Multiple sequence alignment - TraesCS5D01G276300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G276300 chr5D 100.000 3495 0 0 1 3495 378955618 378959112 0.000000e+00 6455.0
1 TraesCS5D01G276300 chr5D 79.151 1036 149 43 1494 2495 378997235 378996233 0.000000e+00 654.0
2 TraesCS5D01G276300 chr5D 79.908 433 72 12 1768 2193 378898375 378897951 1.580000e-78 303.0
3 TraesCS5D01G276300 chr5D 94.595 111 6 0 1042 1152 378899257 378899147 4.640000e-39 172.0
4 TraesCS5D01G276300 chr5D 73.784 473 101 19 1203 1666 378898932 378898474 7.760000e-37 165.0
5 TraesCS5D01G276300 chr5D 91.509 106 9 0 1042 1147 69111195 69111300 2.810000e-31 147.0
6 TraesCS5D01G276300 chr5D 96.774 31 1 0 1473 1503 379000153 379000123 6.000000e-03 52.8
7 TraesCS5D01G276300 chr5A 90.201 2143 141 35 561 2655 479046496 479048617 0.000000e+00 2730.0
8 TraesCS5D01G276300 chr5A 79.398 1063 156 43 1473 2495 479201321 479200282 0.000000e+00 691.0
9 TraesCS5D01G276300 chr5A 73.593 1333 279 57 1194 2488 478992478 478991181 8.900000e-121 444.0
10 TraesCS5D01G276300 chr5A 82.626 495 67 14 2012 2495 479226784 479226298 1.500000e-113 420.0
11 TraesCS5D01G276300 chr5A 81.156 467 69 17 1473 1936 479227337 479226887 1.190000e-94 357.0
12 TraesCS5D01G276300 chr5A 92.414 145 11 0 286 430 601725661 601725517 1.270000e-49 207.0
13 TraesCS5D01G276300 chr5B 92.059 1914 95 23 561 2450 454475955 454477835 0.000000e+00 2639.0
14 TraesCS5D01G276300 chr5B 91.617 1861 99 28 861 2679 454636311 454638156 0.000000e+00 2519.0
15 TraesCS5D01G276300 chr5B 78.625 1076 150 55 1469 2495 454654528 454653484 1.060000e-179 640.0
16 TraesCS5D01G276300 chr5B 82.961 493 63 14 2012 2495 454684239 454683759 3.220000e-115 425.0
17 TraesCS5D01G276300 chr5B 75.646 735 145 27 1485 2193 454403700 454402974 5.590000e-88 335.0
18 TraesCS5D01G276300 chr5B 79.259 405 68 13 1801 2193 454491453 454491053 5.750000e-68 268.0
19 TraesCS5D01G276300 chr5B 93.277 119 8 0 1034 1152 454407143 454407025 3.590000e-40 176.0
20 TraesCS5D01G276300 chr5B 92.523 107 8 0 1039 1145 454657710 454657604 1.680000e-33 154.0
21 TraesCS5D01G276300 chr5B 92.632 95 7 0 1042 1136 75018717 75018811 1.690000e-28 137.0
22 TraesCS5D01G276300 chr5B 93.103 87 5 1 561 647 454636098 454636183 3.660000e-25 126.0
23 TraesCS5D01G276300 chr6D 98.775 816 9 1 2681 3495 310389420 310390235 0.000000e+00 1450.0
24 TraesCS5D01G276300 chr6D 93.237 207 13 1 2696 2901 55897813 55898019 1.580000e-78 303.0
25 TraesCS5D01G276300 chr7D 98.153 812 14 1 2685 3495 597030256 597029445 0.000000e+00 1415.0
26 TraesCS5D01G276300 chr7D 90.099 101 10 0 1041 1141 506675094 506675194 7.870000e-27 132.0
27 TraesCS5D01G276300 chr1D 97.783 812 16 2 2685 3495 41577869 41578679 0.000000e+00 1399.0
28 TraesCS5D01G276300 chr2A 93.659 820 39 5 2684 3495 674187150 674186336 0.000000e+00 1214.0
29 TraesCS5D01G276300 chr2A 93.057 821 39 5 2683 3495 193584751 193583941 0.000000e+00 1184.0
30 TraesCS5D01G276300 chr2A 92.761 815 41 7 2689 3495 572709564 572710368 0.000000e+00 1162.0
31 TraesCS5D01G276300 chr2A 93.562 699 33 4 2680 3370 705552286 705552980 0.000000e+00 1031.0
32 TraesCS5D01G276300 chr2A 93.056 144 10 0 286 429 46095287 46095430 9.830000e-51 211.0
33 TraesCS5D01G276300 chr2A 92.908 141 10 0 289 429 218121927 218122067 4.570000e-49 206.0
34 TraesCS5D01G276300 chr1A 93.040 819 38 8 2685 3495 535339505 535338698 0.000000e+00 1179.0
35 TraesCS5D01G276300 chr7B 87.724 391 37 8 3106 3495 680775109 680774729 2.480000e-121 446.0
36 TraesCS5D01G276300 chr6B 90.604 298 15 8 1 287 89199634 89199339 1.970000e-102 383.0
37 TraesCS5D01G276300 chr2B 93.793 145 9 0 287 431 397925162 397925306 5.870000e-53 219.0
38 TraesCS5D01G276300 chr2B 94.286 140 7 1 289 427 268011324 268011185 2.730000e-51 213.0
39 TraesCS5D01G276300 chr4A 91.391 151 13 0 279 429 173703947 173703797 1.270000e-49 207.0
40 TraesCS5D01G276300 chr1B 92.361 144 11 0 286 429 356213760 356213903 4.570000e-49 206.0
41 TraesCS5D01G276300 chr1B 91.216 148 13 0 284 431 7888383 7888236 5.920000e-48 202.0
42 TraesCS5D01G276300 chr6A 91.724 145 12 0 287 431 54183515 54183659 5.920000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G276300 chr5D 378955618 378959112 3494 False 6455.000000 6455 100.000000 1 3495 1 chr5D.!!$F2 3494
1 TraesCS5D01G276300 chr5D 378996233 379000153 3920 True 353.400000 654 87.962500 1473 2495 2 chr5D.!!$R2 1022
2 TraesCS5D01G276300 chr5D 378897951 378899257 1306 True 213.333333 303 82.762333 1042 2193 3 chr5D.!!$R1 1151
3 TraesCS5D01G276300 chr5A 479046496 479048617 2121 False 2730.000000 2730 90.201000 561 2655 1 chr5A.!!$F1 2094
4 TraesCS5D01G276300 chr5A 479200282 479201321 1039 True 691.000000 691 79.398000 1473 2495 1 chr5A.!!$R2 1022
5 TraesCS5D01G276300 chr5A 478991181 478992478 1297 True 444.000000 444 73.593000 1194 2488 1 chr5A.!!$R1 1294
6 TraesCS5D01G276300 chr5A 479226298 479227337 1039 True 388.500000 420 81.891000 1473 2495 2 chr5A.!!$R4 1022
7 TraesCS5D01G276300 chr5B 454475955 454477835 1880 False 2639.000000 2639 92.059000 561 2450 1 chr5B.!!$F2 1889
8 TraesCS5D01G276300 chr5B 454636098 454638156 2058 False 1322.500000 2519 92.360000 561 2679 2 chr5B.!!$F3 2118
9 TraesCS5D01G276300 chr5B 454653484 454657710 4226 True 397.000000 640 85.574000 1039 2495 2 chr5B.!!$R4 1456
10 TraesCS5D01G276300 chr5B 454402974 454407143 4169 True 255.500000 335 84.461500 1034 2193 2 chr5B.!!$R3 1159
11 TraesCS5D01G276300 chr6D 310389420 310390235 815 False 1450.000000 1450 98.775000 2681 3495 1 chr6D.!!$F2 814
12 TraesCS5D01G276300 chr7D 597029445 597030256 811 True 1415.000000 1415 98.153000 2685 3495 1 chr7D.!!$R1 810
13 TraesCS5D01G276300 chr1D 41577869 41578679 810 False 1399.000000 1399 97.783000 2685 3495 1 chr1D.!!$F1 810
14 TraesCS5D01G276300 chr2A 674186336 674187150 814 True 1214.000000 1214 93.659000 2684 3495 1 chr2A.!!$R2 811
15 TraesCS5D01G276300 chr2A 193583941 193584751 810 True 1184.000000 1184 93.057000 2683 3495 1 chr2A.!!$R1 812
16 TraesCS5D01G276300 chr2A 572709564 572710368 804 False 1162.000000 1162 92.761000 2689 3495 1 chr2A.!!$F3 806
17 TraesCS5D01G276300 chr2A 705552286 705552980 694 False 1031.000000 1031 93.562000 2680 3370 1 chr2A.!!$F4 690
18 TraesCS5D01G276300 chr1A 535338698 535339505 807 True 1179.000000 1179 93.040000 2685 3495 1 chr1A.!!$R1 810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.036952 CTGTCCTCATGTGAACCGCT 60.037 55.0 0.00 0.0 0.00 5.52 F
354 355 0.037447 GGAGCTGCCTTTTCTCCACT 59.963 55.0 0.00 0.0 44.38 4.00 F
359 360 0.110486 TGCCTTTTCTCCACTCCACC 59.890 55.0 0.00 0.0 0.00 4.61 F
469 470 0.179181 AATTGCGAGCGAGTTGCATG 60.179 50.0 4.86 0.0 45.58 4.06 F
507 508 0.393808 GGCCCGCCTTAGAATTCACA 60.394 55.0 8.44 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1199 2583 1.000955 TCTTCTCCTCGCCTGAAACAC 59.999 52.381 0.00 0.0 0.00 3.32 R
1544 10234 1.838568 CGACACGACGACCACTCTCA 61.839 60.000 0.00 0.0 35.09 3.27 R
1679 10376 4.568956 TGATTATCATAGTGATGGTGCGG 58.431 43.478 2.82 0.0 37.70 5.69 R
2389 11249 0.386858 CGACGGTGTCTGTGATCGTT 60.387 55.000 0.00 0.0 34.06 3.85 R
2655 11516 4.918810 AATAATTTCGGGCATGTTCCTC 57.081 40.909 0.00 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 8.937634 TTTTAGTAGTTTTCAGAAAGACTCGT 57.062 30.769 11.66 6.07 0.00 4.18
62 63 7.925703 TTAGTAGTTTTCAGAAAGACTCGTG 57.074 36.000 11.66 0.00 0.00 4.35
63 64 4.745620 AGTAGTTTTCAGAAAGACTCGTGC 59.254 41.667 11.66 0.00 0.00 5.34
64 65 2.872858 AGTTTTCAGAAAGACTCGTGCC 59.127 45.455 0.00 0.00 0.00 5.01
65 66 1.497991 TTTCAGAAAGACTCGTGCCG 58.502 50.000 0.00 0.00 0.00 5.69
66 67 0.319555 TTCAGAAAGACTCGTGCCGG 60.320 55.000 0.00 0.00 0.00 6.13
67 68 1.176619 TCAGAAAGACTCGTGCCGGA 61.177 55.000 5.05 0.00 0.00 5.14
68 69 1.009389 CAGAAAGACTCGTGCCGGAC 61.009 60.000 5.05 0.00 0.00 4.79
69 70 1.179814 AGAAAGACTCGTGCCGGACT 61.180 55.000 5.05 0.00 0.00 3.85
70 71 0.319641 GAAAGACTCGTGCCGGACTT 60.320 55.000 5.05 0.00 0.00 3.01
71 72 0.106149 AAAGACTCGTGCCGGACTTT 59.894 50.000 5.05 1.77 0.00 2.66
72 73 0.106149 AAGACTCGTGCCGGACTTTT 59.894 50.000 5.05 0.00 0.00 2.27
73 74 0.106149 AGACTCGTGCCGGACTTTTT 59.894 50.000 5.05 0.00 0.00 1.94
92 93 2.455674 TTCTGTCCTCATGTGAACCG 57.544 50.000 0.00 0.00 0.00 4.44
93 94 0.037326 TCTGTCCTCATGTGAACCGC 60.037 55.000 0.00 0.00 0.00 5.68
94 95 0.036952 CTGTCCTCATGTGAACCGCT 60.037 55.000 0.00 0.00 0.00 5.52
95 96 1.204704 CTGTCCTCATGTGAACCGCTA 59.795 52.381 0.00 0.00 0.00 4.26
96 97 1.621317 TGTCCTCATGTGAACCGCTAA 59.379 47.619 0.00 0.00 0.00 3.09
97 98 2.037902 TGTCCTCATGTGAACCGCTAAA 59.962 45.455 0.00 0.00 0.00 1.85
98 99 2.673368 GTCCTCATGTGAACCGCTAAAG 59.327 50.000 0.00 0.00 0.00 1.85
99 100 2.301870 TCCTCATGTGAACCGCTAAAGT 59.698 45.455 0.00 0.00 0.00 2.66
100 101 2.673368 CCTCATGTGAACCGCTAAAGTC 59.327 50.000 0.00 0.00 0.00 3.01
101 102 3.325870 CTCATGTGAACCGCTAAAGTCA 58.674 45.455 0.00 0.00 0.00 3.41
102 103 3.734463 TCATGTGAACCGCTAAAGTCAA 58.266 40.909 0.00 0.00 0.00 3.18
103 104 4.130857 TCATGTGAACCGCTAAAGTCAAA 58.869 39.130 0.00 0.00 0.00 2.69
104 105 4.576873 TCATGTGAACCGCTAAAGTCAAAA 59.423 37.500 0.00 0.00 0.00 2.44
105 106 4.281525 TGTGAACCGCTAAAGTCAAAAC 57.718 40.909 0.00 0.00 0.00 2.43
106 107 3.242478 TGTGAACCGCTAAAGTCAAAACG 60.242 43.478 0.00 0.00 0.00 3.60
107 108 2.288458 TGAACCGCTAAAGTCAAAACGG 59.712 45.455 0.00 0.00 45.86 4.44
111 112 4.254745 CCGCTAAAGTCAAAACGGTATC 57.745 45.455 0.00 0.00 35.99 2.24
112 113 3.680937 CCGCTAAAGTCAAAACGGTATCA 59.319 43.478 0.00 0.00 35.99 2.15
113 114 4.331717 CCGCTAAAGTCAAAACGGTATCAT 59.668 41.667 0.00 0.00 35.99 2.45
114 115 5.163794 CCGCTAAAGTCAAAACGGTATCATT 60.164 40.000 0.00 0.00 35.99 2.57
115 116 5.957796 CGCTAAAGTCAAAACGGTATCATTC 59.042 40.000 0.00 0.00 0.00 2.67
116 117 6.183360 CGCTAAAGTCAAAACGGTATCATTCT 60.183 38.462 0.00 0.00 0.00 2.40
117 118 7.180748 GCTAAAGTCAAAACGGTATCATTCTC 58.819 38.462 0.00 0.00 0.00 2.87
118 119 7.064728 GCTAAAGTCAAAACGGTATCATTCTCT 59.935 37.037 0.00 0.00 0.00 3.10
119 120 6.969828 AAGTCAAAACGGTATCATTCTCTC 57.030 37.500 0.00 0.00 0.00 3.20
120 121 6.037786 AGTCAAAACGGTATCATTCTCTCA 57.962 37.500 0.00 0.00 0.00 3.27
121 122 6.644347 AGTCAAAACGGTATCATTCTCTCAT 58.356 36.000 0.00 0.00 0.00 2.90
122 123 7.782049 AGTCAAAACGGTATCATTCTCTCATA 58.218 34.615 0.00 0.00 0.00 2.15
123 124 8.258007 AGTCAAAACGGTATCATTCTCTCATAA 58.742 33.333 0.00 0.00 0.00 1.90
124 125 8.879759 GTCAAAACGGTATCATTCTCTCATAAA 58.120 33.333 0.00 0.00 0.00 1.40
125 126 9.443323 TCAAAACGGTATCATTCTCTCATAAAA 57.557 29.630 0.00 0.00 0.00 1.52
130 131 9.838339 ACGGTATCATTCTCTCATAAAATTTCT 57.162 29.630 0.00 0.00 0.00 2.52
136 137 9.948964 TCATTCTCTCATAAAATTTCTCTGTCA 57.051 29.630 0.00 0.00 0.00 3.58
139 140 8.206325 TCTCTCATAAAATTTCTCTGTCATGC 57.794 34.615 0.00 0.00 0.00 4.06
140 141 7.825761 TCTCTCATAAAATTTCTCTGTCATGCA 59.174 33.333 0.00 0.00 0.00 3.96
141 142 8.515695 TCTCATAAAATTTCTCTGTCATGCAT 57.484 30.769 0.00 0.00 0.00 3.96
142 143 8.403236 TCTCATAAAATTTCTCTGTCATGCATG 58.597 33.333 21.07 21.07 0.00 4.06
143 144 6.976349 TCATAAAATTTCTCTGTCATGCATGC 59.024 34.615 22.25 11.82 0.00 4.06
144 145 4.794278 AAATTTCTCTGTCATGCATGCA 57.206 36.364 25.04 25.04 0.00 3.96
145 146 3.777465 ATTTCTCTGTCATGCATGCAC 57.223 42.857 25.37 19.25 0.00 4.57
146 147 1.081094 TTCTCTGTCATGCATGCACG 58.919 50.000 25.37 16.65 0.00 5.34
147 148 1.062047 CTCTGTCATGCATGCACGC 59.938 57.895 25.37 16.15 0.00 5.34
154 155 2.871828 TGCATGCACGCATCAGTG 59.128 55.556 18.46 0.00 44.47 3.66
155 156 1.967494 TGCATGCACGCATCAGTGT 60.967 52.632 18.46 0.00 43.61 3.55
156 157 1.226211 GCATGCACGCATCAGTGTC 60.226 57.895 14.21 0.00 43.61 3.67
157 158 1.642037 GCATGCACGCATCAGTGTCT 61.642 55.000 14.21 0.00 43.61 3.41
158 159 0.372679 CATGCACGCATCAGTGTCTC 59.627 55.000 0.44 0.00 43.61 3.36
159 160 0.248565 ATGCACGCATCAGTGTCTCT 59.751 50.000 0.00 0.00 43.61 3.10
160 161 0.389037 TGCACGCATCAGTGTCTCTC 60.389 55.000 0.00 0.00 43.61 3.20
161 162 0.389037 GCACGCATCAGTGTCTCTCA 60.389 55.000 0.00 0.00 43.61 3.27
162 163 1.738365 GCACGCATCAGTGTCTCTCAT 60.738 52.381 0.00 0.00 43.61 2.90
163 164 1.925185 CACGCATCAGTGTCTCTCATG 59.075 52.381 0.00 0.00 36.03 3.07
164 165 1.821136 ACGCATCAGTGTCTCTCATGA 59.179 47.619 0.00 0.00 31.58 3.07
165 166 2.429971 ACGCATCAGTGTCTCTCATGAT 59.570 45.455 0.00 0.00 31.58 2.45
166 167 3.051327 CGCATCAGTGTCTCTCATGATC 58.949 50.000 0.00 0.00 30.09 2.92
167 168 3.391965 GCATCAGTGTCTCTCATGATCC 58.608 50.000 0.00 0.00 30.09 3.36
168 169 3.803021 GCATCAGTGTCTCTCATGATCCC 60.803 52.174 0.00 0.00 30.09 3.85
169 170 3.395054 TCAGTGTCTCTCATGATCCCT 57.605 47.619 0.00 0.00 0.00 4.20
170 171 3.295093 TCAGTGTCTCTCATGATCCCTC 58.705 50.000 0.00 0.00 0.00 4.30
171 172 3.053019 TCAGTGTCTCTCATGATCCCTCT 60.053 47.826 0.00 0.00 0.00 3.69
172 173 3.318839 CAGTGTCTCTCATGATCCCTCTC 59.681 52.174 0.00 0.00 0.00 3.20
173 174 3.205056 AGTGTCTCTCATGATCCCTCTCT 59.795 47.826 0.00 0.00 0.00 3.10
174 175 3.569701 GTGTCTCTCATGATCCCTCTCTC 59.430 52.174 0.00 0.00 0.00 3.20
175 176 3.203934 TGTCTCTCATGATCCCTCTCTCA 59.796 47.826 0.00 0.00 0.00 3.27
176 177 4.140971 TGTCTCTCATGATCCCTCTCTCAT 60.141 45.833 0.00 0.00 32.37 2.90
177 178 4.834496 GTCTCTCATGATCCCTCTCTCATT 59.166 45.833 0.00 0.00 29.74 2.57
178 179 6.009589 GTCTCTCATGATCCCTCTCTCATTA 58.990 44.000 0.00 0.00 29.74 1.90
179 180 6.664816 GTCTCTCATGATCCCTCTCTCATTAT 59.335 42.308 0.00 0.00 29.74 1.28
180 181 7.178983 GTCTCTCATGATCCCTCTCTCATTATT 59.821 40.741 0.00 0.00 29.74 1.40
181 182 7.733955 TCTCTCATGATCCCTCTCTCATTATTT 59.266 37.037 0.00 0.00 29.74 1.40
182 183 8.272659 TCTCATGATCCCTCTCTCATTATTTT 57.727 34.615 0.00 0.00 29.74 1.82
183 184 8.721479 TCTCATGATCCCTCTCTCATTATTTTT 58.279 33.333 0.00 0.00 29.74 1.94
184 185 8.915057 TCATGATCCCTCTCTCATTATTTTTC 57.085 34.615 0.00 0.00 29.74 2.29
185 186 7.941238 TCATGATCCCTCTCTCATTATTTTTCC 59.059 37.037 0.00 0.00 29.74 3.13
186 187 7.457380 TGATCCCTCTCTCATTATTTTTCCT 57.543 36.000 0.00 0.00 0.00 3.36
187 188 8.567198 TGATCCCTCTCTCATTATTTTTCCTA 57.433 34.615 0.00 0.00 0.00 2.94
188 189 9.175577 TGATCCCTCTCTCATTATTTTTCCTAT 57.824 33.333 0.00 0.00 0.00 2.57
189 190 9.447157 GATCCCTCTCTCATTATTTTTCCTATG 57.553 37.037 0.00 0.00 0.00 2.23
190 191 7.749666 TCCCTCTCTCATTATTTTTCCTATGG 58.250 38.462 0.00 0.00 0.00 2.74
191 192 6.432472 CCCTCTCTCATTATTTTTCCTATGGC 59.568 42.308 0.00 0.00 0.00 4.40
192 193 7.000472 CCTCTCTCATTATTTTTCCTATGGCA 59.000 38.462 0.00 0.00 0.00 4.92
193 194 7.668886 CCTCTCTCATTATTTTTCCTATGGCAT 59.331 37.037 4.88 4.88 0.00 4.40
194 195 8.400184 TCTCTCATTATTTTTCCTATGGCATG 57.600 34.615 10.98 0.00 0.00 4.06
195 196 6.985117 TCTCATTATTTTTCCTATGGCATGC 58.015 36.000 9.90 9.90 0.00 4.06
196 197 6.550481 TCTCATTATTTTTCCTATGGCATGCA 59.450 34.615 21.36 6.13 0.00 3.96
197 198 7.233962 TCTCATTATTTTTCCTATGGCATGCAT 59.766 33.333 21.36 13.33 0.00 3.96
198 199 7.156000 TCATTATTTTTCCTATGGCATGCATG 58.844 34.615 22.70 22.70 0.00 4.06
212 213 3.076278 CATGCACCCGGCCCAAAT 61.076 61.111 0.00 0.00 43.89 2.32
213 214 1.756172 CATGCACCCGGCCCAAATA 60.756 57.895 0.00 0.00 43.89 1.40
214 215 1.114722 CATGCACCCGGCCCAAATAT 61.115 55.000 0.00 0.00 43.89 1.28
215 216 0.827507 ATGCACCCGGCCCAAATATC 60.828 55.000 0.00 0.00 43.89 1.63
216 217 1.152756 GCACCCGGCCCAAATATCT 60.153 57.895 0.00 0.00 36.11 1.98
217 218 1.172812 GCACCCGGCCCAAATATCTC 61.173 60.000 0.00 0.00 36.11 2.75
218 219 0.474184 CACCCGGCCCAAATATCTCT 59.526 55.000 0.00 0.00 0.00 3.10
219 220 0.765510 ACCCGGCCCAAATATCTCTC 59.234 55.000 0.00 0.00 0.00 3.20
220 221 0.764890 CCCGGCCCAAATATCTCTCA 59.235 55.000 0.00 0.00 0.00 3.27
221 222 1.543429 CCCGGCCCAAATATCTCTCAC 60.543 57.143 0.00 0.00 0.00 3.51
222 223 1.140852 CCGGCCCAAATATCTCTCACA 59.859 52.381 0.00 0.00 0.00 3.58
223 224 2.487934 CGGCCCAAATATCTCTCACAG 58.512 52.381 0.00 0.00 0.00 3.66
224 225 2.225467 GGCCCAAATATCTCTCACAGC 58.775 52.381 0.00 0.00 0.00 4.40
225 226 2.225467 GCCCAAATATCTCTCACAGCC 58.775 52.381 0.00 0.00 0.00 4.85
226 227 2.856222 CCCAAATATCTCTCACAGCCC 58.144 52.381 0.00 0.00 0.00 5.19
227 228 2.441001 CCCAAATATCTCTCACAGCCCT 59.559 50.000 0.00 0.00 0.00 5.19
228 229 3.495806 CCCAAATATCTCTCACAGCCCTC 60.496 52.174 0.00 0.00 0.00 4.30
229 230 3.135348 CCAAATATCTCTCACAGCCCTCA 59.865 47.826 0.00 0.00 0.00 3.86
230 231 4.202440 CCAAATATCTCTCACAGCCCTCAT 60.202 45.833 0.00 0.00 0.00 2.90
231 232 5.374921 CAAATATCTCTCACAGCCCTCATT 58.625 41.667 0.00 0.00 0.00 2.57
232 233 5.643421 AATATCTCTCACAGCCCTCATTT 57.357 39.130 0.00 0.00 0.00 2.32
233 234 6.753913 AATATCTCTCACAGCCCTCATTTA 57.246 37.500 0.00 0.00 0.00 1.40
234 235 6.753913 ATATCTCTCACAGCCCTCATTTAA 57.246 37.500 0.00 0.00 0.00 1.52
235 236 5.643421 ATCTCTCACAGCCCTCATTTAAT 57.357 39.130 0.00 0.00 0.00 1.40
236 237 6.753913 ATCTCTCACAGCCCTCATTTAATA 57.246 37.500 0.00 0.00 0.00 0.98
237 238 6.753913 TCTCTCACAGCCCTCATTTAATAT 57.246 37.500 0.00 0.00 0.00 1.28
238 239 6.763355 TCTCTCACAGCCCTCATTTAATATC 58.237 40.000 0.00 0.00 0.00 1.63
239 240 6.556495 TCTCTCACAGCCCTCATTTAATATCT 59.444 38.462 0.00 0.00 0.00 1.98
240 241 6.763355 TCTCACAGCCCTCATTTAATATCTC 58.237 40.000 0.00 0.00 0.00 2.75
241 242 6.556495 TCTCACAGCCCTCATTTAATATCTCT 59.444 38.462 0.00 0.00 0.00 3.10
242 243 6.528321 TCACAGCCCTCATTTAATATCTCTG 58.472 40.000 0.00 0.00 0.00 3.35
243 244 6.327365 TCACAGCCCTCATTTAATATCTCTGA 59.673 38.462 0.00 0.00 0.00 3.27
244 245 6.426328 CACAGCCCTCATTTAATATCTCTGAC 59.574 42.308 0.00 0.00 0.00 3.51
245 246 6.100279 ACAGCCCTCATTTAATATCTCTGACA 59.900 38.462 0.00 0.00 0.00 3.58
246 247 7.166851 CAGCCCTCATTTAATATCTCTGACAT 58.833 38.462 0.00 0.00 0.00 3.06
247 248 7.119407 CAGCCCTCATTTAATATCTCTGACATG 59.881 40.741 0.00 0.00 0.00 3.21
248 249 6.128063 GCCCTCATTTAATATCTCTGACATGC 60.128 42.308 0.00 0.00 0.00 4.06
249 250 6.938596 CCCTCATTTAATATCTCTGACATGCA 59.061 38.462 0.00 0.00 0.00 3.96
250 251 7.610692 CCCTCATTTAATATCTCTGACATGCAT 59.389 37.037 0.00 0.00 0.00 3.96
251 252 8.451748 CCTCATTTAATATCTCTGACATGCATG 58.548 37.037 25.09 25.09 0.00 4.06
252 253 8.913487 TCATTTAATATCTCTGACATGCATGT 57.087 30.769 31.82 31.82 45.16 3.21
255 256 8.607441 TTTAATATCTCTGACATGCATGTACC 57.393 34.615 31.45 20.35 41.95 3.34
256 257 2.988010 TCTCTGACATGCATGTACCC 57.012 50.000 31.45 19.64 41.95 3.69
257 258 2.187100 TCTCTGACATGCATGTACCCA 58.813 47.619 31.45 22.91 41.95 4.51
258 259 2.571202 TCTCTGACATGCATGTACCCAA 59.429 45.455 31.45 14.85 41.95 4.12
259 260 2.679837 CTCTGACATGCATGTACCCAAC 59.320 50.000 31.45 18.22 41.95 3.77
260 261 2.039613 TCTGACATGCATGTACCCAACA 59.960 45.455 31.45 21.55 41.95 3.33
261 262 2.158559 TGACATGCATGTACCCAACAC 58.841 47.619 31.45 16.81 42.09 3.32
262 263 1.472480 GACATGCATGTACCCAACACC 59.528 52.381 31.45 12.53 42.09 4.16
263 264 1.202989 ACATGCATGTACCCAACACCA 60.203 47.619 30.50 0.00 42.09 4.17
264 265 2.101783 CATGCATGTACCCAACACCAT 58.898 47.619 18.91 0.00 42.09 3.55
265 266 1.832883 TGCATGTACCCAACACCATC 58.167 50.000 0.00 0.00 42.09 3.51
266 267 1.354031 TGCATGTACCCAACACCATCT 59.646 47.619 0.00 0.00 42.09 2.90
267 268 2.017049 GCATGTACCCAACACCATCTC 58.983 52.381 0.00 0.00 42.09 2.75
268 269 2.356125 GCATGTACCCAACACCATCTCT 60.356 50.000 0.00 0.00 42.09 3.10
269 270 3.535561 CATGTACCCAACACCATCTCTC 58.464 50.000 0.00 0.00 42.09 3.20
270 271 2.902608 TGTACCCAACACCATCTCTCT 58.097 47.619 0.00 0.00 31.43 3.10
271 272 2.832129 TGTACCCAACACCATCTCTCTC 59.168 50.000 0.00 0.00 31.43 3.20
272 273 2.030027 ACCCAACACCATCTCTCTCA 57.970 50.000 0.00 0.00 0.00 3.27
273 274 1.625818 ACCCAACACCATCTCTCTCAC 59.374 52.381 0.00 0.00 0.00 3.51
274 275 1.625315 CCCAACACCATCTCTCTCACA 59.375 52.381 0.00 0.00 0.00 3.58
275 276 2.038952 CCCAACACCATCTCTCTCACAA 59.961 50.000 0.00 0.00 0.00 3.33
276 277 3.332919 CCAACACCATCTCTCTCACAAG 58.667 50.000 0.00 0.00 0.00 3.16
277 278 2.740981 CAACACCATCTCTCTCACAAGC 59.259 50.000 0.00 0.00 0.00 4.01
278 279 2.255406 ACACCATCTCTCTCACAAGCT 58.745 47.619 0.00 0.00 0.00 3.74
279 280 2.233431 ACACCATCTCTCTCACAAGCTC 59.767 50.000 0.00 0.00 0.00 4.09
280 281 2.496871 CACCATCTCTCTCACAAGCTCT 59.503 50.000 0.00 0.00 0.00 4.09
281 282 2.760092 ACCATCTCTCTCACAAGCTCTC 59.240 50.000 0.00 0.00 0.00 3.20
282 283 3.025978 CCATCTCTCTCACAAGCTCTCT 58.974 50.000 0.00 0.00 0.00 3.10
283 284 3.067180 CCATCTCTCTCACAAGCTCTCTC 59.933 52.174 0.00 0.00 0.00 3.20
284 285 3.719268 TCTCTCTCACAAGCTCTCTCT 57.281 47.619 0.00 0.00 0.00 3.10
285 286 3.609853 TCTCTCTCACAAGCTCTCTCTC 58.390 50.000 0.00 0.00 0.00 3.20
286 287 3.264193 TCTCTCTCACAAGCTCTCTCTCT 59.736 47.826 0.00 0.00 0.00 3.10
287 288 4.012374 CTCTCTCACAAGCTCTCTCTCTT 58.988 47.826 0.00 0.00 0.00 2.85
288 289 5.045942 TCTCTCTCACAAGCTCTCTCTCTTA 60.046 44.000 0.00 0.00 0.00 2.10
289 290 5.185454 TCTCTCACAAGCTCTCTCTCTTAG 58.815 45.833 0.00 0.00 0.00 2.18
290 291 4.269183 TCTCACAAGCTCTCTCTCTTAGG 58.731 47.826 0.00 0.00 0.00 2.69
291 292 4.018870 TCTCACAAGCTCTCTCTCTTAGGA 60.019 45.833 0.00 0.00 0.00 2.94
292 293 4.269183 TCACAAGCTCTCTCTCTTAGGAG 58.731 47.826 0.00 0.00 40.73 3.69
293 294 3.023832 ACAAGCTCTCTCTCTTAGGAGC 58.976 50.000 5.77 5.77 43.42 4.70
296 297 2.654863 GCTCTCTCTCTTAGGAGCTGT 58.345 52.381 0.00 0.00 41.55 4.40
297 298 3.023832 GCTCTCTCTCTTAGGAGCTGTT 58.976 50.000 0.00 0.00 41.55 3.16
298 299 3.066760 GCTCTCTCTCTTAGGAGCTGTTC 59.933 52.174 0.00 0.00 41.55 3.18
299 300 3.275143 TCTCTCTCTTAGGAGCTGTTCG 58.725 50.000 0.00 0.00 39.31 3.95
300 301 3.055021 TCTCTCTCTTAGGAGCTGTTCGA 60.055 47.826 0.00 0.00 39.31 3.71
301 302 3.011119 TCTCTCTTAGGAGCTGTTCGAC 58.989 50.000 0.00 0.00 39.31 4.20
302 303 1.738350 TCTCTTAGGAGCTGTTCGACG 59.262 52.381 0.00 0.00 39.31 5.12
303 304 1.738350 CTCTTAGGAGCTGTTCGACGA 59.262 52.381 0.00 0.00 32.43 4.20
304 305 2.356382 CTCTTAGGAGCTGTTCGACGAT 59.644 50.000 0.00 0.00 32.43 3.73
305 306 2.355132 TCTTAGGAGCTGTTCGACGATC 59.645 50.000 0.00 0.00 0.00 3.69
306 307 1.022735 TAGGAGCTGTTCGACGATCC 58.977 55.000 0.00 1.92 0.00 3.36
307 308 0.681564 AGGAGCTGTTCGACGATCCT 60.682 55.000 10.49 10.49 32.31 3.24
308 309 0.248702 GGAGCTGTTCGACGATCCTC 60.249 60.000 0.00 1.29 0.00 3.71
309 310 0.248702 GAGCTGTTCGACGATCCTCC 60.249 60.000 0.00 0.00 0.00 4.30
310 311 0.965866 AGCTGTTCGACGATCCTCCA 60.966 55.000 0.00 0.00 0.00 3.86
311 312 0.526524 GCTGTTCGACGATCCTCCAG 60.527 60.000 0.00 1.89 0.00 3.86
312 313 0.526524 CTGTTCGACGATCCTCCAGC 60.527 60.000 0.00 0.00 0.00 4.85
313 314 0.965866 TGTTCGACGATCCTCCAGCT 60.966 55.000 0.00 0.00 0.00 4.24
314 315 0.248702 GTTCGACGATCCTCCAGCTC 60.249 60.000 0.00 0.00 0.00 4.09
315 316 1.384989 TTCGACGATCCTCCAGCTCC 61.385 60.000 0.00 0.00 0.00 4.70
316 317 2.851071 CGACGATCCTCCAGCTCCC 61.851 68.421 0.00 0.00 0.00 4.30
317 318 1.456705 GACGATCCTCCAGCTCCCT 60.457 63.158 0.00 0.00 0.00 4.20
318 319 1.743321 GACGATCCTCCAGCTCCCTG 61.743 65.000 0.00 0.00 38.85 4.45
319 320 1.456518 CGATCCTCCAGCTCCCTGA 60.457 63.158 0.00 0.00 41.77 3.86
320 321 1.045350 CGATCCTCCAGCTCCCTGAA 61.045 60.000 0.00 0.00 41.77 3.02
321 322 1.207791 GATCCTCCAGCTCCCTGAAA 58.792 55.000 0.00 0.00 41.77 2.69
322 323 1.773653 GATCCTCCAGCTCCCTGAAAT 59.226 52.381 0.00 0.00 41.77 2.17
323 324 1.207791 TCCTCCAGCTCCCTGAAATC 58.792 55.000 0.00 0.00 41.77 2.17
324 325 1.211456 CCTCCAGCTCCCTGAAATCT 58.789 55.000 0.00 0.00 41.77 2.40
325 326 1.134159 CCTCCAGCTCCCTGAAATCTG 60.134 57.143 0.00 0.00 41.77 2.90
326 327 1.836166 CTCCAGCTCCCTGAAATCTGA 59.164 52.381 0.00 0.00 41.77 3.27
327 328 1.836166 TCCAGCTCCCTGAAATCTGAG 59.164 52.381 0.00 0.00 41.77 3.35
328 329 1.836166 CCAGCTCCCTGAAATCTGAGA 59.164 52.381 0.00 0.00 41.77 3.27
329 330 2.238144 CCAGCTCCCTGAAATCTGAGAA 59.762 50.000 0.00 0.00 41.77 2.87
330 331 3.117963 CCAGCTCCCTGAAATCTGAGAAT 60.118 47.826 0.00 0.00 41.77 2.40
331 332 4.128643 CAGCTCCCTGAAATCTGAGAATC 58.871 47.826 0.00 0.00 41.77 2.52
332 333 4.039339 AGCTCCCTGAAATCTGAGAATCT 58.961 43.478 0.00 0.00 34.92 2.40
333 334 4.128643 GCTCCCTGAAATCTGAGAATCTG 58.871 47.826 0.00 0.00 34.92 2.90
334 335 4.383989 GCTCCCTGAAATCTGAGAATCTGT 60.384 45.833 0.00 0.00 35.36 3.41
335 336 5.095145 TCCCTGAAATCTGAGAATCTGTG 57.905 43.478 0.00 0.00 35.36 3.66
336 337 4.080695 TCCCTGAAATCTGAGAATCTGTGG 60.081 45.833 0.00 0.00 35.36 4.17
337 338 4.080695 CCCTGAAATCTGAGAATCTGTGGA 60.081 45.833 0.00 0.00 35.36 4.02
338 339 5.117584 CCTGAAATCTGAGAATCTGTGGAG 58.882 45.833 0.00 0.00 35.36 3.86
339 340 4.511527 TGAAATCTGAGAATCTGTGGAGC 58.488 43.478 0.00 0.00 35.36 4.70
340 341 4.224594 TGAAATCTGAGAATCTGTGGAGCT 59.775 41.667 0.00 0.00 35.36 4.09
341 342 3.823281 ATCTGAGAATCTGTGGAGCTG 57.177 47.619 0.00 0.00 35.36 4.24
342 343 1.206610 TCTGAGAATCTGTGGAGCTGC 59.793 52.381 0.00 0.00 35.36 5.25
343 344 0.251354 TGAGAATCTGTGGAGCTGCC 59.749 55.000 1.53 0.00 34.92 4.85
344 345 0.540923 GAGAATCTGTGGAGCTGCCT 59.459 55.000 1.53 0.00 37.63 4.75
345 346 0.990374 AGAATCTGTGGAGCTGCCTT 59.010 50.000 1.53 0.00 37.63 4.35
346 347 1.353694 AGAATCTGTGGAGCTGCCTTT 59.646 47.619 1.53 0.00 37.63 3.11
347 348 2.165998 GAATCTGTGGAGCTGCCTTTT 58.834 47.619 1.53 0.00 37.63 2.27
348 349 1.831580 ATCTGTGGAGCTGCCTTTTC 58.168 50.000 1.53 0.00 37.63 2.29
349 350 0.767375 TCTGTGGAGCTGCCTTTTCT 59.233 50.000 1.53 0.00 37.63 2.52
350 351 1.163554 CTGTGGAGCTGCCTTTTCTC 58.836 55.000 1.53 0.00 37.63 2.87
351 352 0.250901 TGTGGAGCTGCCTTTTCTCC 60.251 55.000 1.53 0.00 45.02 3.71
353 354 2.560954 GGAGCTGCCTTTTCTCCAC 58.439 57.895 0.00 0.00 44.38 4.02
354 355 0.037447 GGAGCTGCCTTTTCTCCACT 59.963 55.000 0.00 0.00 44.38 4.00
355 356 1.447945 GAGCTGCCTTTTCTCCACTC 58.552 55.000 0.00 0.00 0.00 3.51
356 357 0.037447 AGCTGCCTTTTCTCCACTCC 59.963 55.000 0.00 0.00 0.00 3.85
357 358 0.250901 GCTGCCTTTTCTCCACTCCA 60.251 55.000 0.00 0.00 0.00 3.86
358 359 1.528129 CTGCCTTTTCTCCACTCCAC 58.472 55.000 0.00 0.00 0.00 4.02
359 360 0.110486 TGCCTTTTCTCCACTCCACC 59.890 55.000 0.00 0.00 0.00 4.61
360 361 0.110486 GCCTTTTCTCCACTCCACCA 59.890 55.000 0.00 0.00 0.00 4.17
361 362 1.272147 GCCTTTTCTCCACTCCACCAT 60.272 52.381 0.00 0.00 0.00 3.55
362 363 2.819348 GCCTTTTCTCCACTCCACCATT 60.819 50.000 0.00 0.00 0.00 3.16
363 364 3.500343 CCTTTTCTCCACTCCACCATTT 58.500 45.455 0.00 0.00 0.00 2.32
364 365 3.897505 CCTTTTCTCCACTCCACCATTTT 59.102 43.478 0.00 0.00 0.00 1.82
365 366 4.344968 CCTTTTCTCCACTCCACCATTTTT 59.655 41.667 0.00 0.00 0.00 1.94
366 367 5.538433 CCTTTTCTCCACTCCACCATTTTTA 59.462 40.000 0.00 0.00 0.00 1.52
367 368 6.294731 CCTTTTCTCCACTCCACCATTTTTAG 60.295 42.308 0.00 0.00 0.00 1.85
368 369 3.686016 TCTCCACTCCACCATTTTTAGC 58.314 45.455 0.00 0.00 0.00 3.09
369 370 3.330701 TCTCCACTCCACCATTTTTAGCT 59.669 43.478 0.00 0.00 0.00 3.32
370 371 4.534500 TCTCCACTCCACCATTTTTAGCTA 59.466 41.667 0.00 0.00 0.00 3.32
371 372 4.585879 TCCACTCCACCATTTTTAGCTAC 58.414 43.478 0.00 0.00 0.00 3.58
372 373 4.042311 TCCACTCCACCATTTTTAGCTACA 59.958 41.667 0.00 0.00 0.00 2.74
373 374 4.396166 CCACTCCACCATTTTTAGCTACAG 59.604 45.833 0.00 0.00 0.00 2.74
374 375 4.010349 ACTCCACCATTTTTAGCTACAGC 58.990 43.478 0.00 0.00 42.49 4.40
385 386 3.145228 GCTACAGCTCCACCAACTC 57.855 57.895 0.00 0.00 38.21 3.01
386 387 0.391793 GCTACAGCTCCACCAACTCC 60.392 60.000 0.00 0.00 38.21 3.85
387 388 1.270907 CTACAGCTCCACCAACTCCT 58.729 55.000 0.00 0.00 0.00 3.69
388 389 0.976641 TACAGCTCCACCAACTCCTG 59.023 55.000 0.00 0.00 0.00 3.86
399 400 2.175878 CAACTCCTGGAGTGGACTTG 57.824 55.000 28.96 18.83 42.59 3.16
400 401 1.059913 AACTCCTGGAGTGGACTTGG 58.940 55.000 28.96 1.01 42.59 3.61
401 402 0.838122 ACTCCTGGAGTGGACTTGGG 60.838 60.000 27.85 0.00 41.76 4.12
402 403 1.538876 TCCTGGAGTGGACTTGGGG 60.539 63.158 0.00 0.00 0.00 4.96
403 404 1.538876 CCTGGAGTGGACTTGGGGA 60.539 63.158 0.00 0.00 0.00 4.81
404 405 1.557269 CCTGGAGTGGACTTGGGGAG 61.557 65.000 0.00 0.00 0.00 4.30
405 406 2.190488 CTGGAGTGGACTTGGGGAGC 62.190 65.000 0.00 0.00 0.00 4.70
406 407 2.266055 GAGTGGACTTGGGGAGCG 59.734 66.667 0.00 0.00 0.00 5.03
407 408 3.316573 GAGTGGACTTGGGGAGCGG 62.317 68.421 0.00 0.00 0.00 5.52
408 409 4.410400 GTGGACTTGGGGAGCGGG 62.410 72.222 0.00 0.00 0.00 6.13
409 410 4.649705 TGGACTTGGGGAGCGGGA 62.650 66.667 0.00 0.00 0.00 5.14
410 411 3.787001 GGACTTGGGGAGCGGGAG 61.787 72.222 0.00 0.00 0.00 4.30
411 412 2.683933 GACTTGGGGAGCGGGAGA 60.684 66.667 0.00 0.00 0.00 3.71
412 413 2.685380 ACTTGGGGAGCGGGAGAG 60.685 66.667 0.00 0.00 0.00 3.20
413 414 2.685380 CTTGGGGAGCGGGAGAGT 60.685 66.667 0.00 0.00 0.00 3.24
414 415 2.683933 TTGGGGAGCGGGAGAGTC 60.684 66.667 0.00 0.00 0.00 3.36
415 416 3.239627 TTGGGGAGCGGGAGAGTCT 62.240 63.158 0.00 0.00 0.00 3.24
416 417 2.835895 GGGGAGCGGGAGAGTCTC 60.836 72.222 12.01 12.01 0.00 3.36
426 427 0.963225 GGAGAGTCTCCGAATAGCCC 59.037 60.000 23.33 0.00 41.08 5.19
427 428 0.963225 GAGAGTCTCCGAATAGCCCC 59.037 60.000 9.15 0.00 0.00 5.80
428 429 0.558712 AGAGTCTCCGAATAGCCCCT 59.441 55.000 0.00 0.00 0.00 4.79
429 430 1.062810 AGAGTCTCCGAATAGCCCCTT 60.063 52.381 0.00 0.00 0.00 3.95
430 431 2.177233 AGAGTCTCCGAATAGCCCCTTA 59.823 50.000 0.00 0.00 0.00 2.69
431 432 3.166679 GAGTCTCCGAATAGCCCCTTAT 58.833 50.000 0.00 0.00 0.00 1.73
432 433 3.579151 GAGTCTCCGAATAGCCCCTTATT 59.421 47.826 0.00 0.00 0.00 1.40
433 434 4.748701 AGTCTCCGAATAGCCCCTTATTA 58.251 43.478 0.00 0.00 0.00 0.98
434 435 5.342866 AGTCTCCGAATAGCCCCTTATTAT 58.657 41.667 0.00 0.00 0.00 1.28
435 436 5.187967 AGTCTCCGAATAGCCCCTTATTATG 59.812 44.000 0.00 0.00 0.00 1.90
436 437 5.046520 GTCTCCGAATAGCCCCTTATTATGT 60.047 44.000 0.00 0.00 0.00 2.29
437 438 5.046591 TCTCCGAATAGCCCCTTATTATGTG 60.047 44.000 0.00 0.00 0.00 3.21
438 439 4.595781 TCCGAATAGCCCCTTATTATGTGT 59.404 41.667 0.00 0.00 0.00 3.72
439 440 5.072600 TCCGAATAGCCCCTTATTATGTGTT 59.927 40.000 0.00 0.00 0.00 3.32
440 441 5.181245 CCGAATAGCCCCTTATTATGTGTTG 59.819 44.000 0.00 0.00 0.00 3.33
441 442 5.334879 CGAATAGCCCCTTATTATGTGTTGC 60.335 44.000 0.00 0.00 0.00 4.17
442 443 2.297701 AGCCCCTTATTATGTGTTGCG 58.702 47.619 0.00 0.00 0.00 4.85
443 444 1.269051 GCCCCTTATTATGTGTTGCGC 60.269 52.381 0.00 0.00 0.00 6.09
444 445 2.297701 CCCCTTATTATGTGTTGCGCT 58.702 47.619 9.73 0.00 0.00 5.92
445 446 2.290641 CCCCTTATTATGTGTTGCGCTC 59.709 50.000 9.73 2.14 0.00 5.03
446 447 2.290641 CCCTTATTATGTGTTGCGCTCC 59.709 50.000 9.73 0.00 0.00 4.70
447 448 2.032894 CCTTATTATGTGTTGCGCTCCG 60.033 50.000 9.73 0.00 0.00 4.63
464 465 4.847255 GCAAATTGCGAGCGAGTT 57.153 50.000 0.90 0.00 31.71 3.01
465 466 2.342956 GCAAATTGCGAGCGAGTTG 58.657 52.632 17.98 17.98 38.14 3.16
466 467 2.342956 CAAATTGCGAGCGAGTTGC 58.657 52.632 11.75 0.00 46.98 4.17
468 469 0.523072 AAATTGCGAGCGAGTTGCAT 59.477 45.000 4.86 0.00 45.58 3.96
469 470 0.179181 AATTGCGAGCGAGTTGCATG 60.179 50.000 4.86 0.00 45.58 4.06
470 471 1.985447 ATTGCGAGCGAGTTGCATGG 61.985 55.000 4.86 0.00 45.58 3.66
475 476 2.180017 GCGAGTTGCATGGCTTGG 59.820 61.111 0.00 0.00 45.45 3.61
476 477 2.629656 GCGAGTTGCATGGCTTGGT 61.630 57.895 0.00 0.00 45.45 3.67
477 478 1.210931 CGAGTTGCATGGCTTGGTG 59.789 57.895 2.33 0.00 0.00 4.17
478 479 1.588082 GAGTTGCATGGCTTGGTGG 59.412 57.895 2.33 0.00 0.00 4.61
479 480 2.047939 GTTGCATGGCTTGGTGGC 60.048 61.111 2.33 0.00 42.18 5.01
485 486 3.089838 TGGCTTGGTGGCATAGCT 58.910 55.556 15.57 0.00 46.76 3.32
486 487 1.378911 TGGCTTGGTGGCATAGCTG 60.379 57.895 15.57 0.00 46.76 4.24
504 505 3.732470 CGGCCCGCCTTAGAATTC 58.268 61.111 3.84 0.00 0.00 2.17
505 506 1.153249 CGGCCCGCCTTAGAATTCA 60.153 57.895 8.44 0.00 0.00 2.57
506 507 1.436983 CGGCCCGCCTTAGAATTCAC 61.437 60.000 8.44 0.00 0.00 3.18
507 508 0.393808 GGCCCGCCTTAGAATTCACA 60.394 55.000 8.44 0.00 0.00 3.58
508 509 0.733150 GCCCGCCTTAGAATTCACAC 59.267 55.000 8.44 0.00 0.00 3.82
509 510 1.948611 GCCCGCCTTAGAATTCACACA 60.949 52.381 8.44 0.00 0.00 3.72
510 511 2.643551 CCCGCCTTAGAATTCACACAT 58.356 47.619 8.44 0.00 0.00 3.21
511 512 3.804036 CCCGCCTTAGAATTCACACATA 58.196 45.455 8.44 0.00 0.00 2.29
512 513 3.560068 CCCGCCTTAGAATTCACACATAC 59.440 47.826 8.44 0.00 0.00 2.39
513 514 4.188462 CCGCCTTAGAATTCACACATACA 58.812 43.478 8.44 0.00 0.00 2.29
514 515 4.034048 CCGCCTTAGAATTCACACATACAC 59.966 45.833 8.44 0.00 0.00 2.90
515 516 4.629634 CGCCTTAGAATTCACACATACACA 59.370 41.667 8.44 0.00 0.00 3.72
516 517 5.121611 CGCCTTAGAATTCACACATACACAA 59.878 40.000 8.44 0.00 0.00 3.33
517 518 6.348132 CGCCTTAGAATTCACACATACACAAA 60.348 38.462 8.44 0.00 0.00 2.83
518 519 7.367285 GCCTTAGAATTCACACATACACAAAA 58.633 34.615 8.44 0.00 0.00 2.44
519 520 7.538678 GCCTTAGAATTCACACATACACAAAAG 59.461 37.037 8.44 0.00 0.00 2.27
520 521 8.567948 CCTTAGAATTCACACATACACAAAAGT 58.432 33.333 8.44 0.00 0.00 2.66
521 522 9.385902 CTTAGAATTCACACATACACAAAAGTG 57.614 33.333 8.44 0.00 37.95 3.16
522 523 7.566760 AGAATTCACACATACACAAAAGTGA 57.433 32.000 8.44 0.00 35.97 3.41
523 524 7.417612 AGAATTCACACATACACAAAAGTGAC 58.582 34.615 8.44 0.00 35.92 3.67
524 525 6.942532 ATTCACACATACACAAAAGTGACT 57.057 33.333 2.22 0.00 35.92 3.41
525 526 5.733226 TCACACATACACAAAAGTGACTG 57.267 39.130 2.22 2.33 35.97 3.51
526 527 5.423886 TCACACATACACAAAAGTGACTGA 58.576 37.500 2.22 0.00 35.97 3.41
527 528 6.054941 TCACACATACACAAAAGTGACTGAT 58.945 36.000 2.22 0.00 35.97 2.90
528 529 6.202762 TCACACATACACAAAAGTGACTGATC 59.797 38.462 2.22 0.00 35.97 2.92
529 530 5.470098 ACACATACACAAAAGTGACTGATCC 59.530 40.000 2.22 0.00 35.97 3.36
530 531 4.690748 ACATACACAAAAGTGACTGATCCG 59.309 41.667 2.22 0.00 0.00 4.18
531 532 3.469008 ACACAAAAGTGACTGATCCGA 57.531 42.857 2.22 0.00 0.00 4.55
532 533 3.804036 ACACAAAAGTGACTGATCCGAA 58.196 40.909 2.22 0.00 0.00 4.30
533 534 4.389374 ACACAAAAGTGACTGATCCGAAT 58.611 39.130 2.22 0.00 0.00 3.34
534 535 5.547465 ACACAAAAGTGACTGATCCGAATA 58.453 37.500 2.22 0.00 0.00 1.75
535 536 6.173339 ACACAAAAGTGACTGATCCGAATAT 58.827 36.000 2.22 0.00 0.00 1.28
536 537 6.092670 ACACAAAAGTGACTGATCCGAATATG 59.907 38.462 2.22 0.00 0.00 1.78
537 538 6.313658 CACAAAAGTGACTGATCCGAATATGA 59.686 38.462 0.00 0.00 0.00 2.15
538 539 7.011763 CACAAAAGTGACTGATCCGAATATGAT 59.988 37.037 0.00 0.00 0.00 2.45
539 540 7.554118 ACAAAAGTGACTGATCCGAATATGATT 59.446 33.333 0.00 0.00 0.00 2.57
540 541 8.400947 CAAAAGTGACTGATCCGAATATGATTT 58.599 33.333 0.00 0.00 0.00 2.17
541 542 8.511604 AAAGTGACTGATCCGAATATGATTTT 57.488 30.769 0.00 0.00 0.00 1.82
542 543 7.721286 AGTGACTGATCCGAATATGATTTTC 57.279 36.000 0.00 0.00 0.00 2.29
543 544 7.275183 AGTGACTGATCCGAATATGATTTTCA 58.725 34.615 0.00 0.00 0.00 2.69
544 545 7.440556 AGTGACTGATCCGAATATGATTTTCAG 59.559 37.037 0.00 0.00 0.00 3.02
545 546 7.225538 GTGACTGATCCGAATATGATTTTCAGT 59.774 37.037 9.41 9.41 37.41 3.41
546 547 7.439356 TGACTGATCCGAATATGATTTTCAGTC 59.561 37.037 20.60 20.60 45.91 3.51
547 548 6.422100 ACTGATCCGAATATGATTTTCAGTCG 59.578 38.462 0.00 0.00 32.42 4.18
548 549 6.512297 TGATCCGAATATGATTTTCAGTCGA 58.488 36.000 8.65 0.00 33.61 4.20
549 550 7.154656 TGATCCGAATATGATTTTCAGTCGAT 58.845 34.615 0.00 0.00 33.61 3.59
550 551 7.657354 TGATCCGAATATGATTTTCAGTCGATT 59.343 33.333 0.00 0.00 33.61 3.34
551 552 7.177498 TCCGAATATGATTTTCAGTCGATTG 57.823 36.000 0.68 0.68 33.61 2.67
552 553 6.983890 TCCGAATATGATTTTCAGTCGATTGA 59.016 34.615 6.51 6.51 33.61 2.57
553 554 7.042725 TCCGAATATGATTTTCAGTCGATTGAC 60.043 37.037 10.49 4.78 45.86 3.18
743 746 1.342076 ACGGGTCTGCATCTAGGAAGA 60.342 52.381 0.00 0.00 35.80 2.87
744 747 1.757118 CGGGTCTGCATCTAGGAAGAA 59.243 52.381 0.00 0.00 34.73 2.52
745 748 2.223923 CGGGTCTGCATCTAGGAAGAAG 60.224 54.545 0.00 0.00 34.73 2.85
746 749 2.484594 GGGTCTGCATCTAGGAAGAAGC 60.485 54.545 0.00 0.00 44.80 3.86
747 750 2.433970 GGTCTGCATCTAGGAAGAAGCT 59.566 50.000 4.50 0.00 44.82 3.74
748 751 3.456280 GTCTGCATCTAGGAAGAAGCTG 58.544 50.000 4.50 4.20 44.82 4.24
749 752 3.102972 TCTGCATCTAGGAAGAAGCTGT 58.897 45.455 4.50 0.00 44.82 4.40
750 753 3.118847 TCTGCATCTAGGAAGAAGCTGTG 60.119 47.826 4.50 0.00 44.82 3.66
751 754 2.093288 TGCATCTAGGAAGAAGCTGTGG 60.093 50.000 4.50 0.00 44.82 4.17
752 755 2.559440 CATCTAGGAAGAAGCTGTGGC 58.441 52.381 0.00 0.00 34.73 5.01
921 941 4.172512 CTGCGAGGGGAGCTGCAT 62.173 66.667 7.79 0.00 36.64 3.96
1199 2583 2.196749 CCAACGAGTGATTCCTGATCG 58.803 52.381 0.00 0.00 37.60 3.69
1256 2640 1.921230 GCTAGAGAACGCTTCCGAAAG 59.079 52.381 0.00 0.00 38.29 2.62
1429 7147 9.274065 CTGTCGATATGCATCAATCATTAAATG 57.726 33.333 0.19 0.00 0.00 2.32
1679 10376 0.881796 GAGGTAACCAGCTTGGCAAC 59.118 55.000 0.00 0.00 42.67 4.17
1751 10511 6.095300 CCTTGACTATGTCATTTTGCCATGTA 59.905 38.462 1.05 0.00 42.40 2.29
1752 10512 7.201848 CCTTGACTATGTCATTTTGCCATGTAT 60.202 37.037 1.05 0.00 42.40 2.29
1788 10548 3.134081 GCTGGTACCCTGTTGCTAAGATA 59.866 47.826 10.07 0.00 0.00 1.98
2010 10819 1.437160 CTTGTGTGTTGGTGGTGGC 59.563 57.895 0.00 0.00 0.00 5.01
2375 11235 3.880033 AAGCTGGGGTGGAGCTCCT 62.880 63.158 32.28 7.74 46.32 3.69
2389 11249 1.920325 CTCCTGGCCACTGAGGGAA 60.920 63.158 16.62 1.20 38.09 3.97
2655 11516 0.587768 TCACACGCACAATGCTCAAG 59.412 50.000 0.00 0.00 42.25 3.02
2665 11526 2.490903 ACAATGCTCAAGAGGAACATGC 59.509 45.455 0.00 0.00 32.75 4.06
2668 11529 1.372087 GCTCAAGAGGAACATGCCCG 61.372 60.000 0.00 0.00 0.00 6.13
2829 11690 1.347707 GTCAGGGGTGAACATCAGACA 59.652 52.381 0.00 0.00 0.00 3.41
2932 11793 1.946081 TGACAAATCAAGCGCTGACAA 59.054 42.857 12.58 0.00 36.69 3.18
2933 11794 2.031769 TGACAAATCAAGCGCTGACAAG 60.032 45.455 12.58 2.15 36.69 3.16
3404 12273 0.613292 AGAGACGGTCCACAGCTCAT 60.613 55.000 4.14 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.374838 ACGAGTCTTTCTGAAAACTACTAAAAA 57.625 29.630 13.89 0.00 0.00 1.94
36 37 8.814235 CACGAGTCTTTCTGAAAACTACTAAAA 58.186 33.333 13.89 0.00 0.00 1.52
37 38 7.042925 GCACGAGTCTTTCTGAAAACTACTAAA 60.043 37.037 13.89 0.00 0.00 1.85
38 39 6.420008 GCACGAGTCTTTCTGAAAACTACTAA 59.580 38.462 13.89 0.00 0.00 2.24
39 40 5.919141 GCACGAGTCTTTCTGAAAACTACTA 59.081 40.000 13.89 0.00 0.00 1.82
40 41 4.745620 GCACGAGTCTTTCTGAAAACTACT 59.254 41.667 13.89 12.25 0.00 2.57
41 42 4.084485 GGCACGAGTCTTTCTGAAAACTAC 60.084 45.833 13.89 8.84 0.00 2.73
42 43 4.056050 GGCACGAGTCTTTCTGAAAACTA 58.944 43.478 13.89 0.00 0.00 2.24
43 44 2.872858 GGCACGAGTCTTTCTGAAAACT 59.127 45.455 13.83 13.83 0.00 2.66
44 45 3.254827 GGCACGAGTCTTTCTGAAAAC 57.745 47.619 4.18 5.96 0.00 2.43
70 71 3.563808 CGGTTCACATGAGGACAGAAAAA 59.436 43.478 0.00 0.00 0.00 1.94
71 72 3.138304 CGGTTCACATGAGGACAGAAAA 58.862 45.455 0.00 0.00 0.00 2.29
72 73 2.766313 CGGTTCACATGAGGACAGAAA 58.234 47.619 0.00 0.00 0.00 2.52
73 74 1.608025 GCGGTTCACATGAGGACAGAA 60.608 52.381 5.92 0.00 0.00 3.02
74 75 0.037326 GCGGTTCACATGAGGACAGA 60.037 55.000 5.92 0.00 0.00 3.41
75 76 0.036952 AGCGGTTCACATGAGGACAG 60.037 55.000 0.00 0.00 0.00 3.51
76 77 1.262417 TAGCGGTTCACATGAGGACA 58.738 50.000 0.00 0.00 0.00 4.02
77 78 2.380084 TTAGCGGTTCACATGAGGAC 57.620 50.000 0.00 0.00 0.00 3.85
78 79 2.301870 ACTTTAGCGGTTCACATGAGGA 59.698 45.455 0.00 0.00 0.00 3.71
79 80 2.673368 GACTTTAGCGGTTCACATGAGG 59.327 50.000 0.00 0.00 0.00 3.86
80 81 3.325870 TGACTTTAGCGGTTCACATGAG 58.674 45.455 0.00 0.00 0.00 2.90
81 82 3.394674 TGACTTTAGCGGTTCACATGA 57.605 42.857 0.00 0.00 0.00 3.07
82 83 4.481930 TTTGACTTTAGCGGTTCACATG 57.518 40.909 0.00 0.00 0.00 3.21
83 84 4.553938 CGTTTTGACTTTAGCGGTTCACAT 60.554 41.667 0.00 0.00 0.00 3.21
84 85 3.242478 CGTTTTGACTTTAGCGGTTCACA 60.242 43.478 0.00 0.00 0.00 3.58
85 86 3.285745 CGTTTTGACTTTAGCGGTTCAC 58.714 45.455 0.00 0.00 0.00 3.18
86 87 2.288458 CCGTTTTGACTTTAGCGGTTCA 59.712 45.455 0.00 0.00 35.11 3.18
87 88 2.912366 CCGTTTTGACTTTAGCGGTTC 58.088 47.619 0.00 0.00 35.11 3.62
89 90 1.957668 ACCGTTTTGACTTTAGCGGT 58.042 45.000 0.00 0.00 46.14 5.68
90 91 3.680937 TGATACCGTTTTGACTTTAGCGG 59.319 43.478 0.00 0.00 44.10 5.52
91 92 4.914312 TGATACCGTTTTGACTTTAGCG 57.086 40.909 0.00 0.00 0.00 4.26
92 93 7.064728 AGAGAATGATACCGTTTTGACTTTAGC 59.935 37.037 0.00 0.00 0.00 3.09
93 94 8.480643 AGAGAATGATACCGTTTTGACTTTAG 57.519 34.615 0.00 0.00 0.00 1.85
94 95 8.092068 TGAGAGAATGATACCGTTTTGACTTTA 58.908 33.333 0.00 0.00 0.00 1.85
95 96 6.934645 TGAGAGAATGATACCGTTTTGACTTT 59.065 34.615 0.00 0.00 0.00 2.66
96 97 6.464222 TGAGAGAATGATACCGTTTTGACTT 58.536 36.000 0.00 0.00 0.00 3.01
97 98 6.037786 TGAGAGAATGATACCGTTTTGACT 57.962 37.500 0.00 0.00 0.00 3.41
98 99 6.910536 ATGAGAGAATGATACCGTTTTGAC 57.089 37.500 0.00 0.00 0.00 3.18
99 100 9.443323 TTTTATGAGAGAATGATACCGTTTTGA 57.557 29.630 0.00 0.00 0.00 2.69
104 105 9.838339 AGAAATTTTATGAGAGAATGATACCGT 57.162 29.630 0.00 0.00 0.00 4.83
110 111 9.948964 TGACAGAGAAATTTTATGAGAGAATGA 57.051 29.630 0.00 0.00 0.00 2.57
113 114 8.671921 GCATGACAGAGAAATTTTATGAGAGAA 58.328 33.333 0.00 0.00 0.00 2.87
114 115 7.825761 TGCATGACAGAGAAATTTTATGAGAGA 59.174 33.333 0.00 0.00 0.00 3.10
115 116 7.982224 TGCATGACAGAGAAATTTTATGAGAG 58.018 34.615 0.00 0.00 0.00 3.20
116 117 7.926674 TGCATGACAGAGAAATTTTATGAGA 57.073 32.000 0.00 0.00 0.00 3.27
117 118 7.167635 GCATGCATGACAGAGAAATTTTATGAG 59.832 37.037 30.64 0.00 0.00 2.90
118 119 6.976349 GCATGCATGACAGAGAAATTTTATGA 59.024 34.615 30.64 0.00 0.00 2.15
119 120 6.754675 TGCATGCATGACAGAGAAATTTTATG 59.245 34.615 30.64 0.00 0.00 1.90
120 121 6.755141 GTGCATGCATGACAGAGAAATTTTAT 59.245 34.615 30.64 0.00 0.00 1.40
121 122 6.094719 GTGCATGCATGACAGAGAAATTTTA 58.905 36.000 30.64 0.00 0.00 1.52
122 123 4.927425 GTGCATGCATGACAGAGAAATTTT 59.073 37.500 30.64 0.00 0.00 1.82
123 124 4.491676 GTGCATGCATGACAGAGAAATTT 58.508 39.130 30.64 0.00 0.00 1.82
124 125 3.427098 CGTGCATGCATGACAGAGAAATT 60.427 43.478 31.95 0.00 35.09 1.82
125 126 2.096980 CGTGCATGCATGACAGAGAAAT 59.903 45.455 31.95 0.00 35.09 2.17
126 127 1.465777 CGTGCATGCATGACAGAGAAA 59.534 47.619 31.95 0.00 35.09 2.52
127 128 1.081094 CGTGCATGCATGACAGAGAA 58.919 50.000 31.95 0.00 35.09 2.87
128 129 1.363885 GCGTGCATGCATGACAGAGA 61.364 55.000 37.79 4.13 35.09 3.10
129 130 1.062047 GCGTGCATGCATGACAGAG 59.938 57.895 37.79 21.05 35.09 3.35
130 131 1.671704 TGCGTGCATGCATGACAGA 60.672 52.632 37.79 18.09 40.62 3.41
131 132 2.871828 TGCGTGCATGCATGACAG 59.128 55.556 37.79 20.87 40.62 3.51
138 139 1.226211 GACACTGATGCGTGCATGC 60.226 57.895 24.20 24.20 38.45 4.06
139 140 0.372679 GAGACACTGATGCGTGCATG 59.627 55.000 12.81 0.09 38.45 4.06
140 141 0.248565 AGAGACACTGATGCGTGCAT 59.751 50.000 7.12 7.12 38.45 3.96
141 142 0.389037 GAGAGACACTGATGCGTGCA 60.389 55.000 0.00 0.00 38.45 4.57
142 143 0.389037 TGAGAGACACTGATGCGTGC 60.389 55.000 0.00 0.00 38.45 5.34
143 144 1.925185 CATGAGAGACACTGATGCGTG 59.075 52.381 0.00 0.00 40.67 5.34
144 145 1.821136 TCATGAGAGACACTGATGCGT 59.179 47.619 0.00 0.00 39.46 5.24
145 146 2.573941 TCATGAGAGACACTGATGCG 57.426 50.000 0.00 0.00 39.46 4.73
146 147 3.391965 GGATCATGAGAGACACTGATGC 58.608 50.000 0.09 0.00 39.46 3.91
147 148 3.642377 AGGGATCATGAGAGACACTGATG 59.358 47.826 0.09 0.00 40.63 3.07
148 149 3.896888 GAGGGATCATGAGAGACACTGAT 59.103 47.826 0.09 0.00 33.19 2.90
149 150 3.053019 AGAGGGATCATGAGAGACACTGA 60.053 47.826 0.09 0.00 0.00 3.41
150 151 3.298619 AGAGGGATCATGAGAGACACTG 58.701 50.000 0.09 0.00 0.00 3.66
151 152 3.205056 AGAGAGGGATCATGAGAGACACT 59.795 47.826 0.09 0.00 0.00 3.55
152 153 3.565307 AGAGAGGGATCATGAGAGACAC 58.435 50.000 0.09 0.00 0.00 3.67
153 154 3.203934 TGAGAGAGGGATCATGAGAGACA 59.796 47.826 0.09 0.00 0.00 3.41
154 155 3.831323 TGAGAGAGGGATCATGAGAGAC 58.169 50.000 0.09 0.00 0.00 3.36
155 156 4.745484 ATGAGAGAGGGATCATGAGAGA 57.255 45.455 0.09 0.00 34.88 3.10
156 157 7.484993 AATAATGAGAGAGGGATCATGAGAG 57.515 40.000 0.09 0.00 36.31 3.20
157 158 7.868792 AAATAATGAGAGAGGGATCATGAGA 57.131 36.000 0.09 0.00 36.31 3.27
158 159 8.921353 AAAAATAATGAGAGAGGGATCATGAG 57.079 34.615 0.09 0.00 36.31 2.90
159 160 7.941238 GGAAAAATAATGAGAGAGGGATCATGA 59.059 37.037 0.00 0.00 36.31 3.07
160 161 7.943447 AGGAAAAATAATGAGAGAGGGATCATG 59.057 37.037 0.00 0.00 36.31 3.07
161 162 8.054931 AGGAAAAATAATGAGAGAGGGATCAT 57.945 34.615 0.00 0.00 37.77 2.45
162 163 7.457380 AGGAAAAATAATGAGAGAGGGATCA 57.543 36.000 0.00 0.00 0.00 2.92
163 164 9.447157 CATAGGAAAAATAATGAGAGAGGGATC 57.553 37.037 0.00 0.00 0.00 3.36
164 165 8.389366 CCATAGGAAAAATAATGAGAGAGGGAT 58.611 37.037 0.00 0.00 0.00 3.85
165 166 7.692789 GCCATAGGAAAAATAATGAGAGAGGGA 60.693 40.741 0.00 0.00 0.00 4.20
166 167 6.432472 GCCATAGGAAAAATAATGAGAGAGGG 59.568 42.308 0.00 0.00 0.00 4.30
167 168 7.000472 TGCCATAGGAAAAATAATGAGAGAGG 59.000 38.462 0.00 0.00 0.00 3.69
168 169 8.512956 CATGCCATAGGAAAAATAATGAGAGAG 58.487 37.037 0.00 0.00 0.00 3.20
169 170 7.040201 GCATGCCATAGGAAAAATAATGAGAGA 60.040 37.037 6.36 0.00 0.00 3.10
170 171 7.088905 GCATGCCATAGGAAAAATAATGAGAG 58.911 38.462 6.36 0.00 0.00 3.20
171 172 6.550481 TGCATGCCATAGGAAAAATAATGAGA 59.450 34.615 16.68 0.00 0.00 3.27
172 173 6.751157 TGCATGCCATAGGAAAAATAATGAG 58.249 36.000 16.68 0.00 0.00 2.90
173 174 6.728089 TGCATGCCATAGGAAAAATAATGA 57.272 33.333 16.68 0.00 0.00 2.57
174 175 7.359262 CATGCATGCCATAGGAAAAATAATG 57.641 36.000 14.93 2.83 31.47 1.90
195 196 1.114722 ATATTTGGGCCGGGTGCATG 61.115 55.000 2.18 0.00 43.89 4.06
196 197 0.827507 GATATTTGGGCCGGGTGCAT 60.828 55.000 2.18 0.00 43.89 3.96
197 198 1.454847 GATATTTGGGCCGGGTGCA 60.455 57.895 2.18 0.00 43.89 4.57
198 199 1.152756 AGATATTTGGGCCGGGTGC 60.153 57.895 2.18 0.00 40.16 5.01
199 200 0.474184 AGAGATATTTGGGCCGGGTG 59.526 55.000 2.18 0.00 0.00 4.61
200 201 0.765510 GAGAGATATTTGGGCCGGGT 59.234 55.000 2.18 0.00 0.00 5.28
201 202 0.764890 TGAGAGATATTTGGGCCGGG 59.235 55.000 2.18 0.00 0.00 5.73
202 203 1.140852 TGTGAGAGATATTTGGGCCGG 59.859 52.381 0.00 0.00 0.00 6.13
203 204 2.487934 CTGTGAGAGATATTTGGGCCG 58.512 52.381 0.00 0.00 0.00 6.13
204 205 2.225467 GCTGTGAGAGATATTTGGGCC 58.775 52.381 0.00 0.00 0.00 5.80
205 206 2.225467 GGCTGTGAGAGATATTTGGGC 58.775 52.381 0.00 0.00 0.00 5.36
206 207 2.441001 AGGGCTGTGAGAGATATTTGGG 59.559 50.000 0.00 0.00 0.00 4.12
207 208 3.135348 TGAGGGCTGTGAGAGATATTTGG 59.865 47.826 0.00 0.00 0.00 3.28
208 209 4.412796 TGAGGGCTGTGAGAGATATTTG 57.587 45.455 0.00 0.00 0.00 2.32
209 210 5.643421 AATGAGGGCTGTGAGAGATATTT 57.357 39.130 0.00 0.00 0.00 1.40
210 211 5.643421 AAATGAGGGCTGTGAGAGATATT 57.357 39.130 0.00 0.00 0.00 1.28
211 212 6.753913 TTAAATGAGGGCTGTGAGAGATAT 57.246 37.500 0.00 0.00 0.00 1.63
212 213 6.753913 ATTAAATGAGGGCTGTGAGAGATA 57.246 37.500 0.00 0.00 0.00 1.98
213 214 5.643421 ATTAAATGAGGGCTGTGAGAGAT 57.357 39.130 0.00 0.00 0.00 2.75
214 215 6.556495 AGATATTAAATGAGGGCTGTGAGAGA 59.444 38.462 0.00 0.00 0.00 3.10
215 216 6.767456 AGATATTAAATGAGGGCTGTGAGAG 58.233 40.000 0.00 0.00 0.00 3.20
216 217 6.556495 AGAGATATTAAATGAGGGCTGTGAGA 59.444 38.462 0.00 0.00 0.00 3.27
217 218 6.649973 CAGAGATATTAAATGAGGGCTGTGAG 59.350 42.308 0.00 0.00 0.00 3.51
218 219 6.327365 TCAGAGATATTAAATGAGGGCTGTGA 59.673 38.462 0.00 0.00 0.00 3.58
219 220 6.426328 GTCAGAGATATTAAATGAGGGCTGTG 59.574 42.308 0.00 0.00 0.00 3.66
220 221 6.100279 TGTCAGAGATATTAAATGAGGGCTGT 59.900 38.462 0.00 0.00 0.00 4.40
221 222 6.528321 TGTCAGAGATATTAAATGAGGGCTG 58.472 40.000 0.00 0.00 0.00 4.85
222 223 6.753913 TGTCAGAGATATTAAATGAGGGCT 57.246 37.500 0.00 0.00 0.00 5.19
223 224 6.128063 GCATGTCAGAGATATTAAATGAGGGC 60.128 42.308 0.00 0.00 0.00 5.19
224 225 6.938596 TGCATGTCAGAGATATTAAATGAGGG 59.061 38.462 0.00 0.00 0.00 4.30
225 226 7.974482 TGCATGTCAGAGATATTAAATGAGG 57.026 36.000 0.00 0.00 0.00 3.86
226 227 9.000486 ACATGCATGTCAGAGATATTAAATGAG 58.000 33.333 26.61 0.00 35.87 2.90
227 228 8.913487 ACATGCATGTCAGAGATATTAAATGA 57.087 30.769 26.61 0.00 35.87 2.57
229 230 9.224267 GGTACATGCATGTCAGAGATATTAAAT 57.776 33.333 34.54 8.01 41.97 1.40
230 231 7.661437 GGGTACATGCATGTCAGAGATATTAAA 59.339 37.037 34.54 10.71 41.97 1.52
231 232 7.161404 GGGTACATGCATGTCAGAGATATTAA 58.839 38.462 34.54 10.92 41.97 1.40
232 233 6.269769 TGGGTACATGCATGTCAGAGATATTA 59.730 38.462 34.54 11.46 41.97 0.98
233 234 5.072193 TGGGTACATGCATGTCAGAGATATT 59.928 40.000 34.54 9.86 41.97 1.28
234 235 4.594491 TGGGTACATGCATGTCAGAGATAT 59.406 41.667 34.54 10.62 41.97 1.63
235 236 3.966665 TGGGTACATGCATGTCAGAGATA 59.033 43.478 34.54 13.77 41.97 1.98
236 237 2.773661 TGGGTACATGCATGTCAGAGAT 59.226 45.455 34.54 12.12 41.97 2.75
237 238 2.187100 TGGGTACATGCATGTCAGAGA 58.813 47.619 34.54 15.32 41.97 3.10
238 239 2.679837 GTTGGGTACATGCATGTCAGAG 59.320 50.000 34.54 6.77 41.97 3.35
239 240 2.039613 TGTTGGGTACATGCATGTCAGA 59.960 45.455 34.54 16.11 41.97 3.27
240 241 2.162208 GTGTTGGGTACATGCATGTCAG 59.838 50.000 34.54 7.99 41.97 3.51
241 242 2.158559 GTGTTGGGTACATGCATGTCA 58.841 47.619 34.54 23.40 41.97 3.58
242 243 1.472480 GGTGTTGGGTACATGCATGTC 59.528 52.381 34.54 23.95 41.97 3.06
243 244 1.202989 TGGTGTTGGGTACATGCATGT 60.203 47.619 33.20 33.20 44.48 3.21
244 245 1.543607 TGGTGTTGGGTACATGCATG 58.456 50.000 25.09 25.09 39.39 4.06
245 246 2.025037 AGATGGTGTTGGGTACATGCAT 60.025 45.455 0.00 0.00 39.39 3.96
246 247 1.354031 AGATGGTGTTGGGTACATGCA 59.646 47.619 0.00 0.00 39.39 3.96
247 248 2.017049 GAGATGGTGTTGGGTACATGC 58.983 52.381 0.00 0.00 39.39 4.06
248 249 3.198635 AGAGAGATGGTGTTGGGTACATG 59.801 47.826 0.00 0.00 39.39 3.21
249 250 3.452627 GAGAGAGATGGTGTTGGGTACAT 59.547 47.826 0.00 0.00 39.39 2.29
250 251 2.832129 GAGAGAGATGGTGTTGGGTACA 59.168 50.000 0.00 0.00 0.00 2.90
251 252 2.832129 TGAGAGAGATGGTGTTGGGTAC 59.168 50.000 0.00 0.00 0.00 3.34
252 253 2.832129 GTGAGAGAGATGGTGTTGGGTA 59.168 50.000 0.00 0.00 0.00 3.69
253 254 1.625818 GTGAGAGAGATGGTGTTGGGT 59.374 52.381 0.00 0.00 0.00 4.51
254 255 1.625315 TGTGAGAGAGATGGTGTTGGG 59.375 52.381 0.00 0.00 0.00 4.12
255 256 3.332919 CTTGTGAGAGAGATGGTGTTGG 58.667 50.000 0.00 0.00 0.00 3.77
256 257 2.740981 GCTTGTGAGAGAGATGGTGTTG 59.259 50.000 0.00 0.00 0.00 3.33
257 258 2.636893 AGCTTGTGAGAGAGATGGTGTT 59.363 45.455 0.00 0.00 0.00 3.32
258 259 2.233431 GAGCTTGTGAGAGAGATGGTGT 59.767 50.000 0.00 0.00 0.00 4.16
259 260 2.496871 AGAGCTTGTGAGAGAGATGGTG 59.503 50.000 0.00 0.00 0.00 4.17
260 261 2.760092 GAGAGCTTGTGAGAGAGATGGT 59.240 50.000 0.00 0.00 0.00 3.55
261 262 3.025978 AGAGAGCTTGTGAGAGAGATGG 58.974 50.000 0.00 0.00 0.00 3.51
262 263 3.949754 AGAGAGAGCTTGTGAGAGAGATG 59.050 47.826 0.00 0.00 0.00 2.90
263 264 4.080129 AGAGAGAGAGCTTGTGAGAGAGAT 60.080 45.833 0.00 0.00 0.00 2.75
264 265 3.264193 AGAGAGAGAGCTTGTGAGAGAGA 59.736 47.826 0.00 0.00 0.00 3.10
265 266 3.614092 AGAGAGAGAGCTTGTGAGAGAG 58.386 50.000 0.00 0.00 0.00 3.20
266 267 3.719268 AGAGAGAGAGCTTGTGAGAGA 57.281 47.619 0.00 0.00 0.00 3.10
267 268 4.336433 CCTAAGAGAGAGAGCTTGTGAGAG 59.664 50.000 0.00 0.00 0.00 3.20
268 269 4.018870 TCCTAAGAGAGAGAGCTTGTGAGA 60.019 45.833 0.00 0.00 0.00 3.27
269 270 4.269183 TCCTAAGAGAGAGAGCTTGTGAG 58.731 47.826 0.00 0.00 0.00 3.51
270 271 4.269183 CTCCTAAGAGAGAGAGCTTGTGA 58.731 47.826 0.00 0.00 43.39 3.58
271 272 3.181487 GCTCCTAAGAGAGAGAGCTTGTG 60.181 52.174 3.69 0.00 43.39 3.33
272 273 3.023832 GCTCCTAAGAGAGAGAGCTTGT 58.976 50.000 3.69 0.00 43.39 3.16
273 274 3.715628 GCTCCTAAGAGAGAGAGCTTG 57.284 52.381 3.69 0.00 43.39 4.01
276 277 2.654863 ACAGCTCCTAAGAGAGAGAGC 58.345 52.381 2.69 2.69 43.39 4.09
277 278 3.312421 CGAACAGCTCCTAAGAGAGAGAG 59.688 52.174 0.00 0.00 43.39 3.20
278 279 3.055021 TCGAACAGCTCCTAAGAGAGAGA 60.055 47.826 0.00 0.00 43.39 3.10
279 280 3.064820 GTCGAACAGCTCCTAAGAGAGAG 59.935 52.174 0.00 0.00 43.39 3.20
280 281 3.011119 GTCGAACAGCTCCTAAGAGAGA 58.989 50.000 0.00 0.00 43.39 3.10
281 282 2.223157 CGTCGAACAGCTCCTAAGAGAG 60.223 54.545 0.00 0.00 43.39 3.20
282 283 1.738350 CGTCGAACAGCTCCTAAGAGA 59.262 52.381 0.00 0.00 43.39 3.10
283 284 1.738350 TCGTCGAACAGCTCCTAAGAG 59.262 52.381 0.00 0.00 43.57 2.85
284 285 1.817357 TCGTCGAACAGCTCCTAAGA 58.183 50.000 0.00 0.00 0.00 2.10
285 286 2.541999 GGATCGTCGAACAGCTCCTAAG 60.542 54.545 0.00 0.00 0.00 2.18
286 287 1.404391 GGATCGTCGAACAGCTCCTAA 59.596 52.381 0.00 0.00 0.00 2.69
287 288 1.022735 GGATCGTCGAACAGCTCCTA 58.977 55.000 0.00 0.00 0.00 2.94
288 289 0.681564 AGGATCGTCGAACAGCTCCT 60.682 55.000 8.27 8.27 0.00 3.69
289 290 0.248702 GAGGATCGTCGAACAGCTCC 60.249 60.000 0.00 0.82 0.00 4.70
290 291 0.248702 GGAGGATCGTCGAACAGCTC 60.249 60.000 9.20 0.00 34.37 4.09
291 292 0.965866 TGGAGGATCGTCGAACAGCT 60.966 55.000 9.20 0.00 34.37 4.24
292 293 0.526524 CTGGAGGATCGTCGAACAGC 60.527 60.000 9.20 0.00 34.37 4.40
293 294 0.526524 GCTGGAGGATCGTCGAACAG 60.527 60.000 9.20 11.35 34.37 3.16
294 295 0.965866 AGCTGGAGGATCGTCGAACA 60.966 55.000 9.20 1.65 34.37 3.18
295 296 0.248702 GAGCTGGAGGATCGTCGAAC 60.249 60.000 9.20 0.00 34.37 3.95
296 297 1.384989 GGAGCTGGAGGATCGTCGAA 61.385 60.000 9.20 0.00 34.37 3.71
297 298 1.824329 GGAGCTGGAGGATCGTCGA 60.824 63.158 9.20 0.00 34.37 4.20
298 299 2.725008 GGAGCTGGAGGATCGTCG 59.275 66.667 9.20 0.00 34.37 5.12
299 300 1.456705 AGGGAGCTGGAGGATCGTC 60.457 63.158 6.88 6.88 34.37 4.20
300 301 1.760086 CAGGGAGCTGGAGGATCGT 60.760 63.158 0.00 0.00 34.37 3.73
301 302 1.045350 TTCAGGGAGCTGGAGGATCG 61.045 60.000 0.00 0.00 34.37 3.69
302 303 1.207791 TTTCAGGGAGCTGGAGGATC 58.792 55.000 0.00 0.00 0.00 3.36
303 304 1.773653 GATTTCAGGGAGCTGGAGGAT 59.226 52.381 0.00 0.00 0.00 3.24
304 305 1.207791 GATTTCAGGGAGCTGGAGGA 58.792 55.000 0.00 0.00 0.00 3.71
305 306 1.134159 CAGATTTCAGGGAGCTGGAGG 60.134 57.143 0.00 0.00 0.00 4.30
306 307 1.836166 TCAGATTTCAGGGAGCTGGAG 59.164 52.381 0.00 0.00 0.00 3.86
307 308 1.836166 CTCAGATTTCAGGGAGCTGGA 59.164 52.381 0.00 0.00 0.00 3.86
308 309 1.836166 TCTCAGATTTCAGGGAGCTGG 59.164 52.381 0.00 0.00 0.00 4.85
309 310 3.623906 TTCTCAGATTTCAGGGAGCTG 57.376 47.619 0.00 0.00 0.00 4.24
310 311 4.039339 AGATTCTCAGATTTCAGGGAGCT 58.961 43.478 0.00 0.00 0.00 4.09
311 312 4.128643 CAGATTCTCAGATTTCAGGGAGC 58.871 47.826 0.00 0.00 0.00 4.70
312 313 5.117584 CACAGATTCTCAGATTTCAGGGAG 58.882 45.833 0.00 0.00 0.00 4.30
313 314 4.080695 CCACAGATTCTCAGATTTCAGGGA 60.081 45.833 0.00 0.00 0.00 4.20
314 315 4.080695 TCCACAGATTCTCAGATTTCAGGG 60.081 45.833 0.00 0.00 0.00 4.45
315 316 5.095145 TCCACAGATTCTCAGATTTCAGG 57.905 43.478 0.00 0.00 0.00 3.86
316 317 4.571580 GCTCCACAGATTCTCAGATTTCAG 59.428 45.833 0.00 0.00 0.00 3.02
317 318 4.224594 AGCTCCACAGATTCTCAGATTTCA 59.775 41.667 0.00 0.00 0.00 2.69
318 319 4.571580 CAGCTCCACAGATTCTCAGATTTC 59.428 45.833 0.00 0.00 0.00 2.17
319 320 4.515361 CAGCTCCACAGATTCTCAGATTT 58.485 43.478 0.00 0.00 0.00 2.17
320 321 3.682155 GCAGCTCCACAGATTCTCAGATT 60.682 47.826 0.00 0.00 0.00 2.40
321 322 2.158928 GCAGCTCCACAGATTCTCAGAT 60.159 50.000 0.00 0.00 0.00 2.90
322 323 1.206610 GCAGCTCCACAGATTCTCAGA 59.793 52.381 0.00 0.00 0.00 3.27
323 324 1.654317 GCAGCTCCACAGATTCTCAG 58.346 55.000 0.00 0.00 0.00 3.35
324 325 0.251354 GGCAGCTCCACAGATTCTCA 59.749 55.000 0.00 0.00 34.01 3.27
325 326 0.540923 AGGCAGCTCCACAGATTCTC 59.459 55.000 5.21 0.00 37.29 2.87
326 327 0.990374 AAGGCAGCTCCACAGATTCT 59.010 50.000 5.21 0.00 37.29 2.40
327 328 1.831580 AAAGGCAGCTCCACAGATTC 58.168 50.000 5.21 0.00 37.29 2.52
328 329 2.165998 GAAAAGGCAGCTCCACAGATT 58.834 47.619 5.21 0.00 37.29 2.40
329 330 1.353694 AGAAAAGGCAGCTCCACAGAT 59.646 47.619 5.21 0.00 37.29 2.90
330 331 0.767375 AGAAAAGGCAGCTCCACAGA 59.233 50.000 5.21 0.00 37.29 3.41
331 332 1.163554 GAGAAAAGGCAGCTCCACAG 58.836 55.000 5.21 0.00 37.29 3.66
332 333 0.250901 GGAGAAAAGGCAGCTCCACA 60.251 55.000 0.00 0.00 45.89 4.17
333 334 2.560954 GGAGAAAAGGCAGCTCCAC 58.439 57.895 0.00 0.00 45.89 4.02
335 336 0.037447 AGTGGAGAAAAGGCAGCTCC 59.963 55.000 0.00 0.00 46.60 4.70
336 337 1.447945 GAGTGGAGAAAAGGCAGCTC 58.552 55.000 0.00 0.00 0.00 4.09
337 338 0.037447 GGAGTGGAGAAAAGGCAGCT 59.963 55.000 0.00 0.00 0.00 4.24
338 339 0.250901 TGGAGTGGAGAAAAGGCAGC 60.251 55.000 0.00 0.00 0.00 5.25
339 340 1.528129 GTGGAGTGGAGAAAAGGCAG 58.472 55.000 0.00 0.00 0.00 4.85
340 341 0.110486 GGTGGAGTGGAGAAAAGGCA 59.890 55.000 0.00 0.00 0.00 4.75
341 342 0.110486 TGGTGGAGTGGAGAAAAGGC 59.890 55.000 0.00 0.00 0.00 4.35
342 343 2.887151 ATGGTGGAGTGGAGAAAAGG 57.113 50.000 0.00 0.00 0.00 3.11
343 344 5.535753 AAAAATGGTGGAGTGGAGAAAAG 57.464 39.130 0.00 0.00 0.00 2.27
344 345 5.010617 GCTAAAAATGGTGGAGTGGAGAAAA 59.989 40.000 0.00 0.00 0.00 2.29
345 346 4.522789 GCTAAAAATGGTGGAGTGGAGAAA 59.477 41.667 0.00 0.00 0.00 2.52
346 347 4.079253 GCTAAAAATGGTGGAGTGGAGAA 58.921 43.478 0.00 0.00 0.00 2.87
347 348 3.330701 AGCTAAAAATGGTGGAGTGGAGA 59.669 43.478 0.00 0.00 0.00 3.71
348 349 3.690460 AGCTAAAAATGGTGGAGTGGAG 58.310 45.455 0.00 0.00 0.00 3.86
349 350 3.806949 AGCTAAAAATGGTGGAGTGGA 57.193 42.857 0.00 0.00 0.00 4.02
350 351 4.331968 TGTAGCTAAAAATGGTGGAGTGG 58.668 43.478 0.00 0.00 0.00 4.00
351 352 4.142600 GCTGTAGCTAAAAATGGTGGAGTG 60.143 45.833 0.00 0.00 38.21 3.51
352 353 4.010349 GCTGTAGCTAAAAATGGTGGAGT 58.990 43.478 0.00 0.00 38.21 3.85
353 354 4.622701 GCTGTAGCTAAAAATGGTGGAG 57.377 45.455 0.00 0.00 38.21 3.86
367 368 0.391793 GGAGTTGGTGGAGCTGTAGC 60.392 60.000 0.00 0.00 42.49 3.58
368 369 1.066573 CAGGAGTTGGTGGAGCTGTAG 60.067 57.143 0.00 0.00 0.00 2.74
369 370 0.976641 CAGGAGTTGGTGGAGCTGTA 59.023 55.000 0.00 0.00 0.00 2.74
370 371 1.757306 CAGGAGTTGGTGGAGCTGT 59.243 57.895 0.00 0.00 0.00 4.40
371 372 1.002868 CCAGGAGTTGGTGGAGCTG 60.003 63.158 0.00 0.00 42.41 4.24
372 373 3.488423 CCAGGAGTTGGTGGAGCT 58.512 61.111 0.00 0.00 42.41 4.09
375 376 3.530017 TCCACTCCAGGAGTTGGTGGA 62.530 57.143 20.57 20.19 45.27 4.02
377 378 3.878774 AAGTCCACTCCAGGAGTTGGTG 61.879 54.545 20.57 9.43 46.84 4.17
378 379 1.695989 AAGTCCACTCCAGGAGTTGGT 60.696 52.381 20.57 5.09 46.84 3.67
379 380 1.059913 AAGTCCACTCCAGGAGTTGG 58.940 55.000 20.57 22.07 46.84 3.77
382 383 0.838122 CCCAAGTCCACTCCAGGAGT 60.838 60.000 17.31 17.31 44.44 3.85
383 384 1.557269 CCCCAAGTCCACTCCAGGAG 61.557 65.000 15.72 15.72 38.64 3.69
384 385 1.538876 CCCCAAGTCCACTCCAGGA 60.539 63.158 0.00 0.00 34.64 3.86
385 386 1.538876 TCCCCAAGTCCACTCCAGG 60.539 63.158 0.00 0.00 0.00 4.45
386 387 1.986413 CTCCCCAAGTCCACTCCAG 59.014 63.158 0.00 0.00 0.00 3.86
387 388 2.224159 GCTCCCCAAGTCCACTCCA 61.224 63.158 0.00 0.00 0.00 3.86
388 389 2.671682 GCTCCCCAAGTCCACTCC 59.328 66.667 0.00 0.00 0.00 3.85
389 390 2.266055 CGCTCCCCAAGTCCACTC 59.734 66.667 0.00 0.00 0.00 3.51
390 391 3.322466 CCGCTCCCCAAGTCCACT 61.322 66.667 0.00 0.00 0.00 4.00
391 392 4.410400 CCCGCTCCCCAAGTCCAC 62.410 72.222 0.00 0.00 0.00 4.02
392 393 4.649705 TCCCGCTCCCCAAGTCCA 62.650 66.667 0.00 0.00 0.00 4.02
393 394 3.787001 CTCCCGCTCCCCAAGTCC 61.787 72.222 0.00 0.00 0.00 3.85
394 395 2.683933 TCTCCCGCTCCCCAAGTC 60.684 66.667 0.00 0.00 0.00 3.01
395 396 2.685380 CTCTCCCGCTCCCCAAGT 60.685 66.667 0.00 0.00 0.00 3.16
396 397 2.685380 ACTCTCCCGCTCCCCAAG 60.685 66.667 0.00 0.00 0.00 3.61
397 398 2.683933 GACTCTCCCGCTCCCCAA 60.684 66.667 0.00 0.00 0.00 4.12
398 399 3.663815 GAGACTCTCCCGCTCCCCA 62.664 68.421 0.00 0.00 0.00 4.96
399 400 2.835895 GAGACTCTCCCGCTCCCC 60.836 72.222 0.00 0.00 0.00 4.81
400 401 2.835895 GGAGACTCTCCCGCTCCC 60.836 72.222 13.65 0.00 44.36 4.30
407 408 0.963225 GGGCTATTCGGAGACTCTCC 59.037 60.000 14.52 14.52 46.44 3.71
408 409 0.963225 GGGGCTATTCGGAGACTCTC 59.037 60.000 1.74 0.00 34.32 3.20
409 410 0.558712 AGGGGCTATTCGGAGACTCT 59.441 55.000 1.74 0.00 34.32 3.24
410 411 1.415200 AAGGGGCTATTCGGAGACTC 58.585 55.000 0.00 0.00 34.32 3.36
411 412 2.769602 TAAGGGGCTATTCGGAGACT 57.230 50.000 0.00 0.00 34.32 3.24
412 413 5.046520 ACATAATAAGGGGCTATTCGGAGAC 60.047 44.000 0.00 0.00 34.32 3.36
413 414 5.046591 CACATAATAAGGGGCTATTCGGAGA 60.047 44.000 0.00 0.00 0.00 3.71
414 415 5.178797 CACATAATAAGGGGCTATTCGGAG 58.821 45.833 0.00 0.00 0.00 4.63
415 416 4.595781 ACACATAATAAGGGGCTATTCGGA 59.404 41.667 0.00 0.00 0.00 4.55
416 417 4.906618 ACACATAATAAGGGGCTATTCGG 58.093 43.478 0.00 0.00 0.00 4.30
417 418 5.334879 GCAACACATAATAAGGGGCTATTCG 60.335 44.000 0.00 0.00 0.00 3.34
418 419 5.334879 CGCAACACATAATAAGGGGCTATTC 60.335 44.000 0.00 0.00 0.00 1.75
419 420 4.518970 CGCAACACATAATAAGGGGCTATT 59.481 41.667 0.00 0.00 0.00 1.73
420 421 4.072131 CGCAACACATAATAAGGGGCTAT 58.928 43.478 0.00 0.00 0.00 2.97
421 422 3.472652 CGCAACACATAATAAGGGGCTA 58.527 45.455 0.00 0.00 0.00 3.93
422 423 2.297701 CGCAACACATAATAAGGGGCT 58.702 47.619 0.00 0.00 0.00 5.19
423 424 1.269051 GCGCAACACATAATAAGGGGC 60.269 52.381 0.30 0.00 0.00 5.80
424 425 2.290641 GAGCGCAACACATAATAAGGGG 59.709 50.000 11.47 0.00 0.00 4.79
425 426 2.290641 GGAGCGCAACACATAATAAGGG 59.709 50.000 11.47 0.00 0.00 3.95
426 427 2.032894 CGGAGCGCAACACATAATAAGG 60.033 50.000 11.47 0.00 0.00 2.69
427 428 3.238903 CGGAGCGCAACACATAATAAG 57.761 47.619 11.47 0.00 0.00 1.73
447 448 1.668253 GCAACTCGCTCGCAATTTGC 61.668 55.000 11.42 11.42 37.61 3.68
448 449 0.385849 TGCAACTCGCTCGCAATTTG 60.386 50.000 0.00 0.00 43.06 2.32
449 450 0.523072 ATGCAACTCGCTCGCAATTT 59.477 45.000 0.00 0.00 43.06 1.82
450 451 0.179181 CATGCAACTCGCTCGCAATT 60.179 50.000 0.00 0.00 43.06 2.32
451 452 1.426621 CATGCAACTCGCTCGCAAT 59.573 52.632 0.00 0.00 43.06 3.56
452 453 2.679934 CCATGCAACTCGCTCGCAA 61.680 57.895 0.00 0.00 43.06 4.85
453 454 3.120385 CCATGCAACTCGCTCGCA 61.120 61.111 0.00 0.00 43.06 5.10
454 455 4.527157 GCCATGCAACTCGCTCGC 62.527 66.667 0.00 0.00 43.06 5.03
455 456 2.393768 AAGCCATGCAACTCGCTCG 61.394 57.895 0.00 0.00 43.06 5.03
456 457 1.136147 CAAGCCATGCAACTCGCTC 59.864 57.895 0.00 0.00 43.06 5.03
457 458 2.338015 CCAAGCCATGCAACTCGCT 61.338 57.895 0.00 0.00 43.06 4.93
458 459 2.180017 CCAAGCCATGCAACTCGC 59.820 61.111 0.00 0.00 42.89 5.03
459 460 1.210931 CACCAAGCCATGCAACTCG 59.789 57.895 0.00 0.00 0.00 4.18
460 461 1.588082 CCACCAAGCCATGCAACTC 59.412 57.895 0.00 0.00 0.00 3.01
461 462 2.576832 GCCACCAAGCCATGCAACT 61.577 57.895 0.00 0.00 0.00 3.16
462 463 2.047939 GCCACCAAGCCATGCAAC 60.048 61.111 0.00 0.00 0.00 4.17
463 464 0.614134 TATGCCACCAAGCCATGCAA 60.614 50.000 0.00 0.00 35.30 4.08
464 465 1.000107 TATGCCACCAAGCCATGCA 60.000 52.632 0.00 0.00 36.23 3.96
465 466 1.737816 CTATGCCACCAAGCCATGC 59.262 57.895 0.00 0.00 0.00 4.06
466 467 0.754217 AGCTATGCCACCAAGCCATG 60.754 55.000 0.00 0.00 36.92 3.66
467 468 0.754217 CAGCTATGCCACCAAGCCAT 60.754 55.000 0.00 0.00 36.92 4.40
468 469 1.378911 CAGCTATGCCACCAAGCCA 60.379 57.895 0.00 0.00 36.92 4.75
469 470 3.518003 CAGCTATGCCACCAAGCC 58.482 61.111 0.00 0.00 36.92 4.35
487 488 1.153249 TGAATTCTAAGGCGGGCCG 60.153 57.895 24.35 24.35 41.95 6.13
488 489 0.393808 TGTGAATTCTAAGGCGGGCC 60.394 55.000 7.05 0.18 0.00 5.80
489 490 0.733150 GTGTGAATTCTAAGGCGGGC 59.267 55.000 7.05 0.00 0.00 6.13
490 491 2.107950 TGTGTGAATTCTAAGGCGGG 57.892 50.000 7.05 0.00 0.00 6.13
491 492 4.034048 GTGTATGTGTGAATTCTAAGGCGG 59.966 45.833 7.05 0.00 0.00 6.13
492 493 4.629634 TGTGTATGTGTGAATTCTAAGGCG 59.370 41.667 7.05 0.00 0.00 5.52
493 494 6.494893 TTGTGTATGTGTGAATTCTAAGGC 57.505 37.500 7.05 0.00 0.00 4.35
494 495 8.567948 ACTTTTGTGTATGTGTGAATTCTAAGG 58.432 33.333 7.05 0.00 0.00 2.69
495 496 9.385902 CACTTTTGTGTATGTGTGAATTCTAAG 57.614 33.333 7.05 0.00 44.94 2.18
513 514 6.406370 TCATATTCGGATCAGTCACTTTTGT 58.594 36.000 0.00 0.00 0.00 2.83
514 515 6.908870 TCATATTCGGATCAGTCACTTTTG 57.091 37.500 0.00 0.00 0.00 2.44
515 516 8.511604 AAATCATATTCGGATCAGTCACTTTT 57.488 30.769 0.00 0.00 0.00 2.27
516 517 8.511604 AAAATCATATTCGGATCAGTCACTTT 57.488 30.769 0.00 0.00 0.00 2.66
517 518 7.770433 TGAAAATCATATTCGGATCAGTCACTT 59.230 33.333 0.00 0.00 0.00 3.16
518 519 7.275183 TGAAAATCATATTCGGATCAGTCACT 58.725 34.615 0.00 0.00 0.00 3.41
519 520 7.225538 ACTGAAAATCATATTCGGATCAGTCAC 59.774 37.037 0.00 0.00 36.79 3.67
520 521 7.275183 ACTGAAAATCATATTCGGATCAGTCA 58.725 34.615 0.00 0.00 36.79 3.41
521 522 7.358765 CGACTGAAAATCATATTCGGATCAGTC 60.359 40.741 17.97 17.97 38.95 3.51
522 523 6.422100 CGACTGAAAATCATATTCGGATCAGT 59.578 38.462 4.90 4.90 36.79 3.41
523 524 6.642540 TCGACTGAAAATCATATTCGGATCAG 59.357 38.462 0.00 0.00 36.79 2.90
524 525 6.512297 TCGACTGAAAATCATATTCGGATCA 58.488 36.000 0.00 0.00 36.79 2.92
525 526 7.588143 ATCGACTGAAAATCATATTCGGATC 57.412 36.000 2.35 0.00 36.79 3.36
526 527 7.657354 TCAATCGACTGAAAATCATATTCGGAT 59.343 33.333 0.00 0.00 36.79 4.18
527 528 6.983890 TCAATCGACTGAAAATCATATTCGGA 59.016 34.615 0.00 0.00 36.79 4.55
528 529 7.065894 GTCAATCGACTGAAAATCATATTCGG 58.934 38.462 0.00 0.00 39.22 4.30
529 530 7.580523 GTGTCAATCGACTGAAAATCATATTCG 59.419 37.037 0.00 0.00 43.06 3.34
530 531 8.607459 AGTGTCAATCGACTGAAAATCATATTC 58.393 33.333 0.00 0.00 43.06 1.75
531 532 8.498054 AGTGTCAATCGACTGAAAATCATATT 57.502 30.769 0.00 0.00 43.06 1.28
532 533 7.225538 GGAGTGTCAATCGACTGAAAATCATAT 59.774 37.037 15.44 0.00 43.06 1.78
533 534 6.535150 GGAGTGTCAATCGACTGAAAATCATA 59.465 38.462 15.44 0.00 43.06 2.15
534 535 5.352569 GGAGTGTCAATCGACTGAAAATCAT 59.647 40.000 15.44 0.00 43.06 2.45
535 536 4.690748 GGAGTGTCAATCGACTGAAAATCA 59.309 41.667 15.44 0.00 43.06 2.57
536 537 4.093556 GGGAGTGTCAATCGACTGAAAATC 59.906 45.833 5.96 5.96 43.06 2.17
537 538 4.003648 GGGAGTGTCAATCGACTGAAAAT 58.996 43.478 0.00 0.00 43.06 1.82
538 539 3.181459 TGGGAGTGTCAATCGACTGAAAA 60.181 43.478 0.00 0.00 43.06 2.29
539 540 2.367241 TGGGAGTGTCAATCGACTGAAA 59.633 45.455 0.00 0.00 43.06 2.69
540 541 1.967779 TGGGAGTGTCAATCGACTGAA 59.032 47.619 0.00 0.00 43.06 3.02
541 542 1.627864 TGGGAGTGTCAATCGACTGA 58.372 50.000 0.00 0.00 43.06 3.41
542 543 2.455674 TTGGGAGTGTCAATCGACTG 57.544 50.000 0.00 0.00 43.06 3.51
543 544 2.368875 ACTTTGGGAGTGTCAATCGACT 59.631 45.455 0.00 0.00 43.06 4.18
544 545 2.767505 ACTTTGGGAGTGTCAATCGAC 58.232 47.619 0.00 0.00 42.93 4.20
545 546 3.138304 CAACTTTGGGAGTGTCAATCGA 58.862 45.455 0.00 0.00 39.00 3.59
546 547 2.878406 ACAACTTTGGGAGTGTCAATCG 59.122 45.455 0.00 0.00 39.00 3.34
547 548 5.278315 GGTTACAACTTTGGGAGTGTCAATC 60.278 44.000 0.00 0.00 39.00 2.67
548 549 4.583073 GGTTACAACTTTGGGAGTGTCAAT 59.417 41.667 0.00 0.00 39.00 2.57
549 550 3.949113 GGTTACAACTTTGGGAGTGTCAA 59.051 43.478 0.00 0.00 39.00 3.18
550 551 3.054287 TGGTTACAACTTTGGGAGTGTCA 60.054 43.478 0.00 0.00 39.00 3.58
551 552 3.547746 TGGTTACAACTTTGGGAGTGTC 58.452 45.455 0.00 0.00 39.00 3.67
552 553 3.655615 TGGTTACAACTTTGGGAGTGT 57.344 42.857 0.00 0.00 39.00 3.55
553 554 3.305335 GCATGGTTACAACTTTGGGAGTG 60.305 47.826 0.00 0.00 39.00 3.51
554 555 2.890945 GCATGGTTACAACTTTGGGAGT 59.109 45.455 0.00 0.00 41.47 3.85
555 556 2.890311 TGCATGGTTACAACTTTGGGAG 59.110 45.455 0.00 0.00 0.00 4.30
556 557 2.950781 TGCATGGTTACAACTTTGGGA 58.049 42.857 0.00 0.00 0.00 4.37
557 558 3.587923 CATGCATGGTTACAACTTTGGG 58.412 45.455 19.40 0.00 0.00 4.12
558 559 2.995258 GCATGCATGGTTACAACTTTGG 59.005 45.455 27.34 0.00 0.00 3.28
559 560 3.651206 TGCATGCATGGTTACAACTTTG 58.349 40.909 27.34 0.00 0.00 2.77
591 592 1.377725 CAGTAACAGCAGGCCCCAG 60.378 63.158 0.00 0.00 0.00 4.45
625 626 0.955919 GAGTTCACCTTCGGGCTTGG 60.956 60.000 0.00 0.00 39.10 3.61
747 750 1.596934 GCTGTAGCCTGTAGCCACA 59.403 57.895 0.00 0.00 45.47 4.17
748 751 4.522971 GCTGTAGCCTGTAGCCAC 57.477 61.111 0.00 0.00 45.47 5.01
775 786 1.446907 CAACTAGCCTGAGCCTGTTG 58.553 55.000 0.00 6.44 42.30 3.33
820 832 2.443016 CCCTGGTCCTAGCGAGCT 60.443 66.667 2.25 2.25 39.84 4.09
834 847 3.492353 CCATCATCGGCCACCCCT 61.492 66.667 2.24 0.00 0.00 4.79
952 974 1.227176 CGGCCGGCCTTAAGTAGAC 60.227 63.158 41.01 12.95 0.00 2.59
1199 2583 1.000955 TCTTCTCCTCGCCTGAAACAC 59.999 52.381 0.00 0.00 0.00 3.32
1309 5613 3.391665 CTCCCTGGCATCCCACGAC 62.392 68.421 0.00 0.00 35.79 4.34
1429 7147 5.574443 GGAAGACGTTAGTGGTGTACATAAC 59.426 44.000 0.00 2.93 0.00 1.89
1544 10234 1.838568 CGACACGACGACCACTCTCA 61.839 60.000 0.00 0.00 35.09 3.27
1679 10376 4.568956 TGATTATCATAGTGATGGTGCGG 58.431 43.478 2.82 0.00 37.70 5.69
2375 11235 1.488705 ATCGTTTCCCTCAGTGGCCA 61.489 55.000 0.00 0.00 0.00 5.36
2389 11249 0.386858 CGACGGTGTCTGTGATCGTT 60.387 55.000 0.00 0.00 34.06 3.85
2655 11516 4.918810 AATAATTTCGGGCATGTTCCTC 57.081 40.909 0.00 0.00 0.00 3.71
2665 11526 8.038351 ACAGTCCCAAAAATTAATAATTTCGGG 58.962 33.333 25.31 25.31 45.73 5.14
2829 11690 2.057140 ACTTGTTTACCCCTAACCCGT 58.943 47.619 0.00 0.00 0.00 5.28
3339 12208 5.237344 CCACCAATTATTCGGATCTGTTCTC 59.763 44.000 0.42 0.00 0.00 2.87
3404 12273 7.103641 GTGATCAAAAGGAGTAGGACATTACA 58.896 38.462 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.