCCAC 61.427 66.667 12.15 1.73 0.00 4.02
1714 1739 2.345244 CCAACGCTGAGCTCCACT 59.655 61.111 12.15 0.00 0.00 4.00
1715 1740 1.302033 CCAACGCTGAGCTCCACTT 60.302 57.895 12.15 0.00 0.00 3.16
1716 1741 0.886490 CCAACGCTGAGCTCCACTTT 60.886 55.000 12.15 0.00 0.00 2.66
1717 1742 0.236711 CAACGCTGAGCTCCACTTTG 59.763 55.000 12.15 9.34 0.00 2.77
1718 1743 0.886490 AACGCTGAGCTCCACTTTGG 60.886 55.000 12.15 0.00 39.43 3.28
1719 1744 1.004560 CGCTGAGCTCCACTTTGGA 60.005 57.895 12.15 0.00 45.98 3.53
1726 1751 3.820425 TCCACTTTGGAGGCCGAT 58.180 55.556 0.00 0.00 42.67 4.18
1727 1752 1.299648 TCCACTTTGGAGGCCGATG 59.700 57.895 0.00 0.00 42.67 3.84
1728 1753 1.198094 TCCACTTTGGAGGCCGATGA 61.198 55.000 0.00 0.00 42.67 2.92
1729 1754 1.026718 CCACTTTGGAGGCCGATGAC 61.027 60.000 0.00 0.00 40.96 3.06
1730 1755 0.036010 CACTTTGGAGGCCGATGACT 60.036 55.000 0.00 0.00 0.00 3.41
1731 1756 0.693049 ACTTTGGAGGCCGATGACTT 59.307 50.000 0.00 0.00 0.00 3.01
1732 1757 1.339151 ACTTTGGAGGCCGATGACTTC 60.339 52.381 0.00 0.00 0.00 3.01
1733 1758 0.984230 TTTGGAGGCCGATGACTTCT 59.016 50.000 0.00 0.00 0.00 2.85
1734 1759 0.250234 TTGGAGGCCGATGACTTCTG 59.750 55.000 0.00 0.00 0.00 3.02
1735 1760 0.614697 TGGAGGCCGATGACTTCTGA 60.615 55.000 0.00 0.00 0.00 3.27
1736 1761 0.103937 GGAGGCCGATGACTTCTGAG 59.896 60.000 0.00 0.00 0.00 3.35
1737 1762 0.529555 GAGGCCGATGACTTCTGAGC 60.530 60.000 0.00 0.00 0.00 4.26
1738 1763 1.219124 GGCCGATGACTTCTGAGCA 59.781 57.895 0.00 0.00 0.00 4.26
1739 1764 0.391661 GGCCGATGACTTCTGAGCAA 60.392 55.000 0.00 0.00 0.00 3.91
1740 1765 0.723981 GCCGATGACTTCTGAGCAAC 59.276 55.000 0.00 0.00 0.00 4.17
1741 1766 1.363744 CCGATGACTTCTGAGCAACC 58.636 55.000 0.00 0.00 0.00 3.77
1742 1767 1.363744 CGATGACTTCTGAGCAACCC 58.636 55.000 0.00 0.00 0.00 4.11
1743 1768 1.743996 GATGACTTCTGAGCAACCCC 58.256 55.000 0.00 0.00 0.00 4.95
1744 1769 0.036010 ATGACTTCTGAGCAACCCCG 60.036 55.000 0.00 0.00 0.00 5.73
1745 1770 1.371558 GACTTCTGAGCAACCCCGT 59.628 57.895 0.00 0.00 0.00 5.28
1746 1771 0.606604 GACTTCTGAGCAACCCCGTA 59.393 55.000 0.00 0.00 0.00 4.02
1747 1772 1.207329 GACTTCTGAGCAACCCCGTAT 59.793 52.381 0.00 0.00 0.00 3.06
1748 1773 1.628846 ACTTCTGAGCAACCCCGTATT 59.371 47.619 0.00 0.00 0.00 1.89
1749 1774 2.009774 CTTCTGAGCAACCCCGTATTG 58.990 52.381 0.00 0.00 0.00 1.90
1750 1775 1.271856 TCTGAGCAACCCCGTATTGA 58.728 50.000 0.00 0.00 0.00 2.57
1751 1776 1.837439 TCTGAGCAACCCCGTATTGAT 59.163 47.619 0.00 0.00 0.00 2.57
1752 1777 2.238646 TCTGAGCAACCCCGTATTGATT 59.761 45.455 0.00 0.00 0.00 2.57
1753 1778 2.614057 CTGAGCAACCCCGTATTGATTC 59.386 50.000 0.00 0.00 0.00 2.52
1754 1779 2.026729 TGAGCAACCCCGTATTGATTCA 60.027 45.455 0.00 0.00 0.00 2.57
1755 1780 3.214328 GAGCAACCCCGTATTGATTCAT 58.786 45.455 0.00 0.00 0.00 2.57
1756 1781 2.951642 AGCAACCCCGTATTGATTCATG 59.048 45.455 0.00 0.00 0.00 3.07
1757 1782 2.034558 GCAACCCCGTATTGATTCATGG 59.965 50.000 0.00 0.00 0.00 3.66
1758 1783 3.287222 CAACCCCGTATTGATTCATGGT 58.713 45.455 0.00 0.00 0.00 3.55
1759 1784 3.662759 ACCCCGTATTGATTCATGGTT 57.337 42.857 0.00 0.00 0.00 3.67
1760 1785 3.551846 ACCCCGTATTGATTCATGGTTC 58.448 45.455 0.00 0.00 0.00 3.62
1761 1786 2.548057 CCCCGTATTGATTCATGGTTCG 59.452 50.000 0.00 0.00 0.00 3.95
1762 1787 3.462982 CCCGTATTGATTCATGGTTCGA 58.537 45.455 0.00 0.00 0.00 3.71
1763 1788 4.065088 CCCGTATTGATTCATGGTTCGAT 58.935 43.478 0.00 0.00 0.00 3.59
1764 1789 4.515191 CCCGTATTGATTCATGGTTCGATT 59.485 41.667 0.00 0.00 0.00 3.34
1765 1790 5.334105 CCCGTATTGATTCATGGTTCGATTC 60.334 44.000 0.00 0.00 0.00 2.52
1766 1791 5.466728 CCGTATTGATTCATGGTTCGATTCT 59.533 40.000 0.00 0.00 0.00 2.40
1767 1792 6.017934 CCGTATTGATTCATGGTTCGATTCTT 60.018 38.462 0.00 0.00 0.00 2.52
1790 1815 2.290960 GGAGTTGGGAGTGGTTAGCAAT 60.291 50.000 0.00 0.00 0.00 3.56
1793 1818 3.826729 AGTTGGGAGTGGTTAGCAATTTC 59.173 43.478 0.00 0.00 0.00 2.17
1795 1820 3.420893 TGGGAGTGGTTAGCAATTTCTG 58.579 45.455 0.00 0.00 0.00 3.02
1809 1842 7.507733 AGCAATTTCTGATCATGGATTAGTC 57.492 36.000 0.00 0.00 29.47 2.59
1821 1858 9.906660 GATCATGGATTAGTCTAGTTGAGTTAG 57.093 37.037 0.00 0.00 0.00 2.34
1830 1867 5.780793 AGTCTAGTTGAGTTAGTTGGTCCAT 59.219 40.000 0.00 0.00 0.00 3.41
1832 1869 6.590677 GTCTAGTTGAGTTAGTTGGTCCATTC 59.409 42.308 0.00 0.00 0.00 2.67
1846 1883 3.141398 GTCCATTCTGTTGAGTTGCTCA 58.859 45.455 0.00 0.00 38.87 4.26
1856 1893 1.145803 GAGTTGCTCAACCGGTGTAC 58.854 55.000 8.52 0.00 42.06 2.90
1871 1908 3.002965 CGGTGTACATACTGCATACGAGA 59.997 47.826 0.00 0.00 0.00 4.04
1872 1909 4.537965 GGTGTACATACTGCATACGAGAG 58.462 47.826 0.00 0.00 0.00 3.20
1874 1911 5.450137 GGTGTACATACTGCATACGAGAGTT 60.450 44.000 0.00 0.00 46.40 3.01
1875 1912 6.034591 GTGTACATACTGCATACGAGAGTTT 58.965 40.000 0.00 0.00 46.40 2.66
1876 1913 6.530534 GTGTACATACTGCATACGAGAGTTTT 59.469 38.462 0.00 0.00 46.40 2.43
1877 1914 7.063074 GTGTACATACTGCATACGAGAGTTTTT 59.937 37.037 0.00 0.00 46.40 1.94
1898 1935 5.798015 TTTTTAACACAGTACAGACGCAA 57.202 34.783 0.00 0.00 0.00 4.85
1900 1937 1.217882 AACACAGTACAGACGCAAGC 58.782 50.000 0.00 0.00 45.62 4.01
1901 1938 0.939577 ACACAGTACAGACGCAAGCG 60.940 55.000 13.50 13.50 46.03 4.68
1902 1939 2.022129 ACAGTACAGACGCAAGCGC 61.022 57.895 15.09 0.00 44.19 5.92
1903 1940 1.734477 CAGTACAGACGCAAGCGCT 60.734 57.895 15.09 2.64 44.19 5.92
1904 1941 1.444553 AGTACAGACGCAAGCGCTC 60.445 57.895 12.06 11.06 44.19 5.03
1905 1942 1.733041 GTACAGACGCAAGCGCTCA 60.733 57.895 12.06 0.83 44.19 4.26
1906 1943 1.078759 GTACAGACGCAAGCGCTCAT 61.079 55.000 12.06 0.00 44.19 2.90
1907 1944 0.454196 TACAGACGCAAGCGCTCATA 59.546 50.000 12.06 5.16 44.19 2.15
1908 1945 0.179100 ACAGACGCAAGCGCTCATAT 60.179 50.000 12.06 0.00 44.19 1.78
1909 1946 1.067060 ACAGACGCAAGCGCTCATATA 59.933 47.619 12.06 0.00 44.19 0.86
1910 1947 1.453524 CAGACGCAAGCGCTCATATAC 59.546 52.381 12.06 1.00 44.19 1.47
1911 1948 1.067060 AGACGCAAGCGCTCATATACA 59.933 47.619 12.06 0.00 44.19 2.29
1912 1949 1.190323 GACGCAAGCGCTCATATACAC 59.810 52.381 12.06 0.00 44.19 2.90
1913 1950 0.159554 CGCAAGCGCTCATATACACG 59.840 55.000 12.06 2.00 35.30 4.49
1917 1954 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
1918 1955 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
1919 1956 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
1920 1957 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
1921 1958 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
1922 1959 2.923655 GCTCATATACACGCGCATACAT 59.076 45.455 5.73 0.00 0.00 2.29
1923 1960 3.367932 GCTCATATACACGCGCATACATT 59.632 43.478 5.73 0.00 0.00 2.71
1924 1961 4.490959 GCTCATATACACGCGCATACATTC 60.491 45.833 5.73 0.00 0.00 2.67
1925 1962 4.551388 TCATATACACGCGCATACATTCA 58.449 39.130 5.73 0.00 0.00 2.57
1926 1963 5.167845 TCATATACACGCGCATACATTCAT 58.832 37.500 5.73 0.00 0.00 2.57
1927 1964 5.288472 TCATATACACGCGCATACATTCATC 59.712 40.000 5.73 0.00 0.00 2.92
1928 1965 1.939974 ACACGCGCATACATTCATCT 58.060 45.000 5.73 0.00 0.00 2.90
1929 1966 1.860950 ACACGCGCATACATTCATCTC 59.139 47.619 5.73 0.00 0.00 2.75
1930 1967 2.130395 CACGCGCATACATTCATCTCT 58.870 47.619 5.73 0.00 0.00 3.10
1931 1968 2.097056 CACGCGCATACATTCATCTCTG 60.097 50.000 5.73 0.00 0.00 3.35
1932 1969 2.130395 CGCGCATACATTCATCTCTGT 58.870 47.619 8.75 0.00 0.00 3.41
1933 1970 2.097056 CGCGCATACATTCATCTCTGTG 60.097 50.000 8.75 0.00 0.00 3.66
1934 1971 3.126073 GCGCATACATTCATCTCTGTGA 58.874 45.455 0.30 0.00 0.00 3.58
1935 1972 3.557185 GCGCATACATTCATCTCTGTGAA 59.443 43.478 0.30 0.00 41.88 3.18
1936 1973 4.551603 GCGCATACATTCATCTCTGTGAAC 60.552 45.833 0.30 0.00 40.60 3.18
1937 1974 4.317628 CGCATACATTCATCTCTGTGAACG 60.318 45.833 0.00 0.00 40.60 3.95
1938 1975 4.551603 GCATACATTCATCTCTGTGAACGC 60.552 45.833 0.00 0.00 40.60 4.84
1939 1976 3.044235 ACATTCATCTCTGTGAACGCA 57.956 42.857 0.00 0.00 40.60 5.24
1940 1977 2.738846 ACATTCATCTCTGTGAACGCAC 59.261 45.455 0.00 0.00 45.35 5.34
1948 1985 2.350760 GTGAACGCACACACGCAC 60.351 61.111 7.53 0.00 44.51 5.34
1949 1986 2.815647 TGAACGCACACACGCACA 60.816 55.556 0.00 0.00 36.19 4.57
1950 1987 2.176926 TGAACGCACACACGCACAT 61.177 52.632 0.00 0.00 36.19 3.21
1951 1988 1.010125 GAACGCACACACGCACATT 60.010 52.632 0.00 0.00 36.19 2.71
1952 1989 0.991770 GAACGCACACACGCACATTC 60.992 55.000 0.00 0.00 36.19 2.67
1953 1990 1.436195 AACGCACACACGCACATTCT 61.436 50.000 0.00 0.00 36.19 2.40
1954 1991 0.598942 ACGCACACACGCACATTCTA 60.599 50.000 0.00 0.00 36.19 2.10
1955 1992 0.179250 CGCACACACGCACATTCTAC 60.179 55.000 0.00 0.00 0.00 2.59
1956 1993 1.148310 GCACACACGCACATTCTACT 58.852 50.000 0.00 0.00 0.00 2.57
1957 1994 1.531149 GCACACACGCACATTCTACTT 59.469 47.619 0.00 0.00 0.00 2.24
1958 1995 2.411547 GCACACACGCACATTCTACTTC 60.412 50.000 0.00 0.00 0.00 3.01
1959 1996 2.799978 CACACACGCACATTCTACTTCA 59.200 45.455 0.00 0.00 0.00 3.02
1960 1997 2.800544 ACACACGCACATTCTACTTCAC 59.199 45.455 0.00 0.00 0.00 3.18
1961 1998 2.157668 CACACGCACATTCTACTTCACC 59.842 50.000 0.00 0.00 0.00 4.02
1962 1999 2.224185 ACACGCACATTCTACTTCACCA 60.224 45.455 0.00 0.00 0.00 4.17
1963 2000 2.413112 CACGCACATTCTACTTCACCAG 59.587 50.000 0.00 0.00 0.00 4.00
1964 2001 2.002586 CGCACATTCTACTTCACCAGG 58.997 52.381 0.00 0.00 0.00 4.45
1965 2002 2.359900 GCACATTCTACTTCACCAGGG 58.640 52.381 0.00 0.00 0.00 4.45
1966 2003 2.359900 CACATTCTACTTCACCAGGGC 58.640 52.381 0.00 0.00 0.00 5.19
1967 2004 2.026822 CACATTCTACTTCACCAGGGCT 60.027 50.000 0.00 0.00 0.00 5.19
1968 2005 2.644798 ACATTCTACTTCACCAGGGCTT 59.355 45.455 0.00 0.00 0.00 4.35
1969 2006 2.859165 TTCTACTTCACCAGGGCTTG 57.141 50.000 0.00 0.00 0.00 4.01
1970 2007 2.024176 TCTACTTCACCAGGGCTTGA 57.976 50.000 0.00 0.00 0.00 3.02
1971 2008 2.334977 TCTACTTCACCAGGGCTTGAA 58.665 47.619 0.00 0.00 0.00 2.69
1972 2009 2.038557 TCTACTTCACCAGGGCTTGAAC 59.961 50.000 0.00 0.00 0.00 3.18
1973 2010 0.846693 ACTTCACCAGGGCTTGAACT 59.153 50.000 0.00 0.00 0.00 3.01
1974 2011 1.202818 ACTTCACCAGGGCTTGAACTC 60.203 52.381 0.00 0.00 0.00 3.01
1975 2012 1.072965 CTTCACCAGGGCTTGAACTCT 59.927 52.381 0.00 0.00 0.00 3.24
1976 2013 0.397941 TCACCAGGGCTTGAACTCTG 59.602 55.000 0.00 0.00 0.00 3.35
1977 2014 4.730487 CCAGGGCTTGAACTCTGG 57.270 61.111 0.00 0.00 40.46 3.86
1978 2015 1.763770 CCAGGGCTTGAACTCTGGT 59.236 57.895 2.12 0.00 41.21 4.00
1979 2016 0.607489 CCAGGGCTTGAACTCTGGTG 60.607 60.000 2.12 0.00 41.21 4.17
1980 2017 0.607489 CAGGGCTTGAACTCTGGTGG 60.607 60.000 0.00 0.00 0.00 4.61
1981 2018 1.303643 GGGCTTGAACTCTGGTGGG 60.304 63.158 0.00 0.00 0.00 4.61
1982 2019 1.973812 GGCTTGAACTCTGGTGGGC 60.974 63.158 0.00 0.00 0.00 5.36
1983 2020 1.073897 GCTTGAACTCTGGTGGGCT 59.926 57.895 0.00 0.00 0.00 5.19
1984 2021 1.239968 GCTTGAACTCTGGTGGGCTG 61.240 60.000 0.00 0.00 0.00 4.85
1985 2022 0.607489 CTTGAACTCTGGTGGGCTGG 60.607 60.000 0.00 0.00 0.00 4.85
1986 2023 1.059584 TTGAACTCTGGTGGGCTGGA 61.060 55.000 0.00 0.00 0.00 3.86
1987 2024 1.298014 GAACTCTGGTGGGCTGGAG 59.702 63.158 0.00 0.00 0.00 3.86
1988 2025 1.152030 AACTCTGGTGGGCTGGAGA 60.152 57.895 0.00 0.00 0.00 3.71
1989 2026 0.548682 AACTCTGGTGGGCTGGAGAT 60.549 55.000 0.00 0.00 0.00 2.75
1990 2027 0.339859 ACTCTGGTGGGCTGGAGATA 59.660 55.000 0.00 0.00 0.00 1.98
1991 2028 0.755686 CTCTGGTGGGCTGGAGATAC 59.244 60.000 0.00 0.00 0.00 2.24
1992 2029 0.691078 TCTGGTGGGCTGGAGATACC 60.691 60.000 0.00 0.00 39.54 2.73
2005 2042 5.942977 TGGAGATACCATAGTCCCTCTAA 57.057 43.478 0.00 0.00 44.64 2.10
2006 2043 5.642165 TGGAGATACCATAGTCCCTCTAAC 58.358 45.833 0.00 0.00 44.64 2.34
2007 2044 5.018149 GGAGATACCATAGTCCCTCTAACC 58.982 50.000 0.00 0.00 38.79 2.85
2008 2045 5.459241 GGAGATACCATAGTCCCTCTAACCA 60.459 48.000 0.00 0.00 38.79 3.67
2009 2046 6.234404 AGATACCATAGTCCCTCTAACCAT 57.766 41.667 0.00 0.00 31.94 3.55
2010 2047 6.257586 AGATACCATAGTCCCTCTAACCATC 58.742 44.000 0.00 0.00 31.94 3.51
2011 2048 3.588569 ACCATAGTCCCTCTAACCATCC 58.411 50.000 0.00 0.00 31.94 3.51
2012 2049 3.051341 ACCATAGTCCCTCTAACCATCCA 60.051 47.826 0.00 0.00 31.94 3.41
2013 2050 3.973973 CCATAGTCCCTCTAACCATCCAA 59.026 47.826 0.00 0.00 31.94 3.53
2014 2051 4.202367 CCATAGTCCCTCTAACCATCCAAC 60.202 50.000 0.00 0.00 31.94 3.77
2015 2052 2.197465 AGTCCCTCTAACCATCCAACC 58.803 52.381 0.00 0.00 0.00 3.77
2016 2053 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
2017 2054 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
2018 2055 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
2019 2056 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
2020 2057 2.356125 CCTCTAACCATCCAACCACAGG 60.356 54.545 0.00 0.00 0.00 4.00
2021 2058 2.305927 CTCTAACCATCCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
2032 2069 2.540145 CCACAGGTTGGTTCGCTAC 58.460 57.895 0.00 0.00 41.10 3.58
2033 2070 0.034896 CCACAGGTTGGTTCGCTACT 59.965 55.000 0.00 0.00 41.10 2.57
2034 2071 1.148310 CACAGGTTGGTTCGCTACTG 58.852 55.000 0.00 0.00 0.00 2.74
2035 2072 0.602905 ACAGGTTGGTTCGCTACTGC 60.603 55.000 0.00 0.00 0.00 4.40
2036 2073 0.602638 CAGGTTGGTTCGCTACTGCA 60.603 55.000 0.00 0.00 39.64 4.41
2037 2074 0.324943 AGGTTGGTTCGCTACTGCAT 59.675 50.000 0.00 0.00 39.64 3.96
2038 2075 1.553248 AGGTTGGTTCGCTACTGCATA 59.447 47.619 0.00 0.00 39.64 3.14
2039 2076 1.664151 GGTTGGTTCGCTACTGCATAC 59.336 52.381 0.00 0.00 39.64 2.39
2040 2077 2.343101 GTTGGTTCGCTACTGCATACA 58.657 47.619 0.00 0.00 39.64 2.29
2041 2078 2.739913 GTTGGTTCGCTACTGCATACAA 59.260 45.455 0.00 0.00 39.64 2.41
2042 2079 2.616960 TGGTTCGCTACTGCATACAAG 58.383 47.619 0.00 0.00 39.64 3.16
2043 2080 2.232696 TGGTTCGCTACTGCATACAAGA 59.767 45.455 0.00 0.00 39.64 3.02
2044 2081 2.860735 GGTTCGCTACTGCATACAAGAG 59.139 50.000 0.00 0.00 39.64 2.85
2066 2103 8.425577 AGAGTTATATGTACAACATGCTTGAC 57.574 34.615 6.60 8.36 39.53 3.18
2091 2128 5.574055 TCTTCGATGTGTACGTGTAAAATCC 59.426 40.000 0.00 0.00 0.00 3.01
2109 2146 9.620660 GTAAAATCCGTATTGTGAAAACTCATT 57.379 29.630 0.00 0.00 0.00 2.57
2111 2148 9.541143 AAAATCCGTATTGTGAAAACTCATTTT 57.459 25.926 0.00 0.00 40.83 1.82
2112 2149 9.541143 AAATCCGTATTGTGAAAACTCATTTTT 57.459 25.926 0.00 0.00 38.17 1.94
2136 2173 8.570068 TTTTAGGGGTGTGAAAACTCATATAC 57.430 34.615 0.00 0.00 0.00 1.47
2137 2174 4.766375 AGGGGTGTGAAAACTCATATACG 58.234 43.478 0.00 0.00 0.00 3.06
2143 2180 6.414079 GTGTGAAAACTCATATACGCAGATG 58.586 40.000 0.00 0.00 0.00 2.90
2151 2188 2.509052 TATACGCAGATGCTGACACC 57.491 50.000 2.95 0.00 39.32 4.16
2175 2215 5.799936 CGCATGAAAGTACTACAATTTTGGG 59.200 40.000 0.00 0.72 0.00 4.12
2226 2266 1.335324 GCATTGACGCTCAGCTTTTGT 60.335 47.619 0.00 0.00 0.00 2.83
2228 2268 3.374745 CATTGACGCTCAGCTTTTGTTT 58.625 40.909 0.00 0.00 0.00 2.83
2243 2283 5.391416 GCTTTTGTTTGCTGCAAGGTTAAAA 60.391 36.000 15.39 17.18 0.00 1.52
2247 2287 5.669477 TGTTTGCTGCAAGGTTAAAAGATT 58.331 33.333 15.39 0.00 0.00 2.40
2252 2292 5.007528 TGCTGCAAGGTTAAAAGATTTTTGC 59.992 36.000 0.00 0.99 32.45 3.68
2253 2293 5.560760 GCTGCAAGGTTAAAAGATTTTTGCC 60.561 40.000 0.00 6.07 31.39 4.52
2254 2294 5.679601 TGCAAGGTTAAAAGATTTTTGCCT 58.320 33.333 8.42 7.73 35.82 4.75
2255 2295 5.757808 TGCAAGGTTAAAAGATTTTTGCCTC 59.242 36.000 11.13 4.33 34.36 4.70
2268 2309 4.836125 TTTTGCCTCTAGTTCAGCTTTG 57.164 40.909 0.00 0.00 0.00 2.77
2280 2718 0.109132 CAGCTTTGATTGCCCGAACC 60.109 55.000 0.00 0.00 0.00 3.62
2345 3170 7.459795 TTTTTGAATAGATGTGGTATGTGCA 57.540 32.000 0.00 0.00 0.00 4.57
2384 3209 8.389603 CAAATTTGGTATATGGTGTTTGAATGC 58.610 33.333 10.49 0.00 0.00 3.56
2404 3229 9.708092 TGAATGCTTGAATTTGAAATATTGTCA 57.292 25.926 0.00 0.00 0.00 3.58
2480 3305 3.243367 TGGTGCTAAAACTTGACACATGC 60.243 43.478 0.00 0.00 32.89 4.06
2501 3326 3.859961 GCTATAGTATATGGCTGTGTGCG 59.140 47.826 0.84 0.00 44.05 5.34
2520 3345 1.919816 TCACCTGATGCAGAGGCCA 60.920 57.895 5.01 0.00 40.13 5.36
2521 3346 1.451567 CACCTGATGCAGAGGCCAG 60.452 63.158 5.01 5.43 40.13 4.85
2523 3348 2.192443 CTGATGCAGAGGCCAGGG 59.808 66.667 5.01 0.00 40.13 4.45
2590 3791 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2592 3793 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2593 3794 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2596 3797 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2601 3802 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2602 3803 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2605 3806 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2606 3807 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2608 3809 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2610 3811 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2611 3812 6.037610 ACAACAACAACAACAACAACAACAAT 59.962 30.769 0.00 0.00 0.00 2.71
2613 3814 7.715265 ACAACAACAACAACAACAACAATAA 57.285 28.000 0.00 0.00 0.00 1.40
2614 3815 8.316640 ACAACAACAACAACAACAACAATAAT 57.683 26.923 0.00 0.00 0.00 1.28
2645 5468 8.814038 ATATCCACTAATGAAGGGATTATTGC 57.186 34.615 0.00 0.00 36.89 3.56
2647 5470 6.672593 TCCACTAATGAAGGGATTATTGCTT 58.327 36.000 0.00 0.00 0.00 3.91
2648 5471 6.772716 TCCACTAATGAAGGGATTATTGCTTC 59.227 38.462 0.00 0.00 0.00 3.86
2649 5472 6.774656 CCACTAATGAAGGGATTATTGCTTCT 59.225 38.462 0.00 0.00 0.00 2.85
2650 5473 7.255381 CCACTAATGAAGGGATTATTGCTTCTG 60.255 40.741 0.00 0.00 0.00 3.02
2651 5474 5.526506 AATGAAGGGATTATTGCTTCTGC 57.473 39.130 0.00 0.00 40.20 4.26
2652 5475 3.290710 TGAAGGGATTATTGCTTCTGCC 58.709 45.455 0.00 0.00 38.71 4.85
2653 5476 2.371658 AGGGATTATTGCTTCTGCCC 57.628 50.000 0.00 0.00 38.71 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.014297 GCCAGAATTATGGTAGTTTTATGCTAT 57.986 33.333 19.89 0.00 42.75 2.97
41 42 7.996066 TGCCAGAATTATGGTAGTTTTATGCTA 59.004 33.333 19.89 0.00 42.75 3.49
42 43 6.833416 TGCCAGAATTATGGTAGTTTTATGCT 59.167 34.615 19.89 0.00 42.75 3.79
43 44 7.038154 TGCCAGAATTATGGTAGTTTTATGC 57.962 36.000 19.89 2.73 42.75 3.14
44 45 8.137437 CCTTGCCAGAATTATGGTAGTTTTATG 58.863 37.037 19.89 2.04 42.75 1.90
45 46 7.287696 CCCTTGCCAGAATTATGGTAGTTTTAT 59.712 37.037 19.89 0.00 42.75 1.40
46 47 6.605594 CCCTTGCCAGAATTATGGTAGTTTTA 59.394 38.462 19.89 0.00 42.75 1.52
47 48 5.422012 CCCTTGCCAGAATTATGGTAGTTTT 59.578 40.000 19.89 0.00 42.75 2.43
48 49 4.956075 CCCTTGCCAGAATTATGGTAGTTT 59.044 41.667 19.89 0.00 42.75 2.66
49 50 4.017499 ACCCTTGCCAGAATTATGGTAGTT 60.017 41.667 19.89 5.31 42.75 2.24
50 51 3.527665 ACCCTTGCCAGAATTATGGTAGT 59.472 43.478 19.89 7.74 42.75 2.73
51 52 4.170468 ACCCTTGCCAGAATTATGGTAG 57.830 45.455 19.89 16.13 42.75 3.18
52 53 4.229582 AGAACCCTTGCCAGAATTATGGTA 59.770 41.667 19.89 13.39 42.75 3.25
53 54 3.011708 AGAACCCTTGCCAGAATTATGGT 59.988 43.478 19.89 0.00 42.75 3.55
54 55 3.382546 CAGAACCCTTGCCAGAATTATGG 59.617 47.826 14.99 14.99 43.72 2.74
55 56 4.272489 TCAGAACCCTTGCCAGAATTATG 58.728 43.478 0.00 0.00 0.00 1.90
56 57 4.591321 TCAGAACCCTTGCCAGAATTAT 57.409 40.909 0.00 0.00 0.00 1.28
57 58 4.380843 TTCAGAACCCTTGCCAGAATTA 57.619 40.909 0.00 0.00 0.00 1.40
58 59 2.978156 TCAGAACCCTTGCCAGAATT 57.022 45.000 0.00 0.00 0.00 2.17
59 60 2.978156 TTCAGAACCCTTGCCAGAAT 57.022 45.000 0.00 0.00 0.00 2.40
60 61 2.746279 TTTCAGAACCCTTGCCAGAA 57.254 45.000 0.00 0.00 0.00 3.02
61 62 2.746279 TTTTCAGAACCCTTGCCAGA 57.254 45.000 0.00 0.00 0.00 3.86
62 63 4.341366 AATTTTTCAGAACCCTTGCCAG 57.659 40.909 0.00 0.00 0.00 4.85
63 64 4.039852 GGTAATTTTTCAGAACCCTTGCCA 59.960 41.667 0.00 0.00 0.00 4.92
64 65 4.566004 GGTAATTTTTCAGAACCCTTGCC 58.434 43.478 0.00 0.00 0.00 4.52
65 66 4.234574 CGGTAATTTTTCAGAACCCTTGC 58.765 43.478 0.00 0.00 0.00 4.01
66 67 4.022329 AGCGGTAATTTTTCAGAACCCTTG 60.022 41.667 0.00 0.00 0.00 3.61
67 68 4.149598 AGCGGTAATTTTTCAGAACCCTT 58.850 39.130 0.00 0.00 0.00 3.95
68 69 3.763057 AGCGGTAATTTTTCAGAACCCT 58.237 40.909 0.00 0.00 0.00 4.34
69 70 4.514781 AAGCGGTAATTTTTCAGAACCC 57.485 40.909 0.00 0.00 0.00 4.11
70 71 6.292649 CCAAAAAGCGGTAATTTTTCAGAACC 60.293 38.462 0.00 0.00 37.67 3.62
71 72 6.477360 TCCAAAAAGCGGTAATTTTTCAGAAC 59.523 34.615 0.00 0.00 37.67 3.01
72 73 6.574350 TCCAAAAAGCGGTAATTTTTCAGAA 58.426 32.000 0.00 0.00 37.67 3.02
73 74 6.150396 TCCAAAAAGCGGTAATTTTTCAGA 57.850 33.333 0.00 0.00 37.67 3.27
74 75 5.983118 ACTCCAAAAAGCGGTAATTTTTCAG 59.017 36.000 0.00 0.00 37.67 3.02
75 76 5.908341 ACTCCAAAAAGCGGTAATTTTTCA 58.092 33.333 0.00 0.00 37.67 2.69
76 77 7.933728 TTACTCCAAAAAGCGGTAATTTTTC 57.066 32.000 0.00 0.00 37.67 2.29
77 78 8.896320 ATTTACTCCAAAAAGCGGTAATTTTT 57.104 26.923 0.00 0.00 39.73 1.94
78 79 8.896320 AATTTACTCCAAAAAGCGGTAATTTT 57.104 26.923 0.00 0.00 0.00 1.82
79 80 9.634163 CTAATTTACTCCAAAAAGCGGTAATTT 57.366 29.630 0.00 0.00 0.00 1.82
80 81 7.758076 GCTAATTTACTCCAAAAAGCGGTAATT 59.242 33.333 0.00 0.00 32.67 1.40
81 82 7.094118 TGCTAATTTACTCCAAAAAGCGGTAAT 60.094 33.333 0.00 0.00 39.95 1.89
82 83 6.207025 TGCTAATTTACTCCAAAAAGCGGTAA 59.793 34.615 0.00 0.00 39.95 2.85
83 84 5.706369 TGCTAATTTACTCCAAAAAGCGGTA 59.294 36.000 0.00 0.00 39.95 4.02
84 85 4.521256 TGCTAATTTACTCCAAAAAGCGGT 59.479 37.500 0.00 0.00 39.95 5.68
85 86 5.054390 TGCTAATTTACTCCAAAAAGCGG 57.946 39.130 0.00 0.00 39.95 5.52
86 87 5.004726 GCATGCTAATTTACTCCAAAAAGCG 59.995 40.000 11.37 0.00 39.95 4.68
87 88 6.101997 AGCATGCTAATTTACTCCAAAAAGC 58.898 36.000 21.21 0.00 38.63 3.51
88 89 6.753744 GGAGCATGCTAATTTACTCCAAAAAG 59.246 38.462 22.74 0.00 42.64 2.27
89 90 6.630071 GGAGCATGCTAATTTACTCCAAAAA 58.370 36.000 22.74 0.00 42.64 1.94
90 91 6.207691 GGAGCATGCTAATTTACTCCAAAA 57.792 37.500 22.74 0.00 42.64 2.44
91 92 5.835113 GGAGCATGCTAATTTACTCCAAA 57.165 39.130 22.74 0.00 42.64 3.28
147 148 1.107114 CGGTCTGAGCAGATGGTACT 58.893 55.000 7.70 0.00 39.97 2.73
153 154 1.800805 CACAAACGGTCTGAGCAGAT 58.199 50.000 7.70 0.00 39.97 2.90
173 175 1.429148 GCTGATTACGACGCTTGGGG 61.429 60.000 0.00 0.00 0.00 4.96
185 187 2.114670 GGCTTGCGGCAGCTGATTA 61.115 57.895 20.43 0.00 45.42 1.75
227 229 3.530260 GACGATCGCCCGGGGTTA 61.530 66.667 25.28 3.18 0.00 2.85
233 235 2.658593 GTCATGGACGATCGCCCG 60.659 66.667 16.60 11.11 0.00 6.13
236 238 0.458543 ACAGTGTCATGGACGATCGC 60.459 55.000 16.60 8.04 34.95 4.58
240 242 0.038251 GCAGACAGTGTCATGGACGA 60.038 55.000 24.73 0.00 34.95 4.20
241 243 0.037882 AGCAGACAGTGTCATGGACG 60.038 55.000 24.73 7.16 34.95 4.79
242 244 2.232452 AGTAGCAGACAGTGTCATGGAC 59.768 50.000 24.73 15.98 34.60 4.02
276 278 2.383527 GGCTGACAGCGAGTTTCGG 61.384 63.158 20.82 0.00 43.62 4.30
292 294 2.795175 TTAATCGATCGAGACCTGGC 57.205 50.000 23.84 0.00 0.00 4.85
307 309 9.573133 GCATGGCGAGCTTAATAATTAATTAAT 57.427 29.630 11.80 4.81 38.93 1.40
308 310 8.572185 TGCATGGCGAGCTTAATAATTAATTAA 58.428 29.630 11.80 0.00 37.64 1.40
309 311 8.105097 TGCATGGCGAGCTTAATAATTAATTA 57.895 30.769 10.27 10.27 0.00 1.40
310 312 6.980593 TGCATGGCGAGCTTAATAATTAATT 58.019 32.000 5.89 5.89 0.00 1.40
311 313 6.573664 TGCATGGCGAGCTTAATAATTAAT 57.426 33.333 0.00 0.00 0.00 1.40
312 314 6.380995 CATGCATGGCGAGCTTAATAATTAA 58.619 36.000 19.40 0.00 0.00 1.40
313 315 5.619757 GCATGCATGGCGAGCTTAATAATTA 60.620 40.000 27.34 0.00 0.00 1.40
314 316 4.801891 CATGCATGGCGAGCTTAATAATT 58.198 39.130 19.40 0.00 0.00 1.40
315 317 3.366679 GCATGCATGGCGAGCTTAATAAT 60.367 43.478 27.34 0.00 0.00 1.28
316 318 2.030893 GCATGCATGGCGAGCTTAATAA 60.031 45.455 27.34 0.00 0.00 1.40
317 319 1.536766 GCATGCATGGCGAGCTTAATA 59.463 47.619 27.34 0.00 0.00 0.98
318 320 0.313043 GCATGCATGGCGAGCTTAAT 59.687 50.000 27.34 0.00 0.00 1.40
320 322 1.451747 TGCATGCATGGCGAGCTTA 60.452 52.632 27.34 1.28 33.35 3.09
322 324 3.515286 GTGCATGCATGGCGAGCT 61.515 61.111 25.64 0.00 33.35 4.09
323 325 4.564116 GGTGCATGCATGGCGAGC 62.564 66.667 25.64 13.57 0.00 5.03
324 326 2.402282 GATGGTGCATGCATGGCGAG 62.402 60.000 25.64 2.48 0.00 5.03
325 327 2.440613 ATGGTGCATGCATGGCGA 60.441 55.556 25.64 8.90 0.00 5.54
326 328 2.027024 GATGGTGCATGCATGGCG 59.973 61.111 25.64 3.29 0.00 5.69
363 367 0.739561 CTCCTAGTCGAAGGTTCCCG 59.260 60.000 3.11 0.00 37.91 5.14
404 412 5.957798 ACAGTAAAAATGATGCATGAGTGG 58.042 37.500 2.46 0.00 0.00 4.00
418 426 8.776470 CCAGGACGAAAATAGTAACAGTAAAAA 58.224 33.333 0.00 0.00 0.00 1.94
419 427 7.933033 ACCAGGACGAAAATAGTAACAGTAAAA 59.067 33.333 0.00 0.00 0.00 1.52
420 428 7.444299 ACCAGGACGAAAATAGTAACAGTAAA 58.556 34.615 0.00 0.00 0.00 2.01
421 429 6.996509 ACCAGGACGAAAATAGTAACAGTAA 58.003 36.000 0.00 0.00 0.00 2.24
422 430 6.594788 ACCAGGACGAAAATAGTAACAGTA 57.405 37.500 0.00 0.00 0.00 2.74
423 431 5.479124 ACCAGGACGAAAATAGTAACAGT 57.521 39.130 0.00 0.00 0.00 3.55
424 432 6.796705 AAACCAGGACGAAAATAGTAACAG 57.203 37.500 0.00 0.00 0.00 3.16
425 433 8.851541 AATAAACCAGGACGAAAATAGTAACA 57.148 30.769 0.00 0.00 0.00 2.41
429 437 7.767659 GGACTAATAAACCAGGACGAAAATAGT 59.232 37.037 0.00 0.00 0.00 2.12
430 438 7.985752 AGGACTAATAAACCAGGACGAAAATAG 59.014 37.037 0.00 0.00 0.00 1.73
431 439 7.854337 AGGACTAATAAACCAGGACGAAAATA 58.146 34.615 0.00 0.00 0.00 1.40
432 440 6.718294 AGGACTAATAAACCAGGACGAAAAT 58.282 36.000 0.00 0.00 0.00 1.82
433 441 6.117975 AGGACTAATAAACCAGGACGAAAA 57.882 37.500 0.00 0.00 0.00 2.29
434 442 5.750352 AGGACTAATAAACCAGGACGAAA 57.250 39.130 0.00 0.00 0.00 3.46
435 443 5.482878 AGAAGGACTAATAAACCAGGACGAA 59.517 40.000 0.00 0.00 0.00 3.85
436 444 5.021458 AGAAGGACTAATAAACCAGGACGA 58.979 41.667 0.00 0.00 0.00 4.20
437 445 5.340439 AGAAGGACTAATAAACCAGGACG 57.660 43.478 0.00 0.00 0.00 4.79
438 446 9.984190 CTATAAGAAGGACTAATAAACCAGGAC 57.016 37.037 0.00 0.00 0.00 3.85
439 447 9.725206 ACTATAAGAAGGACTAATAAACCAGGA 57.275 33.333 0.00 0.00 0.00 3.86
450 458 9.924650 GTTTGACTCAAACTATAAGAAGGACTA 57.075 33.333 22.37 0.00 46.84 2.59
451 459 8.834749 GTTTGACTCAAACTATAAGAAGGACT 57.165 34.615 22.37 0.00 46.84 3.85
465 473 9.883142 AAATCAATGGTTAAAGTTTGACTCAAA 57.117 25.926 10.04 0.00 31.45 2.69
514 522 9.421399 TGACTCAATGATACTATTTCTGAGGTA 57.579 33.333 0.00 0.00 0.00 3.08
515 523 8.311395 TGACTCAATGATACTATTTCTGAGGT 57.689 34.615 0.00 0.00 0.00 3.85
516 524 9.605275 TTTGACTCAATGATACTATTTCTGAGG 57.395 33.333 0.00 0.00 0.00 3.86
584 592 7.946237 CGTTAATCGTACGTTTGACTAACAAAT 59.054 33.333 23.23 2.77 41.09 2.32
585 593 7.272951 CGTTAATCGTACGTTTGACTAACAAA 58.727 34.615 23.23 7.24 39.08 2.83
586 594 6.796216 CGTTAATCGTACGTTTGACTAACAA 58.204 36.000 23.23 7.81 34.08 2.83
587 595 6.361297 CGTTAATCGTACGTTTGACTAACA 57.639 37.500 23.23 1.29 34.08 2.41
602 610 7.237871 TCATATTTTGTGTCCAACGTTAATCG 58.762 34.615 0.00 0.00 46.00 3.34
603 611 8.958175 TTCATATTTTGTGTCCAACGTTAATC 57.042 30.769 0.00 0.00 0.00 1.75
604 612 8.026607 CCTTCATATTTTGTGTCCAACGTTAAT 58.973 33.333 0.00 0.00 0.00 1.40
605 613 7.364200 CCTTCATATTTTGTGTCCAACGTTAA 58.636 34.615 0.00 0.00 0.00 2.01
606 614 6.072397 CCCTTCATATTTTGTGTCCAACGTTA 60.072 38.462 0.00 0.00 0.00 3.18
607 615 5.278758 CCCTTCATATTTTGTGTCCAACGTT 60.279 40.000 0.00 0.00 0.00 3.99
608 616 4.217550 CCCTTCATATTTTGTGTCCAACGT 59.782 41.667 0.00 0.00 0.00 3.99
609 617 4.457603 TCCCTTCATATTTTGTGTCCAACG 59.542 41.667 0.00 0.00 0.00 4.10
610 618 5.336451 GGTCCCTTCATATTTTGTGTCCAAC 60.336 44.000 0.00 0.00 0.00 3.77
611 619 4.770010 GGTCCCTTCATATTTTGTGTCCAA 59.230 41.667 0.00 0.00 0.00 3.53
612 620 4.202620 TGGTCCCTTCATATTTTGTGTCCA 60.203 41.667 0.00 0.00 0.00 4.02
613 621 4.340617 TGGTCCCTTCATATTTTGTGTCC 58.659 43.478 0.00 0.00 0.00 4.02
614 622 5.975693 TTGGTCCCTTCATATTTTGTGTC 57.024 39.130 0.00 0.00 0.00 3.67
615 623 8.311109 GTTTATTGGTCCCTTCATATTTTGTGT 58.689 33.333 0.00 0.00 0.00 3.72
616 624 8.310382 TGTTTATTGGTCCCTTCATATTTTGTG 58.690 33.333 0.00 0.00 0.00 3.33
617 625 8.429237 TGTTTATTGGTCCCTTCATATTTTGT 57.571 30.769 0.00 0.00 0.00 2.83
618 626 9.369904 CTTGTTTATTGGTCCCTTCATATTTTG 57.630 33.333 0.00 0.00 0.00 2.44
619 627 9.100197 ACTTGTTTATTGGTCCCTTCATATTTT 57.900 29.630 0.00 0.00 0.00 1.82
620 628 8.664669 ACTTGTTTATTGGTCCCTTCATATTT 57.335 30.769 0.00 0.00 0.00 1.40
621 629 8.531146 CAACTTGTTTATTGGTCCCTTCATATT 58.469 33.333 0.00 0.00 0.00 1.28
622 630 7.673926 ACAACTTGTTTATTGGTCCCTTCATAT 59.326 33.333 0.00 0.00 0.00 1.78
623 631 7.007723 ACAACTTGTTTATTGGTCCCTTCATA 58.992 34.615 0.00 0.00 0.00 2.15
624 632 5.838521 ACAACTTGTTTATTGGTCCCTTCAT 59.161 36.000 0.00 0.00 0.00 2.57
625 633 5.205056 ACAACTTGTTTATTGGTCCCTTCA 58.795 37.500 0.00 0.00 0.00 3.02
626 634 5.300792 TGACAACTTGTTTATTGGTCCCTTC 59.699 40.000 0.00 0.00 0.00 3.46
627 635 5.205056 TGACAACTTGTTTATTGGTCCCTT 58.795 37.500 0.00 0.00 0.00 3.95
628 636 4.798882 TGACAACTTGTTTATTGGTCCCT 58.201 39.130 0.00 0.00 0.00 4.20
629 637 5.722021 ATGACAACTTGTTTATTGGTCCC 57.278 39.130 0.00 0.00 0.00 4.46
630 638 6.512297 ACAATGACAACTTGTTTATTGGTCC 58.488 36.000 23.12 0.00 38.44 4.46
631 639 7.491048 ACAACAATGACAACTTGTTTATTGGTC 59.509 33.333 23.12 8.29 42.58 4.02
632 640 7.327214 ACAACAATGACAACTTGTTTATTGGT 58.673 30.769 23.12 18.73 42.58 3.67
633 641 7.769272 ACAACAATGACAACTTGTTTATTGG 57.231 32.000 23.12 15.14 42.58 3.16
634 642 8.655092 ACAACAACAATGACAACTTGTTTATTG 58.345 29.630 20.37 20.37 42.58 1.90
635 643 8.770438 ACAACAACAATGACAACTTGTTTATT 57.230 26.923 4.73 0.00 42.58 1.40
636 644 8.770438 AACAACAACAATGACAACTTGTTTAT 57.230 26.923 4.73 0.00 42.58 1.40
652 660 9.239002 CTAAAACGAAATGGATAAACAACAACA 57.761 29.630 0.00 0.00 0.00 3.33
654 662 9.453325 GTCTAAAACGAAATGGATAAACAACAA 57.547 29.630 0.00 0.00 0.00 2.83
672 680 5.107065 CCATGAAGAGTCAACGGTCTAAAAC 60.107 44.000 0.00 0.00 37.30 2.43
677 685 1.338200 GCCATGAAGAGTCAACGGTCT 60.338 52.381 0.00 0.00 37.30 3.85
680 688 0.321564 TGGCCATGAAGAGTCAACGG 60.322 55.000 0.00 0.00 37.30 4.44
767 775 2.260434 GCATTGCACTGCACTGGG 59.740 61.111 22.74 5.12 39.16 4.45
790 798 2.248248 TGTCAACGGAGACAAGGAGAT 58.752 47.619 9.39 0.00 44.92 2.75
852 860 1.202639 TGTGCAAGAGGTTCGTGATGT 60.203 47.619 0.00 0.00 0.00 3.06
855 863 0.531974 GGTGTGCAAGAGGTTCGTGA 60.532 55.000 0.00 0.00 0.00 4.35
858 866 0.034059 AGAGGTGTGCAAGAGGTTCG 59.966 55.000 0.00 0.00 0.00 3.95
878 886 4.080299 AGCCTTTTATAGTTGGGAGTCAGG 60.080 45.833 0.00 0.00 0.00 3.86
913 921 1.116536 TGGTCTGTTGGTACGAGCCA 61.117 55.000 0.00 0.00 36.62 4.75
1057 1082 2.985847 GGTCTTGGTGGCCACTGC 60.986 66.667 33.91 19.70 40.97 4.40
1257 1282 0.460987 GCAGCACGAAGTAGAGCCAT 60.461 55.000 0.00 0.00 41.61 4.40
1416 1441 3.793144 GCCTTCCGTCGCTTGCTG 61.793 66.667 0.00 0.00 0.00 4.41
1452 1477 3.028130 TCGTCAGCGACAACGAGT 58.972 55.556 8.91 0.00 42.49 4.18
1464 1489 3.515286 GGTCCGGCGATCTCGTCA 61.515 66.667 9.30 0.00 45.47 4.35
1480 1505 1.364171 GATCCGATCCACCGTCTGG 59.636 63.158 0.00 0.00 42.29 3.86
1661 1686 6.948353 AGAATCGAACCATTGAATCAATACG 58.052 36.000 8.29 11.55 32.35 3.06
1674 1699 2.552155 CCAACTCCCAAGAATCGAACCA 60.552 50.000 0.00 0.00 0.00 3.67
1687 1712 4.660938 AGCGTTGGCCCAACTCCC 62.661 66.667 23.46 11.94 41.62 4.30
1688 1713 3.365265 CAGCGTTGGCCCAACTCC 61.365 66.667 23.46 14.29 41.62 3.85
1689 1714 2.281484 TCAGCGTTGGCCCAACTC 60.281 61.111 23.46 16.49 41.62 3.01
1690 1715 2.281761 CTCAGCGTTGGCCCAACT 60.282 61.111 23.46 3.69 41.62 3.16
1691 1716 4.043200 GCTCAGCGTTGGCCCAAC 62.043 66.667 16.88 16.88 41.24 3.77
1692 1717 4.269523 AGCTCAGCGTTGGCCCAA 62.270 61.111 0.00 0.00 41.24 4.12
1693 1718 4.704833 GAGCTCAGCGTTGGCCCA 62.705 66.667 9.40 0.00 41.24 5.36
1695 1720 4.704833 TGGAGCTCAGCGTTGGCC 62.705 66.667 17.19 0.00 41.24 5.36
1696 1721 3.426568 GTGGAGCTCAGCGTTGGC 61.427 66.667 17.19 1.92 40.37 4.52
1697 1722 0.886490 AAAGTGGAGCTCAGCGTTGG 60.886 55.000 17.19 0.00 0.00 3.77
1698 1723 0.236711 CAAAGTGGAGCTCAGCGTTG 59.763 55.000 17.19 16.54 0.00 4.10
1699 1724 0.886490 CCAAAGTGGAGCTCAGCGTT 60.886 55.000 17.19 8.92 40.96 4.84
1700 1725 1.302033 CCAAAGTGGAGCTCAGCGT 60.302 57.895 17.19 2.63 40.96 5.07
1701 1726 1.004560 TCCAAAGTGGAGCTCAGCG 60.005 57.895 17.19 0.00 42.67 5.18
1709 1734 1.198094 TCATCGGCCTCCAAAGTGGA 61.198 55.000 0.00 0.00 45.98 4.02
1710 1735 1.026718 GTCATCGGCCTCCAAAGTGG 61.027 60.000 0.00 0.00 39.43 4.00
1711 1736 0.036010 AGTCATCGGCCTCCAAAGTG 60.036 55.000 0.00 0.00 0.00 3.16
1712 1737 0.693049 AAGTCATCGGCCTCCAAAGT 59.307 50.000 0.00 0.00 0.00 2.66
1713 1738 1.065854 AGAAGTCATCGGCCTCCAAAG 60.066 52.381 0.00 0.00 0.00 2.77
1714 1739 0.984230 AGAAGTCATCGGCCTCCAAA 59.016 50.000 0.00 0.00 0.00 3.28
1715 1740 0.250234 CAGAAGTCATCGGCCTCCAA 59.750 55.000 0.00 0.00 0.00 3.53
1716 1741 0.614697 TCAGAAGTCATCGGCCTCCA 60.615 55.000 0.00 0.00 0.00 3.86
1717 1742 0.103937 CTCAGAAGTCATCGGCCTCC 59.896 60.000 0.00 0.00 0.00 4.30
1718 1743 0.529555 GCTCAGAAGTCATCGGCCTC 60.530 60.000 0.00 0.00 0.00 4.70
1719 1744 1.260538 TGCTCAGAAGTCATCGGCCT 61.261 55.000 0.00 0.00 0.00 5.19
1720 1745 0.391661 TTGCTCAGAAGTCATCGGCC 60.392 55.000 0.00 0.00 0.00 6.13
1721 1746 0.723981 GTTGCTCAGAAGTCATCGGC 59.276 55.000 0.00 0.00 0.00 5.54
1722 1747 1.363744 GGTTGCTCAGAAGTCATCGG 58.636 55.000 0.00 0.00 0.00 4.18
1723 1748 1.363744 GGGTTGCTCAGAAGTCATCG 58.636 55.000 0.00 0.00 0.00 3.84
1724 1749 1.743996 GGGGTTGCTCAGAAGTCATC 58.256 55.000 0.00 0.00 0.00 2.92
1725 1750 0.036010 CGGGGTTGCTCAGAAGTCAT 60.036 55.000 0.00 0.00 0.00 3.06
1726 1751 1.371183 CGGGGTTGCTCAGAAGTCA 59.629 57.895 0.00 0.00 0.00 3.41
1727 1752 0.606604 TACGGGGTTGCTCAGAAGTC 59.393 55.000 0.00 0.00 0.00 3.01
1728 1753 1.276622 ATACGGGGTTGCTCAGAAGT 58.723 50.000 0.00 0.00 0.00 3.01
1729 1754 2.009774 CAATACGGGGTTGCTCAGAAG 58.990 52.381 0.00 0.00 0.00 2.85
1730 1755 1.626321 TCAATACGGGGTTGCTCAGAA 59.374 47.619 0.00 0.00 0.00 3.02
1731 1756 1.271856 TCAATACGGGGTTGCTCAGA 58.728 50.000 0.00 0.00 0.00 3.27
1732 1757 2.332063 ATCAATACGGGGTTGCTCAG 57.668 50.000 0.00 0.00 0.00 3.35
1733 1758 2.026729 TGAATCAATACGGGGTTGCTCA 60.027 45.455 0.00 0.00 0.00 4.26
1734 1759 2.639065 TGAATCAATACGGGGTTGCTC 58.361 47.619 0.00 0.00 0.00 4.26
1735 1760 2.799126 TGAATCAATACGGGGTTGCT 57.201 45.000 0.00 0.00 0.00 3.91
1736 1761 2.034558 CCATGAATCAATACGGGGTTGC 59.965 50.000 0.00 0.00 0.00 4.17
1737 1762 3.287222 ACCATGAATCAATACGGGGTTG 58.713 45.455 0.00 0.00 0.00 3.77
1738 1763 3.662759 ACCATGAATCAATACGGGGTT 57.337 42.857 0.00 0.00 0.00 4.11
1739 1764 3.551846 GAACCATGAATCAATACGGGGT 58.448 45.455 0.00 0.00 0.00 4.95
1740 1765 2.548057 CGAACCATGAATCAATACGGGG 59.452 50.000 0.00 0.00 0.00 5.73
1741 1766 3.462982 TCGAACCATGAATCAATACGGG 58.537 45.455 0.00 0.00 0.00 5.28
1742 1767 5.466728 AGAATCGAACCATGAATCAATACGG 59.533 40.000 0.00 0.00 0.00 4.02
1743 1768 6.530913 AGAATCGAACCATGAATCAATACG 57.469 37.500 0.00 0.00 0.00 3.06
1744 1769 7.134815 CCAAGAATCGAACCATGAATCAATAC 58.865 38.462 0.00 0.00 0.00 1.89
1745 1770 6.262944 CCCAAGAATCGAACCATGAATCAATA 59.737 38.462 0.00 0.00 0.00 1.90
1746 1771 5.068198 CCCAAGAATCGAACCATGAATCAAT 59.932 40.000 0.00 0.00 0.00 2.57
1747 1772 4.398988 CCCAAGAATCGAACCATGAATCAA 59.601 41.667 0.00 0.00 0.00 2.57
1748 1773 3.947196 CCCAAGAATCGAACCATGAATCA 59.053 43.478 0.00 0.00 0.00 2.57
1749 1774 4.199310 TCCCAAGAATCGAACCATGAATC 58.801 43.478 0.00 0.00 0.00 2.52
1750 1775 4.202441 CTCCCAAGAATCGAACCATGAAT 58.798 43.478 0.00 0.00 0.00 2.57
1751 1776 3.009033 ACTCCCAAGAATCGAACCATGAA 59.991 43.478 0.00 0.00 0.00 2.57
1752 1777 2.571653 ACTCCCAAGAATCGAACCATGA 59.428 45.455 0.00 0.00 0.00 3.07
1753 1778 2.991250 ACTCCCAAGAATCGAACCATG 58.009 47.619 0.00 0.00 0.00 3.66
1754 1779 3.347216 CAACTCCCAAGAATCGAACCAT 58.653 45.455 0.00 0.00 0.00 3.55
1755 1780 2.552155 CCAACTCCCAAGAATCGAACCA 60.552 50.000 0.00 0.00 0.00 3.67
1756 1781 2.084546 CCAACTCCCAAGAATCGAACC 58.915 52.381 0.00 0.00 0.00 3.62
1757 1782 2.084546 CCCAACTCCCAAGAATCGAAC 58.915 52.381 0.00 0.00 0.00 3.95
1758 1783 1.982226 TCCCAACTCCCAAGAATCGAA 59.018 47.619 0.00 0.00 0.00 3.71
1759 1784 1.555075 CTCCCAACTCCCAAGAATCGA 59.445 52.381 0.00 0.00 0.00 3.59
1760 1785 1.279271 ACTCCCAACTCCCAAGAATCG 59.721 52.381 0.00 0.00 0.00 3.34
1761 1786 2.619074 CCACTCCCAACTCCCAAGAATC 60.619 54.545 0.00 0.00 0.00 2.52
1762 1787 1.355720 CCACTCCCAACTCCCAAGAAT 59.644 52.381 0.00 0.00 0.00 2.40
1763 1788 0.771127 CCACTCCCAACTCCCAAGAA 59.229 55.000 0.00 0.00 0.00 2.52
1764 1789 0.401395 ACCACTCCCAACTCCCAAGA 60.401 55.000 0.00 0.00 0.00 3.02
1765 1790 0.478507 AACCACTCCCAACTCCCAAG 59.521 55.000 0.00 0.00 0.00 3.61
1766 1791 1.702957 CTAACCACTCCCAACTCCCAA 59.297 52.381 0.00 0.00 0.00 4.12
1767 1792 1.358152 CTAACCACTCCCAACTCCCA 58.642 55.000 0.00 0.00 0.00 4.37
1790 1815 8.981659 TCAACTAGACTAATCCATGATCAGAAA 58.018 33.333 0.09 0.00 0.00 2.52
1793 1818 7.950512 ACTCAACTAGACTAATCCATGATCAG 58.049 38.462 0.09 0.00 0.00 2.90
1795 1820 9.906660 CTAACTCAACTAGACTAATCCATGATC 57.093 37.037 0.00 0.00 0.00 2.92
1809 1842 6.591834 CAGAATGGACCAACTAACTCAACTAG 59.408 42.308 0.00 0.00 0.00 2.57
1821 1858 3.550842 GCAACTCAACAGAATGGACCAAC 60.551 47.826 0.00 0.00 43.62 3.77
1846 1883 3.735820 CGTATGCAGTATGTACACCGGTT 60.736 47.826 2.97 0.00 39.31 4.44
1876 1913 5.728344 GCTTGCGTCTGTACTGTGTTAAAAA 60.728 40.000 0.00 0.00 0.00 1.94
1877 1914 4.260456 GCTTGCGTCTGTACTGTGTTAAAA 60.260 41.667 0.00 0.00 0.00 1.52
1878 1915 3.246699 GCTTGCGTCTGTACTGTGTTAAA 59.753 43.478 0.00 0.00 0.00 1.52
1879 1916 2.798283 GCTTGCGTCTGTACTGTGTTAA 59.202 45.455 0.00 0.00 0.00 2.01
1880 1917 2.400399 GCTTGCGTCTGTACTGTGTTA 58.600 47.619 0.00 0.00 0.00 2.41
1881 1918 1.217882 GCTTGCGTCTGTACTGTGTT 58.782 50.000 0.00 0.00 0.00 3.32
1882 1919 0.939577 CGCTTGCGTCTGTACTGTGT 60.940 55.000 6.86 0.00 0.00 3.72
1883 1920 1.775344 CGCTTGCGTCTGTACTGTG 59.225 57.895 6.86 0.00 0.00 3.66
1884 1921 2.022129 GCGCTTGCGTCTGTACTGT 61.022 57.895 16.38 0.00 0.00 3.55
1885 1922 1.678269 GAGCGCTTGCGTCTGTACTG 61.678 60.000 13.26 0.00 45.69 2.74
1886 1923 1.444553 GAGCGCTTGCGTCTGTACT 60.445 57.895 13.26 3.73 45.69 2.73
1887 1924 1.078759 ATGAGCGCTTGCGTCTGTAC 61.079 55.000 13.26 0.00 45.69 2.90
1888 1925 0.454196 TATGAGCGCTTGCGTCTGTA 59.546 50.000 13.26 6.26 45.69 2.74
1889 1926 0.179100 ATATGAGCGCTTGCGTCTGT 60.179 50.000 13.26 7.66 45.69 3.41
1890 1927 1.453524 GTATATGAGCGCTTGCGTCTG 59.546 52.381 13.26 0.00 45.69 3.51
1891 1928 1.067060 TGTATATGAGCGCTTGCGTCT 59.933 47.619 13.26 13.17 45.69 4.18
1892 1929 1.190323 GTGTATATGAGCGCTTGCGTC 59.810 52.381 13.26 12.36 45.69 5.19
1893 1930 1.209128 GTGTATATGAGCGCTTGCGT 58.791 50.000 13.26 3.24 45.69 5.24
1894 1931 0.159554 CGTGTATATGAGCGCTTGCG 59.840 55.000 13.26 10.90 45.69 4.85
1895 1932 0.111089 GCGTGTATATGAGCGCTTGC 60.111 55.000 13.26 0.00 45.48 4.01
1896 1933 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
1897 1934 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
1898 1935 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
1901 1938 2.324860 TGTATGCGCGTGTATATGAGC 58.675 47.619 13.61 0.41 38.85 4.26
1902 1939 4.621034 TGAATGTATGCGCGTGTATATGAG 59.379 41.667 13.61 0.00 0.00 2.90
1903 1940 4.551388 TGAATGTATGCGCGTGTATATGA 58.449 39.130 13.61 1.21 0.00 2.15
1904 1941 4.901866 TGAATGTATGCGCGTGTATATG 57.098 40.909 13.61 0.00 0.00 1.78
1905 1942 5.410924 AGATGAATGTATGCGCGTGTATAT 58.589 37.500 13.61 2.11 0.00 0.86
1906 1943 4.805219 AGATGAATGTATGCGCGTGTATA 58.195 39.130 13.61 2.40 0.00 1.47
1907 1944 3.653344 AGATGAATGTATGCGCGTGTAT 58.347 40.909 13.61 4.63 0.00 2.29
1908 1945 3.049912 GAGATGAATGTATGCGCGTGTA 58.950 45.455 13.61 0.62 0.00 2.90
1909 1946 1.860950 GAGATGAATGTATGCGCGTGT 59.139 47.619 13.61 0.00 0.00 4.49
1910 1947 2.097056 CAGAGATGAATGTATGCGCGTG 60.097 50.000 13.61 0.00 0.00 5.34
1911 1948 2.130395 CAGAGATGAATGTATGCGCGT 58.870 47.619 8.43 7.55 0.00 6.01
1912 1949 2.097056 CACAGAGATGAATGTATGCGCG 60.097 50.000 0.00 0.00 0.00 6.86
1913 1950 3.126073 TCACAGAGATGAATGTATGCGC 58.874 45.455 0.00 0.00 0.00 6.09
1914 1951 4.317628 CGTTCACAGAGATGAATGTATGCG 60.318 45.833 0.50 0.00 40.60 4.73
1915 1952 4.551603 GCGTTCACAGAGATGAATGTATGC 60.552 45.833 8.94 0.00 44.26 3.14
1916 1953 4.567959 TGCGTTCACAGAGATGAATGTATG 59.432 41.667 8.94 0.00 44.26 2.39
1917 1954 4.568359 GTGCGTTCACAGAGATGAATGTAT 59.432 41.667 8.94 0.00 44.26 2.29
1918 1955 3.926527 GTGCGTTCACAGAGATGAATGTA 59.073 43.478 8.94 2.73 44.26 2.29
1919 1956 2.738846 GTGCGTTCACAGAGATGAATGT 59.261 45.455 8.94 0.00 44.26 2.71
1920 1957 3.380486 GTGCGTTCACAGAGATGAATG 57.620 47.619 3.80 3.80 44.91 2.67
1931 1968 2.350760 GTGCGTGTGTGCGTTCAC 60.351 61.111 5.43 5.43 43.40 3.18
1932 1969 1.710103 AATGTGCGTGTGTGCGTTCA 61.710 50.000 0.00 0.00 37.81 3.18
1933 1970 0.991770 GAATGTGCGTGTGTGCGTTC 60.992 55.000 0.00 0.00 37.81 3.95
1934 1971 1.010125 GAATGTGCGTGTGTGCGTT 60.010 52.632 0.00 0.00 37.81 4.84
1935 1972 0.598942 TAGAATGTGCGTGTGTGCGT 60.599 50.000 0.00 0.00 37.81 5.24
1936 1973 0.179250 GTAGAATGTGCGTGTGTGCG 60.179 55.000 0.00 0.00 37.81 5.34
1937 1974 1.148310 AGTAGAATGTGCGTGTGTGC 58.852 50.000 0.00 0.00 0.00 4.57
1938 1975 2.799978 TGAAGTAGAATGTGCGTGTGTG 59.200 45.455 0.00 0.00 0.00 3.82
1939 1976 2.800544 GTGAAGTAGAATGTGCGTGTGT 59.199 45.455 0.00 0.00 0.00 3.72
1940 1977 2.157668 GGTGAAGTAGAATGTGCGTGTG 59.842 50.000 0.00 0.00 0.00 3.82
1941 1978 2.224185 TGGTGAAGTAGAATGTGCGTGT 60.224 45.455 0.00 0.00 0.00 4.49
1942 1979 2.412870 TGGTGAAGTAGAATGTGCGTG 58.587 47.619 0.00 0.00 0.00 5.34
1943 1980 2.612972 CCTGGTGAAGTAGAATGTGCGT 60.613 50.000 0.00 0.00 0.00 5.24
1944 1981 2.002586 CCTGGTGAAGTAGAATGTGCG 58.997 52.381 0.00 0.00 0.00 5.34
1945 1982 2.359900 CCCTGGTGAAGTAGAATGTGC 58.640 52.381 0.00 0.00 0.00 4.57
1946 1983 2.026822 AGCCCTGGTGAAGTAGAATGTG 60.027 50.000 0.00 0.00 0.00 3.21
1947 1984 2.269940 AGCCCTGGTGAAGTAGAATGT 58.730 47.619 0.00 0.00 0.00 2.71
1948 1985 3.012518 CAAGCCCTGGTGAAGTAGAATG 58.987 50.000 0.00 0.00 0.00 2.67
1949 1986 2.912956 TCAAGCCCTGGTGAAGTAGAAT 59.087 45.455 0.00 0.00 0.00 2.40
1950 1987 2.334977 TCAAGCCCTGGTGAAGTAGAA 58.665 47.619 0.00 0.00 0.00 2.10
1951 1988 2.024176 TCAAGCCCTGGTGAAGTAGA 57.976 50.000 0.00 0.00 0.00 2.59
1952 1989 2.039084 AGTTCAAGCCCTGGTGAAGTAG 59.961 50.000 4.54 0.00 36.00 2.57
1953 1990 2.038557 GAGTTCAAGCCCTGGTGAAGTA 59.961 50.000 6.00 0.00 37.50 2.24
1954 1991 0.846693 AGTTCAAGCCCTGGTGAAGT 59.153 50.000 0.00 0.16 34.52 3.01
1955 1992 1.072965 AGAGTTCAAGCCCTGGTGAAG 59.927 52.381 0.00 0.00 34.52 3.02
1956 1993 1.140312 AGAGTTCAAGCCCTGGTGAA 58.860 50.000 0.00 0.00 0.00 3.18
1957 1994 0.397941 CAGAGTTCAAGCCCTGGTGA 59.602 55.000 0.00 0.00 0.00 4.02
1958 1995 0.607489 CCAGAGTTCAAGCCCTGGTG 60.607 60.000 0.00 0.00 40.84 4.17
1959 1996 1.763770 CCAGAGTTCAAGCCCTGGT 59.236 57.895 0.00 0.00 40.84 4.00
1960 1997 4.730487 CCAGAGTTCAAGCCCTGG 57.270 61.111 0.00 0.00 40.01 4.45
1961 1998 0.607489 CCACCAGAGTTCAAGCCCTG 60.607 60.000 0.00 0.00 0.00 4.45
1962 1999 1.763770 CCACCAGAGTTCAAGCCCT 59.236 57.895 0.00 0.00 0.00 5.19
1963 2000 1.303643 CCCACCAGAGTTCAAGCCC 60.304 63.158 0.00 0.00 0.00 5.19
1964 2001 1.973812 GCCCACCAGAGTTCAAGCC 60.974 63.158 0.00 0.00 0.00 4.35
1965 2002 1.073897 AGCCCACCAGAGTTCAAGC 59.926 57.895 0.00 0.00 0.00 4.01
1966 2003 0.607489 CCAGCCCACCAGAGTTCAAG 60.607 60.000 0.00 0.00 0.00 3.02
1967 2004 1.059584 TCCAGCCCACCAGAGTTCAA 61.060 55.000 0.00 0.00 0.00 2.69
1968 2005 1.461268 TCCAGCCCACCAGAGTTCA 60.461 57.895 0.00 0.00 0.00 3.18
1969 2006 1.194781 TCTCCAGCCCACCAGAGTTC 61.195 60.000 0.00 0.00 0.00 3.01
1970 2007 0.548682 ATCTCCAGCCCACCAGAGTT 60.549 55.000 0.00 0.00 0.00 3.01
1971 2008 0.339859 TATCTCCAGCCCACCAGAGT 59.660 55.000 0.00 0.00 0.00 3.24
1972 2009 0.755686 GTATCTCCAGCCCACCAGAG 59.244 60.000 0.00 0.00 0.00 3.35
1973 2010 0.691078 GGTATCTCCAGCCCACCAGA 60.691 60.000 0.00 0.00 35.97 3.86
1974 2011 0.982852 TGGTATCTCCAGCCCACCAG 60.983 60.000 0.00 0.00 41.93 4.00
1975 2012 1.082019 TGGTATCTCCAGCCCACCA 59.918 57.895 0.00 0.00 41.93 4.17
1976 2013 4.066614 TGGTATCTCCAGCCCACC 57.933 61.111 0.00 0.00 41.93 4.61
1980 2017 4.383897 GAGGGACTATGGTATCTCCAGCC 61.384 56.522 1.41 0.00 46.01 4.85
1981 2018 2.829120 GAGGGACTATGGTATCTCCAGC 59.171 54.545 1.41 0.00 46.01 4.85
1982 2019 4.396357 AGAGGGACTATGGTATCTCCAG 57.604 50.000 7.39 0.00 46.01 3.86
1983 2020 5.459241 GGTTAGAGGGACTATGGTATCTCCA 60.459 48.000 7.39 0.00 46.68 3.86
1984 2021 5.018149 GGTTAGAGGGACTATGGTATCTCC 58.982 50.000 7.39 0.00 41.55 3.71
1985 2022 5.642165 TGGTTAGAGGGACTATGGTATCTC 58.358 45.833 3.95 3.95 41.55 2.75
1986 2023 5.681494 TGGTTAGAGGGACTATGGTATCT 57.319 43.478 0.00 0.00 41.55 1.98
1987 2024 5.422650 GGATGGTTAGAGGGACTATGGTATC 59.577 48.000 0.00 0.00 41.55 2.24
1988 2025 5.162760 TGGATGGTTAGAGGGACTATGGTAT 60.163 44.000 0.00 0.00 41.55 2.73
1989 2026 4.171243 TGGATGGTTAGAGGGACTATGGTA 59.829 45.833 0.00 0.00 41.55 3.25
1990 2027 3.051341 TGGATGGTTAGAGGGACTATGGT 60.051 47.826 0.00 0.00 41.55 3.55
1991 2028 3.587498 TGGATGGTTAGAGGGACTATGG 58.413 50.000 0.00 0.00 41.55 2.74
1992 2029 4.202367 GGTTGGATGGTTAGAGGGACTATG 60.202 50.000 0.00 0.00 41.55 2.23
1993 2030 3.974642 GGTTGGATGGTTAGAGGGACTAT 59.025 47.826 0.00 0.00 41.55 2.12
1994 2031 3.246203 TGGTTGGATGGTTAGAGGGACTA 60.246 47.826 0.00 0.00 41.55 2.59
1996 2033 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
1997 2034 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
1998 2035 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
1999 2036 2.356125 CCTGTGGTTGGATGGTTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
2000 2037 2.305927 ACCTGTGGTTGGATGGTTAGAG 59.694 50.000 0.00 0.00 27.29 2.43
2001 2038 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
2002 2039 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
2015 2052 1.148310 CAGTAGCGAACCAACCTGTG 58.852 55.000 0.00 0.00 0.00 3.66
2016 2053 0.602905 GCAGTAGCGAACCAACCTGT 60.603 55.000 0.00 0.00 0.00 4.00
2017 2054 0.602638 TGCAGTAGCGAACCAACCTG 60.603 55.000 0.00 0.00 46.23 4.00
2018 2055 0.324943 ATGCAGTAGCGAACCAACCT 59.675 50.000 0.00 0.00 46.23 3.50
2019 2056 1.664151 GTATGCAGTAGCGAACCAACC 59.336 52.381 0.00 0.00 46.23 3.77
2020 2057 2.343101 TGTATGCAGTAGCGAACCAAC 58.657 47.619 0.00 0.00 46.23 3.77
2021 2058 2.753055 TGTATGCAGTAGCGAACCAA 57.247 45.000 0.00 0.00 46.23 3.67
2022 2059 2.232696 TCTTGTATGCAGTAGCGAACCA 59.767 45.455 0.00 0.00 46.23 3.67
2023 2060 2.860735 CTCTTGTATGCAGTAGCGAACC 59.139 50.000 0.00 0.00 46.23 3.62
2024 2061 3.512680 ACTCTTGTATGCAGTAGCGAAC 58.487 45.455 0.00 0.00 46.23 3.95
2025 2062 3.868757 ACTCTTGTATGCAGTAGCGAA 57.131 42.857 0.00 0.00 46.23 4.70
2026 2063 3.868757 AACTCTTGTATGCAGTAGCGA 57.131 42.857 0.00 0.00 46.23 4.93
2027 2064 6.863645 ACATATAACTCTTGTATGCAGTAGCG 59.136 38.462 0.00 0.00 46.23 4.26
2028 2065 9.130312 GTACATATAACTCTTGTATGCAGTAGC 57.870 37.037 0.00 0.00 38.02 3.58
2031 2068 9.314321 GTTGTACATATAACTCTTGTATGCAGT 57.686 33.333 0.00 0.00 38.02 4.40
2032 2069 9.313118 TGTTGTACATATAACTCTTGTATGCAG 57.687 33.333 0.00 0.00 38.02 4.41
2033 2070 9.830975 ATGTTGTACATATAACTCTTGTATGCA 57.169 29.630 0.00 0.00 36.99 3.96
2037 2074 9.884636 AAGCATGTTGTACATATAACTCTTGTA 57.115 29.630 0.00 0.00 36.53 2.41
2038 2075 8.668353 CAAGCATGTTGTACATATAACTCTTGT 58.332 33.333 0.00 0.00 36.53 3.16
2039 2076 8.882736 TCAAGCATGTTGTACATATAACTCTTG 58.117 33.333 0.00 7.58 36.53 3.02
2040 2077 8.883731 GTCAAGCATGTTGTACATATAACTCTT 58.116 33.333 0.00 0.00 36.53 2.85
2041 2078 8.260818 AGTCAAGCATGTTGTACATATAACTCT 58.739 33.333 0.00 0.00 36.53 3.24
2042 2079 8.425577 AGTCAAGCATGTTGTACATATAACTC 57.574 34.615 0.00 0.00 36.53 3.01
2043 2080 8.260818 AGAGTCAAGCATGTTGTACATATAACT 58.739 33.333 0.00 0.00 36.53 2.24
2044 2081 8.425577 AGAGTCAAGCATGTTGTACATATAAC 57.574 34.615 0.00 0.00 36.53 1.89
2056 2093 2.998670 CACATCGAAGAGTCAAGCATGT 59.001 45.455 0.00 0.00 43.63 3.21
2066 2103 6.237490 GGATTTTACACGTACACATCGAAGAG 60.237 42.308 0.00 0.00 43.63 2.85
2111 2148 7.334921 CGTATATGAGTTTTCACACCCCTAAAA 59.665 37.037 0.00 0.00 35.83 1.52
2112 2149 6.819649 CGTATATGAGTTTTCACACCCCTAAA 59.180 38.462 0.00 0.00 35.83 1.85
2113 2150 6.342906 CGTATATGAGTTTTCACACCCCTAA 58.657 40.000 0.00 0.00 35.83 2.69
2114 2151 5.682990 GCGTATATGAGTTTTCACACCCCTA 60.683 44.000 0.00 0.00 35.83 3.53
2115 2152 4.766375 CGTATATGAGTTTTCACACCCCT 58.234 43.478 0.00 0.00 35.83 4.79
2116 2153 3.311596 GCGTATATGAGTTTTCACACCCC 59.688 47.826 0.00 0.00 35.83 4.95
2117 2154 3.936453 TGCGTATATGAGTTTTCACACCC 59.064 43.478 0.00 0.00 35.83 4.61
2118 2155 4.868171 TCTGCGTATATGAGTTTTCACACC 59.132 41.667 0.00 0.00 35.83 4.16
2119 2156 6.414079 CATCTGCGTATATGAGTTTTCACAC 58.586 40.000 0.00 0.00 35.83 3.82
2120 2157 5.006649 GCATCTGCGTATATGAGTTTTCACA 59.993 40.000 3.06 0.00 35.83 3.58
2121 2158 5.435557 GCATCTGCGTATATGAGTTTTCAC 58.564 41.667 3.06 0.00 35.83 3.18
2122 2159 5.657470 GCATCTGCGTATATGAGTTTTCA 57.343 39.130 3.06 0.00 37.81 2.69
2137 2174 2.743538 TGCGGTGTCAGCATCTGC 60.744 61.111 2.47 0.00 40.01 4.26
2143 2180 1.128692 GTACTTTCATGCGGTGTCAGC 59.871 52.381 0.00 0.00 0.00 4.26
2151 2188 5.799936 CCCAAAATTGTAGTACTTTCATGCG 59.200 40.000 0.00 0.00 0.00 4.73
2175 2215 7.382110 TCAGATATCTAAACAGAATGCTAGGC 58.618 38.462 4.54 0.00 42.53 3.93
2226 2266 7.470900 CAAAAATCTTTTAACCTTGCAGCAAA 58.529 30.769 9.65 0.00 0.00 3.68
2228 2268 5.007528 GCAAAAATCTTTTAACCTTGCAGCA 59.992 36.000 0.00 0.00 32.23 4.41
2232 2272 5.991606 AGAGGCAAAAATCTTTTAACCTTGC 59.008 36.000 9.33 5.84 36.37 4.01
2243 2283 4.916183 AGCTGAACTAGAGGCAAAAATCT 58.084 39.130 0.00 0.00 0.00 2.40
2247 2287 4.460263 TCAAAGCTGAACTAGAGGCAAAA 58.540 39.130 0.00 0.00 0.00 2.44
2252 2292 3.376546 GGCAATCAAAGCTGAACTAGAGG 59.623 47.826 0.00 0.00 34.49 3.69
2253 2293 3.376546 GGGCAATCAAAGCTGAACTAGAG 59.623 47.826 0.00 0.00 34.49 2.43
2254 2294 3.347216 GGGCAATCAAAGCTGAACTAGA 58.653 45.455 0.00 0.00 34.49 2.43
2255 2295 2.096496 CGGGCAATCAAAGCTGAACTAG 59.904 50.000 0.00 0.00 34.49 2.57
2268 2309 0.811281 CCTCAAAGGTTCGGGCAATC 59.189 55.000 0.00 0.00 0.00 2.67
2325 3150 7.459795 TTTTTGCACATACCACATCTATTCA 57.540 32.000 0.00 0.00 0.00 2.57
2353 3178 9.874205 CAAACACCATATACCAAATTTGAATCT 57.126 29.630 19.86 3.15 0.00 2.40
2357 3182 9.650539 CATTCAAACACCATATACCAAATTTGA 57.349 29.630 19.86 0.52 34.07 2.69
2367 3192 9.368674 CAAATTCAAGCATTCAAACACCATATA 57.631 29.630 0.00 0.00 0.00 0.86
2368 3193 8.095792 TCAAATTCAAGCATTCAAACACCATAT 58.904 29.630 0.00 0.00 0.00 1.78
2448 3273 7.865385 GTCAAGTTTTAGCACCACAATAATTCA 59.135 33.333 0.00 0.00 0.00 2.57
2480 3305 5.060662 ACGCACACAGCCATATACTATAG 57.939 43.478 0.00 0.00 41.38 1.31
2501 3326 1.451028 GGCCTCTGCATCAGGTGAC 60.451 63.158 12.36 2.01 40.13 3.67
2565 3766 6.512177 TGTTGTTGTTGTTGTTGTTGTTAC 57.488 33.333 0.00 0.00 0.00 2.50
2567 3768 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2569 3770 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2574 3775 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2577 3778 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2578 3779 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2579 3780 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2581 3782 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2583 3784 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2586 3787 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2624 5447 6.774656 AGAAGCAATAATCCCTTCATTAGTGG 59.225 38.462 0.00 0.00 35.69 4.00
2625 5448 7.646314 CAGAAGCAATAATCCCTTCATTAGTG 58.354 38.462 0.00 0.00 37.37 2.74
2628 5451 5.536161 GGCAGAAGCAATAATCCCTTCATTA 59.464 40.000 0.00 0.00 44.61 1.90
2629 5452 4.343239 GGCAGAAGCAATAATCCCTTCATT 59.657 41.667 0.00 0.00 44.61 2.57
2630 5453 3.893813 GGCAGAAGCAATAATCCCTTCAT 59.106 43.478 0.00 0.00 44.61 2.57
2634 5457 2.371658 GGGCAGAAGCAATAATCCCT 57.628 50.000 0.00 0.00 44.61 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.