Multiple sequence alignment - TraesCS5D01G276800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G276800 chr5D 100.000 4145 0 0 1 4145 379252399 379248255 0.000000e+00 7655
1 TraesCS5D01G276800 chr5D 83.493 939 102 24 2245 3147 379227990 379227069 0.000000e+00 826
2 TraesCS5D01G276800 chr5D 86.992 492 45 13 907 1383 379229835 379229348 1.700000e-148 536
3 TraesCS5D01G276800 chr5D 88.154 363 34 6 1390 1750 379229000 379228645 1.380000e-114 424
4 TraesCS5D01G276800 chr5D 84.352 409 46 12 989 1383 379220102 379219698 6.500000e-103 385
5 TraesCS5D01G276800 chr5D 81.345 461 62 11 2635 3094 379218500 379218063 1.830000e-93 353
6 TraesCS5D01G276800 chr5D 83.250 400 44 17 988 1383 379133847 379133467 3.070000e-91 346
7 TraesCS5D01G276800 chr5D 79.093 507 75 19 1704 2191 379228640 379228146 1.860000e-83 320
8 TraesCS5D01G276800 chr5D 90.000 230 22 1 1448 1677 379219461 379219233 3.130000e-76 296
9 TraesCS5D01G276800 chr5D 91.791 134 7 2 992 1121 379387321 379387188 2.550000e-42 183
10 TraesCS5D01G276800 chr5B 90.314 1435 70 20 810 2184 455148010 455146585 0.000000e+00 1816
11 TraesCS5D01G276800 chr5B 92.374 1167 62 9 2265 3405 455146551 455145386 0.000000e+00 1637
12 TraesCS5D01G276800 chr5B 87.001 777 62 12 1 742 455161679 455160907 0.000000e+00 839
13 TraesCS5D01G276800 chr5B 87.552 723 77 6 2434 3147 454901219 454900501 0.000000e+00 824
14 TraesCS5D01G276800 chr5B 90.994 322 29 0 1062 1383 454903088 454902767 6.360000e-118 435
15 TraesCS5D01G276800 chr5B 89.235 353 28 7 1402 1750 454902425 454902079 2.290000e-117 433
16 TraesCS5D01G276800 chr5B 83.084 467 51 13 2631 3094 454895581 454895140 2.320000e-107 399
17 TraesCS5D01G276800 chr5B 83.771 419 53 13 973 1378 454897254 454896838 2.340000e-102 383
18 TraesCS5D01G276800 chr5B 80.040 506 72 17 1704 2191 454902074 454901580 8.530000e-92 348
19 TraesCS5D01G276800 chr5B 82.020 406 52 14 988 1383 454695550 454695156 4.000000e-85 326
20 TraesCS5D01G276800 chr5B 81.679 131 18 5 4019 4145 87769807 87769935 2.040000e-18 104
21 TraesCS5D01G276800 chr1A 95.690 1021 39 5 2129 3148 586718974 586717958 0.000000e+00 1637
22 TraesCS5D01G276800 chr1A 91.825 893 43 15 813 1682 586720695 586719810 0.000000e+00 1218
23 TraesCS5D01G276800 chr1A 92.079 404 15 4 1689 2077 586719649 586719248 1.680000e-153 553
24 TraesCS5D01G276800 chr1A 93.391 348 22 1 3161 3508 586717771 586717425 7.950000e-142 514
25 TraesCS5D01G276800 chr5A 85.167 600 65 10 2549 3147 479403982 479403406 9.920000e-166 593
26 TraesCS5D01G276800 chr5A 86.694 496 45 13 905 1383 479408844 479408353 7.890000e-147 531
27 TraesCS5D01G276800 chr5A 88.301 359 35 5 1393 1750 479408005 479407653 1.380000e-114 424
28 TraesCS5D01G276800 chr5A 83.568 426 51 15 973 1383 479397673 479397252 8.410000e-102 381
29 TraesCS5D01G276800 chr5A 81.174 494 62 17 2635 3120 479395959 479395489 6.550000e-98 368
30 TraesCS5D01G276800 chr5A 82.368 397 51 14 988 1378 479239841 479239458 1.110000e-85 327
31 TraesCS5D01G276800 chr5A 90.000 230 22 1 1448 1677 479397000 479396772 3.130000e-76 296
32 TraesCS5D01G276800 chr5A 82.833 233 34 4 407 634 352359253 352359484 1.950000e-48 204
33 TraesCS5D01G276800 chr2A 83.008 359 46 10 368 718 65657017 65656666 1.120000e-80 311
34 TraesCS5D01G276800 chr4A 80.469 384 56 12 347 715 636988636 636989015 4.080000e-70 276
35 TraesCS5D01G276800 chr4D 82.555 321 45 8 320 631 355854924 355855242 5.280000e-69 272
36 TraesCS5D01G276800 chr7A 79.459 370 58 15 356 717 628984411 628984770 3.200000e-61 246
37 TraesCS5D01G276800 chr3B 81.633 294 41 9 319 607 441483972 441483687 8.960000e-57 231
38 TraesCS5D01G276800 chr7D 79.501 361 44 14 326 679 95832690 95832353 3.220000e-56 230
39 TraesCS5D01G276800 chr2D 82.213 253 34 6 358 605 64177496 64177250 1.510000e-49 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G276800 chr5D 379248255 379252399 4144 True 7655.000000 7655 100.000000 1 4145 1 chr5D.!!$R2 4144
1 TraesCS5D01G276800 chr5D 379227069 379229835 2766 True 526.500000 826 84.433000 907 3147 4 chr5D.!!$R5 2240
2 TraesCS5D01G276800 chr5D 379218063 379220102 2039 True 344.666667 385 85.232333 989 3094 3 chr5D.!!$R4 2105
3 TraesCS5D01G276800 chr5B 455145386 455148010 2624 True 1726.500000 1816 91.344000 810 3405 2 chr5B.!!$R4 2595
4 TraesCS5D01G276800 chr5B 455160907 455161679 772 True 839.000000 839 87.001000 1 742 1 chr5B.!!$R2 741
5 TraesCS5D01G276800 chr5B 454895140 454903088 7948 True 470.333333 824 85.779333 973 3147 6 chr5B.!!$R3 2174
6 TraesCS5D01G276800 chr1A 586717425 586720695 3270 True 980.500000 1637 93.246250 813 3508 4 chr1A.!!$R1 2695
7 TraesCS5D01G276800 chr5A 479403406 479408844 5438 True 516.000000 593 86.720667 905 3147 3 chr5A.!!$R3 2242
8 TraesCS5D01G276800 chr5A 479395489 479397673 2184 True 348.333333 381 84.914000 973 3120 3 chr5A.!!$R2 2147

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
798 838 0.668535 GGGAACAGAACACAGTTGGC 59.331 55.0 0.0 0.0 0.0 4.52 F
1593 2055 1.236616 CCACCGCTGCTGTTCATTCA 61.237 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1710 2332 2.339400 CGTTGCGACTGAATTCAATTGC 59.661 45.455 19.87 19.87 0.00 3.56 R
3514 7608 0.179026 CACATCCTATGCTGCTGGCT 60.179 55.000 0.00 0.00 42.39 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.751259 CAATGCAAGTAGTGGTGATGCT 59.249 45.455 0.00 0.00 37.86 3.79
89 90 4.127907 GGCTAACTACCTACAAAGATGGC 58.872 47.826 0.00 0.00 0.00 4.40
144 145 9.029368 TCAAACCACATCCAATACAAATATGAA 57.971 29.630 0.00 0.00 0.00 2.57
146 147 7.953005 ACCACATCCAATACAAATATGAACA 57.047 32.000 0.00 0.00 0.00 3.18
171 172 5.624159 AGATTTCAGTGTTCATGAGTTGGA 58.376 37.500 0.00 0.00 0.00 3.53
174 175 6.713762 TTTCAGTGTTCATGAGTTGGATTT 57.286 33.333 0.00 0.00 0.00 2.17
176 177 5.375773 TCAGTGTTCATGAGTTGGATTTGA 58.624 37.500 0.00 0.00 0.00 2.69
177 178 6.005823 TCAGTGTTCATGAGTTGGATTTGAT 58.994 36.000 0.00 0.00 0.00 2.57
187 188 5.009911 TGAGTTGGATTTGATTGGAACACAG 59.990 40.000 0.00 0.00 39.29 3.66
207 208 2.242196 AGGATATTGGTGGTGACTTGGG 59.758 50.000 0.00 0.00 0.00 4.12
267 272 4.803452 TGGAAGAGGAGGAACAACAAAAT 58.197 39.130 0.00 0.00 0.00 1.82
282 287 8.934023 AACAACAAAATAGAGGTTTAGGATCA 57.066 30.769 0.00 0.00 0.00 2.92
295 300 7.331791 AGGTTTAGGATCAACTTATGTCTGAC 58.668 38.462 0.00 0.00 0.00 3.51
303 308 8.467598 GGATCAACTTATGTCTGACACTAGTAA 58.532 37.037 20.37 12.07 28.75 2.24
307 312 7.534723 ACTTATGTCTGACACTAGTAAACCA 57.465 36.000 19.28 0.00 0.00 3.67
346 360 2.735126 CGTTTTGGCTATTGGGTGCATC 60.735 50.000 0.00 0.00 0.00 3.91
435 450 1.660167 TGCTAGATGCTCATGTGTGC 58.340 50.000 0.00 0.40 43.37 4.57
446 461 2.317609 ATGTGTGCGAAGTCCGTGC 61.318 57.895 0.00 0.00 41.15 5.34
455 470 2.350964 GCGAAGTCCGTGCCAAATTTTA 60.351 45.455 0.00 0.00 41.15 1.52
459 474 3.161866 AGTCCGTGCCAAATTTTATGGT 58.838 40.909 0.00 0.00 40.23 3.55
480 495 5.001232 GGTGTTTGGACATTTCAGTAGCTA 58.999 41.667 0.00 0.00 38.23 3.32
485 500 8.100791 TGTTTGGACATTTCAGTAGCTATTAGT 58.899 33.333 0.00 0.00 0.00 2.24
512 527 8.584063 AAAAAGACTAGTTTTGGGACTGTAAA 57.416 30.769 0.00 0.00 29.93 2.01
541 556 9.730420 AGTTTATTGTTCATGTACTGTTTTGAC 57.270 29.630 4.01 0.00 0.00 3.18
542 557 8.964150 GTTTATTGTTCATGTACTGTTTTGACC 58.036 33.333 4.01 0.00 0.00 4.02
543 558 6.707440 ATTGTTCATGTACTGTTTTGACCA 57.293 33.333 4.01 0.00 0.00 4.02
545 560 6.707440 TGTTCATGTACTGTTTTGACCAAT 57.293 33.333 4.01 0.00 0.00 3.16
548 563 7.490725 TGTTCATGTACTGTTTTGACCAATTTG 59.509 33.333 4.01 0.00 0.00 2.32
569 599 1.830279 TTTTGCCATGAGCTCCTCAG 58.170 50.000 12.15 0.00 44.08 3.35
574 604 1.134159 GCCATGAGCTCCTCAGATGTT 60.134 52.381 12.15 0.00 44.08 2.71
605 635 4.487948 CTGAAATTTGGCACGAACATCAT 58.512 39.130 0.00 0.00 0.00 2.45
624 654 5.022282 TCATGTATTGGAGCATCTTCGAA 57.978 39.130 0.00 0.00 33.73 3.71
697 737 2.147150 CATGAGATGCAGATGAGCCTG 58.853 52.381 0.00 0.00 37.23 4.85
698 738 1.492764 TGAGATGCAGATGAGCCTGA 58.507 50.000 0.00 0.00 36.29 3.86
703 743 1.221293 GCAGATGAGCCTGAGCACT 59.779 57.895 0.00 0.00 43.56 4.40
707 747 1.838715 AGATGAGCCTGAGCACTGAAT 59.161 47.619 0.00 0.00 43.56 2.57
716 756 4.023365 GCCTGAGCACTGAATTGAATATCC 60.023 45.833 0.00 0.00 39.53 2.59
735 775 3.417101 TCCGGATGTGTGTGCTTTATTT 58.583 40.909 0.00 0.00 0.00 1.40
736 776 4.580868 TCCGGATGTGTGTGCTTTATTTA 58.419 39.130 0.00 0.00 0.00 1.40
742 782 6.974622 GGATGTGTGTGCTTTATTTATTGGAG 59.025 38.462 0.00 0.00 0.00 3.86
743 783 6.892658 TGTGTGTGCTTTATTTATTGGAGT 57.107 33.333 0.00 0.00 0.00 3.85
744 784 6.676950 TGTGTGTGCTTTATTTATTGGAGTG 58.323 36.000 0.00 0.00 0.00 3.51
745 785 6.092748 GTGTGTGCTTTATTTATTGGAGTGG 58.907 40.000 0.00 0.00 0.00 4.00
746 786 5.184864 TGTGTGCTTTATTTATTGGAGTGGG 59.815 40.000 0.00 0.00 0.00 4.61
747 787 4.709397 TGTGCTTTATTTATTGGAGTGGGG 59.291 41.667 0.00 0.00 0.00 4.96
748 788 4.709886 GTGCTTTATTTATTGGAGTGGGGT 59.290 41.667 0.00 0.00 0.00 4.95
749 789 5.889289 GTGCTTTATTTATTGGAGTGGGGTA 59.111 40.000 0.00 0.00 0.00 3.69
750 790 5.889289 TGCTTTATTTATTGGAGTGGGGTAC 59.111 40.000 0.00 0.00 0.00 3.34
751 791 6.127101 GCTTTATTTATTGGAGTGGGGTACT 58.873 40.000 0.00 0.00 44.02 2.73
762 802 2.897436 GTGGGGTACTCCACGATTAAC 58.103 52.381 28.74 4.75 46.31 2.01
763 803 2.234414 GTGGGGTACTCCACGATTAACA 59.766 50.000 28.74 0.00 46.31 2.41
764 804 2.234414 TGGGGTACTCCACGATTAACAC 59.766 50.000 11.53 0.00 40.71 3.32
765 805 2.234414 GGGGTACTCCACGATTAACACA 59.766 50.000 6.99 0.00 37.22 3.72
766 806 3.306919 GGGGTACTCCACGATTAACACAA 60.307 47.826 6.99 0.00 37.22 3.33
767 807 4.510571 GGGTACTCCACGATTAACACAAT 58.489 43.478 0.00 0.00 35.00 2.71
768 808 4.939439 GGGTACTCCACGATTAACACAATT 59.061 41.667 0.00 0.00 35.00 2.32
769 809 5.413523 GGGTACTCCACGATTAACACAATTT 59.586 40.000 0.00 0.00 35.00 1.82
770 810 6.402875 GGGTACTCCACGATTAACACAATTTC 60.403 42.308 0.00 0.00 35.00 2.17
771 811 6.148150 GGTACTCCACGATTAACACAATTTCA 59.852 38.462 0.00 0.00 0.00 2.69
772 812 6.817765 ACTCCACGATTAACACAATTTCAT 57.182 33.333 0.00 0.00 0.00 2.57
773 813 7.915293 ACTCCACGATTAACACAATTTCATA 57.085 32.000 0.00 0.00 0.00 2.15
774 814 8.330466 ACTCCACGATTAACACAATTTCATAA 57.670 30.769 0.00 0.00 0.00 1.90
775 815 8.956426 ACTCCACGATTAACACAATTTCATAAT 58.044 29.630 0.00 0.00 0.00 1.28
776 816 9.787532 CTCCACGATTAACACAATTTCATAATT 57.212 29.630 0.00 0.00 34.29 1.40
777 817 9.781834 TCCACGATTAACACAATTTCATAATTC 57.218 29.630 0.00 0.00 31.63 2.17
778 818 9.787532 CCACGATTAACACAATTTCATAATTCT 57.212 29.630 0.00 0.00 31.63 2.40
780 820 9.787532 ACGATTAACACAATTTCATAATTCTGG 57.212 29.630 0.00 0.00 31.63 3.86
781 821 9.236691 CGATTAACACAATTTCATAATTCTGGG 57.763 33.333 0.00 0.00 31.63 4.45
784 824 9.921637 TTAACACAATTTCATAATTCTGGGAAC 57.078 29.630 0.00 0.00 31.63 3.62
785 825 7.537596 ACACAATTTCATAATTCTGGGAACA 57.462 32.000 0.00 0.00 31.63 3.18
797 837 2.051334 TGGGAACAGAACACAGTTGG 57.949 50.000 0.00 0.00 35.01 3.77
798 838 0.668535 GGGAACAGAACACAGTTGGC 59.331 55.000 0.00 0.00 0.00 4.52
799 839 1.388547 GGAACAGAACACAGTTGGCA 58.611 50.000 0.00 0.00 0.00 4.92
800 840 1.956477 GGAACAGAACACAGTTGGCAT 59.044 47.619 0.00 0.00 0.00 4.40
801 841 2.362077 GGAACAGAACACAGTTGGCATT 59.638 45.455 0.00 0.00 0.00 3.56
802 842 3.374745 GAACAGAACACAGTTGGCATTG 58.625 45.455 0.00 0.00 0.00 2.82
803 843 2.653726 ACAGAACACAGTTGGCATTGA 58.346 42.857 6.53 0.00 0.00 2.57
804 844 3.225104 ACAGAACACAGTTGGCATTGAT 58.775 40.909 6.53 0.00 0.00 2.57
805 845 3.005050 ACAGAACACAGTTGGCATTGATG 59.995 43.478 6.53 4.33 0.00 3.07
806 846 3.253921 CAGAACACAGTTGGCATTGATGA 59.746 43.478 6.53 0.00 0.00 2.92
807 847 3.890756 AGAACACAGTTGGCATTGATGAA 59.109 39.130 6.53 0.00 0.00 2.57
808 848 3.648339 ACACAGTTGGCATTGATGAAC 57.352 42.857 6.53 0.00 0.00 3.18
809 849 2.957680 ACACAGTTGGCATTGATGAACA 59.042 40.909 6.53 0.00 0.00 3.18
810 850 3.384146 ACACAGTTGGCATTGATGAACAA 59.616 39.130 6.53 0.00 42.95 2.83
811 851 3.737266 CACAGTTGGCATTGATGAACAAC 59.263 43.478 17.05 17.05 42.37 3.32
812 852 3.384146 ACAGTTGGCATTGATGAACAACA 59.616 39.130 22.31 0.00 43.41 3.33
813 853 3.985279 CAGTTGGCATTGATGAACAACAG 59.015 43.478 22.31 15.78 43.41 3.16
814 854 3.890756 AGTTGGCATTGATGAACAACAGA 59.109 39.130 22.31 0.00 43.41 3.41
815 855 4.022589 AGTTGGCATTGATGAACAACAGAG 60.023 41.667 22.31 0.00 43.41 3.35
816 856 2.229543 TGGCATTGATGAACAACAGAGC 59.770 45.455 0.00 0.00 41.52 4.09
957 1003 3.665190 GAGTGGGTGGAGAAACTGTTAG 58.335 50.000 0.00 0.00 0.00 2.34
958 1004 2.152016 GTGGGTGGAGAAACTGTTAGC 58.848 52.381 0.00 0.00 0.00 3.09
964 1023 1.337823 GGAGAAACTGTTAGCCGAGCA 60.338 52.381 0.00 0.00 0.00 4.26
1378 1488 1.313812 CGTCGACCCTGAGGCTAGTT 61.314 60.000 10.58 0.00 36.11 2.24
1383 1493 1.623811 GACCCTGAGGCTAGTTCACAA 59.376 52.381 0.00 0.00 36.11 3.33
1384 1494 2.038557 GACCCTGAGGCTAGTTCACAAA 59.961 50.000 0.00 0.00 36.11 2.83
1385 1495 2.441750 ACCCTGAGGCTAGTTCACAAAA 59.558 45.455 0.00 0.00 36.11 2.44
1466 1928 6.104146 TGGTCTGTTACTAATGTTGTGCTA 57.896 37.500 0.00 0.00 0.00 3.49
1593 2055 1.236616 CCACCGCTGCTGTTCATTCA 61.237 55.000 0.00 0.00 0.00 2.57
1671 2133 4.363991 AATATGCATGGAGAAGGAGGTC 57.636 45.455 10.16 0.00 0.00 3.85
1685 2307 7.256225 GGAGAAGGAGGTCAGTAAAGTTAGAAA 60.256 40.741 0.00 0.00 0.00 2.52
1686 2308 8.208575 AGAAGGAGGTCAGTAAAGTTAGAAAT 57.791 34.615 0.00 0.00 0.00 2.17
1687 2309 8.661345 AGAAGGAGGTCAGTAAAGTTAGAAATT 58.339 33.333 0.00 0.00 0.00 1.82
1710 2332 7.867305 TTACTAGAACTGTGAGGTGATAGAG 57.133 40.000 0.00 0.00 0.00 2.43
1715 2337 4.833478 ACTGTGAGGTGATAGAGCAATT 57.167 40.909 0.00 0.00 0.00 2.32
1900 5299 6.978080 TGAGTTCAAACCTTTACAATTTCTGC 59.022 34.615 0.00 0.00 0.00 4.26
1909 5308 0.541296 ACAATTTCTGCTGGCAGGCT 60.541 50.000 17.64 5.01 43.75 4.58
1917 5316 0.623194 TGCTGGCAGGCTTGGTATAA 59.377 50.000 17.64 0.00 0.00 0.98
2092 5491 4.082463 GGTGCCCTCGTTATTTCATTTTCA 60.082 41.667 0.00 0.00 0.00 2.69
2192 5859 4.876679 GGCTCTCTTGGTAATGTAGGAAAC 59.123 45.833 0.00 0.00 0.00 2.78
2259 6060 5.266788 TGAATCCAATTTCTTCCATGAGCT 58.733 37.500 0.00 0.00 0.00 4.09
2799 6667 2.238144 TGCTGGAGCTGCTAAAGAAGAT 59.762 45.455 6.82 0.00 42.66 2.40
2833 6701 7.235804 ACTACAACTATGTAAAATGGTGGGTT 58.764 34.615 0.00 0.00 41.36 4.11
2847 6715 4.906618 TGGTGGGTTTCTTCTCTTATCAC 58.093 43.478 0.00 0.00 0.00 3.06
2869 6738 6.146510 TCACGTGTTCCTTGTATGTATCAAAC 59.853 38.462 16.51 0.00 0.00 2.93
2888 6757 2.925724 ACGACACATTTTCCCTGAACA 58.074 42.857 0.00 0.00 0.00 3.18
2977 6846 2.436087 AAACTCTCCTGTCACGCCGG 62.436 60.000 0.00 0.00 0.00 6.13
3066 6935 4.097437 AGCATCGAATACTACCGAAAGACA 59.903 41.667 0.00 0.00 38.36 3.41
3171 7227 4.631813 CCCAGTGCTTTCTACATAAGTCAC 59.368 45.833 0.00 0.00 33.65 3.67
3271 7329 0.390998 GACCAGAGAGTGAAGCTGCC 60.391 60.000 0.00 0.00 0.00 4.85
3346 7427 0.387929 TGTGTTGTGTCGAGGTCTCC 59.612 55.000 0.00 0.00 0.00 3.71
3386 7480 7.942341 AGATGTTGTTAAGAACATTTACCCTCA 59.058 33.333 26.32 0.78 44.78 3.86
3387 7481 7.883391 TGTTGTTAAGAACATTTACCCTCAA 57.117 32.000 13.74 0.00 41.79 3.02
3407 7501 8.030106 CCCTCAATCGATAATAAAGGAGTAGAC 58.970 40.741 0.00 0.00 0.00 2.59
3409 7503 8.707796 TCAATCGATAATAAAGGAGTAGACCT 57.292 34.615 0.00 0.00 42.69 3.85
3514 7608 3.449227 CTGCCGACTGCCGAGGTA 61.449 66.667 0.00 0.00 41.76 3.08
3517 7611 4.208686 CCGACTGCCGAGGTAGCC 62.209 72.222 7.15 0.00 41.76 3.93
3518 7612 3.449227 CGACTGCCGAGGTAGCCA 61.449 66.667 7.15 0.00 41.76 4.75
3532 7626 4.894201 GCCAGCAGCATAGGATGT 57.106 55.556 0.00 0.00 42.97 3.06
3533 7627 2.328235 GCCAGCAGCATAGGATGTG 58.672 57.895 0.00 0.00 42.97 3.21
3534 7628 0.465097 GCCAGCAGCATAGGATGTGT 60.465 55.000 0.00 0.00 42.97 3.72
3536 7630 1.134310 CCAGCAGCATAGGATGTGTGA 60.134 52.381 0.00 0.00 31.62 3.58
3537 7631 1.938577 CAGCAGCATAGGATGTGTGAC 59.061 52.381 0.00 0.00 31.62 3.67
3538 7632 1.556451 AGCAGCATAGGATGTGTGACA 59.444 47.619 0.00 0.00 31.62 3.58
3539 7633 1.667724 GCAGCATAGGATGTGTGACAC 59.332 52.381 9.14 9.14 31.62 3.67
3540 7634 2.283298 CAGCATAGGATGTGTGACACC 58.717 52.381 13.85 0.00 32.73 4.16
3542 7636 2.009774 GCATAGGATGTGTGACACCAC 58.990 52.381 13.85 6.96 43.46 4.16
3543 7637 2.270923 CATAGGATGTGTGACACCACG 58.729 52.381 13.85 0.00 46.06 4.94
3552 7646 0.949105 GTGACACCACGCACTTAGGG 60.949 60.000 0.00 0.00 33.10 3.53
3553 7647 2.032071 ACACCACGCACTTAGGGC 59.968 61.111 0.00 0.00 0.00 5.19
3555 7649 1.377202 CACCACGCACTTAGGGCAT 60.377 57.895 7.41 0.00 0.00 4.40
3556 7650 1.078426 ACCACGCACTTAGGGCATC 60.078 57.895 7.41 0.00 0.00 3.91
3558 7652 0.392998 CCACGCACTTAGGGCATCTT 60.393 55.000 7.41 0.00 0.00 2.40
3559 7653 1.453155 CACGCACTTAGGGCATCTTT 58.547 50.000 7.41 0.00 0.00 2.52
3561 7655 2.084546 ACGCACTTAGGGCATCTTTTC 58.915 47.619 7.41 0.00 0.00 2.29
3562 7656 2.290323 ACGCACTTAGGGCATCTTTTCT 60.290 45.455 7.41 0.00 0.00 2.52
3563 7657 3.055385 ACGCACTTAGGGCATCTTTTCTA 60.055 43.478 7.41 0.00 0.00 2.10
3566 7660 5.186198 GCACTTAGGGCATCTTTTCTAGAA 58.814 41.667 0.00 0.00 36.22 2.10
3567 7661 5.825151 GCACTTAGGGCATCTTTTCTAGAAT 59.175 40.000 5.89 0.00 36.22 2.40
3568 7662 6.992715 GCACTTAGGGCATCTTTTCTAGAATA 59.007 38.462 5.89 0.22 36.22 1.75
3569 7663 7.041712 GCACTTAGGGCATCTTTTCTAGAATAC 60.042 40.741 5.89 0.00 36.22 1.89
3570 7664 7.442666 CACTTAGGGCATCTTTTCTAGAATACC 59.557 40.741 5.89 0.00 36.22 2.73
3571 7665 5.975988 AGGGCATCTTTTCTAGAATACCA 57.024 39.130 5.89 0.00 36.22 3.25
3572 7666 6.521527 AGGGCATCTTTTCTAGAATACCAT 57.478 37.500 5.89 0.00 36.22 3.55
3573 7667 6.302269 AGGGCATCTTTTCTAGAATACCATG 58.698 40.000 5.89 7.72 36.22 3.66
3574 7668 6.064717 GGGCATCTTTTCTAGAATACCATGT 58.935 40.000 5.89 0.00 36.22 3.21
3576 7670 6.767902 GGCATCTTTTCTAGAATACCATGTCA 59.232 38.462 5.89 0.00 36.22 3.58
3577 7671 7.283127 GGCATCTTTTCTAGAATACCATGTCAA 59.717 37.037 5.89 0.00 36.22 3.18
3638 7732 5.852282 ATACCATGGTATTCAAGTTTGCC 57.148 39.130 28.50 0.00 38.02 4.52
3639 7733 3.505386 ACCATGGTATTCAAGTTTGCCA 58.495 40.909 18.10 0.00 0.00 4.92
3640 7734 3.900601 ACCATGGTATTCAAGTTTGCCAA 59.099 39.130 18.10 0.00 0.00 4.52
3641 7735 4.244862 CCATGGTATTCAAGTTTGCCAAC 58.755 43.478 2.57 0.00 0.00 3.77
3644 7738 5.543507 TGGTATTCAAGTTTGCCAACATT 57.456 34.783 3.22 0.00 35.05 2.71
3645 7739 5.923204 TGGTATTCAAGTTTGCCAACATTT 58.077 33.333 3.22 0.00 35.05 2.32
3646 7740 6.352516 TGGTATTCAAGTTTGCCAACATTTT 58.647 32.000 3.22 0.00 35.05 1.82
3647 7741 6.825721 TGGTATTCAAGTTTGCCAACATTTTT 59.174 30.769 3.22 0.00 35.05 1.94
3672 7766 9.658799 TTTTGGAAATTGTGAACATCTTTTACA 57.341 25.926 0.00 0.00 0.00 2.41
3673 7767 9.658799 TTTGGAAATTGTGAACATCTTTTACAA 57.341 25.926 0.00 0.00 35.93 2.41
3674 7768 9.658799 TTGGAAATTGTGAACATCTTTTACAAA 57.341 25.926 8.23 0.00 35.23 2.83
3675 7769 9.829507 TGGAAATTGTGAACATCTTTTACAAAT 57.170 25.926 0.00 0.00 35.23 2.32
3680 7774 8.484641 TTGTGAACATCTTTTACAAATTTGCA 57.515 26.923 18.12 2.00 0.00 4.08
3681 7775 8.484641 TGTGAACATCTTTTACAAATTTGCAA 57.515 26.923 18.12 8.97 0.00 4.08
3683 7777 9.209297 GTGAACATCTTTTACAAATTTGCAAAC 57.791 29.630 15.41 5.06 0.00 2.93
3685 7779 9.934190 GAACATCTTTTACAAATTTGCAAACAT 57.066 25.926 15.41 9.28 0.00 2.71
3712 7806 8.710918 TTTTTGAAATTGCGAGCATATTTTTG 57.289 26.923 14.46 0.00 0.00 2.44
3713 7807 7.418840 TTTGAAATTGCGAGCATATTTTTGT 57.581 28.000 14.46 0.38 0.00 2.83
3714 7808 8.526218 TTTGAAATTGCGAGCATATTTTTGTA 57.474 26.923 14.46 0.00 0.00 2.41
3715 7809 8.526218 TTGAAATTGCGAGCATATTTTTGTAA 57.474 26.923 14.46 8.74 0.00 2.41
3716 7810 7.948137 TGAAATTGCGAGCATATTTTTGTAAC 58.052 30.769 14.46 6.42 0.00 2.50
3718 7812 7.740519 AATTGCGAGCATATTTTTGTAACTC 57.259 32.000 0.00 0.00 0.00 3.01
3721 7815 6.314018 TGCGAGCATATTTTTGTAACTCTTG 58.686 36.000 0.00 0.00 0.00 3.02
3722 7816 6.148645 TGCGAGCATATTTTTGTAACTCTTGA 59.851 34.615 0.00 0.00 0.00 3.02
3723 7817 7.021196 GCGAGCATATTTTTGTAACTCTTGAA 58.979 34.615 0.00 0.00 0.00 2.69
3724 7818 7.698130 GCGAGCATATTTTTGTAACTCTTGAAT 59.302 33.333 0.00 0.00 0.00 2.57
3770 8087 6.384258 TTTTGAACGATGGACATTTTCTGA 57.616 33.333 0.00 0.00 0.00 3.27
3771 8088 6.384258 TTTGAACGATGGACATTTTCTGAA 57.616 33.333 0.00 0.00 0.00 3.02
3774 8091 6.980593 TGAACGATGGACATTTTCTGAATTT 58.019 32.000 0.00 0.00 0.00 1.82
3776 8093 7.381948 TGAACGATGGACATTTTCTGAATTTTG 59.618 33.333 0.00 0.00 0.00 2.44
3779 8096 6.862608 CGATGGACATTTTCTGAATTTTGTGA 59.137 34.615 5.47 0.00 0.00 3.58
3780 8097 7.381948 CGATGGACATTTTCTGAATTTTGTGAA 59.618 33.333 5.47 0.00 0.00 3.18
3781 8098 7.769272 TGGACATTTTCTGAATTTTGTGAAC 57.231 32.000 5.47 0.00 0.00 3.18
3783 8100 7.277539 TGGACATTTTCTGAATTTTGTGAACAC 59.722 33.333 5.47 0.00 0.00 3.32
3787 8104 8.667463 CATTTTCTGAATTTTGTGAACACCTTT 58.333 29.630 2.46 0.00 0.00 3.11
3790 8107 6.929625 TCTGAATTTTGTGAACACCTTTTGA 58.070 32.000 2.46 0.00 0.00 2.69
3793 8110 8.558973 TGAATTTTGTGAACACCTTTTGAAAT 57.441 26.923 2.46 0.00 0.00 2.17
3796 8113 7.969536 TTTTGTGAACACCTTTTGAAATTCA 57.030 28.000 2.46 0.00 0.00 2.57
3799 8116 5.106118 TGTGAACACCTTTTGAAATTCACGA 60.106 36.000 13.43 4.32 45.64 4.35
3803 8120 7.547370 TGAACACCTTTTGAAATTCACGATTTT 59.453 29.630 0.00 0.00 38.06 1.82
3807 8124 8.174422 CACCTTTTGAAATTCACGATTTTGTTT 58.826 29.630 0.00 0.00 38.06 2.83
3808 8125 8.726068 ACCTTTTGAAATTCACGATTTTGTTTT 58.274 25.926 0.00 0.00 38.06 2.43
3809 8126 8.997960 CCTTTTGAAATTCACGATTTTGTTTTG 58.002 29.630 0.00 0.00 38.06 2.44
3810 8127 9.540431 CTTTTGAAATTCACGATTTTGTTTTGT 57.460 25.926 0.00 0.00 38.06 2.83
3811 8128 9.884465 TTTTGAAATTCACGATTTTGTTTTGTT 57.116 22.222 0.00 0.00 38.06 2.83
3812 8129 9.884465 TTTGAAATTCACGATTTTGTTTTGTTT 57.116 22.222 0.00 0.00 38.06 2.83
3813 8130 9.884465 TTGAAATTCACGATTTTGTTTTGTTTT 57.116 22.222 0.00 0.00 38.06 2.43
3814 8131 9.884465 TGAAATTCACGATTTTGTTTTGTTTTT 57.116 22.222 0.00 0.00 38.06 1.94
3850 8167 8.442632 TTTTTACATGCATGACCATTTTTCAA 57.557 26.923 32.75 3.08 0.00 2.69
3852 8169 8.618702 TTTACATGCATGACCATTTTTCAAAT 57.381 26.923 32.75 7.76 0.00 2.32
3854 8171 7.136289 ACATGCATGACCATTTTTCAAATTC 57.864 32.000 32.75 0.00 0.00 2.17
3857 8174 5.701750 TGCATGACCATTTTTCAAATTCCTG 59.298 36.000 0.00 0.00 0.00 3.86
3860 8177 7.571798 GCATGACCATTTTTCAAATTCCTGAAC 60.572 37.037 0.00 0.00 35.07 3.18
3861 8178 6.882656 TGACCATTTTTCAAATTCCTGAACA 58.117 32.000 0.00 0.00 35.07 3.18
3862 8179 7.334090 TGACCATTTTTCAAATTCCTGAACAA 58.666 30.769 0.00 0.00 35.07 2.83
3863 8180 7.992033 TGACCATTTTTCAAATTCCTGAACAAT 59.008 29.630 0.44 0.44 36.57 2.71
3864 8181 8.382030 ACCATTTTTCAAATTCCTGAACAATC 57.618 30.769 2.62 0.00 34.84 2.67
3865 8182 8.212995 ACCATTTTTCAAATTCCTGAACAATCT 58.787 29.630 2.62 0.00 34.84 2.40
3866 8183 8.715088 CCATTTTTCAAATTCCTGAACAATCTC 58.285 33.333 2.62 0.00 34.84 2.75
3868 8185 8.876275 TTTTTCAAATTCCTGAACAATCTCTG 57.124 30.769 0.00 0.00 35.07 3.35
3869 8186 7.822161 TTTCAAATTCCTGAACAATCTCTGA 57.178 32.000 0.00 0.00 35.07 3.27
3871 8188 8.413309 TTCAAATTCCTGAACAATCTCTGAAT 57.587 30.769 0.00 0.00 30.31 2.57
3872 8189 8.048534 TCAAATTCCTGAACAATCTCTGAATC 57.951 34.615 0.00 0.00 0.00 2.52
3873 8190 6.674694 AATTCCTGAACAATCTCTGAATCG 57.325 37.500 0.00 0.00 0.00 3.34
3874 8191 5.405935 TTCCTGAACAATCTCTGAATCGA 57.594 39.130 0.00 0.00 0.00 3.59
3876 8193 5.354767 TCCTGAACAATCTCTGAATCGATG 58.645 41.667 0.00 0.00 0.00 3.84
3877 8194 5.127682 TCCTGAACAATCTCTGAATCGATGA 59.872 40.000 0.00 0.00 0.00 2.92
3878 8195 5.814188 CCTGAACAATCTCTGAATCGATGAA 59.186 40.000 0.00 0.00 0.00 2.57
3879 8196 6.238049 CCTGAACAATCTCTGAATCGATGAAC 60.238 42.308 0.00 0.00 0.00 3.18
3880 8197 6.401394 TGAACAATCTCTGAATCGATGAACT 58.599 36.000 0.00 0.00 0.00 3.01
3881 8198 7.547227 TGAACAATCTCTGAATCGATGAACTA 58.453 34.615 0.00 0.00 0.00 2.24
3882 8199 7.489435 TGAACAATCTCTGAATCGATGAACTAC 59.511 37.037 0.00 0.00 0.00 2.73
3883 8200 7.106439 ACAATCTCTGAATCGATGAACTACT 57.894 36.000 0.00 0.00 0.00 2.57
3884 8201 7.551585 ACAATCTCTGAATCGATGAACTACTT 58.448 34.615 0.00 0.00 0.00 2.24
3885 8202 8.037758 ACAATCTCTGAATCGATGAACTACTTT 58.962 33.333 0.00 0.00 0.00 2.66
3886 8203 8.877779 CAATCTCTGAATCGATGAACTACTTTT 58.122 33.333 0.00 0.00 0.00 2.27
3887 8204 7.818493 TCTCTGAATCGATGAACTACTTTTG 57.182 36.000 0.00 0.00 0.00 2.44
3888 8205 7.602753 TCTCTGAATCGATGAACTACTTTTGA 58.397 34.615 0.00 0.00 0.00 2.69
3889 8206 8.088365 TCTCTGAATCGATGAACTACTTTTGAA 58.912 33.333 0.00 0.00 0.00 2.69
3890 8207 8.601845 TCTGAATCGATGAACTACTTTTGAAA 57.398 30.769 0.00 0.00 0.00 2.69
3891 8208 9.219603 TCTGAATCGATGAACTACTTTTGAAAT 57.780 29.630 0.00 0.00 0.00 2.17
3892 8209 9.831737 CTGAATCGATGAACTACTTTTGAAATT 57.168 29.630 0.00 0.00 0.00 1.82
3895 8212 8.970691 ATCGATGAACTACTTTTGAAATTTGG 57.029 30.769 0.00 0.00 0.00 3.28
3896 8213 7.367285 TCGATGAACTACTTTTGAAATTTGGG 58.633 34.615 0.00 0.00 0.00 4.12
3897 8214 7.229707 TCGATGAACTACTTTTGAAATTTGGGA 59.770 33.333 0.00 0.00 0.00 4.37
3898 8215 7.865385 CGATGAACTACTTTTGAAATTTGGGAA 59.135 33.333 0.00 0.00 0.00 3.97
3899 8216 8.887036 ATGAACTACTTTTGAAATTTGGGAAC 57.113 30.769 0.00 0.00 0.00 3.62
3900 8217 7.841956 TGAACTACTTTTGAAATTTGGGAACA 58.158 30.769 0.00 0.00 39.83 3.18
3916 8233 4.509600 TGGGAACAATTTTGAATTTCACGC 59.490 37.500 0.00 0.00 37.44 5.34
3917 8234 4.509600 GGGAACAATTTTGAATTTCACGCA 59.490 37.500 0.00 0.00 0.00 5.24
3918 8235 5.431309 GGAACAATTTTGAATTTCACGCAC 58.569 37.500 0.00 0.00 0.00 5.34
3919 8236 5.006165 GGAACAATTTTGAATTTCACGCACA 59.994 36.000 0.00 0.00 0.00 4.57
3920 8237 6.292811 GGAACAATTTTGAATTTCACGCACAT 60.293 34.615 0.00 0.00 0.00 3.21
3921 8238 6.601741 ACAATTTTGAATTTCACGCACATT 57.398 29.167 0.00 0.00 0.00 2.71
3922 8239 7.014092 ACAATTTTGAATTTCACGCACATTT 57.986 28.000 0.00 0.00 0.00 2.32
3923 8240 7.470900 ACAATTTTGAATTTCACGCACATTTT 58.529 26.923 0.00 0.00 0.00 1.82
3924 8241 7.967303 ACAATTTTGAATTTCACGCACATTTTT 59.033 25.926 0.00 0.00 0.00 1.94
3972 8289 9.953697 AAAAATCATCAATGTTTTGTGAATTGG 57.046 25.926 0.99 0.00 31.97 3.16
3973 8290 8.680039 AAATCATCAATGTTTTGTGAATTGGT 57.320 26.923 0.00 0.00 34.32 3.67
3974 8291 7.661127 ATCATCAATGTTTTGTGAATTGGTG 57.339 32.000 2.22 2.22 41.64 4.17
3975 8292 6.814043 TCATCAATGTTTTGTGAATTGGTGA 58.186 32.000 6.50 6.50 44.89 4.02
3976 8293 7.270779 TCATCAATGTTTTGTGAATTGGTGAA 58.729 30.769 7.84 0.00 44.40 3.18
3977 8294 6.900568 TCAATGTTTTGTGAATTGGTGAAC 57.099 33.333 0.00 0.00 34.32 3.18
3978 8295 6.401394 TCAATGTTTTGTGAATTGGTGAACA 58.599 32.000 0.00 0.00 34.32 3.18
3979 8296 7.046652 TCAATGTTTTGTGAATTGGTGAACAT 58.953 30.769 0.00 0.00 37.72 2.71
3980 8297 7.551974 TCAATGTTTTGTGAATTGGTGAACATT 59.448 29.630 5.90 5.90 43.18 2.71
3981 8298 7.862512 ATGTTTTGTGAATTGGTGAACATTT 57.137 28.000 0.00 0.00 33.81 2.32
3982 8299 7.678947 TGTTTTGTGAATTGGTGAACATTTT 57.321 28.000 0.00 0.00 0.00 1.82
3983 8300 7.524912 TGTTTTGTGAATTGGTGAACATTTTG 58.475 30.769 0.00 0.00 0.00 2.44
3984 8301 7.173907 TGTTTTGTGAATTGGTGAACATTTTGT 59.826 29.630 0.00 0.00 0.00 2.83
3985 8302 6.900568 TTGTGAATTGGTGAACATTTTGTC 57.099 33.333 0.00 0.00 0.00 3.18
3986 8303 5.970592 TGTGAATTGGTGAACATTTTGTCA 58.029 33.333 0.00 0.00 0.00 3.58
3987 8304 6.401394 TGTGAATTGGTGAACATTTTGTCAA 58.599 32.000 0.00 0.00 0.00 3.18
3988 8305 6.875726 TGTGAATTGGTGAACATTTTGTCAAA 59.124 30.769 0.00 0.00 0.00 2.69
3989 8306 7.551974 TGTGAATTGGTGAACATTTTGTCAAAT 59.448 29.630 0.00 0.00 32.36 2.32
3990 8307 8.397148 GTGAATTGGTGAACATTTTGTCAAATT 58.603 29.630 0.00 0.00 29.41 1.82
3991 8308 8.610896 TGAATTGGTGAACATTTTGTCAAATTC 58.389 29.630 0.00 1.40 29.41 2.17
3992 8309 8.503458 AATTGGTGAACATTTTGTCAAATTCA 57.497 26.923 8.19 8.19 29.41 2.57
3993 8310 6.900568 TGGTGAACATTTTGTCAAATTCAC 57.099 33.333 23.31 23.31 39.30 3.18
3994 8311 5.518128 TGGTGAACATTTTGTCAAATTCACG 59.482 36.000 23.87 7.39 40.13 4.35
3995 8312 5.051106 GGTGAACATTTTGTCAAATTCACGG 60.051 40.000 23.87 5.83 40.13 4.94
3996 8313 5.746245 GTGAACATTTTGTCAAATTCACGGA 59.254 36.000 19.75 0.00 34.51 4.69
3997 8314 5.746245 TGAACATTTTGTCAAATTCACGGAC 59.254 36.000 8.19 0.00 29.41 4.79
3999 8316 5.841810 ACATTTTGTCAAATTCACGGACAT 58.158 33.333 0.00 0.00 40.84 3.06
4001 8318 6.760770 ACATTTTGTCAAATTCACGGACATTT 59.239 30.769 0.00 0.00 40.84 2.32
4006 8323 5.298026 TGTCAAATTCACGGACATTTTCTGA 59.702 36.000 0.00 0.00 36.69 3.27
4007 8324 6.183360 TGTCAAATTCACGGACATTTTCTGAA 60.183 34.615 0.00 0.00 36.69 3.02
4008 8325 6.863126 GTCAAATTCACGGACATTTTCTGAAT 59.137 34.615 0.00 0.00 33.86 2.57
4014 8331 3.749088 ACGGACATTTTCTGAATACGCAA 59.251 39.130 0.00 0.00 34.26 4.85
4016 8333 4.553429 CGGACATTTTCTGAATACGCAAAC 59.447 41.667 0.00 0.00 31.20 2.93
4021 8338 6.586082 ACATTTTCTGAATACGCAAACATTCC 59.414 34.615 0.00 0.00 31.43 3.01
4024 8341 3.689161 TCTGAATACGCAAACATTCCTGG 59.311 43.478 0.00 0.00 31.43 4.45
4026 8343 3.438781 TGAATACGCAAACATTCCTGGAC 59.561 43.478 0.00 0.00 31.43 4.02
4028 8345 1.909700 ACGCAAACATTCCTGGACAT 58.090 45.000 0.00 0.00 0.00 3.06
4029 8346 2.238521 ACGCAAACATTCCTGGACATT 58.761 42.857 0.00 0.00 0.00 2.71
4117 10244 9.844790 TTGAATCTGTGAACATGTTATGATTTC 57.155 29.630 11.95 10.93 0.00 2.17
4118 10245 8.461222 TGAATCTGTGAACATGTTATGATTTCC 58.539 33.333 11.95 8.42 0.00 3.13
4120 10247 7.381766 TCTGTGAACATGTTATGATTTCCTG 57.618 36.000 11.95 0.00 0.00 3.86
4121 10248 7.167535 TCTGTGAACATGTTATGATTTCCTGA 58.832 34.615 11.95 1.01 0.00 3.86
4123 10250 7.592938 TGTGAACATGTTATGATTTCCTGAAC 58.407 34.615 11.95 0.00 0.00 3.18
4124 10251 7.230309 TGTGAACATGTTATGATTTCCTGAACA 59.770 33.333 11.95 0.00 34.73 3.18
4125 10252 8.246180 GTGAACATGTTATGATTTCCTGAACAT 58.754 33.333 11.95 0.00 40.46 2.71
4126 10253 8.805175 TGAACATGTTATGATTTCCTGAACATT 58.195 29.630 11.95 0.00 38.37 2.71
4127 10254 9.643693 GAACATGTTATGATTTCCTGAACATTT 57.356 29.630 11.95 0.00 38.37 2.32
4138 10265 9.868389 GATTTCCTGAACATTTTTCAAAATCAC 57.132 29.630 13.12 0.00 36.56 3.06
4140 10267 6.800543 TCCTGAACATTTTTCAAAATCACGA 58.199 32.000 0.00 0.00 36.52 4.35
4144 10271 8.417780 TGAACATTTTTCAAAATCACGAACAT 57.582 26.923 0.00 0.00 36.52 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 3.857052 TCTACAACGCCATCTTTGTAGG 58.143 45.455 17.24 4.16 46.50 3.18
81 82 2.484264 GTGCTTCTACAACGCCATCTTT 59.516 45.455 0.00 0.00 0.00 2.52
89 90 0.975544 CGTCTCGTGCTTCTACAACG 59.024 55.000 0.00 0.00 0.00 4.10
144 145 6.949352 ACTCATGAACACTGAAATCTTTGT 57.051 33.333 0.00 0.00 0.00 2.83
146 147 6.547141 TCCAACTCATGAACACTGAAATCTTT 59.453 34.615 0.00 0.00 0.00 2.52
155 156 6.294899 CCAATCAAATCCAACTCATGAACACT 60.295 38.462 0.00 0.00 0.00 3.55
171 172 6.669154 ACCAATATCCTGTGTTCCAATCAAAT 59.331 34.615 0.00 0.00 0.00 2.32
174 175 4.949238 CACCAATATCCTGTGTTCCAATCA 59.051 41.667 0.00 0.00 0.00 2.57
176 177 4.264352 ACCACCAATATCCTGTGTTCCAAT 60.264 41.667 0.00 0.00 0.00 3.16
177 178 3.075283 ACCACCAATATCCTGTGTTCCAA 59.925 43.478 0.00 0.00 0.00 3.53
187 188 2.025321 ACCCAAGTCACCACCAATATCC 60.025 50.000 0.00 0.00 0.00 2.59
207 208 3.278157 GCCTGGTAGCTTGGCAAC 58.722 61.111 19.45 0.00 45.46 4.17
224 225 7.514784 TCCATCATTATAGTGATTTTGCCTG 57.485 36.000 7.94 0.00 36.72 4.85
225 226 8.000709 TCTTCCATCATTATAGTGATTTTGCCT 58.999 33.333 7.94 0.00 36.72 4.75
267 272 8.696374 CAGACATAAGTTGATCCTAAACCTCTA 58.304 37.037 0.00 0.00 0.00 2.43
282 287 7.959175 TGGTTTACTAGTGTCAGACATAAGTT 58.041 34.615 20.11 9.30 31.37 2.66
295 300 7.254117 CGTTTGCATATCTCTGGTTTACTAGTG 60.254 40.741 5.39 0.00 0.00 2.74
303 308 1.665679 CGCGTTTGCATATCTCTGGTT 59.334 47.619 0.00 0.00 42.97 3.67
307 312 1.490693 CGCCGCGTTTGCATATCTCT 61.491 55.000 4.92 0.00 42.97 3.10
346 360 2.254546 TACTGTTCACCTTGGTGCAG 57.745 50.000 19.03 19.03 0.00 4.41
435 450 2.415697 AAAATTTGGCACGGACTTCG 57.584 45.000 0.00 0.00 45.88 3.79
455 470 4.218417 GCTACTGAAATGTCCAAACACCAT 59.782 41.667 0.00 0.00 38.48 3.55
459 474 8.100791 ACTAATAGCTACTGAAATGTCCAAACA 58.899 33.333 0.00 0.00 40.38 2.83
521 536 6.516739 TTGGTCAAAACAGTACATGAACAA 57.483 33.333 0.00 8.73 44.67 2.83
523 538 7.491048 ACAAATTGGTCAAAACAGTACATGAAC 59.509 33.333 0.00 0.00 0.00 3.18
528 543 8.499162 CAAAAACAAATTGGTCAAAACAGTACA 58.501 29.630 0.00 0.00 0.00 2.90
538 553 4.774124 TCATGGCAAAAACAAATTGGTCA 58.226 34.783 0.00 0.00 0.00 4.02
539 554 4.319694 GCTCATGGCAAAAACAAATTGGTC 60.320 41.667 0.00 0.00 41.35 4.02
540 555 3.565063 GCTCATGGCAAAAACAAATTGGT 59.435 39.130 0.00 0.00 41.35 3.67
541 556 3.816523 AGCTCATGGCAAAAACAAATTGG 59.183 39.130 8.58 0.00 44.79 3.16
542 557 4.083696 GGAGCTCATGGCAAAAACAAATTG 60.084 41.667 17.19 0.00 44.79 2.32
543 558 4.067192 GGAGCTCATGGCAAAAACAAATT 58.933 39.130 17.19 0.00 44.79 1.82
545 560 2.699846 AGGAGCTCATGGCAAAAACAAA 59.300 40.909 17.19 0.00 44.79 2.83
548 563 1.888512 TGAGGAGCTCATGGCAAAAAC 59.111 47.619 17.19 0.00 44.79 2.43
569 599 5.117592 CCAAATTTCAGCTTGTTCGAACATC 59.882 40.000 30.10 23.20 38.95 3.06
574 604 2.360483 TGCCAAATTTCAGCTTGTTCGA 59.640 40.909 10.28 0.00 0.00 3.71
605 635 4.471904 AGTTCGAAGATGCTCCAATACA 57.528 40.909 0.00 0.00 35.04 2.29
679 719 1.413077 CTCAGGCTCATCTGCATCTCA 59.587 52.381 0.00 0.00 34.91 3.27
680 720 1.874739 GCTCAGGCTCATCTGCATCTC 60.875 57.143 0.00 0.00 34.91 2.75
681 721 0.107081 GCTCAGGCTCATCTGCATCT 59.893 55.000 0.00 0.00 34.91 2.90
697 737 4.380531 TCCGGATATTCAATTCAGTGCTC 58.619 43.478 0.00 0.00 0.00 4.26
698 738 4.422073 TCCGGATATTCAATTCAGTGCT 57.578 40.909 0.00 0.00 0.00 4.40
703 743 5.296531 CACACACATCCGGATATTCAATTCA 59.703 40.000 18.63 0.00 0.00 2.57
707 747 2.942376 GCACACACATCCGGATATTCAA 59.058 45.455 18.63 0.00 0.00 2.69
716 756 5.743398 CCAATAAATAAAGCACACACATCCG 59.257 40.000 0.00 0.00 0.00 4.18
743 783 2.234414 GTGTTAATCGTGGAGTACCCCA 59.766 50.000 0.00 0.00 34.81 4.96
744 784 2.234414 TGTGTTAATCGTGGAGTACCCC 59.766 50.000 0.00 0.00 34.81 4.95
745 785 3.598019 TGTGTTAATCGTGGAGTACCC 57.402 47.619 0.00 0.00 34.81 3.69
746 786 6.148150 TGAAATTGTGTTAATCGTGGAGTACC 59.852 38.462 0.00 0.00 0.00 3.34
747 787 7.124347 TGAAATTGTGTTAATCGTGGAGTAC 57.876 36.000 0.00 0.00 0.00 2.73
748 788 7.915293 ATGAAATTGTGTTAATCGTGGAGTA 57.085 32.000 0.00 0.00 0.00 2.59
749 789 6.817765 ATGAAATTGTGTTAATCGTGGAGT 57.182 33.333 0.00 0.00 0.00 3.85
750 790 9.787532 AATTATGAAATTGTGTTAATCGTGGAG 57.212 29.630 0.00 0.00 33.97 3.86
751 791 9.781834 GAATTATGAAATTGTGTTAATCGTGGA 57.218 29.630 0.00 0.00 35.41 4.02
752 792 9.787532 AGAATTATGAAATTGTGTTAATCGTGG 57.212 29.630 0.00 0.00 35.41 4.94
754 794 9.787532 CCAGAATTATGAAATTGTGTTAATCGT 57.212 29.630 0.54 0.00 42.14 3.73
755 795 9.236691 CCCAGAATTATGAAATTGTGTTAATCG 57.763 33.333 0.54 0.00 42.14 3.34
758 798 9.921637 GTTCCCAGAATTATGAAATTGTGTTAA 57.078 29.630 0.54 0.27 42.14 2.01
759 799 9.083422 TGTTCCCAGAATTATGAAATTGTGTTA 57.917 29.630 0.54 0.00 42.14 2.41
760 800 7.961351 TGTTCCCAGAATTATGAAATTGTGTT 58.039 30.769 0.54 0.00 42.14 3.32
761 801 7.451255 TCTGTTCCCAGAATTATGAAATTGTGT 59.549 33.333 0.54 0.00 44.67 3.72
762 802 7.829725 TCTGTTCCCAGAATTATGAAATTGTG 58.170 34.615 0.54 2.04 44.67 3.33
776 816 2.421388 CCAACTGTGTTCTGTTCCCAGA 60.421 50.000 0.00 0.00 45.95 3.86
777 817 1.949525 CCAACTGTGTTCTGTTCCCAG 59.050 52.381 0.00 0.00 40.25 4.45
778 818 2.021723 GCCAACTGTGTTCTGTTCCCA 61.022 52.381 0.00 0.00 34.38 4.37
779 819 0.668535 GCCAACTGTGTTCTGTTCCC 59.331 55.000 0.00 0.00 34.38 3.97
780 820 1.388547 TGCCAACTGTGTTCTGTTCC 58.611 50.000 0.00 0.00 34.38 3.62
781 821 3.066621 TCAATGCCAACTGTGTTCTGTTC 59.933 43.478 0.00 0.00 34.38 3.18
782 822 3.023119 TCAATGCCAACTGTGTTCTGTT 58.977 40.909 0.00 0.00 36.43 3.16
783 823 2.653726 TCAATGCCAACTGTGTTCTGT 58.346 42.857 0.00 0.00 0.00 3.41
784 824 3.253921 TCATCAATGCCAACTGTGTTCTG 59.746 43.478 0.00 0.00 0.00 3.02
785 825 3.489355 TCATCAATGCCAACTGTGTTCT 58.511 40.909 0.00 0.00 0.00 3.01
786 826 3.921119 TCATCAATGCCAACTGTGTTC 57.079 42.857 0.00 0.00 0.00 3.18
787 827 3.384146 TGTTCATCAATGCCAACTGTGTT 59.616 39.130 0.00 0.00 0.00 3.32
788 828 2.957680 TGTTCATCAATGCCAACTGTGT 59.042 40.909 0.00 0.00 0.00 3.72
789 829 3.646611 TGTTCATCAATGCCAACTGTG 57.353 42.857 0.00 0.00 0.00 3.66
790 830 3.384146 TGTTGTTCATCAATGCCAACTGT 59.616 39.130 18.03 0.00 38.74 3.55
791 831 3.979948 TGTTGTTCATCAATGCCAACTG 58.020 40.909 18.03 0.00 38.74 3.16
792 832 3.890756 TCTGTTGTTCATCAATGCCAACT 59.109 39.130 18.03 0.00 38.74 3.16
793 833 4.232221 CTCTGTTGTTCATCAATGCCAAC 58.768 43.478 13.76 13.76 38.59 3.77
794 834 3.305539 GCTCTGTTGTTCATCAATGCCAA 60.306 43.478 0.00 0.00 38.38 4.52
795 835 2.229543 GCTCTGTTGTTCATCAATGCCA 59.770 45.455 0.00 0.00 38.38 4.92
796 836 2.730090 CGCTCTGTTGTTCATCAATGCC 60.730 50.000 0.00 0.00 38.38 4.40
797 837 2.512885 CGCTCTGTTGTTCATCAATGC 58.487 47.619 0.00 0.00 38.38 3.56
798 838 2.730090 GCCGCTCTGTTGTTCATCAATG 60.730 50.000 0.00 0.00 38.38 2.82
799 839 1.470098 GCCGCTCTGTTGTTCATCAAT 59.530 47.619 0.00 0.00 38.38 2.57
800 840 0.874390 GCCGCTCTGTTGTTCATCAA 59.126 50.000 0.00 0.00 0.00 2.57
801 841 0.955428 GGCCGCTCTGTTGTTCATCA 60.955 55.000 0.00 0.00 0.00 3.07
802 842 1.648467 GGGCCGCTCTGTTGTTCATC 61.648 60.000 0.00 0.00 0.00 2.92
803 843 1.675641 GGGCCGCTCTGTTGTTCAT 60.676 57.895 0.00 0.00 0.00 2.57
804 844 2.281484 GGGCCGCTCTGTTGTTCA 60.281 61.111 0.00 0.00 0.00 3.18
805 845 3.423154 CGGGCCGCTCTGTTGTTC 61.423 66.667 15.42 0.00 0.00 3.18
806 846 3.883744 CTCGGGCCGCTCTGTTGTT 62.884 63.158 23.83 0.00 0.00 2.83
807 847 4.379243 CTCGGGCCGCTCTGTTGT 62.379 66.667 23.83 0.00 0.00 3.32
811 851 4.821589 GTTCCTCGGGCCGCTCTG 62.822 72.222 23.83 10.93 0.00 3.35
813 853 4.821589 CAGTTCCTCGGGCCGCTC 62.822 72.222 23.83 9.17 0.00 5.03
832 872 2.202987 CCATCTGCCGCTCAGTCC 60.203 66.667 0.00 0.00 43.32 3.85
887 928 2.203015 TCCTCTTTATGCCGCGGC 60.203 61.111 42.35 42.35 42.35 6.53
888 929 2.237751 CGTCCTCTTTATGCCGCGG 61.238 63.158 24.05 24.05 0.00 6.46
889 930 1.480219 GACGTCCTCTTTATGCCGCG 61.480 60.000 3.51 0.00 0.00 6.46
890 931 1.480219 CGACGTCCTCTTTATGCCGC 61.480 60.000 10.58 0.00 0.00 6.53
891 932 0.099968 TCGACGTCCTCTTTATGCCG 59.900 55.000 10.58 0.00 0.00 5.69
892 933 2.034812 AGATCGACGTCCTCTTTATGCC 59.965 50.000 10.58 0.00 0.00 4.40
894 935 3.046390 GCAGATCGACGTCCTCTTTATG 58.954 50.000 10.58 3.16 0.00 1.90
895 936 2.287069 CGCAGATCGACGTCCTCTTTAT 60.287 50.000 10.58 0.00 41.67 1.40
896 937 1.063616 CGCAGATCGACGTCCTCTTTA 59.936 52.381 10.58 0.00 41.67 1.85
901 947 4.194720 GGCGCAGATCGACGTCCT 62.195 66.667 10.83 0.00 41.67 3.85
1172 1281 0.889186 ATCCCGGCATTAATCACCGC 60.889 55.000 17.34 4.30 45.58 5.68
1173 1282 0.874390 CATCCCGGCATTAATCACCG 59.126 55.000 16.25 16.25 46.50 4.94
1378 1488 6.647334 TCTACAATGCCAGAAATTTTGTGA 57.353 33.333 7.79 0.00 33.03 3.58
1383 1493 6.375455 ACGAGATTCTACAATGCCAGAAATTT 59.625 34.615 2.62 0.00 34.61 1.82
1384 1494 5.882557 ACGAGATTCTACAATGCCAGAAATT 59.117 36.000 2.62 0.00 34.61 1.82
1385 1495 5.431765 ACGAGATTCTACAATGCCAGAAAT 58.568 37.500 2.62 0.00 34.61 2.17
1466 1928 7.615365 TGATTTCTGACTGCAGGGTTATATTTT 59.385 33.333 19.93 0.00 42.53 1.82
1543 2005 2.618709 CCACAACCTTCTGAACCTTCAC 59.381 50.000 0.00 0.00 32.90 3.18
1593 2055 1.153756 CTGAGGCCAGTTGGGGTTT 59.846 57.895 5.01 0.00 37.04 3.27
1685 2307 7.013846 GCTCTATCACCTCACAGTTCTAGTAAT 59.986 40.741 0.00 0.00 0.00 1.89
1686 2308 6.319152 GCTCTATCACCTCACAGTTCTAGTAA 59.681 42.308 0.00 0.00 0.00 2.24
1687 2309 5.823570 GCTCTATCACCTCACAGTTCTAGTA 59.176 44.000 0.00 0.00 0.00 1.82
1710 2332 2.339400 CGTTGCGACTGAATTCAATTGC 59.661 45.455 19.87 19.87 0.00 3.56
1715 2337 3.021269 AGTACGTTGCGACTGAATTCA 57.979 42.857 8.12 8.12 0.00 2.57
1840 5239 6.533367 TGTTGCAACCATTTTTAGTTTCTGAC 59.467 34.615 26.14 0.00 0.00 3.51
1900 5299 3.498774 AGATTATACCAAGCCTGCCAG 57.501 47.619 0.00 0.00 0.00 4.85
1909 5308 8.026607 GCAACAGTTTTAGCAAGATTATACCAA 58.973 33.333 0.00 0.00 0.00 3.67
1917 5316 5.532406 TCTTCAGCAACAGTTTTAGCAAGAT 59.468 36.000 0.00 0.00 0.00 2.40
2092 5491 7.769652 AGGTAAATGATAATCCTAGGGCAAAT 58.230 34.615 9.46 0.00 0.00 2.32
2216 5972 9.921637 GGATTCAGTTATTCTATAGAACCTCTG 57.078 37.037 17.35 20.87 36.80 3.35
2217 5973 9.661954 TGGATTCAGTTATTCTATAGAACCTCT 57.338 33.333 17.35 12.01 36.80 3.69
2259 6060 7.769044 CGAGAGGATTTTTCCATAAGGTCTAAA 59.231 37.037 0.00 0.00 35.89 1.85
2799 6667 7.779754 TTTACATAGTTGTAGTCAGGGTACA 57.220 36.000 0.00 0.00 39.43 2.90
2833 6701 5.723672 AGGAACACGTGATAAGAGAAGAA 57.276 39.130 25.01 0.00 0.00 2.52
2847 6715 5.346551 TCGTTTGATACATACAAGGAACACG 59.653 40.000 0.00 0.00 31.94 4.49
2869 6738 2.031157 GGTGTTCAGGGAAAATGTGTCG 60.031 50.000 0.00 0.00 0.00 4.35
2888 6757 3.359695 ACCATATAAACAAGCACGGGT 57.640 42.857 0.00 0.00 0.00 5.28
2929 6798 2.263741 CGGCCTTGCTGCAGAAAGT 61.264 57.895 28.96 0.00 0.00 2.66
2977 6846 2.994849 ACTCAATTTTGCCGACGAAAC 58.005 42.857 0.00 0.00 31.89 2.78
3066 6935 1.918262 TCCACATCCTGCAGAATTCCT 59.082 47.619 17.39 0.00 0.00 3.36
3171 7227 1.302366 TCAGCAAGTCACAAGCACAG 58.698 50.000 0.00 0.00 0.00 3.66
3223 7279 5.078949 TCATCTGCCCTTGAGATTGAAAAA 58.921 37.500 0.00 0.00 0.00 1.94
3224 7280 4.665451 TCATCTGCCCTTGAGATTGAAAA 58.335 39.130 0.00 0.00 0.00 2.29
3271 7329 4.602340 AGTTATCTACGGTAGGCAATGG 57.398 45.455 14.82 0.00 0.00 3.16
3407 7501 6.318648 TCAATACTGAAATCGGAAATTGGAGG 59.681 38.462 15.47 0.00 33.81 4.30
3409 7503 7.628366 GCTTCAATACTGAAATCGGAAATTGGA 60.628 37.037 15.47 10.16 41.05 3.53
3412 7506 7.156876 TGCTTCAATACTGAAATCGGAAATT 57.843 32.000 0.00 0.00 41.05 1.82
3466 7560 4.828939 AGTGATGATGAGAGATGAGACTCC 59.171 45.833 0.00 0.00 37.60 3.85
3514 7608 0.179026 CACATCCTATGCTGCTGGCT 60.179 55.000 0.00 0.00 42.39 4.75
3517 7611 1.938577 GTCACACATCCTATGCTGCTG 59.061 52.381 0.00 0.00 0.00 4.41
3518 7612 1.556451 TGTCACACATCCTATGCTGCT 59.444 47.619 0.00 0.00 0.00 4.24
3523 7617 2.270923 CGTGGTGTCACACATCCTATG 58.729 52.381 10.85 0.00 43.79 2.23
3524 7618 1.405526 GCGTGGTGTCACACATCCTAT 60.406 52.381 10.85 0.00 43.79 2.57
3532 7626 0.249699 CCTAAGTGCGTGGTGTCACA 60.250 55.000 5.12 0.00 43.79 3.58
3533 7627 0.949105 CCCTAAGTGCGTGGTGTCAC 60.949 60.000 0.00 0.00 40.36 3.67
3534 7628 1.369692 CCCTAAGTGCGTGGTGTCA 59.630 57.895 0.00 0.00 0.00 3.58
3536 7630 2.032071 GCCCTAAGTGCGTGGTGT 59.968 61.111 0.00 0.00 0.00 4.16
3537 7631 1.369091 GATGCCCTAAGTGCGTGGTG 61.369 60.000 0.00 0.00 0.00 4.17
3538 7632 1.078426 GATGCCCTAAGTGCGTGGT 60.078 57.895 0.00 0.00 0.00 4.16
3539 7633 0.392998 AAGATGCCCTAAGTGCGTGG 60.393 55.000 0.00 0.00 0.00 4.94
3540 7634 1.453155 AAAGATGCCCTAAGTGCGTG 58.547 50.000 0.00 0.00 0.00 5.34
3542 7636 2.359900 AGAAAAGATGCCCTAAGTGCG 58.640 47.619 0.00 0.00 0.00 5.34
3543 7637 4.770795 TCTAGAAAAGATGCCCTAAGTGC 58.229 43.478 0.00 0.00 0.00 4.40
3544 7638 7.442666 GGTATTCTAGAAAAGATGCCCTAAGTG 59.557 40.741 9.71 0.00 33.05 3.16
3545 7639 7.127339 TGGTATTCTAGAAAAGATGCCCTAAGT 59.873 37.037 9.71 0.00 33.05 2.24
3546 7640 7.509546 TGGTATTCTAGAAAAGATGCCCTAAG 58.490 38.462 9.71 0.00 33.05 2.18
3547 7641 7.446106 TGGTATTCTAGAAAAGATGCCCTAA 57.554 36.000 9.71 0.00 33.05 2.69
3549 7643 5.975988 TGGTATTCTAGAAAAGATGCCCT 57.024 39.130 9.71 0.00 33.05 5.19
3552 7646 7.792374 TGACATGGTATTCTAGAAAAGATGC 57.208 36.000 9.71 0.00 33.05 3.91
3615 7709 7.793648 GTTGGCAAACTTGAATACCATGGTATT 60.794 37.037 38.69 38.69 41.54 1.89
3618 7712 3.505386 TGGCAAACTTGAATACCATGGT 58.495 40.909 23.55 23.55 0.00 3.55
3619 7713 4.244862 GTTGGCAAACTTGAATACCATGG 58.755 43.478 11.19 11.19 33.22 3.66
3620 7714 4.880759 TGTTGGCAAACTTGAATACCATG 58.119 39.130 0.00 0.00 37.19 3.66
3621 7715 5.743636 ATGTTGGCAAACTTGAATACCAT 57.256 34.783 0.00 0.00 37.19 3.55
3622 7716 5.543507 AATGTTGGCAAACTTGAATACCA 57.456 34.783 0.00 0.00 37.19 3.25
3646 7740 9.658799 TGTAAAAGATGTTCACAATTTCCAAAA 57.341 25.926 0.00 0.00 0.00 2.44
3647 7741 9.658799 TTGTAAAAGATGTTCACAATTTCCAAA 57.341 25.926 0.25 0.00 0.00 3.28
3648 7742 9.658799 TTTGTAAAAGATGTTCACAATTTCCAA 57.341 25.926 4.28 0.00 0.00 3.53
3649 7743 9.829507 ATTTGTAAAAGATGTTCACAATTTCCA 57.170 25.926 4.28 0.00 0.00 3.53
3653 7747 9.934190 GCAAATTTGTAAAAGATGTTCACAATT 57.066 25.926 19.03 0.05 0.00 2.32
3655 7749 8.484641 TGCAAATTTGTAAAAGATGTTCACAA 57.515 26.923 19.03 0.25 0.00 3.33
3656 7750 8.484641 TTGCAAATTTGTAAAAGATGTTCACA 57.515 26.923 17.87 0.94 29.82 3.58
3657 7751 9.209297 GTTTGCAAATTTGTAAAAGATGTTCAC 57.791 29.630 28.51 14.63 42.76 3.18
3659 7753 9.934190 ATGTTTGCAAATTTGTAAAAGATGTTC 57.066 25.926 28.51 17.79 42.76 3.18
3687 7781 8.341173 ACAAAAATATGCTCGCAATTTCAAAAA 58.659 25.926 0.00 0.00 0.00 1.94
3689 7783 7.418840 ACAAAAATATGCTCGCAATTTCAAA 57.581 28.000 0.00 0.00 0.00 2.69
3691 7785 7.812191 AGTTACAAAAATATGCTCGCAATTTCA 59.188 29.630 0.00 0.00 0.00 2.69
3692 7786 8.173321 AGTTACAAAAATATGCTCGCAATTTC 57.827 30.769 0.00 0.00 0.00 2.17
3693 7787 8.028938 AGAGTTACAAAAATATGCTCGCAATTT 58.971 29.630 0.00 1.66 0.00 1.82
3694 7788 7.538575 AGAGTTACAAAAATATGCTCGCAATT 58.461 30.769 0.00 0.00 0.00 2.32
3695 7789 7.088589 AGAGTTACAAAAATATGCTCGCAAT 57.911 32.000 0.00 0.00 0.00 3.56
3696 7790 6.494893 AGAGTTACAAAAATATGCTCGCAA 57.505 33.333 0.00 0.00 0.00 4.85
3697 7791 6.148645 TCAAGAGTTACAAAAATATGCTCGCA 59.851 34.615 0.00 0.00 0.00 5.10
3698 7792 6.542852 TCAAGAGTTACAAAAATATGCTCGC 58.457 36.000 0.00 0.00 0.00 5.03
3699 7793 9.559958 AATTCAAGAGTTACAAAAATATGCTCG 57.440 29.630 0.00 0.00 0.00 5.03
3746 7840 6.800543 TCAGAAAATGTCCATCGTTCAAAAA 58.199 32.000 6.49 0.00 0.00 1.94
3747 7841 6.384258 TCAGAAAATGTCCATCGTTCAAAA 57.616 33.333 6.49 0.00 0.00 2.44
3750 7844 6.573664 AATTCAGAAAATGTCCATCGTTCA 57.426 33.333 0.00 0.00 0.00 3.18
3751 7845 7.382218 ACAAAATTCAGAAAATGTCCATCGTTC 59.618 33.333 0.00 0.00 0.00 3.95
3752 7846 7.169645 CACAAAATTCAGAAAATGTCCATCGTT 59.830 33.333 0.00 0.00 0.00 3.85
3753 7847 6.642131 CACAAAATTCAGAAAATGTCCATCGT 59.358 34.615 0.00 0.00 0.00 3.73
3754 7848 6.862608 TCACAAAATTCAGAAAATGTCCATCG 59.137 34.615 0.00 0.00 0.00 3.84
3755 7849 8.490355 GTTCACAAAATTCAGAAAATGTCCATC 58.510 33.333 0.00 0.00 0.00 3.51
3757 7851 7.277539 GTGTTCACAAAATTCAGAAAATGTCCA 59.722 33.333 0.00 0.00 0.00 4.02
3759 7853 7.492344 AGGTGTTCACAAAATTCAGAAAATGTC 59.508 33.333 5.32 0.00 0.00 3.06
3760 7854 7.330262 AGGTGTTCACAAAATTCAGAAAATGT 58.670 30.769 5.32 0.00 0.00 2.71
3761 7855 7.775397 AGGTGTTCACAAAATTCAGAAAATG 57.225 32.000 5.32 0.00 0.00 2.32
3762 7856 8.791327 AAAGGTGTTCACAAAATTCAGAAAAT 57.209 26.923 5.32 0.00 0.00 1.82
3765 7859 7.382110 TCAAAAGGTGTTCACAAAATTCAGAA 58.618 30.769 5.32 0.00 0.00 3.02
3766 7860 6.929625 TCAAAAGGTGTTCACAAAATTCAGA 58.070 32.000 5.32 0.00 0.00 3.27
3770 8087 9.007901 TGAATTTCAAAAGGTGTTCACAAAATT 57.992 25.926 5.32 6.66 0.00 1.82
3771 8088 8.450180 GTGAATTTCAAAAGGTGTTCACAAAAT 58.550 29.630 8.17 0.00 42.84 1.82
3774 8091 5.574830 CGTGAATTTCAAAAGGTGTTCACAA 59.425 36.000 12.03 0.00 43.24 3.33
3776 8093 5.336744 TCGTGAATTTCAAAAGGTGTTCAC 58.663 37.500 0.00 4.18 41.01 3.18
3779 8096 7.333174 ACAAAATCGTGAATTTCAAAAGGTGTT 59.667 29.630 0.00 0.00 36.54 3.32
3780 8097 6.816140 ACAAAATCGTGAATTTCAAAAGGTGT 59.184 30.769 0.00 0.00 36.54 4.16
3781 8098 7.232945 ACAAAATCGTGAATTTCAAAAGGTG 57.767 32.000 0.00 0.00 36.54 4.00
3783 8100 8.997960 CAAAACAAAATCGTGAATTTCAAAAGG 58.002 29.630 0.00 0.00 36.54 3.11
3787 8104 9.884465 AAAACAAAACAAAATCGTGAATTTCAA 57.116 22.222 0.00 0.00 36.54 2.69
3825 8142 8.442632 TTGAAAAATGGTCATGCATGTAAAAA 57.557 26.923 25.43 3.60 0.00 1.94
3826 8143 8.442632 TTTGAAAAATGGTCATGCATGTAAAA 57.557 26.923 25.43 10.94 0.00 1.52
3827 8144 8.618702 ATTTGAAAAATGGTCATGCATGTAAA 57.381 26.923 25.43 12.65 0.00 2.01
3828 8145 8.618702 AATTTGAAAAATGGTCATGCATGTAA 57.381 26.923 25.43 13.00 0.00 2.41
3829 8146 7.333921 GGAATTTGAAAAATGGTCATGCATGTA 59.666 33.333 25.43 13.90 0.00 2.29
3830 8147 6.149807 GGAATTTGAAAAATGGTCATGCATGT 59.850 34.615 25.43 4.01 0.00 3.21
3832 8149 6.373216 CAGGAATTTGAAAAATGGTCATGCAT 59.627 34.615 0.00 0.00 0.00 3.96
3834 8151 5.933463 TCAGGAATTTGAAAAATGGTCATGC 59.067 36.000 0.00 0.00 0.00 4.06
3835 8152 7.441760 TGTTCAGGAATTTGAAAAATGGTCATG 59.558 33.333 0.00 0.00 38.69 3.07
3836 8153 7.507829 TGTTCAGGAATTTGAAAAATGGTCAT 58.492 30.769 0.00 0.00 38.69 3.06
3837 8154 6.882656 TGTTCAGGAATTTGAAAAATGGTCA 58.117 32.000 0.00 0.00 38.69 4.02
3838 8155 7.784633 TTGTTCAGGAATTTGAAAAATGGTC 57.215 32.000 0.00 0.00 38.69 4.02
3840 8157 8.611654 AGATTGTTCAGGAATTTGAAAAATGG 57.388 30.769 11.40 0.00 42.34 3.16
3841 8158 9.485206 AGAGATTGTTCAGGAATTTGAAAAATG 57.515 29.630 11.40 0.00 42.34 2.32
3843 8160 8.694540 TCAGAGATTGTTCAGGAATTTGAAAAA 58.305 29.630 0.00 0.00 38.34 1.94
3844 8161 8.236585 TCAGAGATTGTTCAGGAATTTGAAAA 57.763 30.769 0.00 0.00 38.69 2.29
3845 8162 7.822161 TCAGAGATTGTTCAGGAATTTGAAA 57.178 32.000 0.00 0.00 38.69 2.69
3846 8163 7.822161 TTCAGAGATTGTTCAGGAATTTGAA 57.178 32.000 0.00 0.00 34.83 2.69
3847 8164 7.148356 CGATTCAGAGATTGTTCAGGAATTTGA 60.148 37.037 0.00 0.00 0.00 2.69
3848 8165 6.965500 CGATTCAGAGATTGTTCAGGAATTTG 59.035 38.462 0.00 0.00 0.00 2.32
3849 8166 6.881065 TCGATTCAGAGATTGTTCAGGAATTT 59.119 34.615 0.00 0.00 0.00 1.82
3850 8167 6.409704 TCGATTCAGAGATTGTTCAGGAATT 58.590 36.000 0.00 0.00 0.00 2.17
3852 8169 5.405935 TCGATTCAGAGATTGTTCAGGAA 57.594 39.130 0.00 0.00 0.00 3.36
3854 8171 5.354767 TCATCGATTCAGAGATTGTTCAGG 58.645 41.667 0.00 0.00 0.00 3.86
3857 8174 6.900568 AGTTCATCGATTCAGAGATTGTTC 57.099 37.500 0.00 0.00 0.00 3.18
3860 8177 8.417780 AAAGTAGTTCATCGATTCAGAGATTG 57.582 34.615 0.00 0.00 0.00 2.67
3861 8178 8.877779 CAAAAGTAGTTCATCGATTCAGAGATT 58.122 33.333 0.00 0.00 0.00 2.40
3862 8179 8.253810 TCAAAAGTAGTTCATCGATTCAGAGAT 58.746 33.333 0.00 0.00 0.00 2.75
3863 8180 7.602753 TCAAAAGTAGTTCATCGATTCAGAGA 58.397 34.615 0.00 0.00 0.00 3.10
3864 8181 7.818493 TCAAAAGTAGTTCATCGATTCAGAG 57.182 36.000 0.00 0.00 0.00 3.35
3865 8182 8.601845 TTTCAAAAGTAGTTCATCGATTCAGA 57.398 30.769 0.00 0.00 0.00 3.27
3866 8183 9.831737 AATTTCAAAAGTAGTTCATCGATTCAG 57.168 29.630 0.00 0.00 0.00 3.02
3869 8186 9.410556 CCAAATTTCAAAAGTAGTTCATCGATT 57.589 29.630 0.00 0.00 0.00 3.34
3871 8188 7.229707 TCCCAAATTTCAAAAGTAGTTCATCGA 59.770 33.333 0.00 0.00 0.00 3.59
3872 8189 7.367285 TCCCAAATTTCAAAAGTAGTTCATCG 58.633 34.615 0.00 0.00 0.00 3.84
3873 8190 8.978539 GTTCCCAAATTTCAAAAGTAGTTCATC 58.021 33.333 0.00 0.00 0.00 2.92
3874 8191 8.482128 TGTTCCCAAATTTCAAAAGTAGTTCAT 58.518 29.630 0.00 0.00 0.00 2.57
3876 8193 8.710835 TTGTTCCCAAATTTCAAAAGTAGTTC 57.289 30.769 0.00 0.00 0.00 3.01
3877 8194 9.679661 AATTGTTCCCAAATTTCAAAAGTAGTT 57.320 25.926 0.00 0.00 33.44 2.24
3878 8195 9.679661 AAATTGTTCCCAAATTTCAAAAGTAGT 57.320 25.926 0.00 0.00 33.44 2.73
3881 8198 9.018582 TCAAAATTGTTCCCAAATTTCAAAAGT 57.981 25.926 0.00 0.00 32.63 2.66
3882 8199 9.852091 TTCAAAATTGTTCCCAAATTTCAAAAG 57.148 25.926 0.00 0.00 32.63 2.27
3888 8205 9.800433 GTGAAATTCAAAATTGTTCCCAAATTT 57.200 25.926 0.00 0.00 34.72 1.82
3889 8206 8.127954 CGTGAAATTCAAAATTGTTCCCAAATT 58.872 29.630 0.00 0.00 33.44 1.82
3890 8207 7.638134 CGTGAAATTCAAAATTGTTCCCAAAT 58.362 30.769 0.00 0.00 33.44 2.32
3891 8208 6.457528 GCGTGAAATTCAAAATTGTTCCCAAA 60.458 34.615 0.00 0.00 33.44 3.28
3892 8209 5.007136 GCGTGAAATTCAAAATTGTTCCCAA 59.993 36.000 0.00 0.00 34.45 4.12
3893 8210 4.509600 GCGTGAAATTCAAAATTGTTCCCA 59.490 37.500 0.00 0.00 0.00 4.37
3894 8211 4.509600 TGCGTGAAATTCAAAATTGTTCCC 59.490 37.500 0.00 0.00 0.00 3.97
3895 8212 5.006165 TGTGCGTGAAATTCAAAATTGTTCC 59.994 36.000 0.00 0.00 0.00 3.62
3896 8213 6.030379 TGTGCGTGAAATTCAAAATTGTTC 57.970 33.333 0.00 0.00 0.00 3.18
3897 8214 6.601741 ATGTGCGTGAAATTCAAAATTGTT 57.398 29.167 0.00 0.00 0.00 2.83
3898 8215 6.601741 AATGTGCGTGAAATTCAAAATTGT 57.398 29.167 0.00 0.00 0.00 2.71
3899 8216 7.895582 AAAATGTGCGTGAAATTCAAAATTG 57.104 28.000 0.00 0.00 0.00 2.32
3946 8263 9.953697 CCAATTCACAAAACATTGATGATTTTT 57.046 25.926 0.00 0.00 31.57 1.94
3947 8264 9.122779 ACCAATTCACAAAACATTGATGATTTT 57.877 25.926 0.00 0.00 31.57 1.82
3948 8265 8.561212 CACCAATTCACAAAACATTGATGATTT 58.439 29.630 0.00 0.00 33.78 2.17
3949 8266 7.932491 TCACCAATTCACAAAACATTGATGATT 59.068 29.630 0.00 0.00 27.29 2.57
3950 8267 7.443477 TCACCAATTCACAAAACATTGATGAT 58.557 30.769 0.00 0.00 27.29 2.45
3951 8268 6.814043 TCACCAATTCACAAAACATTGATGA 58.186 32.000 0.00 0.00 29.43 2.92
3952 8269 7.011202 TGTTCACCAATTCACAAAACATTGATG 59.989 33.333 0.00 0.00 30.66 3.07
3953 8270 7.046652 TGTTCACCAATTCACAAAACATTGAT 58.953 30.769 0.00 0.00 30.66 2.57
3954 8271 6.401394 TGTTCACCAATTCACAAAACATTGA 58.599 32.000 0.00 0.00 30.66 2.57
3955 8272 6.659361 TGTTCACCAATTCACAAAACATTG 57.341 33.333 0.00 0.00 0.00 2.82
3956 8273 7.862512 AATGTTCACCAATTCACAAAACATT 57.137 28.000 0.00 0.00 39.63 2.71
3957 8274 7.862512 AAATGTTCACCAATTCACAAAACAT 57.137 28.000 0.00 0.00 37.44 2.71
3958 8275 7.173907 ACAAAATGTTCACCAATTCACAAAACA 59.826 29.630 0.00 0.00 0.00 2.83
3959 8276 7.525759 ACAAAATGTTCACCAATTCACAAAAC 58.474 30.769 0.00 0.00 0.00 2.43
3960 8277 7.388776 TGACAAAATGTTCACCAATTCACAAAA 59.611 29.630 0.00 0.00 0.00 2.44
3961 8278 6.875726 TGACAAAATGTTCACCAATTCACAAA 59.124 30.769 0.00 0.00 0.00 2.83
3962 8279 6.401394 TGACAAAATGTTCACCAATTCACAA 58.599 32.000 0.00 0.00 0.00 3.33
3963 8280 5.970592 TGACAAAATGTTCACCAATTCACA 58.029 33.333 0.00 0.00 0.00 3.58
3964 8281 6.900568 TTGACAAAATGTTCACCAATTCAC 57.099 33.333 0.00 0.00 0.00 3.18
3965 8282 8.503458 AATTTGACAAAATGTTCACCAATTCA 57.497 26.923 4.41 0.00 36.11 2.57
3966 8283 8.610896 TGAATTTGACAAAATGTTCACCAATTC 58.389 29.630 4.41 0.78 36.11 2.17
3967 8284 8.397148 GTGAATTTGACAAAATGTTCACCAATT 58.603 29.630 23.42 5.15 38.35 2.32
3968 8285 7.254387 CGTGAATTTGACAAAATGTTCACCAAT 60.254 33.333 25.68 0.18 39.73 3.16
3969 8286 6.035435 CGTGAATTTGACAAAATGTTCACCAA 59.965 34.615 25.68 4.40 39.73 3.67
3970 8287 5.518128 CGTGAATTTGACAAAATGTTCACCA 59.482 36.000 25.68 5.09 39.73 4.17
3971 8288 5.051106 CCGTGAATTTGACAAAATGTTCACC 60.051 40.000 25.68 15.64 39.73 4.02
3972 8289 5.746245 TCCGTGAATTTGACAAAATGTTCAC 59.254 36.000 23.75 23.75 39.61 3.18
3973 8290 5.746245 GTCCGTGAATTTGACAAAATGTTCA 59.254 36.000 4.41 7.89 36.11 3.18
3974 8291 5.746245 TGTCCGTGAATTTGACAAAATGTTC 59.254 36.000 4.41 5.37 36.11 3.18
3975 8292 5.655488 TGTCCGTGAATTTGACAAAATGTT 58.345 33.333 4.41 0.00 36.11 2.71
3976 8293 5.255710 TGTCCGTGAATTTGACAAAATGT 57.744 34.783 4.41 0.00 36.11 2.71
3977 8294 6.768029 AATGTCCGTGAATTTGACAAAATG 57.232 33.333 4.41 0.00 41.85 2.32
3978 8295 7.710475 AGAAAATGTCCGTGAATTTGACAAAAT 59.290 29.630 4.41 0.00 41.85 1.82
3979 8296 7.009999 CAGAAAATGTCCGTGAATTTGACAAAA 59.990 33.333 4.41 0.00 41.85 2.44
3980 8297 6.475076 CAGAAAATGTCCGTGAATTTGACAAA 59.525 34.615 2.48 2.48 41.85 2.83
3981 8298 5.976534 CAGAAAATGTCCGTGAATTTGACAA 59.023 36.000 0.00 0.00 41.85 3.18
3982 8299 5.298026 TCAGAAAATGTCCGTGAATTTGACA 59.702 36.000 0.00 0.00 42.65 3.58
3983 8300 5.757886 TCAGAAAATGTCCGTGAATTTGAC 58.242 37.500 0.00 0.00 0.00 3.18
3984 8301 6.384258 TTCAGAAAATGTCCGTGAATTTGA 57.616 33.333 0.00 0.00 0.00 2.69
3985 8302 7.007367 CGTATTCAGAAAATGTCCGTGAATTTG 59.993 37.037 1.53 0.00 38.49 2.32
3986 8303 7.021196 CGTATTCAGAAAATGTCCGTGAATTT 58.979 34.615 1.53 0.00 38.49 1.82
3987 8304 6.542852 CGTATTCAGAAAATGTCCGTGAATT 58.457 36.000 1.53 0.00 38.49 2.17
3988 8305 5.447279 GCGTATTCAGAAAATGTCCGTGAAT 60.447 40.000 0.00 0.00 40.22 2.57
3989 8306 4.142988 GCGTATTCAGAAAATGTCCGTGAA 60.143 41.667 0.00 0.00 0.00 3.18
3990 8307 3.369756 GCGTATTCAGAAAATGTCCGTGA 59.630 43.478 0.00 0.00 0.00 4.35
3991 8308 3.124466 TGCGTATTCAGAAAATGTCCGTG 59.876 43.478 0.00 0.00 0.00 4.94
3992 8309 3.331150 TGCGTATTCAGAAAATGTCCGT 58.669 40.909 0.00 0.00 0.00 4.69
3993 8310 4.335082 TTGCGTATTCAGAAAATGTCCG 57.665 40.909 0.00 0.00 0.00 4.79
3994 8311 5.457140 TGTTTGCGTATTCAGAAAATGTCC 58.543 37.500 0.00 0.00 0.00 4.02
3995 8312 7.201350 GGAATGTTTGCGTATTCAGAAAATGTC 60.201 37.037 0.00 0.00 35.51 3.06
3996 8313 6.586082 GGAATGTTTGCGTATTCAGAAAATGT 59.414 34.615 0.00 0.00 35.51 2.71
3997 8314 6.808212 AGGAATGTTTGCGTATTCAGAAAATG 59.192 34.615 0.00 0.00 35.51 2.32
3999 8316 6.148948 CAGGAATGTTTGCGTATTCAGAAAA 58.851 36.000 0.00 0.00 35.51 2.29
4001 8318 4.155826 CCAGGAATGTTTGCGTATTCAGAA 59.844 41.667 0.00 0.00 35.51 3.02
4006 8323 3.417101 TGTCCAGGAATGTTTGCGTATT 58.583 40.909 0.00 0.00 0.00 1.89
4007 8324 3.066291 TGTCCAGGAATGTTTGCGTAT 57.934 42.857 0.00 0.00 0.00 3.06
4008 8325 2.552599 TGTCCAGGAATGTTTGCGTA 57.447 45.000 0.00 0.00 0.00 4.42
4039 8356 9.434420 TTGAATGTTCAAAAAGTGTTTCTGATT 57.566 25.926 5.75 0.00 43.62 2.57
4093 10220 8.680903 AGGAAATCATAACATGTTCACAGATTC 58.319 33.333 15.85 12.96 0.00 2.52
4095 10222 7.830697 TCAGGAAATCATAACATGTTCACAGAT 59.169 33.333 15.85 11.10 0.00 2.90
4096 10223 7.167535 TCAGGAAATCATAACATGTTCACAGA 58.832 34.615 15.85 9.27 0.00 3.41
4097 10224 7.381766 TCAGGAAATCATAACATGTTCACAG 57.618 36.000 15.85 3.85 0.00 3.66
4098 10225 7.230309 TGTTCAGGAAATCATAACATGTTCACA 59.770 33.333 15.85 0.00 0.00 3.58
4099 10226 7.592938 TGTTCAGGAAATCATAACATGTTCAC 58.407 34.615 15.85 0.33 0.00 3.18
4100 10227 7.757941 TGTTCAGGAAATCATAACATGTTCA 57.242 32.000 15.85 0.45 0.00 3.18
4101 10228 9.643693 AAATGTTCAGGAAATCATAACATGTTC 57.356 29.630 15.85 0.00 39.88 3.18
4112 10239 9.868389 GTGATTTTGAAAAATGTTCAGGAAATC 57.132 29.630 12.87 12.87 38.64 2.17
4113 10240 8.550376 CGTGATTTTGAAAAATGTTCAGGAAAT 58.450 29.630 5.76 0.00 38.64 2.17
4114 10241 7.761704 TCGTGATTTTGAAAAATGTTCAGGAAA 59.238 29.630 5.76 0.00 38.64 3.13
4115 10242 7.261325 TCGTGATTTTGAAAAATGTTCAGGAA 58.739 30.769 5.76 0.00 38.64 3.36
4117 10244 7.009999 TGTTCGTGATTTTGAAAAATGTTCAGG 59.990 33.333 5.76 0.37 38.64 3.86
4118 10245 7.893824 TGTTCGTGATTTTGAAAAATGTTCAG 58.106 30.769 5.76 0.00 38.64 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.