Multiple sequence alignment - TraesCS5D01G277400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G277400 chr5D 100.000 4986 0 0 1 4986 379388311 379383326 0.000000e+00 9208.0
1 TraesCS5D01G277400 chr5D 87.759 531 41 17 1 514 9104979 9105502 2.570000e-167 599.0
2 TraesCS5D01G277400 chr5D 96.154 130 4 1 992 1121 379133842 379133714 1.410000e-50 211.0
3 TraesCS5D01G277400 chr5D 95.349 129 6 0 996 1124 379220095 379219967 6.540000e-49 206.0
4 TraesCS5D01G277400 chr5D 93.548 124 7 1 1007 1130 379229728 379229606 3.070000e-42 183.0
5 TraesCS5D01G277400 chr5D 91.791 134 7 2 991 1124 379251408 379251279 3.070000e-42 183.0
6 TraesCS5D01G277400 chr5D 94.444 108 6 0 1015 1122 379257412 379257305 3.090000e-37 167.0
7 TraesCS5D01G277400 chr5D 91.071 112 10 0 1007 1118 379344109 379343998 8.650000e-33 152.0
8 TraesCS5D01G277400 chr5B 91.759 1626 74 17 2471 4085 455293336 455291760 0.000000e+00 2206.0
9 TraesCS5D01G277400 chr5B 91.173 827 56 8 1259 2075 455294570 455293751 0.000000e+00 1107.0
10 TraesCS5D01G277400 chr5B 86.355 535 40 18 613 1124 455295148 455294624 2.030000e-153 553.0
11 TraesCS5D01G277400 chr5B 91.289 287 24 1 2087 2372 455293689 455293403 1.680000e-104 390.0
12 TraesCS5D01G277400 chr5B 85.315 286 26 11 4569 4839 455283052 455282768 1.060000e-71 281.0
13 TraesCS5D01G277400 chr5B 95.489 133 4 2 991 1121 454695549 454695417 1.410000e-50 211.0
14 TraesCS5D01G277400 chr5B 93.939 132 7 1 993 1124 454897232 454897102 1.090000e-46 198.0
15 TraesCS5D01G277400 chr5B 89.241 158 8 7 976 1133 455147813 455147665 6.590000e-44 189.0
16 TraesCS5D01G277400 chr5B 94.366 71 4 0 4255 4325 455291081 455291011 5.280000e-20 110.0
17 TraesCS5D01G277400 chr5B 94.118 68 4 0 545 612 455295255 455295188 2.460000e-18 104.0
18 TraesCS5D01G277400 chr5A 90.317 1642 100 28 2471 4086 480088843 480087235 0.000000e+00 2097.0
19 TraesCS5D01G277400 chr5A 87.156 1308 75 35 545 1831 480090462 480089227 0.000000e+00 1399.0
20 TraesCS5D01G277400 chr5A 92.683 287 20 1 2087 2372 480089192 480088906 3.590000e-111 412.0
21 TraesCS5D01G277400 chr5A 81.892 370 54 7 4477 4839 480085518 480085155 2.920000e-77 300.0
22 TraesCS5D01G277400 chr5A 96.124 129 5 0 996 1124 479397649 479397521 1.410000e-50 211.0
23 TraesCS5D01G277400 chr5A 95.385 130 5 1 992 1121 479239836 479239708 6.540000e-49 206.0
24 TraesCS5D01G277400 chr5A 98.039 51 1 0 4425 4475 480085635 480085585 6.870000e-14 89.8
25 TraesCS5D01G277400 chr6D 89.038 520 42 8 1 514 40537942 40538452 9.110000e-177 630.0
26 TraesCS5D01G277400 chr6D 92.857 126 6 3 4862 4986 79162190 79162067 3.970000e-41 180.0
27 TraesCS5D01G277400 chr6D 85.827 127 15 3 4861 4986 32381215 32381091 1.130000e-26 132.0
28 TraesCS5D01G277400 chr6D 82.222 135 19 5 4854 4986 387804477 387804346 1.470000e-20 111.0
29 TraesCS5D01G277400 chr3D 88.658 529 39 10 1 514 608802108 608801586 4.240000e-175 625.0
30 TraesCS5D01G277400 chr3D 87.619 525 46 13 1 514 591714639 591714123 4.300000e-165 592.0
31 TraesCS5D01G277400 chr3D 92.800 125 5 3 4862 4986 474110368 474110488 1.430000e-40 178.0
32 TraesCS5D01G277400 chr1D 88.738 515 50 7 3 514 18984242 18984751 1.520000e-174 623.0
33 TraesCS5D01G277400 chr1D 92.913 127 9 0 4860 4986 477269252 477269126 8.520000e-43 185.0
34 TraesCS5D01G277400 chr1D 88.281 128 13 2 4860 4986 439418454 439418580 8.650000e-33 152.0
35 TraesCS5D01G277400 chr2B 88.123 522 46 8 1 514 95340384 95340897 1.540000e-169 606.0
36 TraesCS5D01G277400 chr2A 87.524 529 49 15 1 514 720447804 720447278 3.320000e-166 595.0
37 TraesCS5D01G277400 chr4A 87.739 522 47 13 3 514 487546829 487547343 1.200000e-165 593.0
38 TraesCS5D01G277400 chr4D 87.716 521 43 10 2 510 282786982 282787493 5.560000e-164 588.0
39 TraesCS5D01G277400 chr4D 93.651 126 6 2 4862 4986 8189128 8189004 2.370000e-43 187.0
40 TraesCS5D01G277400 chr1A 91.608 143 6 4 991 1133 586720519 586720383 5.090000e-45 193.0
41 TraesCS5D01G277400 chr1A 98.438 64 1 0 1015 1078 586725843 586725780 4.080000e-21 113.0
42 TraesCS5D01G277400 chr2D 93.651 126 6 2 4862 4986 641220090 641220214 2.370000e-43 187.0
43 TraesCS5D01G277400 chr6A 93.600 125 7 1 4862 4986 13230408 13230285 8.520000e-43 185.0
44 TraesCS5D01G277400 chr6A 90.370 135 11 2 4854 4986 136681241 136681375 5.130000e-40 176.0
45 TraesCS5D01G277400 chr6A 89.630 135 12 2 4854 4986 136724185 136724319 2.390000e-38 171.0
46 TraesCS5D01G277400 chr7A 89.726 146 11 4 4842 4986 643982180 643982322 3.070000e-42 183.0
47 TraesCS5D01G277400 chrUn 91.045 134 9 2 4855 4986 301081658 301081526 1.430000e-40 178.0
48 TraesCS5D01G277400 chrUn 90.299 134 10 2 4855 4986 328473965 328474097 6.640000e-39 172.0
49 TraesCS5D01G277400 chrUn 90.299 134 10 2 4855 4986 350961261 350961129 6.640000e-39 172.0
50 TraesCS5D01G277400 chrUn 91.525 59 5 0 4928 4986 354524732 354524790 1.150000e-11 82.4
51 TraesCS5D01G277400 chr7B 83.333 102 8 2 1021 1113 535241523 535241624 8.890000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G277400 chr5D 379383326 379388311 4985 True 9208.00 9208 100.0000 1 4986 1 chr5D.!!$R7 4985
1 TraesCS5D01G277400 chr5D 9104979 9105502 523 False 599.00 599 87.7590 1 514 1 chr5D.!!$F1 513
2 TraesCS5D01G277400 chr5B 455291011 455295255 4244 True 745.00 2206 91.5100 545 4325 6 chr5B.!!$R5 3780
3 TraesCS5D01G277400 chr5A 480085155 480090462 5307 True 859.56 2097 90.0174 545 4839 5 chr5A.!!$R3 4294
4 TraesCS5D01G277400 chr6D 40537942 40538452 510 False 630.00 630 89.0380 1 514 1 chr6D.!!$F1 513
5 TraesCS5D01G277400 chr3D 608801586 608802108 522 True 625.00 625 88.6580 1 514 1 chr3D.!!$R2 513
6 TraesCS5D01G277400 chr3D 591714123 591714639 516 True 592.00 592 87.6190 1 514 1 chr3D.!!$R1 513
7 TraesCS5D01G277400 chr1D 18984242 18984751 509 False 623.00 623 88.7380 3 514 1 chr1D.!!$F1 511
8 TraesCS5D01G277400 chr2B 95340384 95340897 513 False 606.00 606 88.1230 1 514 1 chr2B.!!$F1 513
9 TraesCS5D01G277400 chr2A 720447278 720447804 526 True 595.00 595 87.5240 1 514 1 chr2A.!!$R1 513
10 TraesCS5D01G277400 chr4A 487546829 487547343 514 False 593.00 593 87.7390 3 514 1 chr4A.!!$F1 511
11 TraesCS5D01G277400 chr4D 282786982 282787493 511 False 588.00 588 87.7160 2 510 1 chr4D.!!$F1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 221 0.170561 GCCGTGACTCTCGCTAAAGA 59.829 55.0 0.00 0.00 0.00 2.52 F
1126 1250 0.248215 CGACCCATGTACGTACGGAC 60.248 60.0 23.91 23.91 0.00 4.79 F
1850 2026 0.179282 GCACGTGTCGCTCTTTAACG 60.179 55.0 18.38 0.00 40.00 3.18 F
2362 2590 0.041400 TGCACGCGTCACAATTCTTG 60.041 50.0 9.86 0.00 0.00 3.02 F
3734 4023 0.028505 CTTGTCACACTGCACTGCAC 59.971 55.0 0.00 0.00 33.79 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1183 1307 0.317160 ACGGAACTGAATCGACTGCA 59.683 50.0 0.00 0.0 0.00 4.41 R
2362 2590 0.035056 ATTGTACTCCTGTGCCTGCC 60.035 55.0 0.00 0.0 0.00 4.85 R
3702 3991 0.318699 TGACAAGTTCTGACCGAGCG 60.319 55.0 0.00 0.0 0.00 5.03 R
3738 4027 0.469917 GGCTTACTGGCTGCAGGATA 59.530 55.0 17.12 0.0 38.32 2.59 R
4925 7099 0.324943 TGTGGCTTACTTCTCTGCCC 59.675 55.0 0.00 0.0 44.32 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 145 2.622064 AGCAAAACCTTGACTCTCGT 57.378 45.000 0.00 0.00 34.14 4.18
211 221 0.170561 GCCGTGACTCTCGCTAAAGA 59.829 55.000 0.00 0.00 0.00 2.52
248 258 2.981875 CGGAAGAAAAACCGTGACTTG 58.018 47.619 0.00 0.00 43.53 3.16
355 384 4.201608 GGGAAAACCAAAACGTCGAAAAAC 60.202 41.667 0.00 0.00 39.85 2.43
405 442 3.310246 ACGCGTGCGGAAAAATAAAAAT 58.690 36.364 12.93 0.00 44.69 1.82
407 449 4.916249 ACGCGTGCGGAAAAATAAAAATAA 59.084 33.333 12.93 0.00 44.69 1.40
410 452 6.950979 CGCGTGCGGAAAAATAAAAATAAAAT 59.049 30.769 6.30 0.00 35.56 1.82
432 474 1.668101 AATCCGGAGAGAGCGTCCAC 61.668 60.000 11.34 0.00 33.14 4.02
514 556 1.367840 AAGGAGCGCTCGTTCACTT 59.632 52.632 33.24 24.89 32.93 3.16
515 557 0.249911 AAGGAGCGCTCGTTCACTTT 60.250 50.000 33.24 15.54 32.93 2.66
516 558 0.249911 AGGAGCGCTCGTTCACTTTT 60.250 50.000 29.81 4.97 0.00 2.27
517 559 0.586802 GGAGCGCTCGTTCACTTTTT 59.413 50.000 29.81 0.00 0.00 1.94
533 575 4.492604 TTTTTGAGGGGTGGAGCG 57.507 55.556 0.00 0.00 0.00 5.03
534 576 1.901464 TTTTTGAGGGGTGGAGCGC 60.901 57.895 0.00 0.00 0.00 5.92
535 577 2.351924 TTTTTGAGGGGTGGAGCGCT 62.352 55.000 11.27 11.27 0.00 5.92
536 578 2.351924 TTTTGAGGGGTGGAGCGCTT 62.352 55.000 13.26 0.00 0.00 4.68
537 579 2.351924 TTTGAGGGGTGGAGCGCTTT 62.352 55.000 13.26 0.00 0.00 3.51
538 580 2.747855 GAGGGGTGGAGCGCTTTG 60.748 66.667 13.26 0.00 0.00 2.77
645 726 2.281484 GACCAGCGGTTGCCTCAA 60.281 61.111 1.80 0.00 44.31 3.02
646 727 1.896660 GACCAGCGGTTGCCTCAAA 60.897 57.895 1.80 0.00 44.31 2.69
647 728 2.130073 GACCAGCGGTTGCCTCAAAC 62.130 60.000 1.80 0.00 44.31 2.93
648 729 2.192861 CCAGCGGTTGCCTCAAACA 61.193 57.895 0.00 0.00 44.31 2.83
786 871 4.778143 GGAACAGGTGGCCGCGAT 62.778 66.667 8.23 0.00 0.00 4.58
809 894 4.056125 TGTCTGCTCCACCGCTCG 62.056 66.667 0.00 0.00 0.00 5.03
829 914 1.858399 GCTCCACGTGTTTTTGTTCCG 60.858 52.381 15.65 0.00 0.00 4.30
904 989 7.072030 GGATTTCTTAATCGATTTCCACATCG 58.928 38.462 17.19 0.00 46.24 3.84
927 1012 0.965866 TGCTAGTGCTACGACCTGCT 60.966 55.000 0.00 0.00 40.48 4.24
942 1027 1.354040 CTGCTACTTCCAGTTCTGCG 58.646 55.000 0.00 0.00 0.00 5.18
943 1028 0.679505 TGCTACTTCCAGTTCTGCGT 59.320 50.000 0.00 0.00 0.00 5.24
944 1029 1.890489 TGCTACTTCCAGTTCTGCGTA 59.110 47.619 0.00 0.00 0.00 4.42
945 1030 2.260481 GCTACTTCCAGTTCTGCGTAC 58.740 52.381 0.00 0.00 0.00 3.67
946 1031 2.094649 GCTACTTCCAGTTCTGCGTACT 60.095 50.000 0.00 0.00 0.00 2.73
947 1032 3.614390 GCTACTTCCAGTTCTGCGTACTT 60.614 47.826 0.00 0.00 0.00 2.24
989 1113 2.273776 GGCAGGAGGAAGAAGGGC 59.726 66.667 0.00 0.00 0.00 5.19
990 1114 2.606587 GGCAGGAGGAAGAAGGGCA 61.607 63.158 0.00 0.00 0.00 5.36
991 1115 1.077858 GCAGGAGGAAGAAGGGCAG 60.078 63.158 0.00 0.00 0.00 4.85
992 1116 1.606531 CAGGAGGAAGAAGGGCAGG 59.393 63.158 0.00 0.00 0.00 4.85
993 1117 0.911525 CAGGAGGAAGAAGGGCAGGA 60.912 60.000 0.00 0.00 0.00 3.86
994 1118 0.620121 AGGAGGAAGAAGGGCAGGAG 60.620 60.000 0.00 0.00 0.00 3.69
995 1119 1.631071 GGAGGAAGAAGGGCAGGAGG 61.631 65.000 0.00 0.00 0.00 4.30
996 1120 1.617839 AGGAAGAAGGGCAGGAGGG 60.618 63.158 0.00 0.00 0.00 4.30
1080 1204 3.080121 AAGCTGCTCCTCTCCCGG 61.080 66.667 1.00 0.00 0.00 5.73
1120 1244 3.060020 CTCCGCGACCCATGTACGT 62.060 63.158 8.23 0.00 0.00 3.57
1123 1247 1.935917 CGCGACCCATGTACGTACG 60.936 63.158 20.18 15.01 0.00 3.67
1124 1248 1.587088 GCGACCCATGTACGTACGG 60.587 63.158 21.06 17.03 0.00 4.02
1125 1249 1.992233 GCGACCCATGTACGTACGGA 61.992 60.000 21.06 8.59 0.00 4.69
1126 1250 0.248215 CGACCCATGTACGTACGGAC 60.248 60.000 23.91 23.91 0.00 4.79
1156 1280 2.805353 CGACCTGTTCGCCTCACG 60.805 66.667 0.00 0.00 41.87 4.35
1157 1281 3.112709 GACCTGTTCGCCTCACGC 61.113 66.667 0.00 0.00 43.23 5.34
1158 1282 4.681978 ACCTGTTCGCCTCACGCC 62.682 66.667 0.00 0.00 43.23 5.68
1227 1393 7.590322 GTGTCATAGATGTGATTTGCATTCATC 59.410 37.037 3.47 6.19 36.25 2.92
1232 1398 7.215719 AGATGTGATTTGCATTCATCCATAG 57.784 36.000 3.47 0.00 36.54 2.23
1233 1399 6.776116 AGATGTGATTTGCATTCATCCATAGT 59.224 34.615 3.47 0.00 36.54 2.12
1234 1400 6.778834 TGTGATTTGCATTCATCCATAGTT 57.221 33.333 3.47 0.00 0.00 2.24
1235 1401 6.566141 TGTGATTTGCATTCATCCATAGTTG 58.434 36.000 3.47 0.00 0.00 3.16
1236 1402 6.153170 TGTGATTTGCATTCATCCATAGTTGT 59.847 34.615 3.47 0.00 0.00 3.32
1237 1403 7.338957 TGTGATTTGCATTCATCCATAGTTGTA 59.661 33.333 3.47 0.00 0.00 2.41
1238 1404 8.190122 GTGATTTGCATTCATCCATAGTTGTAA 58.810 33.333 3.47 0.00 0.00 2.41
1239 1405 8.747471 TGATTTGCATTCATCCATAGTTGTAAA 58.253 29.630 0.00 0.00 0.00 2.01
1240 1406 9.754382 GATTTGCATTCATCCATAGTTGTAAAT 57.246 29.630 0.00 0.00 33.89 1.40
1241 1407 9.754382 ATTTGCATTCATCCATAGTTGTAAATC 57.246 29.630 0.00 0.00 27.85 2.17
1242 1408 7.878547 TGCATTCATCCATAGTTGTAAATCA 57.121 32.000 0.00 0.00 0.00 2.57
1243 1409 8.291191 TGCATTCATCCATAGTTGTAAATCAA 57.709 30.769 0.00 0.00 0.00 2.57
1244 1410 8.916062 TGCATTCATCCATAGTTGTAAATCAAT 58.084 29.630 0.00 0.00 38.38 2.57
1245 1411 9.403110 GCATTCATCCATAGTTGTAAATCAATC 57.597 33.333 0.00 0.00 38.38 2.67
1248 1414 9.904198 TTCATCCATAGTTGTAAATCAATCAGA 57.096 29.630 0.00 0.00 38.38 3.27
1249 1415 9.551734 TCATCCATAGTTGTAAATCAATCAGAG 57.448 33.333 0.00 0.00 38.38 3.35
1250 1416 9.334947 CATCCATAGTTGTAAATCAATCAGAGT 57.665 33.333 0.00 0.00 38.38 3.24
1253 1419 9.166173 CCATAGTTGTAAATCAATCAGAGTTCA 57.834 33.333 0.00 0.00 38.38 3.18
1293 1459 1.751924 AGTTCCGTGTCTAGATGAGCC 59.248 52.381 0.00 0.00 0.00 4.70
1307 1473 3.380637 AGATGAGCCTTGCATTCATTCAC 59.619 43.478 0.00 0.00 32.03 3.18
1313 1479 3.581755 CCTTGCATTCATTCACAGTTGG 58.418 45.455 0.00 0.00 0.00 3.77
1363 1529 6.037726 GTCATGTGCTTTGCATTCATTCATA 58.962 36.000 0.00 0.00 41.91 2.15
1364 1530 6.700081 GTCATGTGCTTTGCATTCATTCATAT 59.300 34.615 0.00 0.00 41.91 1.78
1365 1531 7.223971 GTCATGTGCTTTGCATTCATTCATATT 59.776 33.333 0.00 0.00 41.91 1.28
1366 1532 7.436970 TCATGTGCTTTGCATTCATTCATATTC 59.563 33.333 0.00 0.00 41.91 1.75
1367 1533 6.631962 TGTGCTTTGCATTCATTCATATTCA 58.368 32.000 0.00 0.00 41.91 2.57
1368 1534 7.269316 TGTGCTTTGCATTCATTCATATTCAT 58.731 30.769 0.00 0.00 41.91 2.57
1419 1585 1.266718 GTGTCCGCATGAAGAAAGCAA 59.733 47.619 0.00 0.00 0.00 3.91
1427 1593 4.618489 CGCATGAAGAAAGCAAAGGTTTAG 59.382 41.667 0.00 0.00 33.25 1.85
1566 1737 0.393537 GTCCACCTCAAGCAGATGGG 60.394 60.000 0.00 0.00 29.09 4.00
1572 1743 2.249413 CTCAAGCAGATGGGCGAGGT 62.249 60.000 0.00 0.00 39.27 3.85
1645 1816 2.325082 ACGTGCGTTTGAGGGATGC 61.325 57.895 0.00 0.00 0.00 3.91
1728 1899 5.705441 CAGGTGTTCTTTCCAACTAATGCTA 59.295 40.000 0.00 0.00 0.00 3.49
1755 1926 6.092748 GTGTCTGAAAAATCAGTTTGTGTGT 58.907 36.000 5.80 0.00 38.75 3.72
1757 1928 7.753132 GTGTCTGAAAAATCAGTTTGTGTGTTA 59.247 33.333 5.80 0.00 38.75 2.41
1776 1947 9.916397 GTGTGTTACTGTATCTACATTATTTGC 57.084 33.333 0.00 0.00 35.36 3.68
1799 1973 5.517054 GCTACAGTACTGAGCTTGTATTGAC 59.483 44.000 29.30 11.60 33.64 3.18
1801 1975 5.230942 ACAGTACTGAGCTTGTATTGACAC 58.769 41.667 29.30 5.97 34.48 3.67
1810 1984 3.499918 GCTTGTATTGACACTGAAGCAGT 59.500 43.478 0.00 0.00 46.51 4.40
1814 1988 6.968131 TGTATTGACACTGAAGCAGTATTC 57.032 37.500 0.00 1.35 43.43 1.75
1820 1994 6.935167 TGACACTGAAGCAGTATTCTGAATA 58.065 36.000 6.01 6.01 43.43 1.75
1837 2013 5.989168 TCTGAATAATACCTATTGGCACGTG 59.011 40.000 12.28 12.28 36.63 4.49
1848 2024 0.249531 TGGCACGTGTCGCTCTTTAA 60.250 50.000 16.50 0.00 0.00 1.52
1850 2026 0.179282 GCACGTGTCGCTCTTTAACG 60.179 55.000 18.38 0.00 40.00 3.18
1863 2040 5.502606 GCTCTTTAACGGATAATGCACTTC 58.497 41.667 0.00 0.00 0.00 3.01
1866 2043 5.518847 TCTTTAACGGATAATGCACTTCTCG 59.481 40.000 0.00 0.00 0.00 4.04
1867 2044 3.520290 AACGGATAATGCACTTCTCGA 57.480 42.857 0.00 0.00 0.00 4.04
1873 2050 2.029838 AATGCACTTCTCGATCCCAC 57.970 50.000 0.00 0.00 0.00 4.61
1874 2051 0.904649 ATGCACTTCTCGATCCCACA 59.095 50.000 0.00 0.00 0.00 4.17
1884 2061 3.118075 TCTCGATCCCACATAATTTGGCA 60.118 43.478 0.00 0.00 32.13 4.92
1894 2071 6.015603 CCCACATAATTTGGCAATTTTTGGTT 60.016 34.615 21.06 6.49 34.29 3.67
1913 2090 2.751806 GTTCTTGCAAAGCTAGGCTCAT 59.248 45.455 0.00 0.00 45.70 2.90
1914 2091 2.636830 TCTTGCAAAGCTAGGCTCATC 58.363 47.619 0.00 0.00 45.70 2.92
1936 2114 8.334632 TCATCGTAATGTATGTTTGCAATACTG 58.665 33.333 0.00 0.00 34.32 2.74
1944 2122 1.474077 GTTTGCAATACTGGCTCCTGG 59.526 52.381 0.00 0.00 0.00 4.45
1972 2150 7.991084 ACACTTGCACATCATATTATAGCAT 57.009 32.000 0.00 0.00 0.00 3.79
1989 2167 4.235079 AGCATTGGGAGTAATTAGTGCA 57.765 40.909 13.14 0.00 34.01 4.57
1995 2173 6.995511 TTGGGAGTAATTAGTGCAATGTAC 57.004 37.500 13.14 0.00 0.00 2.90
1998 2176 7.797062 TGGGAGTAATTAGTGCAATGTACATA 58.203 34.615 9.21 0.00 0.00 2.29
1999 2177 7.931407 TGGGAGTAATTAGTGCAATGTACATAG 59.069 37.037 9.21 0.00 0.00 2.23
2019 2197 6.815359 CATAGTAGATTGCTATGTGCTTTCG 58.185 40.000 1.21 0.00 40.30 3.46
2023 2201 1.533625 TTGCTATGTGCTTTCGCCTT 58.466 45.000 0.00 0.00 43.37 4.35
2036 2214 1.890876 TCGCCTTTGTGTGCTAACAT 58.109 45.000 0.00 0.00 38.92 2.71
2068 2246 3.527533 TCAAAGTGTTAGAAGTGCGTGT 58.472 40.909 0.00 0.00 0.00 4.49
2075 2253 2.148916 TAGAAGTGCGTGTTGTCAGG 57.851 50.000 0.00 0.00 0.00 3.86
2076 2254 0.464036 AGAAGTGCGTGTTGTCAGGA 59.536 50.000 0.00 0.00 0.00 3.86
2078 2256 1.195448 GAAGTGCGTGTTGTCAGGATG 59.805 52.381 0.00 0.00 37.54 3.51
2079 2257 1.207593 GTGCGTGTTGTCAGGATGC 59.792 57.895 0.00 0.00 34.76 3.91
2080 2258 1.227793 TGCGTGTTGTCAGGATGCA 60.228 52.632 0.00 0.00 34.76 3.96
2081 2259 0.606130 TGCGTGTTGTCAGGATGCAT 60.606 50.000 0.00 0.00 34.76 3.96
2082 2260 0.523072 GCGTGTTGTCAGGATGCATT 59.477 50.000 0.00 0.00 34.76 3.56
2084 2262 2.855180 CGTGTTGTCAGGATGCATTTC 58.145 47.619 0.00 0.00 34.76 2.17
2085 2263 2.725759 CGTGTTGTCAGGATGCATTTCG 60.726 50.000 0.00 0.00 34.76 3.46
2103 2331 5.473796 TTTCGTCTCACCACAGTTTAAAC 57.526 39.130 10.47 10.47 0.00 2.01
2247 2475 0.625849 ACCCGAATTGGCCTCAAGAT 59.374 50.000 3.32 0.00 36.19 2.40
2249 2477 2.241176 ACCCGAATTGGCCTCAAGATAA 59.759 45.455 3.32 0.00 36.19 1.75
2253 2481 4.399303 CCGAATTGGCCTCAAGATAAACTT 59.601 41.667 3.32 0.00 39.70 2.66
2259 2487 7.448748 TTGGCCTCAAGATAAACTTAAAGAC 57.551 36.000 3.32 0.00 37.03 3.01
2266 2494 9.413048 CTCAAGATAAACTTAAAGACGAGAGTT 57.587 33.333 0.00 0.00 40.25 3.01
2298 2526 2.810852 CAAAGACTTCTGCCAGGAGAAC 59.189 50.000 7.11 0.46 0.00 3.01
2299 2527 0.980423 AGACTTCTGCCAGGAGAACC 59.020 55.000 7.11 0.00 0.00 3.62
2311 2539 3.133721 CCAGGAGAACCAGGTTAGAGATG 59.866 52.174 4.25 1.16 37.94 2.90
2325 2553 9.482627 CAGGTTAGAGATGCTATTTAGTAAAGG 57.517 37.037 1.21 0.00 0.00 3.11
2347 2575 6.892310 GGAAATTTCCAAATCACTATGCAC 57.108 37.500 28.76 0.00 46.76 4.57
2348 2576 5.516339 GGAAATTTCCAAATCACTATGCACG 59.484 40.000 28.76 0.00 46.76 5.34
2350 2578 1.006086 TCCAAATCACTATGCACGCG 58.994 50.000 3.53 3.53 0.00 6.01
2360 2588 1.660607 CTATGCACGCGTCACAATTCT 59.339 47.619 9.86 0.00 0.00 2.40
2362 2590 0.041400 TGCACGCGTCACAATTCTTG 60.041 50.000 9.86 0.00 0.00 3.02
2364 2592 0.725784 CACGCGTCACAATTCTTGGC 60.726 55.000 9.86 0.00 34.12 4.52
2365 2593 1.163420 ACGCGTCACAATTCTTGGCA 61.163 50.000 5.58 0.00 34.12 4.92
2368 2596 0.109597 CGTCACAATTCTTGGCAGGC 60.110 55.000 0.00 0.00 34.12 4.85
2369 2597 0.961019 GTCACAATTCTTGGCAGGCA 59.039 50.000 0.00 0.00 34.12 4.75
2370 2598 0.961019 TCACAATTCTTGGCAGGCAC 59.039 50.000 0.00 0.00 34.12 5.01
2371 2599 0.675083 CACAATTCTTGGCAGGCACA 59.325 50.000 0.00 0.00 34.12 4.57
2372 2600 0.963962 ACAATTCTTGGCAGGCACAG 59.036 50.000 0.00 0.00 34.12 3.66
2373 2601 0.245539 CAATTCTTGGCAGGCACAGG 59.754 55.000 0.00 0.00 0.00 4.00
2375 2603 0.323178 ATTCTTGGCAGGCACAGGAG 60.323 55.000 0.00 0.00 0.00 3.69
2376 2604 1.708993 TTCTTGGCAGGCACAGGAGT 61.709 55.000 0.00 0.00 0.00 3.85
2379 2607 1.414866 TTGGCAGGCACAGGAGTACA 61.415 55.000 0.00 0.00 0.00 2.90
2393 2646 5.535030 ACAGGAGTACAATTTTTCTGGTTCC 59.465 40.000 0.00 0.00 0.00 3.62
2394 2647 4.760204 AGGAGTACAATTTTTCTGGTTCCG 59.240 41.667 0.00 0.00 0.00 4.30
2398 2651 4.729227 ACAATTTTTCTGGTTCCGTGTT 57.271 36.364 0.00 0.00 0.00 3.32
2400 2653 4.867608 ACAATTTTTCTGGTTCCGTGTTTG 59.132 37.500 0.00 0.00 0.00 2.93
2401 2654 2.570442 TTTTCTGGTTCCGTGTTTGC 57.430 45.000 0.00 0.00 0.00 3.68
2402 2655 1.757682 TTTCTGGTTCCGTGTTTGCT 58.242 45.000 0.00 0.00 0.00 3.91
2403 2656 1.305201 TTCTGGTTCCGTGTTTGCTC 58.695 50.000 0.00 0.00 0.00 4.26
2404 2657 0.468226 TCTGGTTCCGTGTTTGCTCT 59.532 50.000 0.00 0.00 0.00 4.09
2406 2659 1.676006 CTGGTTCCGTGTTTGCTCTTT 59.324 47.619 0.00 0.00 0.00 2.52
2409 2662 2.098443 GGTTCCGTGTTTGCTCTTTTGA 59.902 45.455 0.00 0.00 0.00 2.69
2410 2663 3.428316 GGTTCCGTGTTTGCTCTTTTGAA 60.428 43.478 0.00 0.00 0.00 2.69
2411 2664 4.170256 GTTCCGTGTTTGCTCTTTTGAAA 58.830 39.130 0.00 0.00 0.00 2.69
2412 2665 4.027572 TCCGTGTTTGCTCTTTTGAAAG 57.972 40.909 0.00 0.00 37.36 2.62
2413 2666 3.115554 CCGTGTTTGCTCTTTTGAAAGG 58.884 45.455 3.83 0.00 36.67 3.11
2414 2667 2.535574 CGTGTTTGCTCTTTTGAAAGGC 59.464 45.455 3.83 6.77 36.67 4.35
2415 2668 3.520569 GTGTTTGCTCTTTTGAAAGGCA 58.479 40.909 12.49 12.49 39.06 4.75
2416 2669 3.306973 GTGTTTGCTCTTTTGAAAGGCAC 59.693 43.478 14.78 8.61 39.87 5.01
2417 2670 3.056250 TGTTTGCTCTTTTGAAAGGCACA 60.056 39.130 14.78 9.10 39.87 4.57
2418 2671 4.122046 GTTTGCTCTTTTGAAAGGCACAT 58.878 39.130 14.78 0.00 39.87 3.21
2419 2672 3.374220 TGCTCTTTTGAAAGGCACATG 57.626 42.857 12.49 0.00 37.32 3.21
2420 2673 2.957680 TGCTCTTTTGAAAGGCACATGA 59.042 40.909 0.00 0.00 37.32 3.07
2421 2674 3.005050 TGCTCTTTTGAAAGGCACATGAG 59.995 43.478 0.00 0.00 37.32 2.90
2422 2675 3.005155 GCTCTTTTGAAAGGCACATGAGT 59.995 43.478 0.00 0.00 36.67 3.41
2423 2676 4.216257 GCTCTTTTGAAAGGCACATGAGTA 59.784 41.667 0.00 0.00 36.67 2.59
2424 2677 5.689383 TCTTTTGAAAGGCACATGAGTAC 57.311 39.130 0.00 0.00 36.67 2.73
2425 2678 5.129634 TCTTTTGAAAGGCACATGAGTACA 58.870 37.500 0.00 0.00 36.67 2.90
2426 2679 5.592282 TCTTTTGAAAGGCACATGAGTACAA 59.408 36.000 0.00 0.00 36.67 2.41
2427 2680 4.829064 TTGAAAGGCACATGAGTACAAC 57.171 40.909 0.00 0.00 0.00 3.32
2428 2681 4.085357 TGAAAGGCACATGAGTACAACT 57.915 40.909 0.00 0.00 0.00 3.16
2429 2682 4.460263 TGAAAGGCACATGAGTACAACTT 58.540 39.130 0.00 0.00 0.00 2.66
2430 2683 5.616270 TGAAAGGCACATGAGTACAACTTA 58.384 37.500 0.00 0.00 0.00 2.24
2431 2684 6.058833 TGAAAGGCACATGAGTACAACTTAA 58.941 36.000 0.00 0.00 0.00 1.85
2432 2685 6.544197 TGAAAGGCACATGAGTACAACTTAAA 59.456 34.615 0.00 0.00 0.00 1.52
2433 2686 6.560253 AAGGCACATGAGTACAACTTAAAG 57.440 37.500 0.00 0.00 0.00 1.85
2434 2687 5.865085 AGGCACATGAGTACAACTTAAAGA 58.135 37.500 0.00 0.00 0.00 2.52
2435 2688 6.476378 AGGCACATGAGTACAACTTAAAGAT 58.524 36.000 0.00 0.00 0.00 2.40
2436 2689 6.372659 AGGCACATGAGTACAACTTAAAGATG 59.627 38.462 0.00 0.00 0.00 2.90
2437 2690 6.149474 GGCACATGAGTACAACTTAAAGATGT 59.851 38.462 0.00 0.00 35.36 3.06
2438 2691 7.333423 GGCACATGAGTACAACTTAAAGATGTA 59.667 37.037 0.00 0.00 33.18 2.29
2439 2692 8.383619 GCACATGAGTACAACTTAAAGATGTAG 58.616 37.037 0.00 0.00 34.75 2.74
2440 2693 9.424319 CACATGAGTACAACTTAAAGATGTAGT 57.576 33.333 0.00 5.66 39.06 2.73
2441 2694 9.424319 ACATGAGTACAACTTAAAGATGTAGTG 57.576 33.333 0.00 5.16 37.29 2.74
2442 2695 9.424319 CATGAGTACAACTTAAAGATGTAGTGT 57.576 33.333 9.65 0.00 37.29 3.55
2443 2696 9.998106 ATGAGTACAACTTAAAGATGTAGTGTT 57.002 29.630 9.65 0.00 37.29 3.32
2444 2697 9.826574 TGAGTACAACTTAAAGATGTAGTGTTT 57.173 29.630 9.65 0.00 37.29 2.83
2446 2699 8.557029 AGTACAACTTAAAGATGTAGTGTTTGC 58.443 33.333 5.27 0.00 36.28 3.68
2447 2700 7.568199 ACAACTTAAAGATGTAGTGTTTGCT 57.432 32.000 0.00 0.00 28.94 3.91
2448 2701 7.639945 ACAACTTAAAGATGTAGTGTTTGCTC 58.360 34.615 0.00 0.00 28.94 4.26
2449 2702 7.499232 ACAACTTAAAGATGTAGTGTTTGCTCT 59.501 33.333 0.00 0.00 28.94 4.09
2450 2703 8.345565 CAACTTAAAGATGTAGTGTTTGCTCTT 58.654 33.333 0.00 0.00 0.00 2.85
2451 2704 8.451908 ACTTAAAGATGTAGTGTTTGCTCTTT 57.548 30.769 0.00 0.00 36.96 2.52
2452 2705 8.903820 ACTTAAAGATGTAGTGTTTGCTCTTTT 58.096 29.630 0.00 0.00 35.32 2.27
2453 2706 9.173939 CTTAAAGATGTAGTGTTTGCTCTTTTG 57.826 33.333 0.00 0.00 35.32 2.44
2454 2707 6.942532 AAGATGTAGTGTTTGCTCTTTTGA 57.057 33.333 0.00 0.00 0.00 2.69
2455 2708 6.942532 AGATGTAGTGTTTGCTCTTTTGAA 57.057 33.333 0.00 0.00 0.00 2.69
2456 2709 7.333528 AGATGTAGTGTTTGCTCTTTTGAAA 57.666 32.000 0.00 0.00 0.00 2.69
2457 2710 7.420800 AGATGTAGTGTTTGCTCTTTTGAAAG 58.579 34.615 0.00 0.00 37.36 2.62
2458 2711 5.890334 TGTAGTGTTTGCTCTTTTGAAAGG 58.110 37.500 3.83 0.00 36.67 3.11
2459 2712 3.785486 AGTGTTTGCTCTTTTGAAAGGC 58.215 40.909 3.83 6.77 36.67 4.35
2460 2713 3.448660 AGTGTTTGCTCTTTTGAAAGGCT 59.551 39.130 13.93 0.00 36.67 4.58
2461 2714 4.081476 AGTGTTTGCTCTTTTGAAAGGCTT 60.081 37.500 0.00 0.00 36.67 4.35
2462 2715 4.033243 GTGTTTGCTCTTTTGAAAGGCTTG 59.967 41.667 0.00 0.00 36.67 4.01
2463 2716 4.183865 GTTTGCTCTTTTGAAAGGCTTGT 58.816 39.130 0.00 0.00 36.67 3.16
2464 2717 5.105554 TGTTTGCTCTTTTGAAAGGCTTGTA 60.106 36.000 0.00 0.00 36.67 2.41
2465 2718 4.568152 TGCTCTTTTGAAAGGCTTGTAC 57.432 40.909 0.00 0.00 36.67 2.90
2466 2719 3.317993 TGCTCTTTTGAAAGGCTTGTACC 59.682 43.478 0.00 0.00 36.67 3.34
2467 2720 3.305403 GCTCTTTTGAAAGGCTTGTACCC 60.305 47.826 0.00 0.00 36.67 3.69
2468 2721 2.882137 TCTTTTGAAAGGCTTGTACCCG 59.118 45.455 0.00 0.00 36.67 5.28
2469 2722 2.351706 TTTGAAAGGCTTGTACCCGT 57.648 45.000 0.00 0.00 0.00 5.28
2473 2726 2.104451 TGAAAGGCTTGTACCCGTAACA 59.896 45.455 0.00 0.00 0.00 2.41
2483 2736 6.678655 GCTTGTACCCGTAACAAAAGAAAGTT 60.679 38.462 0.00 0.00 36.46 2.66
2504 2757 8.051901 AAGTTTTCTTAGGGATAATTTCCACG 57.948 34.615 8.36 0.00 41.49 4.94
2569 2822 4.832266 TGGTATTCTGTTGCCAAGATTGTT 59.168 37.500 0.00 0.00 0.00 2.83
2647 2900 1.128200 GCCCTCCTTTGGTTTTTGGT 58.872 50.000 0.00 0.00 0.00 3.67
2785 3038 6.549433 AAATATCATGTTTGACCTGGCAAT 57.451 33.333 0.00 0.00 33.85 3.56
2927 3180 7.861629 TCCTGATTGTTCCTGTTGTTAGATAT 58.138 34.615 0.00 0.00 0.00 1.63
2976 3229 5.470047 AGTCCCTGTTGTTATATCGATCC 57.530 43.478 0.00 0.00 0.00 3.36
2990 3243 2.550978 TCGATCCGCTCTTCAATTTCC 58.449 47.619 0.00 0.00 0.00 3.13
3089 3344 0.550914 TCTCCTGGCACCTGTTTGTT 59.449 50.000 0.00 0.00 0.00 2.83
3103 3358 9.476202 GCACCTGTTTGTTCTTTATATTCTTTT 57.524 29.630 0.00 0.00 0.00 2.27
3261 3525 1.953559 TTATGCCCTGAACAGCGATC 58.046 50.000 0.00 0.00 0.00 3.69
3316 3580 2.563086 GAATCGTTGAAGCGGCACCG 62.563 60.000 4.30 4.30 43.09 4.94
3335 3599 1.544686 GTTGGCGTGTTGTTGAAGTG 58.455 50.000 0.00 0.00 0.00 3.16
3395 3659 6.426646 AGTCTCCAGTAACTCTTTTGATGT 57.573 37.500 0.00 0.00 0.00 3.06
3439 3715 1.538276 GCACGCTGCATAAATGTGTC 58.462 50.000 0.00 0.00 44.26 3.67
3444 3720 2.223409 CGCTGCATAAATGTGTCTGCAT 60.223 45.455 0.00 0.00 43.12 3.96
3447 3723 4.499188 GCTGCATAAATGTGTCTGCATGAT 60.499 41.667 0.00 0.00 43.12 2.45
3462 3746 3.684305 TGCATGATTGTACTGAAACTCCG 59.316 43.478 0.00 0.00 0.00 4.63
3468 3752 4.742438 TTGTACTGAAACTCCGCAAATC 57.258 40.909 0.00 0.00 0.00 2.17
3533 3817 0.386476 ACAAGCTGTGGCACATTGTG 59.614 50.000 29.09 23.39 44.52 3.33
3590 3874 0.173708 ACGAGAAGGCAGAATCGTCC 59.826 55.000 0.00 0.00 44.48 4.79
3594 3878 3.682292 AAGGCAGAATCGTCCGGGC 62.682 63.158 0.00 0.00 0.00 6.13
3633 3917 0.320421 TAGCGTCTGCACAAAGGACC 60.320 55.000 0.00 0.00 46.23 4.46
3642 3926 0.537371 CACAAAGGACCTGGTGGACC 60.537 60.000 2.82 0.00 46.33 4.46
3691 3975 6.164176 ACAGCTATGTGAACAAGTAGGTTAC 58.836 40.000 0.00 0.00 38.57 2.50
3692 3976 6.163476 CAGCTATGTGAACAAGTAGGTTACA 58.837 40.000 0.00 0.00 0.00 2.41
3697 3986 6.665992 TGTGAACAAGTAGGTTACATCTCT 57.334 37.500 0.00 0.00 0.00 3.10
3702 3991 5.952033 ACAAGTAGGTTACATCTCTCGTTC 58.048 41.667 0.00 0.00 0.00 3.95
3718 4007 0.784778 GTTCGCTCGGTCAGAACTTG 59.215 55.000 0.88 0.00 40.57 3.16
3730 4019 2.093500 TCAGAACTTGTCACACTGCACT 60.093 45.455 0.00 0.00 0.00 4.40
3731 4020 2.031314 CAGAACTTGTCACACTGCACTG 59.969 50.000 0.00 0.00 0.00 3.66
3732 4021 0.734889 AACTTGTCACACTGCACTGC 59.265 50.000 0.00 0.00 0.00 4.40
3733 4022 0.392863 ACTTGTCACACTGCACTGCA 60.393 50.000 3.11 3.11 36.92 4.41
3734 4023 0.028505 CTTGTCACACTGCACTGCAC 59.971 55.000 0.00 0.00 33.79 4.57
3735 4024 0.676151 TTGTCACACTGCACTGCACA 60.676 50.000 0.00 0.00 33.79 4.57
3736 4025 0.676151 TGTCACACTGCACTGCACAA 60.676 50.000 0.00 0.00 33.79 3.33
3738 4027 1.066002 GTCACACTGCACTGCACAATT 59.934 47.619 0.00 0.00 33.79 2.32
3739 4028 2.290367 GTCACACTGCACTGCACAATTA 59.710 45.455 0.00 0.00 33.79 1.40
3740 4029 3.058016 GTCACACTGCACTGCACAATTAT 60.058 43.478 0.00 0.00 33.79 1.28
3742 4031 2.489329 ACACTGCACTGCACAATTATCC 59.511 45.455 0.00 0.00 33.79 2.59
3743 4032 2.751259 CACTGCACTGCACAATTATCCT 59.249 45.455 0.00 0.00 33.79 3.24
3744 4033 2.751259 ACTGCACTGCACAATTATCCTG 59.249 45.455 0.00 0.00 33.79 3.86
3745 4034 1.473677 TGCACTGCACAATTATCCTGC 59.526 47.619 0.00 0.00 31.71 4.85
3746 4035 1.473677 GCACTGCACAATTATCCTGCA 59.526 47.619 0.00 0.00 38.60 4.41
3749 4038 1.105457 TGCACAATTATCCTGCAGCC 58.895 50.000 8.66 0.00 36.00 4.85
3750 4039 1.105457 GCACAATTATCCTGCAGCCA 58.895 50.000 8.66 0.00 0.00 4.75
3751 4040 1.066605 GCACAATTATCCTGCAGCCAG 59.933 52.381 8.66 0.00 38.85 4.85
3752 4041 2.372264 CACAATTATCCTGCAGCCAGT 58.628 47.619 8.66 0.00 37.38 4.00
3753 4042 3.544684 CACAATTATCCTGCAGCCAGTA 58.455 45.455 8.66 0.00 37.38 2.74
3858 4148 1.908340 CTGAAGGGTCTGGGCTGGAG 61.908 65.000 0.00 0.00 0.00 3.86
3936 4226 3.551496 TTCTGCAGGGTTCCGCTGG 62.551 63.158 15.13 0.00 43.28 4.85
4006 4296 3.469863 GAACCGTGGTGGCTGGTGA 62.470 63.158 0.00 0.00 43.94 4.02
4038 4328 6.425721 TGTTTTATGGTCGAACTTCTGTAAGG 59.574 38.462 0.33 0.00 37.01 2.69
4071 4361 2.811317 CGGAGTCTCGCAACAGCC 60.811 66.667 0.00 0.00 0.00 4.85
4086 4376 0.950836 CAGCCACAATGGTCGAACAA 59.049 50.000 7.51 0.00 40.46 2.83
4115 4439 5.498159 TGCGTAACAGCGATGAAATAAATC 58.502 37.500 8.12 0.00 40.67 2.17
4116 4440 4.904154 GCGTAACAGCGATGAAATAAATCC 59.096 41.667 8.12 0.00 0.00 3.01
4117 4441 5.277345 GCGTAACAGCGATGAAATAAATCCT 60.277 40.000 8.12 0.00 0.00 3.24
4118 4442 6.129393 CGTAACAGCGATGAAATAAATCCTG 58.871 40.000 8.12 0.00 32.81 3.86
4119 4443 4.558538 ACAGCGATGAAATAAATCCTGC 57.441 40.909 8.12 0.00 31.17 4.85
4120 4444 4.202441 ACAGCGATGAAATAAATCCTGCT 58.798 39.130 8.12 0.00 31.17 4.24
4122 4446 5.822519 ACAGCGATGAAATAAATCCTGCTTA 59.177 36.000 8.12 0.00 31.17 3.09
4148 5254 1.768684 TTGCCCCCTGTCTGACTGTC 61.769 60.000 9.51 0.00 0.00 3.51
4224 5591 2.544726 GGCTATATTGCCGTCAGCC 58.455 57.895 12.50 3.54 44.54 4.85
4225 5592 0.035458 GGCTATATTGCCGTCAGCCT 59.965 55.000 12.50 0.00 46.70 4.58
4226 5593 1.151668 GCTATATTGCCGTCAGCCTG 58.848 55.000 0.00 0.00 42.71 4.85
4227 5594 1.270305 GCTATATTGCCGTCAGCCTGA 60.270 52.381 0.00 0.00 42.71 3.86
4228 5595 2.408050 CTATATTGCCGTCAGCCTGAC 58.592 52.381 14.98 14.98 43.65 3.51
4301 5935 6.849085 TTTGGGCATACACAATGAAATACT 57.151 33.333 0.00 0.00 37.86 2.12
4304 5938 6.418946 TGGGCATACACAATGAAATACTGTA 58.581 36.000 0.00 0.00 37.86 2.74
4325 5959 1.282157 GGTTATTCTCAGGCTGTGGGT 59.718 52.381 15.27 7.07 0.00 4.51
4327 5961 1.656587 TATTCTCAGGCTGTGGGTGT 58.343 50.000 15.27 2.35 0.00 4.16
4328 5962 0.326264 ATTCTCAGGCTGTGGGTGTC 59.674 55.000 15.27 0.00 0.00 3.67
4329 5963 0.764369 TTCTCAGGCTGTGGGTGTCT 60.764 55.000 15.27 0.00 0.00 3.41
4330 5964 0.764369 TCTCAGGCTGTGGGTGTCTT 60.764 55.000 15.27 0.00 0.00 3.01
4331 5965 0.109342 CTCAGGCTGTGGGTGTCTTT 59.891 55.000 15.27 0.00 0.00 2.52
4332 5966 0.550914 TCAGGCTGTGGGTGTCTTTT 59.449 50.000 15.27 0.00 0.00 2.27
4333 5967 1.064017 TCAGGCTGTGGGTGTCTTTTT 60.064 47.619 15.27 0.00 0.00 1.94
4363 6437 7.743104 AGATTCACGATTAATTTCACAGACAC 58.257 34.615 0.00 0.00 0.00 3.67
4364 6438 6.852858 TTCACGATTAATTTCACAGACACA 57.147 33.333 0.00 0.00 0.00 3.72
4365 6439 6.223138 TCACGATTAATTTCACAGACACAC 57.777 37.500 0.00 0.00 0.00 3.82
4366 6440 5.178623 TCACGATTAATTTCACAGACACACC 59.821 40.000 0.00 0.00 0.00 4.16
4387 6461 0.038166 ACAGGGGTGCCAGTATTGTG 59.962 55.000 0.00 0.00 0.00 3.33
4388 6462 1.000896 AGGGGTGCCAGTATTGTGC 60.001 57.895 0.00 0.00 0.00 4.57
4390 6464 0.684153 GGGGTGCCAGTATTGTGCAT 60.684 55.000 0.00 0.00 34.52 3.96
4394 6468 2.029110 GGTGCCAGTATTGTGCATTGTT 60.029 45.455 0.00 0.00 34.52 2.83
4418 6492 4.989797 TGCATGTTCTTATTGTGCAAAAGG 59.010 37.500 0.00 0.00 42.22 3.11
4421 6495 5.452078 TGTTCTTATTGTGCAAAAGGGAG 57.548 39.130 0.00 0.00 0.00 4.30
4422 6496 4.892934 TGTTCTTATTGTGCAAAAGGGAGT 59.107 37.500 0.00 0.00 0.00 3.85
4423 6497 5.221224 TGTTCTTATTGTGCAAAAGGGAGTG 60.221 40.000 0.00 0.00 0.00 3.51
4440 6534 2.928116 GAGTGTTACTGGAACCGCATAC 59.072 50.000 0.00 0.00 37.22 2.39
4475 6569 8.830201 TCATGATTTTCAAATGTTAAACCTGG 57.170 30.769 0.00 0.00 0.00 4.45
4510 6669 7.175293 ACAAAAAGGTAACATCGGCTTAACATA 59.825 33.333 0.00 0.00 41.41 2.29
4515 6674 6.706270 AGGTAACATCGGCTTAACATATTGAG 59.294 38.462 0.00 0.00 41.41 3.02
4517 6676 4.450976 ACATCGGCTTAACATATTGAGCA 58.549 39.130 2.70 0.00 46.64 4.26
4570 6729 2.166664 GGAGAACTCCGTAGACTTGCAT 59.833 50.000 5.06 0.00 40.36 3.96
4587 6746 5.516339 ACTTGCATGACACTTTTCTTTTTCG 59.484 36.000 6.60 0.00 0.00 3.46
4588 6747 5.242069 TGCATGACACTTTTCTTTTTCGA 57.758 34.783 0.00 0.00 0.00 3.71
4589 6748 5.645624 TGCATGACACTTTTCTTTTTCGAA 58.354 33.333 0.00 0.00 0.00 3.71
4590 6749 6.096036 TGCATGACACTTTTCTTTTTCGAAA 58.904 32.000 6.47 6.47 0.00 3.46
4644 6806 8.263940 TCATTCAGTGGCAAATAAAGTAGTAC 57.736 34.615 0.00 0.00 0.00 2.73
4645 6807 7.880713 TCATTCAGTGGCAAATAAAGTAGTACA 59.119 33.333 2.52 0.00 0.00 2.90
4648 6810 5.123344 CAGTGGCAAATAAAGTAGTACACCC 59.877 44.000 2.52 0.00 0.00 4.61
4649 6811 4.397103 GTGGCAAATAAAGTAGTACACCCC 59.603 45.833 2.52 0.00 0.00 4.95
4652 6814 4.623647 GCAAATAAAGTAGTACACCCCCGA 60.624 45.833 2.52 0.00 0.00 5.14
4653 6815 4.743057 AATAAAGTAGTACACCCCCGAC 57.257 45.455 2.52 0.00 0.00 4.79
4655 6817 0.411058 AAGTAGTACACCCCCGACCT 59.589 55.000 2.52 0.00 0.00 3.85
4656 6818 1.298953 AGTAGTACACCCCCGACCTA 58.701 55.000 2.52 0.00 0.00 3.08
4657 6819 1.213926 AGTAGTACACCCCCGACCTAG 59.786 57.143 2.52 0.00 0.00 3.02
4658 6820 1.064389 GTAGTACACCCCCGACCTAGT 60.064 57.143 0.00 0.00 0.00 2.57
4659 6821 1.298953 AGTACACCCCCGACCTAGTA 58.701 55.000 0.00 0.00 0.00 1.82
4660 6822 1.855599 AGTACACCCCCGACCTAGTAT 59.144 52.381 0.00 0.00 0.00 2.12
4661 6823 3.056080 AGTACACCCCCGACCTAGTATA 58.944 50.000 0.00 0.00 0.00 1.47
4662 6824 3.463329 AGTACACCCCCGACCTAGTATAA 59.537 47.826 0.00 0.00 0.00 0.98
4663 6825 3.625252 ACACCCCCGACCTAGTATAAT 57.375 47.619 0.00 0.00 0.00 1.28
4664 6826 4.747265 ACACCCCCGACCTAGTATAATA 57.253 45.455 0.00 0.00 0.00 0.98
4665 6827 5.280998 ACACCCCCGACCTAGTATAATAT 57.719 43.478 0.00 0.00 0.00 1.28
4666 6828 6.407320 ACACCCCCGACCTAGTATAATATA 57.593 41.667 0.00 0.00 0.00 0.86
4667 6829 6.804083 ACACCCCCGACCTAGTATAATATAA 58.196 40.000 0.00 0.00 0.00 0.98
4668 6830 6.894103 ACACCCCCGACCTAGTATAATATAAG 59.106 42.308 0.00 0.00 0.00 1.73
4738 6909 8.801882 AATAACAACATATATTATGGGACGGG 57.198 34.615 0.10 0.00 0.00 5.28
4767 6940 3.477530 ACAGTCTAGGCACTTCAAAACC 58.522 45.455 0.00 0.00 41.75 3.27
4768 6941 3.118038 ACAGTCTAGGCACTTCAAAACCA 60.118 43.478 0.00 0.00 41.75 3.67
4769 6942 3.882888 CAGTCTAGGCACTTCAAAACCAA 59.117 43.478 0.00 0.00 41.75 3.67
4770 6943 3.883489 AGTCTAGGCACTTCAAAACCAAC 59.117 43.478 0.00 0.00 41.75 3.77
4774 6947 1.570813 GCACTTCAAAACCAACTGCC 58.429 50.000 0.00 0.00 0.00 4.85
4777 6950 2.356382 CACTTCAAAACCAACTGCCGTA 59.644 45.455 0.00 0.00 0.00 4.02
4787 6960 4.076394 ACCAACTGCCGTAACATTATGTT 58.924 39.130 15.22 15.22 43.88 2.71
4830 7004 0.975556 TCGCCCACATGGAGCTAGAA 60.976 55.000 0.00 0.00 37.39 2.10
4844 7018 3.078594 GCTAGAAGAGCGGAGAAGAAG 57.921 52.381 0.00 0.00 42.62 2.85
4845 7019 2.685897 GCTAGAAGAGCGGAGAAGAAGA 59.314 50.000 0.00 0.00 42.62 2.87
4846 7020 3.243068 GCTAGAAGAGCGGAGAAGAAGAG 60.243 52.174 0.00 0.00 42.62 2.85
4847 7021 2.802719 AGAAGAGCGGAGAAGAAGAGT 58.197 47.619 0.00 0.00 0.00 3.24
4848 7022 2.491693 AGAAGAGCGGAGAAGAAGAGTG 59.508 50.000 0.00 0.00 0.00 3.51
4849 7023 1.181786 AGAGCGGAGAAGAAGAGTGG 58.818 55.000 0.00 0.00 0.00 4.00
4850 7024 0.174617 GAGCGGAGAAGAAGAGTGGG 59.825 60.000 0.00 0.00 0.00 4.61
4851 7025 1.219393 GCGGAGAAGAAGAGTGGGG 59.781 63.158 0.00 0.00 0.00 4.96
4852 7026 1.258445 GCGGAGAAGAAGAGTGGGGA 61.258 60.000 0.00 0.00 0.00 4.81
4853 7027 1.490574 CGGAGAAGAAGAGTGGGGAT 58.509 55.000 0.00 0.00 0.00 3.85
4854 7028 2.667470 CGGAGAAGAAGAGTGGGGATA 58.333 52.381 0.00 0.00 0.00 2.59
4855 7029 2.625790 CGGAGAAGAAGAGTGGGGATAG 59.374 54.545 0.00 0.00 0.00 2.08
4856 7030 3.688702 CGGAGAAGAAGAGTGGGGATAGA 60.689 52.174 0.00 0.00 0.00 1.98
4857 7031 4.488770 GGAGAAGAAGAGTGGGGATAGAT 58.511 47.826 0.00 0.00 0.00 1.98
4858 7032 4.904853 GGAGAAGAAGAGTGGGGATAGATT 59.095 45.833 0.00 0.00 0.00 2.40
4859 7033 5.368230 GGAGAAGAAGAGTGGGGATAGATTT 59.632 44.000 0.00 0.00 0.00 2.17
4860 7034 6.126623 GGAGAAGAAGAGTGGGGATAGATTTT 60.127 42.308 0.00 0.00 0.00 1.82
4861 7035 7.277405 AGAAGAAGAGTGGGGATAGATTTTT 57.723 36.000 0.00 0.00 0.00 1.94
4917 7091 8.862325 AATGTTCAAACACATAAGGATACAGA 57.138 30.769 0.00 0.00 42.51 3.41
4918 7092 9.466497 AATGTTCAAACACATAAGGATACAGAT 57.534 29.630 0.00 0.00 42.51 2.90
4919 7093 8.267620 TGTTCAAACACATAAGGATACAGATG 57.732 34.615 0.00 0.00 37.07 2.90
4920 7094 8.100164 TGTTCAAACACATAAGGATACAGATGA 58.900 33.333 0.00 0.00 35.52 2.92
4921 7095 9.113838 GTTCAAACACATAAGGATACAGATGAT 57.886 33.333 0.00 0.00 41.41 2.45
4925 7099 9.645059 AAACACATAAGGATACAGATGATATCG 57.355 33.333 0.00 0.00 41.41 2.92
4926 7100 7.776107 ACACATAAGGATACAGATGATATCGG 58.224 38.462 0.00 0.00 41.41 4.18
4927 7101 7.147828 ACACATAAGGATACAGATGATATCGGG 60.148 40.741 0.00 0.00 41.41 5.14
4928 7102 4.744795 AAGGATACAGATGATATCGGGC 57.255 45.455 0.00 0.00 41.41 6.13
4929 7103 3.713003 AGGATACAGATGATATCGGGCA 58.287 45.455 0.00 0.00 41.41 5.36
4930 7104 3.703556 AGGATACAGATGATATCGGGCAG 59.296 47.826 0.00 0.00 41.41 4.85
4931 7105 3.701542 GGATACAGATGATATCGGGCAGA 59.298 47.826 0.00 0.00 30.94 4.26
4932 7106 4.202101 GGATACAGATGATATCGGGCAGAG 60.202 50.000 0.00 0.00 30.94 3.35
4933 7107 2.881734 ACAGATGATATCGGGCAGAGA 58.118 47.619 0.00 0.00 0.00 3.10
4934 7108 3.234353 ACAGATGATATCGGGCAGAGAA 58.766 45.455 0.00 0.00 0.00 2.87
4935 7109 3.257873 ACAGATGATATCGGGCAGAGAAG 59.742 47.826 0.00 0.00 0.00 2.85
4936 7110 3.257873 CAGATGATATCGGGCAGAGAAGT 59.742 47.826 0.00 0.00 0.00 3.01
4937 7111 4.460731 CAGATGATATCGGGCAGAGAAGTA 59.539 45.833 0.00 0.00 0.00 2.24
4938 7112 5.047731 CAGATGATATCGGGCAGAGAAGTAA 60.048 44.000 0.00 0.00 0.00 2.24
4939 7113 4.855715 TGATATCGGGCAGAGAAGTAAG 57.144 45.455 0.00 0.00 0.00 2.34
4940 7114 3.005897 TGATATCGGGCAGAGAAGTAAGC 59.994 47.826 0.00 0.00 0.00 3.09
4941 7115 0.466124 ATCGGGCAGAGAAGTAAGCC 59.534 55.000 0.00 0.00 46.28 4.35
4944 7118 3.935993 GGCAGAGAAGTAAGCCACA 57.064 52.632 0.00 0.00 46.26 4.17
4945 7119 1.443802 GGCAGAGAAGTAAGCCACAC 58.556 55.000 0.00 0.00 46.26 3.82
4946 7120 1.270839 GGCAGAGAAGTAAGCCACACA 60.271 52.381 0.00 0.00 46.26 3.72
4947 7121 2.616510 GGCAGAGAAGTAAGCCACACAT 60.617 50.000 0.00 0.00 46.26 3.21
4948 7122 2.417933 GCAGAGAAGTAAGCCACACATG 59.582 50.000 0.00 0.00 0.00 3.21
4971 7145 3.215245 CGGGAGGGAGAGAAGCAG 58.785 66.667 0.00 0.00 0.00 4.24
4972 7146 2.907236 GGGAGGGAGAGAAGCAGC 59.093 66.667 0.00 0.00 0.00 5.25
4973 7147 2.741055 GGGAGGGAGAGAAGCAGCC 61.741 68.421 0.00 0.00 0.00 4.85
4974 7148 2.498726 GAGGGAGAGAAGCAGCCG 59.501 66.667 0.00 0.00 0.00 5.52
4975 7149 3.731653 GAGGGAGAGAAGCAGCCGC 62.732 68.421 0.00 0.00 38.99 6.53
4976 7150 4.847444 GGGAGAGAAGCAGCCGCC 62.847 72.222 0.00 0.00 39.83 6.13
4977 7151 3.780173 GGAGAGAAGCAGCCGCCT 61.780 66.667 0.00 0.00 39.83 5.52
4978 7152 2.267324 GAGAGAAGCAGCCGCCTT 59.733 61.111 0.00 0.00 39.83 4.35
4979 7153 1.517832 GAGAGAAGCAGCCGCCTTA 59.482 57.895 0.00 0.00 39.83 2.69
4980 7154 0.529555 GAGAGAAGCAGCCGCCTTAG 60.530 60.000 0.00 0.00 39.83 2.18
4981 7155 2.124942 AGAAGCAGCCGCCTTAGC 60.125 61.111 0.00 0.00 39.83 3.09
4982 7156 2.124942 GAAGCAGCCGCCTTAGCT 60.125 61.111 0.00 0.00 42.70 3.32
4983 7157 1.144057 GAAGCAGCCGCCTTAGCTA 59.856 57.895 0.00 0.00 38.95 3.32
4984 7158 0.462047 GAAGCAGCCGCCTTAGCTAA 60.462 55.000 5.94 5.94 38.95 3.09
4985 7159 0.462759 AAGCAGCCGCCTTAGCTAAG 60.463 55.000 24.11 24.11 38.95 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 119 1.371635 CAAGGTTTTGCTTCCGCGG 60.372 57.895 22.12 22.12 39.65 6.46
191 201 1.134530 CTTTAGCGAGAGTCACGGCG 61.135 60.000 11.95 4.80 0.00 6.46
211 221 0.606401 CCGTGAGAGGCATGGTTGTT 60.606 55.000 0.00 0.00 46.65 2.83
306 335 6.210078 CGGTCTTCTTTAGCTATTCGATCTT 58.790 40.000 0.00 0.00 0.00 2.40
307 336 5.278561 CCGGTCTTCTTTAGCTATTCGATCT 60.279 44.000 0.00 0.00 0.00 2.75
315 344 1.007479 TCCCCCGGTCTTCTTTAGCTA 59.993 52.381 0.00 0.00 0.00 3.32
322 351 1.063654 TGGTTTTCCCCCGGTCTTCT 61.064 55.000 0.00 0.00 39.73 2.85
366 398 4.567159 ACGCGTTTTTGGCTTTTTAAATGA 59.433 33.333 5.58 0.00 0.00 2.57
405 442 5.667466 ACGCTCTCTCCGGATTTTATTTTA 58.333 37.500 3.57 0.00 0.00 1.52
407 449 4.120589 GACGCTCTCTCCGGATTTTATTT 58.879 43.478 3.57 0.00 0.00 1.40
410 452 1.407979 GGACGCTCTCTCCGGATTTTA 59.592 52.381 3.57 0.00 0.00 1.52
516 558 1.901464 GCGCTCCACCCCTCAAAAA 60.901 57.895 0.00 0.00 0.00 1.94
517 559 2.282180 GCGCTCCACCCCTCAAAA 60.282 61.111 0.00 0.00 0.00 2.44
518 560 2.351924 AAAGCGCTCCACCCCTCAAA 62.352 55.000 12.06 0.00 0.00 2.69
519 561 2.829384 AAAGCGCTCCACCCCTCAA 61.829 57.895 12.06 0.00 0.00 3.02
520 562 3.249189 AAAGCGCTCCACCCCTCA 61.249 61.111 12.06 0.00 0.00 3.86
521 563 2.747855 CAAAGCGCTCCACCCCTC 60.748 66.667 12.06 0.00 0.00 4.30
531 573 3.207547 AACCGGGAAAGCAAAGCGC 62.208 57.895 6.32 0.00 42.91 5.92
532 574 1.081442 GAACCGGGAAAGCAAAGCG 60.081 57.895 6.32 0.00 0.00 4.68
533 575 1.179174 AGGAACCGGGAAAGCAAAGC 61.179 55.000 6.32 0.00 0.00 3.51
534 576 0.881796 GAGGAACCGGGAAAGCAAAG 59.118 55.000 6.32 0.00 0.00 2.77
535 577 0.538746 GGAGGAACCGGGAAAGCAAA 60.539 55.000 6.32 0.00 0.00 3.68
536 578 1.074248 GGAGGAACCGGGAAAGCAA 59.926 57.895 6.32 0.00 0.00 3.91
537 579 1.838073 GAGGAGGAACCGGGAAAGCA 61.838 60.000 6.32 0.00 44.74 3.91
538 580 1.078356 GAGGAGGAACCGGGAAAGC 60.078 63.158 6.32 0.00 44.74 3.51
539 581 0.910088 AGGAGGAGGAACCGGGAAAG 60.910 60.000 6.32 0.00 44.74 2.62
540 582 0.475048 AAGGAGGAGGAACCGGGAAA 60.475 55.000 6.32 0.00 44.74 3.13
541 583 0.475048 AAAGGAGGAGGAACCGGGAA 60.475 55.000 6.32 0.00 44.74 3.97
542 584 0.908180 GAAAGGAGGAGGAACCGGGA 60.908 60.000 6.32 0.00 44.74 5.14
543 585 0.910088 AGAAAGGAGGAGGAACCGGG 60.910 60.000 6.32 0.00 44.74 5.73
627 708 2.616797 TTTGAGGCAACCGCTGGTCA 62.617 55.000 0.69 0.00 33.12 4.02
786 871 2.280119 GTGGAGCAGACACGCACA 60.280 61.111 0.00 0.00 0.00 4.57
809 894 1.835121 GGAACAAAAACACGTGGAGC 58.165 50.000 21.57 0.00 0.00 4.70
904 989 1.227002 GTCGTAGCACTAGCAGCCC 60.227 63.158 4.30 0.00 45.49 5.19
927 1012 9.079367 ACTGTAAAGTACGCAGAACTGGAAGTA 62.079 40.741 13.72 0.00 38.91 2.24
942 1027 2.806244 CCACCAGTGCACTGTAAAGTAC 59.194 50.000 37.55 0.53 42.27 2.73
943 1028 2.436542 ACCACCAGTGCACTGTAAAGTA 59.563 45.455 37.55 0.00 42.27 2.24
944 1029 1.211949 ACCACCAGTGCACTGTAAAGT 59.788 47.619 37.55 27.48 42.27 2.66
945 1030 1.603802 CACCACCAGTGCACTGTAAAG 59.396 52.381 37.55 26.89 42.27 1.85
946 1031 1.674359 CACCACCAGTGCACTGTAAA 58.326 50.000 37.55 0.00 42.27 2.01
947 1032 0.179032 CCACCACCAGTGCACTGTAA 60.179 55.000 37.55 0.00 45.83 2.41
973 1097 1.077858 CTGCCCTTCTTCCTCCTGC 60.078 63.158 0.00 0.00 0.00 4.85
974 1098 0.911525 TCCTGCCCTTCTTCCTCCTG 60.912 60.000 0.00 0.00 0.00 3.86
975 1099 0.620121 CTCCTGCCCTTCTTCCTCCT 60.620 60.000 0.00 0.00 0.00 3.69
977 1101 1.631071 CCCTCCTGCCCTTCTTCCTC 61.631 65.000 0.00 0.00 0.00 3.71
982 1106 0.045469 ATCTTCCCTCCTGCCCTTCT 59.955 55.000 0.00 0.00 0.00 2.85
989 1113 1.225704 GGTGCCATCTTCCCTCCTG 59.774 63.158 0.00 0.00 0.00 3.86
990 1114 2.370445 CGGTGCCATCTTCCCTCCT 61.370 63.158 0.00 0.00 0.00 3.69
991 1115 2.190578 CGGTGCCATCTTCCCTCC 59.809 66.667 0.00 0.00 0.00 4.30
992 1116 2.514824 GCGGTGCCATCTTCCCTC 60.515 66.667 0.00 0.00 0.00 4.30
1140 1264 3.112709 GCGTGAGGCGAACAGGTC 61.113 66.667 0.00 0.00 44.77 3.85
1178 1302 2.907910 ACTGAATCGACTGCAATTGC 57.092 45.000 23.69 23.69 42.50 3.56
1179 1303 3.725895 CGGAACTGAATCGACTGCAATTG 60.726 47.826 0.00 0.00 0.00 2.32
1180 1304 2.416547 CGGAACTGAATCGACTGCAATT 59.583 45.455 0.00 0.00 0.00 2.32
1181 1305 2.002586 CGGAACTGAATCGACTGCAAT 58.997 47.619 0.00 0.00 0.00 3.56
1182 1306 1.270094 ACGGAACTGAATCGACTGCAA 60.270 47.619 0.00 0.00 0.00 4.08
1183 1307 0.317160 ACGGAACTGAATCGACTGCA 59.683 50.000 0.00 0.00 0.00 4.41
1189 1355 4.028852 TCTATGACACGGAACTGAATCG 57.971 45.455 0.00 0.00 0.00 3.34
1227 1393 9.166173 TGAACTCTGATTGATTTACAACTATGG 57.834 33.333 0.00 0.00 41.52 2.74
1253 1419 8.883731 CGGAACTCTGATTGATTTACAACTATT 58.116 33.333 0.00 0.00 41.52 1.73
1293 1459 4.508461 TCCAACTGTGAATGAATGCAAG 57.492 40.909 0.00 0.00 0.00 4.01
1307 1473 4.142182 ACACTGGTTCACATTTTCCAACTG 60.142 41.667 0.00 0.00 0.00 3.16
1327 1493 1.070577 GCACATGACGACACAGAACAC 60.071 52.381 0.00 0.00 0.00 3.32
1364 1530 9.781834 GATCGATTAACATTTAACAACCATGAA 57.218 29.630 0.00 0.00 0.00 2.57
1365 1531 8.119845 CGATCGATTAACATTTAACAACCATGA 58.880 33.333 10.26 0.00 0.00 3.07
1366 1532 7.375808 CCGATCGATTAACATTTAACAACCATG 59.624 37.037 18.66 0.00 0.00 3.66
1367 1533 7.281324 TCCGATCGATTAACATTTAACAACCAT 59.719 33.333 18.66 0.00 0.00 3.55
1368 1534 6.594547 TCCGATCGATTAACATTTAACAACCA 59.405 34.615 18.66 0.00 0.00 3.67
1419 1585 2.618045 CGCCCAGGATCAACTAAACCTT 60.618 50.000 0.00 0.00 0.00 3.50
1427 1593 1.803289 GCTTTCGCCCAGGATCAAC 59.197 57.895 0.00 0.00 0.00 3.18
1566 1737 2.128507 AGATTCTCCCGGACCTCGC 61.129 63.158 0.73 0.00 37.59 5.03
1572 1743 1.306141 AGGTGCAGATTCTCCCGGA 60.306 57.895 0.73 0.00 0.00 5.14
1728 1899 4.398044 ACAAACTGATTTTTCAGACACCGT 59.602 37.500 9.82 0.00 39.99 4.83
1776 1947 6.528423 GTGTCAATACAAGCTCAGTACTGTAG 59.472 42.308 21.99 17.60 37.36 2.74
1779 1950 5.347093 CAGTGTCAATACAAGCTCAGTACTG 59.653 44.000 17.17 17.17 37.36 2.74
1785 1957 3.748048 GCTTCAGTGTCAATACAAGCTCA 59.252 43.478 8.27 0.00 37.36 4.26
1799 1973 8.768955 GGTATTATTCAGAATACTGCTTCAGTG 58.231 37.037 9.52 0.00 45.01 3.66
1810 1984 8.372459 ACGTGCCAATAGGTATTATTCAGAATA 58.628 33.333 0.00 0.00 37.19 1.75
1814 1988 5.758296 ACACGTGCCAATAGGTATTATTCAG 59.242 40.000 17.22 0.00 37.19 3.02
1820 1994 2.546778 CGACACGTGCCAATAGGTATT 58.453 47.619 17.22 0.00 37.19 1.89
1837 2013 3.554324 TGCATTATCCGTTAAAGAGCGAC 59.446 43.478 0.00 0.00 0.00 5.19
1848 2024 3.553096 GGATCGAGAAGTGCATTATCCGT 60.553 47.826 0.00 0.00 0.00 4.69
1850 2026 3.244215 TGGGATCGAGAAGTGCATTATCC 60.244 47.826 0.00 0.00 0.00 2.59
1863 2040 3.213506 TGCCAAATTATGTGGGATCGAG 58.786 45.455 3.28 0.00 36.58 4.04
1866 2043 7.415429 CCAAAAATTGCCAAATTATGTGGGATC 60.415 37.037 3.28 0.00 36.25 3.36
1867 2044 6.377712 CCAAAAATTGCCAAATTATGTGGGAT 59.622 34.615 3.28 0.00 36.25 3.85
1873 2050 7.326547 GCAAGAACCAAAAATTGCCAAATTATG 59.673 33.333 0.00 0.00 41.65 1.90
1874 2051 7.014038 TGCAAGAACCAAAAATTGCCAAATTAT 59.986 29.630 6.32 0.00 45.76 1.28
1884 2061 5.759763 CCTAGCTTTGCAAGAACCAAAAATT 59.240 36.000 0.00 0.00 32.37 1.82
1894 2071 2.636830 GATGAGCCTAGCTTTGCAAGA 58.363 47.619 0.00 0.00 39.88 3.02
1913 2090 6.457663 GCCAGTATTGCAAACATACATTACGA 60.458 38.462 1.71 0.00 31.28 3.43
1914 2091 5.681105 GCCAGTATTGCAAACATACATTACG 59.319 40.000 1.71 0.00 31.28 3.18
1936 2114 0.957888 GCAAGTGTTCTCCAGGAGCC 60.958 60.000 12.26 5.34 0.00 4.70
1944 2122 8.226448 GCTATAATATGATGTGCAAGTGTTCTC 58.774 37.037 0.00 0.00 0.00 2.87
1972 2150 6.477253 TGTACATTGCACTAATTACTCCCAA 58.523 36.000 0.00 0.00 0.00 4.12
2019 2197 6.212955 TCTAAAAATGTTAGCACACAAAGGC 58.787 36.000 0.00 0.00 35.03 4.35
2068 2246 3.002791 GAGACGAAATGCATCCTGACAA 58.997 45.455 0.00 0.00 0.00 3.18
2075 2253 2.076100 TGTGGTGAGACGAAATGCATC 58.924 47.619 0.00 0.00 0.00 3.91
2076 2254 2.079158 CTGTGGTGAGACGAAATGCAT 58.921 47.619 0.00 0.00 0.00 3.96
2078 2256 1.512926 ACTGTGGTGAGACGAAATGC 58.487 50.000 0.00 0.00 0.00 3.56
2079 2257 5.666969 TTAAACTGTGGTGAGACGAAATG 57.333 39.130 0.00 0.00 0.00 2.32
2080 2258 5.277154 CGTTTAAACTGTGGTGAGACGAAAT 60.277 40.000 16.01 0.00 0.00 2.17
2081 2259 4.033129 CGTTTAAACTGTGGTGAGACGAAA 59.967 41.667 16.01 0.00 0.00 3.46
2082 2260 3.552699 CGTTTAAACTGTGGTGAGACGAA 59.447 43.478 16.01 0.00 0.00 3.85
2084 2262 2.348218 GCGTTTAAACTGTGGTGAGACG 60.348 50.000 16.01 0.48 0.00 4.18
2085 2263 2.610374 TGCGTTTAAACTGTGGTGAGAC 59.390 45.455 16.01 0.00 0.00 3.36
2160 2388 0.914644 TCATAGCTGAGCAGGCCTTT 59.085 50.000 0.00 0.00 0.00 3.11
2247 2475 5.694910 CCAGCAACTCTCGTCTTTAAGTTTA 59.305 40.000 0.00 0.00 29.78 2.01
2249 2477 4.058817 CCAGCAACTCTCGTCTTTAAGTT 58.941 43.478 0.00 0.00 32.34 2.66
2253 2481 2.626266 TGACCAGCAACTCTCGTCTTTA 59.374 45.455 0.00 0.00 34.53 1.85
2259 2487 0.315251 TGTCTGACCAGCAACTCTCG 59.685 55.000 5.17 0.00 0.00 4.04
2266 2494 2.435805 AGAAGTCTTTGTCTGACCAGCA 59.564 45.455 5.17 0.00 35.21 4.41
2298 2526 9.482627 CTTTACTAAATAGCATCTCTAACCTGG 57.517 37.037 0.00 0.00 0.00 4.45
2299 2527 9.482627 CCTTTACTAAATAGCATCTCTAACCTG 57.517 37.037 0.00 0.00 0.00 4.00
2325 2553 5.004726 GCGTGCATAGTGATTTGGAAATTTC 59.995 40.000 9.83 9.83 0.00 2.17
2329 2557 2.159585 CGCGTGCATAGTGATTTGGAAA 60.160 45.455 0.00 0.00 0.00 3.13
2337 2565 0.319125 TTGTGACGCGTGCATAGTGA 60.319 50.000 20.70 0.00 0.00 3.41
2345 2573 0.725784 GCCAAGAATTGTGACGCGTG 60.726 55.000 20.70 0.00 46.99 5.34
2347 2575 0.453282 CTGCCAAGAATTGTGACGCG 60.453 55.000 3.53 3.53 46.99 6.01
2348 2576 0.109597 CCTGCCAAGAATTGTGACGC 60.110 55.000 0.00 0.00 46.99 5.19
2350 2578 0.961019 TGCCTGCCAAGAATTGTGAC 59.039 50.000 0.00 0.00 46.99 3.67
2360 2588 1.374947 GTACTCCTGTGCCTGCCAA 59.625 57.895 0.00 0.00 0.00 4.52
2362 2590 0.035056 ATTGTACTCCTGTGCCTGCC 60.035 55.000 0.00 0.00 0.00 4.85
2364 2592 4.520492 AGAAAAATTGTACTCCTGTGCCTG 59.480 41.667 0.00 0.00 0.00 4.85
2365 2593 4.520492 CAGAAAAATTGTACTCCTGTGCCT 59.480 41.667 0.00 0.00 0.00 4.75
2368 2596 6.391227 AACCAGAAAAATTGTACTCCTGTG 57.609 37.500 0.00 0.00 0.00 3.66
2369 2597 5.535030 GGAACCAGAAAAATTGTACTCCTGT 59.465 40.000 0.00 0.00 0.00 4.00
2370 2598 5.334879 CGGAACCAGAAAAATTGTACTCCTG 60.335 44.000 0.00 0.00 0.00 3.86
2371 2599 4.760204 CGGAACCAGAAAAATTGTACTCCT 59.240 41.667 0.00 0.00 0.00 3.69
2372 2600 4.517832 ACGGAACCAGAAAAATTGTACTCC 59.482 41.667 0.00 0.00 0.00 3.85
2373 2601 5.008316 ACACGGAACCAGAAAAATTGTACTC 59.992 40.000 0.00 0.00 0.00 2.59
2375 2603 5.177725 ACACGGAACCAGAAAAATTGTAC 57.822 39.130 0.00 0.00 0.00 2.90
2376 2604 5.838531 AACACGGAACCAGAAAAATTGTA 57.161 34.783 0.00 0.00 0.00 2.41
2379 2607 3.868661 GCAAACACGGAACCAGAAAAATT 59.131 39.130 0.00 0.00 0.00 1.82
2393 2646 2.535574 GCCTTTCAAAAGAGCAAACACG 59.464 45.455 4.06 0.00 38.28 4.49
2394 2647 3.306973 GTGCCTTTCAAAAGAGCAAACAC 59.693 43.478 15.49 6.60 40.91 3.32
2398 2651 3.384146 TCATGTGCCTTTCAAAAGAGCAA 59.616 39.130 15.49 9.64 40.91 3.91
2400 2653 3.005155 ACTCATGTGCCTTTCAAAAGAGC 59.995 43.478 4.06 6.55 38.28 4.09
2401 2654 4.843220 ACTCATGTGCCTTTCAAAAGAG 57.157 40.909 4.06 0.00 38.28 2.85
2402 2655 5.129634 TGTACTCATGTGCCTTTCAAAAGA 58.870 37.500 4.06 0.00 38.28 2.52
2403 2656 5.437289 TGTACTCATGTGCCTTTCAAAAG 57.563 39.130 0.00 0.00 35.79 2.27
2404 2657 5.359576 AGTTGTACTCATGTGCCTTTCAAAA 59.640 36.000 0.00 0.00 0.00 2.44
2406 2659 4.460263 AGTTGTACTCATGTGCCTTTCAA 58.540 39.130 0.00 0.00 0.00 2.69
2409 2662 6.770785 TCTTTAAGTTGTACTCATGTGCCTTT 59.229 34.615 0.00 0.00 0.00 3.11
2410 2663 6.296026 TCTTTAAGTTGTACTCATGTGCCTT 58.704 36.000 0.00 0.00 0.00 4.35
2411 2664 5.865085 TCTTTAAGTTGTACTCATGTGCCT 58.135 37.500 0.00 0.00 0.00 4.75
2412 2665 6.149474 ACATCTTTAAGTTGTACTCATGTGCC 59.851 38.462 6.87 0.00 0.00 5.01
2413 2666 7.133891 ACATCTTTAAGTTGTACTCATGTGC 57.866 36.000 6.87 0.00 0.00 4.57
2414 2667 9.424319 ACTACATCTTTAAGTTGTACTCATGTG 57.576 33.333 10.72 0.00 31.28 3.21
2415 2668 9.424319 CACTACATCTTTAAGTTGTACTCATGT 57.576 33.333 10.72 5.80 31.28 3.21
2416 2669 9.424319 ACACTACATCTTTAAGTTGTACTCATG 57.576 33.333 10.72 9.52 31.28 3.07
2417 2670 9.998106 AACACTACATCTTTAAGTTGTACTCAT 57.002 29.630 10.72 0.00 31.28 2.90
2418 2671 9.826574 AAACACTACATCTTTAAGTTGTACTCA 57.173 29.630 10.72 0.00 31.28 3.41
2420 2673 8.557029 GCAAACACTACATCTTTAAGTTGTACT 58.443 33.333 10.72 2.03 31.28 2.73
2421 2674 8.557029 AGCAAACACTACATCTTTAAGTTGTAC 58.443 33.333 10.72 2.25 31.28 2.90
2422 2675 8.671384 AGCAAACACTACATCTTTAAGTTGTA 57.329 30.769 13.26 13.26 31.28 2.41
2423 2676 7.499232 AGAGCAAACACTACATCTTTAAGTTGT 59.501 33.333 12.48 12.48 33.22 3.32
2424 2677 7.865707 AGAGCAAACACTACATCTTTAAGTTG 58.134 34.615 1.87 1.87 0.00 3.16
2425 2678 8.451908 AAGAGCAAACACTACATCTTTAAGTT 57.548 30.769 0.00 0.00 0.00 2.66
2426 2679 8.451908 AAAGAGCAAACACTACATCTTTAAGT 57.548 30.769 0.00 0.00 35.75 2.24
2427 2680 9.173939 CAAAAGAGCAAACACTACATCTTTAAG 57.826 33.333 0.00 0.00 36.31 1.85
2428 2681 8.898761 TCAAAAGAGCAAACACTACATCTTTAA 58.101 29.630 0.00 0.00 36.31 1.52
2429 2682 8.445275 TCAAAAGAGCAAACACTACATCTTTA 57.555 30.769 0.00 0.00 36.31 1.85
2430 2683 7.333528 TCAAAAGAGCAAACACTACATCTTT 57.666 32.000 0.00 0.00 38.32 2.52
2431 2684 6.942532 TCAAAAGAGCAAACACTACATCTT 57.057 33.333 0.00 0.00 0.00 2.40
2432 2685 6.942532 TTCAAAAGAGCAAACACTACATCT 57.057 33.333 0.00 0.00 0.00 2.90
2433 2686 6.638468 CCTTTCAAAAGAGCAAACACTACATC 59.362 38.462 4.06 0.00 38.28 3.06
2434 2687 6.507023 CCTTTCAAAAGAGCAAACACTACAT 58.493 36.000 4.06 0.00 38.28 2.29
2435 2688 5.678616 GCCTTTCAAAAGAGCAAACACTACA 60.679 40.000 4.06 0.00 38.28 2.74
2436 2689 4.740205 GCCTTTCAAAAGAGCAAACACTAC 59.260 41.667 4.06 0.00 38.28 2.73
2437 2690 4.644685 AGCCTTTCAAAAGAGCAAACACTA 59.355 37.500 14.28 0.00 38.28 2.74
2438 2691 3.448660 AGCCTTTCAAAAGAGCAAACACT 59.551 39.130 14.28 0.00 38.28 3.55
2439 2692 3.785486 AGCCTTTCAAAAGAGCAAACAC 58.215 40.909 14.28 0.00 38.28 3.32
2440 2693 4.183101 CAAGCCTTTCAAAAGAGCAAACA 58.817 39.130 14.28 0.00 38.28 2.83
2441 2694 4.183865 ACAAGCCTTTCAAAAGAGCAAAC 58.816 39.130 14.28 0.00 38.28 2.93
2442 2695 4.470334 ACAAGCCTTTCAAAAGAGCAAA 57.530 36.364 14.28 0.00 38.28 3.68
2443 2696 4.202111 GGTACAAGCCTTTCAAAAGAGCAA 60.202 41.667 14.28 0.83 38.28 3.91
2444 2697 3.317993 GGTACAAGCCTTTCAAAAGAGCA 59.682 43.478 14.28 0.00 38.28 4.26
2445 2698 3.305403 GGGTACAAGCCTTTCAAAAGAGC 60.305 47.826 4.06 6.07 38.28 4.09
2446 2699 3.058224 CGGGTACAAGCCTTTCAAAAGAG 60.058 47.826 4.06 0.00 38.28 2.85
2447 2700 2.882137 CGGGTACAAGCCTTTCAAAAGA 59.118 45.455 4.06 0.00 38.28 2.52
2448 2701 2.621526 ACGGGTACAAGCCTTTCAAAAG 59.378 45.455 0.00 0.00 32.48 2.27
2449 2702 2.657143 ACGGGTACAAGCCTTTCAAAA 58.343 42.857 0.00 0.00 32.48 2.44
2450 2703 2.351706 ACGGGTACAAGCCTTTCAAA 57.648 45.000 0.00 0.00 32.48 2.69
2451 2704 3.140623 GTTACGGGTACAAGCCTTTCAA 58.859 45.455 0.00 0.00 32.48 2.69
2452 2705 2.104451 TGTTACGGGTACAAGCCTTTCA 59.896 45.455 0.00 0.00 32.48 2.69
2453 2706 2.769893 TGTTACGGGTACAAGCCTTTC 58.230 47.619 0.00 0.00 32.48 2.62
2454 2707 2.934886 TGTTACGGGTACAAGCCTTT 57.065 45.000 0.00 0.00 32.48 3.11
2455 2708 2.934886 TTGTTACGGGTACAAGCCTT 57.065 45.000 0.00 0.00 32.48 4.35
2456 2709 2.934886 TTTGTTACGGGTACAAGCCT 57.065 45.000 0.00 0.00 36.89 4.58
2457 2710 3.140623 TCTTTTGTTACGGGTACAAGCC 58.859 45.455 0.00 0.00 36.89 4.35
2458 2711 4.816786 TTCTTTTGTTACGGGTACAAGC 57.183 40.909 0.00 0.00 36.89 4.01
2459 2712 6.367686 ACTTTCTTTTGTTACGGGTACAAG 57.632 37.500 0.00 0.00 36.89 3.16
2460 2713 6.756299 AACTTTCTTTTGTTACGGGTACAA 57.244 33.333 0.00 0.00 33.92 2.41
2461 2714 6.756299 AAACTTTCTTTTGTTACGGGTACA 57.244 33.333 0.00 0.00 0.00 2.90
2462 2715 7.475015 AGAAAACTTTCTTTTGTTACGGGTAC 58.525 34.615 0.00 0.00 44.70 3.34
2463 2716 7.628769 AGAAAACTTTCTTTTGTTACGGGTA 57.371 32.000 0.00 0.00 44.70 3.69
2464 2717 6.519679 AGAAAACTTTCTTTTGTTACGGGT 57.480 33.333 0.00 0.00 44.70 5.28
2533 2786 2.040278 AGAATACCAGTCCTGCAAGCAA 59.960 45.455 0.00 0.00 0.00 3.91
2569 2822 0.609957 CCAAGGATGCCTGTTCAGCA 60.610 55.000 0.00 0.00 45.94 4.41
2647 2900 1.073763 ACAGTAGGCTGCAACAATGGA 59.926 47.619 5.14 0.00 46.30 3.41
2721 2974 6.320672 CAGGCAATAAAAGAGAACAGATGGAT 59.679 38.462 0.00 0.00 0.00 3.41
2927 3180 8.439964 TCAATGTGATTGATCCCATCTATCTA 57.560 34.615 8.68 1.12 43.84 1.98
2976 3229 4.012319 CACTGATGGAAATTGAAGAGCG 57.988 45.455 0.00 0.00 0.00 5.03
3015 3268 2.643551 AGATAATGACCGGTGCCAAAG 58.356 47.619 14.63 0.00 0.00 2.77
3103 3358 5.627499 AGCAGCTATCGTTGAAATTTGAA 57.373 34.783 0.00 0.00 0.00 2.69
3261 3525 1.136529 CATTGTGTGCTTCTGTCGTCG 60.137 52.381 0.00 0.00 0.00 5.12
3316 3580 1.131504 TCACTTCAACAACACGCCAAC 59.868 47.619 0.00 0.00 0.00 3.77
3335 3599 9.167311 TCAGGACTAATCATTTTCTAAAAGCTC 57.833 33.333 0.00 0.00 0.00 4.09
3395 3659 4.580167 ACAGCAAGAATAAGACAGCACAAA 59.420 37.500 0.00 0.00 0.00 2.83
3430 3706 6.878389 TCAGTACAATCATGCAGACACATTTA 59.122 34.615 0.00 0.00 0.00 1.40
3439 3715 4.201753 CGGAGTTTCAGTACAATCATGCAG 60.202 45.833 0.00 0.00 0.00 4.41
3444 3720 3.394674 TGCGGAGTTTCAGTACAATCA 57.605 42.857 0.00 0.00 0.00 2.57
3447 3723 3.185594 CGATTTGCGGAGTTTCAGTACAA 59.814 43.478 0.00 0.00 36.03 2.41
3462 3746 3.058570 TGTGACACAATGTACCGATTTGC 60.059 43.478 5.62 0.00 0.00 3.68
3590 3874 2.052237 GCGCAAATGTATCGCCCG 60.052 61.111 0.30 0.00 42.71 6.13
3594 3878 2.354763 TTCGGCGCGCAAATGTATCG 62.355 55.000 34.42 23.45 0.00 2.92
3633 3917 1.483595 TTCCTCAGCAGGTCCACCAG 61.484 60.000 0.00 0.00 41.28 4.00
3642 3926 1.833630 TGGGTACATCTTCCTCAGCAG 59.166 52.381 0.00 0.00 0.00 4.24
3691 3975 0.590230 GACCGAGCGAACGAGAGATG 60.590 60.000 0.00 0.00 35.09 2.90
3692 3976 1.025113 TGACCGAGCGAACGAGAGAT 61.025 55.000 0.00 0.00 35.09 2.75
3697 3986 1.081641 GTTCTGACCGAGCGAACGA 60.082 57.895 0.00 0.00 35.09 3.85
3702 3991 0.318699 TGACAAGTTCTGACCGAGCG 60.319 55.000 0.00 0.00 0.00 5.03
3718 4007 0.664761 ATTGTGCAGTGCAGTGTGAC 59.335 50.000 20.42 18.26 40.08 3.67
3730 4019 1.105457 GGCTGCAGGATAATTGTGCA 58.895 50.000 17.12 2.03 44.80 4.57
3731 4020 1.066605 CTGGCTGCAGGATAATTGTGC 59.933 52.381 17.12 0.00 37.73 4.57
3732 4021 2.372264 ACTGGCTGCAGGATAATTGTG 58.628 47.619 17.12 0.00 0.00 3.33
3733 4022 2.814805 ACTGGCTGCAGGATAATTGT 57.185 45.000 17.12 0.00 0.00 2.71
3734 4023 3.004106 GCTTACTGGCTGCAGGATAATTG 59.996 47.826 17.12 0.00 0.00 2.32
3735 4024 3.217626 GCTTACTGGCTGCAGGATAATT 58.782 45.455 17.12 0.00 0.00 1.40
3736 4025 2.487986 GGCTTACTGGCTGCAGGATAAT 60.488 50.000 17.12 0.00 38.32 1.28
3738 4027 0.469917 GGCTTACTGGCTGCAGGATA 59.530 55.000 17.12 0.00 38.32 2.59
3739 4028 1.225704 GGCTTACTGGCTGCAGGAT 59.774 57.895 17.12 0.00 38.32 3.24
3740 4029 2.189191 CTGGCTTACTGGCTGCAGGA 62.189 60.000 17.12 0.00 42.34 3.86
3742 4031 0.607489 AACTGGCTTACTGGCTGCAG 60.607 55.000 10.11 10.11 42.47 4.41
3743 4032 0.606401 GAACTGGCTTACTGGCTGCA 60.606 55.000 0.50 0.00 42.47 4.41
3744 4033 0.606401 TGAACTGGCTTACTGGCTGC 60.606 55.000 0.00 0.00 42.47 5.25
3745 4034 1.741706 CATGAACTGGCTTACTGGCTG 59.258 52.381 0.00 0.00 43.88 4.85
3746 4035 1.630369 TCATGAACTGGCTTACTGGCT 59.370 47.619 0.00 0.00 42.34 4.75
3747 4036 2.113860 TCATGAACTGGCTTACTGGC 57.886 50.000 0.00 0.00 42.18 4.85
3748 4037 3.875727 CAGATCATGAACTGGCTTACTGG 59.124 47.826 21.89 0.00 0.00 4.00
3749 4038 4.763073 TCAGATCATGAACTGGCTTACTG 58.237 43.478 27.00 12.76 34.02 2.74
3750 4039 5.188555 TCTTCAGATCATGAACTGGCTTACT 59.811 40.000 27.00 0.00 43.09 2.24
3751 4040 5.423015 TCTTCAGATCATGAACTGGCTTAC 58.577 41.667 27.00 1.04 43.09 2.34
3752 4041 5.682234 TCTTCAGATCATGAACTGGCTTA 57.318 39.130 27.00 9.92 43.09 3.09
3753 4042 4.564782 TCTTCAGATCATGAACTGGCTT 57.435 40.909 27.00 0.00 43.09 4.35
3821 4111 2.467826 GCTTCTGCGATGACAGCCC 61.468 63.158 0.00 0.00 37.59 5.19
3822 4112 1.449246 AGCTTCTGCGATGACAGCC 60.449 57.895 0.00 0.00 45.42 4.85
3858 4148 4.168291 CCTCCAGCTTCCTCGGCC 62.168 72.222 0.00 0.00 0.00 6.13
4006 4296 8.194769 AGAAGTTCGACCATAAAACAAACAAAT 58.805 29.630 0.00 0.00 0.00 2.32
4038 4328 1.443872 CCGTCCAGCGACACTACAC 60.444 63.158 0.00 0.00 44.77 2.90
4071 4361 2.033299 AGCAAGTTGTTCGACCATTGTG 59.967 45.455 4.48 0.00 0.00 3.33
4115 4439 2.508526 GGGGCAACAGATATAAGCAGG 58.491 52.381 0.00 0.00 39.74 4.85
4116 4440 2.107204 AGGGGGCAACAGATATAAGCAG 59.893 50.000 0.00 0.00 39.74 4.24
4117 4441 2.135189 AGGGGGCAACAGATATAAGCA 58.865 47.619 0.00 0.00 39.74 3.91
4118 4442 2.158608 ACAGGGGGCAACAGATATAAGC 60.159 50.000 0.00 0.00 39.74 3.09
4119 4443 3.392616 AGACAGGGGGCAACAGATATAAG 59.607 47.826 0.00 0.00 39.74 1.73
4120 4444 3.136443 CAGACAGGGGGCAACAGATATAA 59.864 47.826 0.00 0.00 39.74 0.98
4122 4446 1.492176 CAGACAGGGGGCAACAGATAT 59.508 52.381 0.00 0.00 39.74 1.63
4129 4492 1.768684 GACAGTCAGACAGGGGGCAA 61.769 60.000 2.66 0.00 0.00 4.52
4130 4493 2.122413 ACAGTCAGACAGGGGGCA 60.122 61.111 2.66 0.00 0.00 5.36
4148 5254 4.588528 TGGAGGGAAATCTTGTTCCTTTTG 59.411 41.667 4.10 0.00 45.56 2.44
4210 5577 3.386543 GTCAGGCTGACGGCAATAT 57.613 52.632 29.91 0.00 44.01 1.28
4231 5598 4.845580 CTGTAGGGCTGCCTGGCG 62.846 72.222 19.68 10.05 42.84 5.69
4233 5600 2.037620 CTAGCTGTAGGGCTGCCTGG 62.038 65.000 19.68 5.68 43.01 4.45
4242 5609 8.177119 AGTGATTCTTCTAATCTAGCTGTAGG 57.823 38.462 0.00 0.00 0.00 3.18
4301 5935 3.197766 CCACAGCCTGAGAATAACCTACA 59.802 47.826 0.00 0.00 0.00 2.74
4304 5938 1.561542 CCCACAGCCTGAGAATAACCT 59.438 52.381 0.00 0.00 0.00 3.50
4334 5968 9.816354 TCTGTGAAATTAATCGTGAATCTATGA 57.184 29.630 0.00 0.00 0.00 2.15
4335 5969 9.855361 GTCTGTGAAATTAATCGTGAATCTATG 57.145 33.333 0.00 0.00 0.00 2.23
4338 6412 7.387673 TGTGTCTGTGAAATTAATCGTGAATCT 59.612 33.333 0.00 0.00 0.00 2.40
4341 6415 6.293190 GGTGTGTCTGTGAAATTAATCGTGAA 60.293 38.462 0.00 0.00 0.00 3.18
4344 6418 5.060506 TGGTGTGTCTGTGAAATTAATCGT 58.939 37.500 0.00 0.00 0.00 3.73
4345 6419 5.605564 TGGTGTGTCTGTGAAATTAATCG 57.394 39.130 0.00 0.00 0.00 3.34
4352 6426 2.364632 CCTGTTGGTGTGTCTGTGAAA 58.635 47.619 0.00 0.00 0.00 2.69
4364 6438 1.140134 ATACTGGCACCCCTGTTGGT 61.140 55.000 0.00 0.00 42.52 3.67
4365 6439 0.039618 AATACTGGCACCCCTGTTGG 59.960 55.000 0.00 0.00 42.52 3.77
4366 6440 1.176527 CAATACTGGCACCCCTGTTG 58.823 55.000 0.00 0.00 42.52 3.33
4388 6462 6.073711 TGCACAATAAGAACATGCAAACAATG 60.074 34.615 0.00 0.00 43.00 2.82
4390 6464 5.354767 TGCACAATAAGAACATGCAAACAA 58.645 33.333 0.00 0.00 43.00 2.83
4416 6490 0.974383 CGGTTCCAGTAACACTCCCT 59.026 55.000 0.00 0.00 40.08 4.20
4417 6491 0.672711 GCGGTTCCAGTAACACTCCC 60.673 60.000 0.00 0.00 40.08 4.30
4418 6492 0.034337 TGCGGTTCCAGTAACACTCC 59.966 55.000 0.00 0.00 40.08 3.85
4421 6495 2.414138 GTGTATGCGGTTCCAGTAACAC 59.586 50.000 0.00 0.00 40.08 3.32
4422 6496 2.690786 GTGTATGCGGTTCCAGTAACA 58.309 47.619 0.00 0.00 40.08 2.41
4423 6497 1.657094 CGTGTATGCGGTTCCAGTAAC 59.343 52.381 0.00 0.00 37.36 2.50
4440 6534 6.989796 TTTGAAAATCATGAATCACACGTG 57.010 33.333 15.48 15.48 0.00 4.49
4475 6569 7.293018 CGATGTTACCTTTTTGTAACCTGTAC 58.707 38.462 10.55 0.00 46.41 2.90
4480 6639 4.216902 AGCCGATGTTACCTTTTTGTAACC 59.783 41.667 10.55 0.00 46.41 2.85
4486 6645 6.584185 ATGTTAAGCCGATGTTACCTTTTT 57.416 33.333 0.00 0.00 0.00 1.94
4493 6652 6.052360 TGCTCAATATGTTAAGCCGATGTTA 58.948 36.000 0.00 0.00 33.79 2.41
4517 6676 9.412460 TGAATCCTTAATAATTCTGCAAGTCAT 57.588 29.630 9.90 0.00 33.86 3.06
4540 6699 3.485463 ACGGAGTTCTCCAAATGTGAA 57.515 42.857 17.48 0.00 37.78 3.18
4552 6711 2.924290 GTCATGCAAGTCTACGGAGTTC 59.076 50.000 0.00 0.00 37.78 3.01
4594 6753 9.725019 GATTTATTCATTTTGGGGAACTTCTTT 57.275 29.630 0.00 0.00 0.00 2.52
4595 6754 8.879227 TGATTTATTCATTTTGGGGAACTTCTT 58.121 29.630 0.00 0.00 0.00 2.52
4596 6755 8.434589 TGATTTATTCATTTTGGGGAACTTCT 57.565 30.769 0.00 0.00 0.00 2.85
4626 6788 4.397103 GGGGTGTACTACTTTATTTGCCAC 59.603 45.833 0.00 0.00 0.00 5.01
4639 6801 1.298953 ACTAGGTCGGGGGTGTACTA 58.701 55.000 0.00 0.00 0.00 1.82
4644 6806 7.121382 TCTTATATTATACTAGGTCGGGGGTG 58.879 42.308 0.00 0.00 0.00 4.61
4645 6807 7.289326 TCTTATATTATACTAGGTCGGGGGT 57.711 40.000 0.00 0.00 0.00 4.95
4649 6811 9.517609 GCAACATCTTATATTATACTAGGTCGG 57.482 37.037 0.00 0.00 0.00 4.79
4720 6891 4.431378 TCCACCCGTCCCATAATATATGT 58.569 43.478 0.00 0.00 0.00 2.29
4722 6893 4.695606 ACTCCACCCGTCCCATAATATAT 58.304 43.478 0.00 0.00 0.00 0.86
4738 6909 2.826725 AGTGCCTAGACTGTTACTCCAC 59.173 50.000 0.00 0.00 0.00 4.02
4767 6940 5.289917 TCAACATAATGTTACGGCAGTTG 57.710 39.130 0.00 0.00 38.77 3.16
4768 6941 5.163663 CCATCAACATAATGTTACGGCAGTT 60.164 40.000 0.00 0.00 38.77 3.16
4769 6942 4.335315 CCATCAACATAATGTTACGGCAGT 59.665 41.667 0.00 0.00 38.77 4.40
4770 6943 4.574421 TCCATCAACATAATGTTACGGCAG 59.426 41.667 0.00 0.00 38.77 4.85
4774 6947 6.017934 CCCTTCTCCATCAACATAATGTTACG 60.018 42.308 0.00 0.00 38.77 3.18
4777 6950 5.203528 CCCCTTCTCCATCAACATAATGTT 58.796 41.667 0.00 0.00 42.08 2.71
4787 6960 2.002977 CCCAGCCCCTTCTCCATCA 61.003 63.158 0.00 0.00 0.00 3.07
4830 7004 1.181786 CCACTCTTCTTCTCCGCTCT 58.818 55.000 0.00 0.00 0.00 4.09
4834 7008 1.490574 ATCCCCACTCTTCTTCTCCG 58.509 55.000 0.00 0.00 0.00 4.63
4891 7065 9.295825 TCTGTATCCTTATGTGTTTGAACATTT 57.704 29.630 0.00 0.00 41.09 2.32
4892 7066 8.862325 TCTGTATCCTTATGTGTTTGAACATT 57.138 30.769 0.00 0.00 41.09 2.71
4893 7067 8.896744 CATCTGTATCCTTATGTGTTTGAACAT 58.103 33.333 0.00 0.00 43.21 2.71
4894 7068 8.100164 TCATCTGTATCCTTATGTGTTTGAACA 58.900 33.333 0.00 0.00 36.38 3.18
4895 7069 8.492673 TCATCTGTATCCTTATGTGTTTGAAC 57.507 34.615 0.00 0.00 0.00 3.18
4899 7073 9.645059 CGATATCATCTGTATCCTTATGTGTTT 57.355 33.333 3.12 0.00 0.00 2.83
4900 7074 8.253810 CCGATATCATCTGTATCCTTATGTGTT 58.746 37.037 3.12 0.00 0.00 3.32
4901 7075 7.147828 CCCGATATCATCTGTATCCTTATGTGT 60.148 40.741 3.12 0.00 0.00 3.72
4902 7076 7.205992 CCCGATATCATCTGTATCCTTATGTG 58.794 42.308 3.12 0.00 0.00 3.21
4903 7077 6.183360 GCCCGATATCATCTGTATCCTTATGT 60.183 42.308 3.12 0.00 0.00 2.29
4904 7078 6.183360 TGCCCGATATCATCTGTATCCTTATG 60.183 42.308 3.12 0.00 0.00 1.90
4905 7079 5.899547 TGCCCGATATCATCTGTATCCTTAT 59.100 40.000 3.12 0.00 0.00 1.73
4906 7080 5.269189 TGCCCGATATCATCTGTATCCTTA 58.731 41.667 3.12 0.00 0.00 2.69
4907 7081 4.096681 TGCCCGATATCATCTGTATCCTT 58.903 43.478 3.12 0.00 0.00 3.36
4908 7082 3.703556 CTGCCCGATATCATCTGTATCCT 59.296 47.826 3.12 0.00 0.00 3.24
4909 7083 3.701542 TCTGCCCGATATCATCTGTATCC 59.298 47.826 3.12 0.00 0.00 2.59
4910 7084 4.642437 TCTCTGCCCGATATCATCTGTATC 59.358 45.833 3.12 0.00 0.00 2.24
4911 7085 4.604156 TCTCTGCCCGATATCATCTGTAT 58.396 43.478 3.12 0.00 0.00 2.29
4912 7086 4.034285 TCTCTGCCCGATATCATCTGTA 57.966 45.455 3.12 0.00 0.00 2.74
4913 7087 2.881734 TCTCTGCCCGATATCATCTGT 58.118 47.619 3.12 0.00 0.00 3.41
4914 7088 3.257873 ACTTCTCTGCCCGATATCATCTG 59.742 47.826 3.12 0.00 0.00 2.90
4915 7089 3.505386 ACTTCTCTGCCCGATATCATCT 58.495 45.455 3.12 0.00 0.00 2.90
4916 7090 3.951775 ACTTCTCTGCCCGATATCATC 57.048 47.619 3.12 0.00 0.00 2.92
4917 7091 4.322349 GCTTACTTCTCTGCCCGATATCAT 60.322 45.833 3.12 0.00 0.00 2.45
4918 7092 3.005897 GCTTACTTCTCTGCCCGATATCA 59.994 47.826 3.12 0.00 0.00 2.15
4919 7093 3.580731 GCTTACTTCTCTGCCCGATATC 58.419 50.000 0.00 0.00 0.00 1.63
4920 7094 2.300437 GGCTTACTTCTCTGCCCGATAT 59.700 50.000 0.00 0.00 39.49 1.63
4921 7095 1.687123 GGCTTACTTCTCTGCCCGATA 59.313 52.381 0.00 0.00 39.49 2.92
4922 7096 0.466124 GGCTTACTTCTCTGCCCGAT 59.534 55.000 0.00 0.00 39.49 4.18
4923 7097 0.902984 TGGCTTACTTCTCTGCCCGA 60.903 55.000 0.00 0.00 44.32 5.14
4924 7098 0.741221 GTGGCTTACTTCTCTGCCCG 60.741 60.000 0.00 0.00 44.32 6.13
4925 7099 0.324943 TGTGGCTTACTTCTCTGCCC 59.675 55.000 0.00 0.00 44.32 5.36
4926 7100 1.270839 TGTGTGGCTTACTTCTCTGCC 60.271 52.381 0.00 0.00 45.10 4.85
4927 7101 2.169832 TGTGTGGCTTACTTCTCTGC 57.830 50.000 0.00 0.00 0.00 4.26
4928 7102 3.005554 CCATGTGTGGCTTACTTCTCTG 58.994 50.000 0.00 0.00 39.01 3.35
4929 7103 3.340814 CCATGTGTGGCTTACTTCTCT 57.659 47.619 0.00 0.00 39.01 3.10
4953 7127 2.364317 TGCTTCTCTCCCTCCCGG 60.364 66.667 0.00 0.00 0.00 5.73
4954 7128 3.087666 GCTGCTTCTCTCCCTCCCG 62.088 68.421 0.00 0.00 0.00 5.14
4955 7129 2.741055 GGCTGCTTCTCTCCCTCCC 61.741 68.421 0.00 0.00 0.00 4.30
4956 7130 2.907236 GGCTGCTTCTCTCCCTCC 59.093 66.667 0.00 0.00 0.00 4.30
4957 7131 2.498726 CGGCTGCTTCTCTCCCTC 59.501 66.667 0.00 0.00 0.00 4.30
4958 7132 3.780173 GCGGCTGCTTCTCTCCCT 61.780 66.667 11.21 0.00 38.39 4.20
4959 7133 4.847444 GGCGGCTGCTTCTCTCCC 62.847 72.222 18.85 0.00 42.25 4.30
4960 7134 1.961180 TAAGGCGGCTGCTTCTCTCC 61.961 60.000 18.85 0.00 42.25 3.71
4961 7135 0.529555 CTAAGGCGGCTGCTTCTCTC 60.530 60.000 18.85 0.00 42.25 3.20
4962 7136 1.519719 CTAAGGCGGCTGCTTCTCT 59.480 57.895 18.85 2.36 42.25 3.10
4963 7137 2.176926 GCTAAGGCGGCTGCTTCTC 61.177 63.158 18.85 0.00 42.25 2.87
4964 7138 1.330655 TAGCTAAGGCGGCTGCTTCT 61.331 55.000 25.42 16.21 44.37 2.85
4965 7139 0.462047 TTAGCTAAGGCGGCTGCTTC 60.462 55.000 25.42 10.29 44.37 3.86
4966 7140 0.462759 CTTAGCTAAGGCGGCTGCTT 60.463 55.000 25.42 6.98 44.37 3.91
4967 7141 1.144936 CTTAGCTAAGGCGGCTGCT 59.855 57.895 24.06 24.06 44.37 4.24
4968 7142 3.724494 CTTAGCTAAGGCGGCTGC 58.276 61.111 23.48 13.33 44.37 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.