Multiple sequence alignment - TraesCS5D01G275600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G275600 chr5D 100.000 2417 0 0 1 2417 378141538 378143954 0.000000e+00 4464
1 TraesCS5D01G275600 chr5D 85.982 906 111 12 665 1560 378125239 378126138 0.000000e+00 955
2 TraesCS5D01G275600 chr5D 87.176 694 78 8 1481 2169 378126140 378126827 0.000000e+00 778
3 TraesCS5D01G275600 chr5D 86.466 133 9 2 376 506 378128365 378128490 1.170000e-28 137
4 TraesCS5D01G275600 chr5B 91.698 1578 89 14 4 1560 453691075 453689519 0.000000e+00 2150
5 TraesCS5D01G275600 chr5B 84.119 1612 201 34 640 2231 453674114 453672538 0.000000e+00 1507
6 TraesCS5D01G275600 chr5B 89.387 914 91 6 999 1911 453687823 453686915 0.000000e+00 1146
7 TraesCS5D01G275600 chr5B 84.342 958 108 20 1481 2417 453770432 453769496 0.000000e+00 900
8 TraesCS5D01G275600 chr5B 83.878 887 108 15 687 1560 453723710 453722846 0.000000e+00 813
9 TraesCS5D01G275600 chr5B 82.911 948 100 26 1481 2406 453689517 453688610 0.000000e+00 797
10 TraesCS5D01G275600 chr5B 87.697 699 61 16 1571 2262 453667939 453667259 0.000000e+00 791
11 TraesCS5D01G275600 chr5B 81.370 934 125 30 669 1560 453726899 453725973 0.000000e+00 715
12 TraesCS5D01G275600 chr5B 91.281 367 28 4 602 967 453688189 453687826 4.640000e-137 497
13 TraesCS5D01G275600 chr5B 90.379 343 28 3 628 967 453668822 453668482 1.700000e-121 446
14 TraesCS5D01G275600 chr5B 87.462 327 25 7 7 325 453686836 453686518 1.770000e-96 363
15 TraesCS5D01G275600 chr5B 84.697 379 34 14 4 370 453688722 453688356 8.220000e-95 357
16 TraesCS5D01G275600 chr5B 86.585 164 16 3 2258 2417 453663040 453662879 2.470000e-40 176
17 TraesCS5D01G275600 chr5B 88.971 136 13 2 602 737 453692795 453692662 1.490000e-37 167
18 TraesCS5D01G275600 chr5B 82.447 188 18 2 2243 2415 453686909 453686722 1.500000e-32 150
19 TraesCS5D01G275600 chr5A 86.454 908 103 12 665 1560 478861244 478862143 0.000000e+00 977
20 TraesCS5D01G275600 chr5A 85.076 918 108 17 665 1560 478864382 478865292 0.000000e+00 909
21 TraesCS5D01G275600 chr5A 90.735 680 57 6 999 1675 478882354 478883030 0.000000e+00 902
22 TraesCS5D01G275600 chr5A 88.372 387 26 12 1 375 478862950 478863329 4.740000e-122 448
23 TraesCS5D01G275600 chr5A 87.568 370 26 11 602 967 478881998 478882351 6.220000e-111 411
24 TraesCS5D01G275600 chr5A 92.271 207 15 1 602 807 478880914 478881120 2.350000e-75 292
25 TraesCS5D01G275600 chr5A 90.909 154 9 3 454 605 478881792 478881942 4.070000e-48 202
26 TraesCS5D01G275600 chr5A 78.448 232 17 10 376 605 478880658 478880858 1.170000e-23 121
27 TraesCS5D01G275600 chrUn 85.792 915 108 13 661 1560 67015298 67014391 0.000000e+00 950
28 TraesCS5D01G275600 chrUn 85.792 915 108 13 661 1560 171261967 171262874 0.000000e+00 950
29 TraesCS5D01G275600 chrUn 85.792 915 108 13 661 1560 171300983 171301890 0.000000e+00 950
30 TraesCS5D01G275600 chrUn 84.912 961 113 17 625 1560 171286752 171287705 0.000000e+00 942
31 TraesCS5D01G275600 chrUn 85.265 923 104 15 663 1560 171254205 171255120 0.000000e+00 922
32 TraesCS5D01G275600 chrUn 84.639 957 108 17 1481 2417 171301892 171302829 0.000000e+00 917
33 TraesCS5D01G275600 chrUn 84.431 957 110 17 1481 2417 67014389 67013452 0.000000e+00 905
34 TraesCS5D01G275600 chrUn 84.326 957 111 17 1481 2417 171262876 171263813 0.000000e+00 900
35 TraesCS5D01G275600 chrUn 84.342 958 108 20 1481 2417 171272056 171272992 0.000000e+00 900
36 TraesCS5D01G275600 chrUn 84.013 957 113 17 1481 2417 171279547 171280483 0.000000e+00 883
37 TraesCS5D01G275600 chrUn 84.880 873 101 14 663 1510 359324003 359323137 0.000000e+00 852
38 TraesCS5D01G275600 chrUn 83.490 957 113 27 1481 2417 390532387 390531456 0.000000e+00 850
39 TraesCS5D01G275600 chrUn 84.765 873 102 14 663 1510 67022771 67021905 0.000000e+00 846
40 TraesCS5D01G275600 chrUn 83.281 957 116 24 1481 2417 171287707 171288639 0.000000e+00 841
41 TraesCS5D01G275600 chrUn 83.281 957 115 27 1481 2417 171255122 171256053 0.000000e+00 839
42 TraesCS5D01G275600 chrUn 82.409 631 84 12 625 1231 171276079 171276706 2.130000e-145 525
43 TraesCS5D01G275600 chrUn 89.815 324 21 4 4 325 67021509 67021196 2.890000e-109 405
44 TraesCS5D01G275600 chrUn 89.815 324 21 4 1 322 171255931 171256244 2.890000e-109 405
45 TraesCS5D01G275600 chrUn 89.815 324 21 4 4 325 390531575 390531262 2.890000e-109 405
46 TraesCS5D01G275600 chrUn 85.864 382 31 12 1 369 171288517 171288888 3.770000e-103 385
47 TraesCS5D01G275600 chrUn 90.333 300 19 7 1 300 171291751 171292040 3.770000e-103 385
48 TraesCS5D01G275600 chrUn 90.333 300 19 7 1 300 171295081 171295370 3.770000e-103 385
49 TraesCS5D01G275600 chrUn 90.333 300 19 7 1 300 171298811 171299100 3.770000e-103 385
50 TraesCS5D01G275600 chrUn 90.333 300 19 7 1 300 361063855 361064144 3.770000e-103 385
51 TraesCS5D01G275600 chrUn 90.236 297 19 7 4 300 67018335 67018049 1.750000e-101 379
52 TraesCS5D01G275600 chrUn 79.885 522 66 23 1916 2417 67021892 67021390 1.780000e-91 346
53 TraesCS5D01G275600 chrUn 84.807 362 21 12 1 357 171272870 171273202 1.380000e-87 333
54 TraesCS5D01G275600 chrUn 84.530 362 22 12 1 357 171283543 171283875 6.440000e-86 327
55 TraesCS5D01G275600 chrUn 83.246 382 25 13 4 375 67013571 67013219 5.020000e-82 315
56 TraesCS5D01G275600 chrUn 83.924 367 20 13 1 357 171263691 171264028 5.020000e-82 315
57 TraesCS5D01G275600 chrUn 87.500 160 12 6 376 534 171273257 171273409 6.870000e-41 178
58 TraesCS5D01G275600 chrUn 87.500 160 12 6 376 534 171283930 171284082 6.870000e-41 178
59 TraesCS5D01G275600 chrUn 85.143 175 14 10 376 547 67013181 67013016 4.130000e-38 169
60 TraesCS5D01G275600 chrUn 85.143 175 14 10 376 547 171264084 171264249 4.130000e-38 169
61 TraesCS5D01G275600 chrUn 85.143 175 14 10 376 547 171270081 171270246 4.130000e-38 169
62 TraesCS5D01G275600 chrUn 85.143 175 14 10 376 547 171280754 171280919 4.130000e-38 169
63 TraesCS5D01G275600 chrUn 85.143 175 14 10 376 547 360031093 360030928 4.130000e-38 169
64 TraesCS5D01G275600 chrUn 86.250 160 14 7 376 534 353683981 353684133 1.490000e-37 167
65 TraesCS5D01G275600 chrUn 86.250 160 14 7 376 534 404362984 404363136 1.490000e-37 167
66 TraesCS5D01G275600 chrUn 86.250 160 14 7 376 534 470020052 470019900 1.490000e-37 167
67 TraesCS5D01G275600 chrUn 84.483 174 17 8 376 547 171303100 171303265 1.920000e-36 163
68 TraesCS5D01G275600 chrUn 90.351 114 2 3 501 605 67015570 67015457 9.010000e-30 141
69 TraesCS5D01G275600 chrUn 90.351 114 2 3 501 605 171261697 171261810 9.010000e-30 141
70 TraesCS5D01G275600 chrUn 90.351 114 2 3 501 605 171297346 171297459 9.010000e-30 141
71 TraesCS5D01G275600 chrUn 90.351 114 2 3 501 605 347092593 347092706 9.010000e-30 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G275600 chr5D 378141538 378143954 2416 False 4464.000000 4464 100.000000 1 2417 1 chr5D.!!$F1 2416
1 TraesCS5D01G275600 chr5D 378125239 378128490 3251 False 623.333333 955 86.541333 376 2169 3 chr5D.!!$F2 1793
2 TraesCS5D01G275600 chr5B 453667259 453674114 6855 True 914.666667 1507 87.398333 628 2262 3 chr5B.!!$R3 1634
3 TraesCS5D01G275600 chr5B 453769496 453770432 936 True 900.000000 900 84.342000 1481 2417 1 chr5B.!!$R2 936
4 TraesCS5D01G275600 chr5B 453722846 453726899 4053 True 764.000000 813 82.624000 669 1560 2 chr5B.!!$R5 891
5 TraesCS5D01G275600 chr5B 453686518 453692795 6277 True 703.375000 2150 87.356750 4 2415 8 chr5B.!!$R4 2411
6 TraesCS5D01G275600 chr5A 478861244 478865292 4048 False 778.000000 977 86.634000 1 1560 3 chr5A.!!$F1 1559
7 TraesCS5D01G275600 chr5A 478880658 478883030 2372 False 385.600000 902 87.986200 376 1675 5 chr5A.!!$F2 1299
8 TraesCS5D01G275600 chrUn 359323137 359324003 866 True 852.000000 852 84.880000 663 1510 1 chrUn.!!$R1 847
9 TraesCS5D01G275600 chrUn 171254205 171256244 2039 False 722.000000 922 86.120333 1 2417 3 chrUn.!!$F5 2416
10 TraesCS5D01G275600 chrUn 390531262 390532387 1125 True 627.500000 850 86.652500 4 2417 2 chrUn.!!$R5 2413
11 TraesCS5D01G275600 chrUn 67013016 67022771 9755 True 495.111111 950 85.962667 4 2417 9 chrUn.!!$R4 2413
12 TraesCS5D01G275600 chrUn 171261697 171264249 2552 False 495.000000 950 85.907200 1 2417 5 chrUn.!!$F6 2416
13 TraesCS5D01G275600 chrUn 171270081 171303265 33184 False 481.894737 950 86.089895 1 2417 19 chrUn.!!$F7 2416

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.108615 CGCCACAACCCTCTACTCAG 60.109 60.0 0.00 0.0 0.00 3.35 F
532 535 0.250513 GGGATCAACTCCTCGTGCTT 59.749 55.0 0.00 0.0 44.28 3.91 F
1393 20795 0.391661 GTCTGACACCCATGATGCGT 60.392 55.0 2.24 0.0 0.00 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1207 20606 0.246635 ACGGTCTGGTTGATCTTCCG 59.753 55.0 0.0 0.0 41.77 4.30 R
1397 20799 1.209275 CTATTCCCAGAGCGCGAACG 61.209 60.0 12.1 0.0 44.07 3.95 R
2280 38902 2.570415 TCCCGTTTTATGTTGGCTGA 57.430 45.0 0.0 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.278956 CACGCCACAACCCTCTAC 57.721 61.111 0.00 0.00 0.00 2.59
21 22 0.108615 CGCCACAACCCTCTACTCAG 60.109 60.000 0.00 0.00 0.00 3.35
22 23 0.977395 GCCACAACCCTCTACTCAGT 59.023 55.000 0.00 0.00 0.00 3.41
24 25 2.872038 GCCACAACCCTCTACTCAGTTG 60.872 54.545 0.00 0.00 44.04 3.16
25 26 2.632996 CCACAACCCTCTACTCAGTTGA 59.367 50.000 8.58 0.00 41.65 3.18
27 28 3.574396 CACAACCCTCTACTCAGTTGAGA 59.426 47.826 16.91 0.00 44.74 3.27
28 29 4.039245 CACAACCCTCTACTCAGTTGAGAA 59.961 45.833 16.91 0.83 44.74 2.87
29 30 4.039366 ACAACCCTCTACTCAGTTGAGAAC 59.961 45.833 16.91 0.00 44.74 3.01
31 32 2.164624 CCCTCTACTCAGTTGAGAACGG 59.835 54.545 16.91 6.73 44.74 4.44
32 33 2.164624 CCTCTACTCAGTTGAGAACGGG 59.835 54.545 16.91 8.34 44.74 5.28
33 34 3.082548 CTCTACTCAGTTGAGAACGGGA 58.917 50.000 10.49 5.50 44.74 5.14
34 35 3.493334 TCTACTCAGTTGAGAACGGGAA 58.507 45.455 15.63 0.00 44.74 3.97
35 36 2.821991 ACTCAGTTGAGAACGGGAAG 57.178 50.000 15.63 0.00 44.74 3.46
36 37 1.344763 ACTCAGTTGAGAACGGGAAGG 59.655 52.381 15.63 0.00 44.74 3.46
37 38 0.685097 TCAGTTGAGAACGGGAAGGG 59.315 55.000 0.00 0.00 36.23 3.95
38 39 0.396811 CAGTTGAGAACGGGAAGGGT 59.603 55.000 0.00 0.00 36.23 4.34
39 40 1.137697 AGTTGAGAACGGGAAGGGTT 58.862 50.000 0.00 0.00 36.23 4.11
40 41 2.038033 CAGTTGAGAACGGGAAGGGTTA 59.962 50.000 0.00 0.00 36.23 2.85
41 42 2.302157 AGTTGAGAACGGGAAGGGTTAG 59.698 50.000 0.00 0.00 36.23 2.34
42 43 2.301009 GTTGAGAACGGGAAGGGTTAGA 59.699 50.000 0.00 0.00 0.00 2.10
43 44 2.612000 TGAGAACGGGAAGGGTTAGAA 58.388 47.619 0.00 0.00 0.00 2.10
44 45 2.974099 TGAGAACGGGAAGGGTTAGAAA 59.026 45.455 0.00 0.00 0.00 2.52
45 46 3.585732 TGAGAACGGGAAGGGTTAGAAAT 59.414 43.478 0.00 0.00 0.00 2.17
46 47 4.042435 TGAGAACGGGAAGGGTTAGAAATT 59.958 41.667 0.00 0.00 0.00 1.82
47 48 5.248934 TGAGAACGGGAAGGGTTAGAAATTA 59.751 40.000 0.00 0.00 0.00 1.40
48 49 5.742063 AGAACGGGAAGGGTTAGAAATTAG 58.258 41.667 0.00 0.00 0.00 1.73
49 50 5.250082 AGAACGGGAAGGGTTAGAAATTAGT 59.750 40.000 0.00 0.00 0.00 2.24
50 51 5.509832 ACGGGAAGGGTTAGAAATTAGTT 57.490 39.130 0.00 0.00 0.00 2.24
51 52 6.625532 ACGGGAAGGGTTAGAAATTAGTTA 57.374 37.500 0.00 0.00 0.00 2.24
52 53 6.647229 ACGGGAAGGGTTAGAAATTAGTTAG 58.353 40.000 0.00 0.00 0.00 2.34
53 54 6.214208 ACGGGAAGGGTTAGAAATTAGTTAGT 59.786 38.462 0.00 0.00 0.00 2.24
54 55 7.108194 CGGGAAGGGTTAGAAATTAGTTAGTT 58.892 38.462 0.00 0.00 0.00 2.24
55 56 7.609146 CGGGAAGGGTTAGAAATTAGTTAGTTT 59.391 37.037 0.00 0.00 0.00 2.66
56 57 9.305555 GGGAAGGGTTAGAAATTAGTTAGTTTT 57.694 33.333 0.00 0.00 0.00 2.43
68 69 9.529325 AAATTAGTTAGTTTTGACTTTTGAGGC 57.471 29.630 0.00 0.00 0.00 4.70
70 71 8.967664 TTAGTTAGTTTTGACTTTTGAGGCTA 57.032 30.769 0.00 0.00 0.00 3.93
73 74 7.556635 AGTTAGTTTTGACTTTTGAGGCTAAGT 59.443 33.333 0.85 0.85 37.31 2.24
74 75 6.775594 AGTTTTGACTTTTGAGGCTAAGTT 57.224 33.333 2.86 0.00 34.88 2.66
75 76 7.170393 AGTTTTGACTTTTGAGGCTAAGTTT 57.830 32.000 2.86 0.00 34.88 2.66
81 82 4.947388 ACTTTTGAGGCTAAGTTTGTCACA 59.053 37.500 0.00 0.00 30.72 3.58
84 85 4.150897 TGAGGCTAAGTTTGTCACAGTT 57.849 40.909 0.00 0.00 0.00 3.16
85 86 3.876914 TGAGGCTAAGTTTGTCACAGTTG 59.123 43.478 0.00 0.00 0.00 3.16
86 87 4.127171 GAGGCTAAGTTTGTCACAGTTGA 58.873 43.478 0.00 0.00 0.00 3.18
87 88 4.523083 AGGCTAAGTTTGTCACAGTTGAA 58.477 39.130 0.00 0.00 31.90 2.69
88 89 4.947388 AGGCTAAGTTTGTCACAGTTGAAA 59.053 37.500 0.00 0.00 31.90 2.69
92 93 4.989279 AGTTTGTCACAGTTGAAATGCT 57.011 36.364 0.00 0.00 31.90 3.79
94 95 6.449635 AGTTTGTCACAGTTGAAATGCTAA 57.550 33.333 0.00 0.00 31.90 3.09
95 96 6.862209 AGTTTGTCACAGTTGAAATGCTAAA 58.138 32.000 0.00 0.00 31.90 1.85
98 99 9.243637 GTTTGTCACAGTTGAAATGCTAAATTA 57.756 29.630 0.00 0.00 31.90 1.40
99 100 9.979578 TTTGTCACAGTTGAAATGCTAAATTAT 57.020 25.926 0.00 0.00 31.90 1.28
101 102 9.013229 TGTCACAGTTGAAATGCTAAATTATCT 57.987 29.630 0.00 0.00 31.90 1.98
102 103 9.846248 GTCACAGTTGAAATGCTAAATTATCTT 57.154 29.630 0.00 0.00 31.90 2.40
126 127 9.196139 CTTACAATTTGATGGGGAAAATACCTA 57.804 33.333 2.79 0.00 0.00 3.08
129 130 9.722317 ACAATTTGATGGGGAAAATACCTATAA 57.278 29.630 2.79 0.00 28.37 0.98
134 135 8.776061 TGATGGGGAAAATACCTATAAAAAGG 57.224 34.615 0.00 0.00 42.82 3.11
135 136 7.289084 TGATGGGGAAAATACCTATAAAAAGGC 59.711 37.037 0.00 0.00 40.62 4.35
136 137 6.747931 TGGGGAAAATACCTATAAAAAGGCT 58.252 36.000 0.00 0.00 40.62 4.58
137 138 7.884891 TGGGGAAAATACCTATAAAAAGGCTA 58.115 34.615 0.00 0.00 40.62 3.93
138 139 8.345306 TGGGGAAAATACCTATAAAAAGGCTAA 58.655 33.333 0.00 0.00 40.62 3.09
141 142 9.132923 GGAAAATACCTATAAAAAGGCTAAGCT 57.867 33.333 0.00 0.00 40.62 3.74
150 151 9.617975 CTATAAAAAGGCTAAGCTTATGATTGC 57.382 33.333 6.64 6.37 0.00 3.56
151 152 6.535963 AAAAAGGCTAAGCTTATGATTGCT 57.464 33.333 6.64 0.00 41.82 3.91
154 155 7.645058 AAAGGCTAAGCTTATGATTGCTAAA 57.355 32.000 6.64 0.00 38.75 1.85
156 157 6.360618 AGGCTAAGCTTATGATTGCTAAACT 58.639 36.000 6.64 0.00 38.75 2.66
157 158 7.509546 AGGCTAAGCTTATGATTGCTAAACTA 58.490 34.615 6.64 0.00 38.75 2.24
158 159 8.160106 AGGCTAAGCTTATGATTGCTAAACTAT 58.840 33.333 6.64 0.00 38.75 2.12
159 160 8.233190 GGCTAAGCTTATGATTGCTAAACTATG 58.767 37.037 6.64 0.00 38.75 2.23
160 161 8.233190 GCTAAGCTTATGATTGCTAAACTATGG 58.767 37.037 6.64 0.00 38.75 2.74
161 162 9.494271 CTAAGCTTATGATTGCTAAACTATGGA 57.506 33.333 6.64 0.00 38.75 3.41
162 163 8.930846 AAGCTTATGATTGCTAAACTATGGAT 57.069 30.769 0.00 0.00 38.75 3.41
165 166 9.971922 GCTTATGATTGCTAAACTATGGATTTT 57.028 29.630 0.00 0.00 0.00 1.82
190 191 8.419076 TTTTCAATTTAGTGAGGAAAAACAGC 57.581 30.769 0.00 0.00 35.30 4.40
191 192 6.084326 TCAATTTAGTGAGGAAAAACAGCC 57.916 37.500 0.00 0.00 0.00 4.85
192 193 5.596361 TCAATTTAGTGAGGAAAAACAGCCA 59.404 36.000 0.00 0.00 0.00 4.75
194 195 5.452078 TTTAGTGAGGAAAAACAGCCATG 57.548 39.130 0.00 0.00 0.00 3.66
195 196 3.228188 AGTGAGGAAAAACAGCCATGA 57.772 42.857 0.00 0.00 0.00 3.07
196 197 3.565307 AGTGAGGAAAAACAGCCATGAA 58.435 40.909 0.00 0.00 0.00 2.57
197 198 3.960102 AGTGAGGAAAAACAGCCATGAAA 59.040 39.130 0.00 0.00 0.00 2.69
198 199 4.590222 AGTGAGGAAAAACAGCCATGAAAT 59.410 37.500 0.00 0.00 0.00 2.17
200 201 6.438425 AGTGAGGAAAAACAGCCATGAAATAT 59.562 34.615 0.00 0.00 0.00 1.28
201 202 6.532657 GTGAGGAAAAACAGCCATGAAATATG 59.467 38.462 0.00 0.00 0.00 1.78
202 203 5.422145 AGGAAAAACAGCCATGAAATATGC 58.578 37.500 0.00 0.00 0.00 3.14
203 204 5.046448 AGGAAAAACAGCCATGAAATATGCA 60.046 36.000 0.00 0.00 0.00 3.96
205 206 6.149142 GGAAAAACAGCCATGAAATATGCAAA 59.851 34.615 0.00 0.00 0.00 3.68
206 207 7.308469 GGAAAAACAGCCATGAAATATGCAAAA 60.308 33.333 0.00 0.00 0.00 2.44
207 208 6.730960 AAACAGCCATGAAATATGCAAAAG 57.269 33.333 0.00 0.00 0.00 2.27
208 209 5.410355 ACAGCCATGAAATATGCAAAAGT 57.590 34.783 0.00 0.00 0.00 2.66
209 210 6.528537 ACAGCCATGAAATATGCAAAAGTA 57.471 33.333 0.00 0.00 0.00 2.24
210 211 6.934056 ACAGCCATGAAATATGCAAAAGTAA 58.066 32.000 0.00 0.00 0.00 2.24
211 212 7.037438 ACAGCCATGAAATATGCAAAAGTAAG 58.963 34.615 0.00 0.00 0.00 2.34
212 213 6.019318 CAGCCATGAAATATGCAAAAGTAAGC 60.019 38.462 0.00 0.00 0.00 3.09
213 214 6.044682 GCCATGAAATATGCAAAAGTAAGCT 58.955 36.000 0.00 0.00 0.00 3.74
214 215 7.068593 AGCCATGAAATATGCAAAAGTAAGCTA 59.931 33.333 0.00 0.00 0.00 3.32
215 216 7.869429 GCCATGAAATATGCAAAAGTAAGCTAT 59.131 33.333 0.00 0.00 0.00 2.97
218 219 9.971922 ATGAAATATGCAAAAGTAAGCTATTCC 57.028 29.630 0.00 0.00 0.00 3.01
219 220 8.965819 TGAAATATGCAAAAGTAAGCTATTCCA 58.034 29.630 0.00 0.00 0.00 3.53
222 223 9.586435 AATATGCAAAAGTAAGCTATTCCAAAC 57.414 29.630 0.00 0.00 0.00 2.93
223 224 6.398234 TGCAAAAGTAAGCTATTCCAAACA 57.602 33.333 0.00 0.00 0.00 2.83
224 225 6.991938 TGCAAAAGTAAGCTATTCCAAACAT 58.008 32.000 0.00 0.00 0.00 2.71
225 226 7.441017 TGCAAAAGTAAGCTATTCCAAACATT 58.559 30.769 0.00 0.00 0.00 2.71
226 227 7.930865 TGCAAAAGTAAGCTATTCCAAACATTT 59.069 29.630 0.00 0.00 0.00 2.32
227 228 9.418045 GCAAAAGTAAGCTATTCCAAACATTTA 57.582 29.630 0.00 0.00 0.00 1.40
236 237 8.757877 AGCTATTCCAAACATTTAAATAGGCAA 58.242 29.630 0.00 0.00 31.93 4.52
237 238 9.377312 GCTATTCCAAACATTTAAATAGGCAAA 57.623 29.630 0.00 0.00 31.93 3.68
253 254 8.647143 AATAGGCAAAAATAATTCGGTGAATG 57.353 30.769 0.00 0.00 32.14 2.67
255 256 5.186797 AGGCAAAAATAATTCGGTGAATGGA 59.813 36.000 0.00 0.00 32.14 3.41
256 257 5.872070 GGCAAAAATAATTCGGTGAATGGAA 59.128 36.000 0.00 0.00 32.14 3.53
257 258 6.183360 GGCAAAAATAATTCGGTGAATGGAAC 60.183 38.462 0.00 0.00 32.14 3.62
258 259 6.589907 GCAAAAATAATTCGGTGAATGGAACT 59.410 34.615 0.00 0.00 32.14 3.01
259 260 7.757624 GCAAAAATAATTCGGTGAATGGAACTA 59.242 33.333 0.00 0.00 32.14 2.24
260 261 9.072294 CAAAAATAATTCGGTGAATGGAACTAC 57.928 33.333 0.00 0.00 32.14 2.73
261 262 6.937436 AATAATTCGGTGAATGGAACTACC 57.063 37.500 0.00 0.00 32.14 3.18
275 276 6.349243 TGGAACTACCAAAATCTACGAAGA 57.651 37.500 0.00 0.00 46.75 2.87
277 278 7.845066 GGAACTACCAAAATCTACGAAGATT 57.155 36.000 0.00 0.00 44.72 2.40
289 290 6.761099 TCTACGAAGATTTCAAGCTAGTCT 57.239 37.500 0.00 0.00 0.00 3.24
291 292 8.453238 TCTACGAAGATTTCAAGCTAGTCTAT 57.547 34.615 0.00 0.00 0.00 1.98
292 293 8.904834 TCTACGAAGATTTCAAGCTAGTCTATT 58.095 33.333 0.00 0.00 0.00 1.73
293 294 7.995463 ACGAAGATTTCAAGCTAGTCTATTC 57.005 36.000 0.00 0.00 0.00 1.75
294 295 7.777095 ACGAAGATTTCAAGCTAGTCTATTCT 58.223 34.615 0.00 0.00 0.00 2.40
295 296 8.254508 ACGAAGATTTCAAGCTAGTCTATTCTT 58.745 33.333 0.00 0.00 0.00 2.52
296 297 9.092876 CGAAGATTTCAAGCTAGTCTATTCTTT 57.907 33.333 0.00 0.00 0.00 2.52
320 321 9.965824 TTTAATAGCATATCTTTTTAGCAAGGC 57.034 29.630 0.00 0.00 0.00 4.35
321 322 7.587037 AATAGCATATCTTTTTAGCAAGGCA 57.413 32.000 0.00 0.00 0.00 4.75
322 323 5.920193 AGCATATCTTTTTAGCAAGGCAA 57.080 34.783 0.00 0.00 0.00 4.52
323 324 6.284891 AGCATATCTTTTTAGCAAGGCAAA 57.715 33.333 0.00 0.00 0.00 3.68
324 325 6.700352 AGCATATCTTTTTAGCAAGGCAAAA 58.300 32.000 0.00 0.00 0.00 2.44
325 326 7.333323 AGCATATCTTTTTAGCAAGGCAAAAT 58.667 30.769 0.00 0.00 0.00 1.82
326 327 8.477256 AGCATATCTTTTTAGCAAGGCAAAATA 58.523 29.630 0.00 0.00 0.00 1.40
327 328 9.264719 GCATATCTTTTTAGCAAGGCAAAATAT 57.735 29.630 0.00 0.00 0.00 1.28
331 332 8.931385 TCTTTTTAGCAAGGCAAAATATCATC 57.069 30.769 0.00 0.00 0.00 2.92
332 333 8.530311 TCTTTTTAGCAAGGCAAAATATCATCA 58.470 29.630 0.00 0.00 0.00 3.07
333 334 9.153721 CTTTTTAGCAAGGCAAAATATCATCAA 57.846 29.630 0.00 0.00 0.00 2.57
334 335 9.669887 TTTTTAGCAAGGCAAAATATCATCAAT 57.330 25.926 0.00 0.00 0.00 2.57
335 336 9.669887 TTTTAGCAAGGCAAAATATCATCAATT 57.330 25.926 0.00 0.00 0.00 2.32
338 339 8.882415 AGCAAGGCAAAATATCATCAATTAAG 57.118 30.769 0.00 0.00 0.00 1.85
339 340 8.698210 AGCAAGGCAAAATATCATCAATTAAGA 58.302 29.630 0.00 0.00 0.00 2.10
340 341 9.316730 GCAAGGCAAAATATCATCAATTAAGAA 57.683 29.630 0.00 0.00 0.00 2.52
348 349 9.770097 AAATATCATCAATTAAGAAGAGAGCGA 57.230 29.630 0.00 0.00 0.00 4.93
349 350 8.984891 ATATCATCAATTAAGAAGAGAGCGAG 57.015 34.615 0.00 0.00 0.00 5.03
350 351 6.456795 TCATCAATTAAGAAGAGAGCGAGA 57.543 37.500 0.00 0.00 0.00 4.04
351 352 6.867550 TCATCAATTAAGAAGAGAGCGAGAA 58.132 36.000 0.00 0.00 0.00 2.87
352 353 7.495901 TCATCAATTAAGAAGAGAGCGAGAAT 58.504 34.615 0.00 0.00 0.00 2.40
353 354 7.984050 TCATCAATTAAGAAGAGAGCGAGAATT 59.016 33.333 0.00 0.00 0.00 2.17
354 355 7.531280 TCAATTAAGAAGAGAGCGAGAATTG 57.469 36.000 0.00 0.00 35.40 2.32
368 369 6.976350 GCGAGAATTGCCTGATTAATTAAC 57.024 37.500 0.00 0.00 40.55 2.01
369 370 5.621228 GCGAGAATTGCCTGATTAATTAACG 59.379 40.000 0.00 0.00 40.55 3.18
370 371 6.136071 CGAGAATTGCCTGATTAATTAACGG 58.864 40.000 0.00 3.18 0.00 4.44
371 372 6.391227 AGAATTGCCTGATTAATTAACGGG 57.609 37.500 15.72 15.72 0.00 5.28
372 373 6.126409 AGAATTGCCTGATTAATTAACGGGA 58.874 36.000 20.74 12.29 32.36 5.14
373 374 6.605594 AGAATTGCCTGATTAATTAACGGGAA 59.394 34.615 20.74 17.84 32.36 3.97
374 375 6.783708 ATTGCCTGATTAATTAACGGGAAA 57.216 33.333 20.74 18.22 32.85 3.13
381 382 5.355910 TGATTAATTAACGGGAAAGAGCACC 59.644 40.000 0.00 0.00 0.00 5.01
413 414 1.003233 GCCACTGACAAGGAGACCC 60.003 63.158 0.00 0.00 0.00 4.46
419 420 1.194781 TGACAAGGAGACCCCAGAGC 61.195 60.000 0.00 0.00 37.41 4.09
445 446 9.988350 CATGGTTACAACTTACAACAGAATATC 57.012 33.333 0.00 0.00 0.00 1.63
485 488 3.303132 CGTGACTTTAACACTGAACCTGC 60.303 47.826 0.00 0.00 36.29 4.85
486 489 3.625764 GTGACTTTAACACTGAACCTGCA 59.374 43.478 0.00 0.00 35.66 4.41
523 526 4.830046 TCTAGACATGCTAGGGATCAACTC 59.170 45.833 18.22 0.00 45.49 3.01
524 527 2.703007 AGACATGCTAGGGATCAACTCC 59.297 50.000 0.00 0.00 44.11 3.85
525 528 2.703007 GACATGCTAGGGATCAACTCCT 59.297 50.000 0.00 0.00 44.28 3.69
526 529 2.703007 ACATGCTAGGGATCAACTCCTC 59.297 50.000 0.00 0.00 44.28 3.71
527 530 1.403814 TGCTAGGGATCAACTCCTCG 58.596 55.000 0.00 0.00 44.28 4.63
528 531 1.342076 TGCTAGGGATCAACTCCTCGT 60.342 52.381 0.00 0.00 44.28 4.18
529 532 1.067821 GCTAGGGATCAACTCCTCGTG 59.932 57.143 0.00 0.00 44.28 4.35
530 533 1.067821 CTAGGGATCAACTCCTCGTGC 59.932 57.143 0.00 0.00 44.28 5.34
531 534 0.616111 AGGGATCAACTCCTCGTGCT 60.616 55.000 0.00 0.00 44.28 4.40
532 535 0.250513 GGGATCAACTCCTCGTGCTT 59.749 55.000 0.00 0.00 44.28 3.91
533 536 1.339151 GGGATCAACTCCTCGTGCTTT 60.339 52.381 0.00 0.00 44.28 3.51
534 537 2.003301 GGATCAACTCCTCGTGCTTTC 58.997 52.381 0.00 0.00 41.29 2.62
535 538 1.656095 GATCAACTCCTCGTGCTTTCG 59.344 52.381 0.00 0.00 0.00 3.46
536 539 0.671796 TCAACTCCTCGTGCTTTCGA 59.328 50.000 0.00 0.00 38.19 3.71
537 540 1.272490 TCAACTCCTCGTGCTTTCGAT 59.728 47.619 0.00 0.00 39.12 3.59
538 541 1.656095 CAACTCCTCGTGCTTTCGATC 59.344 52.381 0.00 0.00 39.12 3.69
539 542 0.888619 ACTCCTCGTGCTTTCGATCA 59.111 50.000 0.00 0.00 39.12 2.92
540 543 1.272781 CTCCTCGTGCTTTCGATCAC 58.727 55.000 0.00 0.00 39.12 3.06
541 544 0.601057 TCCTCGTGCTTTCGATCACA 59.399 50.000 11.69 0.00 39.12 3.58
542 545 0.716108 CCTCGTGCTTTCGATCACAC 59.284 55.000 11.69 7.64 39.12 3.82
545 548 2.528797 GTGCTTTCGATCACACGGT 58.471 52.632 7.75 0.00 33.63 4.83
546 549 1.705256 GTGCTTTCGATCACACGGTA 58.295 50.000 7.75 0.00 33.63 4.02
586 603 4.032672 CAGATGAGACAAAACGATCTCTGC 59.967 45.833 0.00 0.00 41.69 4.26
591 608 3.499918 AGACAAAACGATCTCTGCTTTGG 59.500 43.478 0.00 0.00 32.50 3.28
647 8246 3.119743 ACGCAATGGTCAATTCAGTCATG 60.120 43.478 0.00 0.00 0.00 3.07
719 8318 4.776435 TTCAATGGTCAGATATGGCTGA 57.224 40.909 0.00 0.00 42.31 4.26
743 8349 4.222145 ACGTAATGAGCTAACTCCAAAGGA 59.778 41.667 0.00 0.00 42.74 3.36
783 8391 6.936900 TCTTCTTCAAAACAGGAAGTATCTGG 59.063 38.462 0.00 0.00 41.88 3.86
788 8396 7.118971 CTTCAAAACAGGAAGTATCTGGAAGAG 59.881 40.741 0.00 0.00 40.88 2.85
816 9496 1.078166 AGAGGAGAGCTGCTGGTCA 59.922 57.895 22.47 0.00 42.66 4.02
941 20312 4.154918 CCTTCAACAAGCTCATCTACCAAC 59.845 45.833 0.00 0.00 0.00 3.77
953 20324 4.042311 TCATCTACCAACCCAGCAAACTAA 59.958 41.667 0.00 0.00 0.00 2.24
956 20327 3.812156 ACCAACCCAGCAAACTAAAAC 57.188 42.857 0.00 0.00 0.00 2.43
966 20337 2.036733 GCAAACTAAAACCCCACTTCCC 59.963 50.000 0.00 0.00 0.00 3.97
981 20352 3.070015 CACTTCCCAAGCAAACAATTCCT 59.930 43.478 0.00 0.00 0.00 3.36
984 20355 4.380843 TCCCAAGCAAACAATTCCTAGA 57.619 40.909 0.00 0.00 0.00 2.43
985 20384 4.079253 TCCCAAGCAAACAATTCCTAGAC 58.921 43.478 0.00 0.00 0.00 2.59
990 20389 5.948992 AGCAAACAATTCCTAGACAAGAC 57.051 39.130 0.00 0.00 0.00 3.01
991 20390 5.376625 AGCAAACAATTCCTAGACAAGACA 58.623 37.500 0.00 0.00 0.00 3.41
992 20391 5.239525 AGCAAACAATTCCTAGACAAGACAC 59.760 40.000 0.00 0.00 0.00 3.67
1005 20404 1.610038 CAAGACACTGCTCAAATGGCA 59.390 47.619 0.00 0.00 38.10 4.92
1107 20506 3.077556 GAAGAGCTCGGCCTCCCA 61.078 66.667 8.37 0.00 32.17 4.37
1170 20569 0.674534 ACTGTGAGACTGGGTTCGTC 59.325 55.000 0.00 0.00 0.00 4.20
1177 20576 2.359531 GAGACTGGGTTCGTCTGGATAG 59.640 54.545 0.00 0.00 41.53 2.08
1179 20578 2.099427 GACTGGGTTCGTCTGGATAGTC 59.901 54.545 0.00 0.00 0.00 2.59
1197 20596 7.235606 TGGATAGTCCAGAAGAAGAAGAAAGAA 59.764 37.037 0.00 0.00 42.67 2.52
1203 20602 5.586243 CCAGAAGAAGAAGAAAGAACACACA 59.414 40.000 0.00 0.00 0.00 3.72
1207 20606 6.625873 AGAAGAAGAAAGAACACACATTCC 57.374 37.500 0.00 0.00 0.00 3.01
1208 20607 5.237344 AGAAGAAGAAAGAACACACATTCCG 59.763 40.000 0.00 0.00 0.00 4.30
1272 20671 2.496899 TTGTGGAGAAGGGCAAGATC 57.503 50.000 0.00 0.00 0.00 2.75
1276 20675 1.283029 TGGAGAAGGGCAAGATCAAGG 59.717 52.381 0.00 0.00 0.00 3.61
1301 20700 2.107141 CGGGGTCAAGATCGAGGC 59.893 66.667 0.00 0.00 0.00 4.70
1322 20724 1.135228 GCTCTCTTTGGTCGAGGTCTC 60.135 57.143 0.00 0.00 0.00 3.36
1353 20755 4.093011 AGTCTTCTGCTGATAAGGTCACT 58.907 43.478 0.00 0.00 32.22 3.41
1393 20795 0.391661 GTCTGACACCCATGATGCGT 60.392 55.000 2.24 0.00 0.00 5.24
1397 20799 3.576356 CACCCATGATGCGTCCGC 61.576 66.667 4.42 4.42 42.35 5.54
1428 20830 2.829120 CTGGGAATAGGGAGCTACTAGC 59.171 54.545 0.00 0.00 42.84 3.42
1472 20874 2.037902 TCAGTGAATGGTTCGGCACTAA 59.962 45.455 0.00 0.00 39.40 2.24
1473 20875 2.416547 CAGTGAATGGTTCGGCACTAAG 59.583 50.000 0.00 0.00 39.40 2.18
1474 20876 2.038557 AGTGAATGGTTCGGCACTAAGT 59.961 45.455 0.00 0.00 39.61 2.24
1476 20878 3.071479 TGAATGGTTCGGCACTAAGTTC 58.929 45.455 0.00 0.00 0.00 3.01
1477 20879 2.851263 ATGGTTCGGCACTAAGTTCA 57.149 45.000 0.00 0.00 0.00 3.18
1478 20880 1.873698 TGGTTCGGCACTAAGTTCAC 58.126 50.000 0.00 0.00 0.00 3.18
1479 20881 0.788391 GGTTCGGCACTAAGTTCACG 59.212 55.000 0.00 0.00 0.00 4.35
1480 20882 1.494824 GTTCGGCACTAAGTTCACGT 58.505 50.000 0.00 0.00 0.00 4.49
1481 20883 1.191647 GTTCGGCACTAAGTTCACGTG 59.808 52.381 9.94 9.94 0.00 4.49
1482 20884 0.386476 TCGGCACTAAGTTCACGTGT 59.614 50.000 16.51 0.00 0.00 4.49
1484 20886 2.034432 TCGGCACTAAGTTCACGTGTTA 59.966 45.455 16.51 6.20 0.00 2.41
1485 20887 2.991190 CGGCACTAAGTTCACGTGTTAT 59.009 45.455 16.51 3.41 0.00 1.89
1486 20888 3.181534 CGGCACTAAGTTCACGTGTTATG 60.182 47.826 16.51 6.86 0.00 1.90
1507 20910 8.548721 GTTATGGAGAAGTATATGTTTCCGTTG 58.451 37.037 0.00 0.00 0.00 4.10
1529 21011 9.274065 CGTTGTCTTTGTAATCTAATAAAAGGC 57.726 33.333 0.00 0.00 33.99 4.35
1532 21014 8.458843 TGTCTTTGTAATCTAATAAAAGGCTGC 58.541 33.333 0.00 0.00 34.39 5.25
1534 21016 9.899661 TCTTTGTAATCTAATAAAAGGCTGCTA 57.100 29.630 0.00 0.00 0.00 3.49
1566 21048 0.398696 TTCCTTTCAGCCCGTAAGCA 59.601 50.000 0.00 0.00 34.23 3.91
1602 38027 9.772973 TGTAATGAATAACACTTATATCGCCTT 57.227 29.630 0.00 0.00 0.00 4.35
1614 38039 7.068839 CACTTATATCGCCTTCTATATCCCACT 59.931 40.741 0.00 0.00 0.00 4.00
1675 38103 2.237143 TGTGTGAGAGAATAAGGGCCTG 59.763 50.000 6.92 0.00 0.00 4.85
1774 38202 7.119709 TCTCGGTATCTGGATTTTCATGTTA 57.880 36.000 0.00 0.00 0.00 2.41
1820 38248 7.410120 AGATGTATGTTGTATCAGTGTCTCA 57.590 36.000 0.00 0.00 0.00 3.27
1821 38249 7.840931 AGATGTATGTTGTATCAGTGTCTCAA 58.159 34.615 0.00 0.00 0.00 3.02
1822 38250 8.314021 AGATGTATGTTGTATCAGTGTCTCAAA 58.686 33.333 0.00 0.00 0.00 2.69
1823 38251 7.652300 TGTATGTTGTATCAGTGTCTCAAAC 57.348 36.000 0.00 0.00 0.00 2.93
1906 38339 9.737427 TTTGTTGATTTTATTGTTCTCGCTAAA 57.263 25.926 0.00 0.00 0.00 1.85
1932 38365 9.664332 AATCAGATAATCGGAGATTATTTCCAG 57.336 33.333 14.24 5.97 45.12 3.86
1966 38400 8.284557 TCAGATCGATGTGAAAAACATTTTTG 57.715 30.769 21.78 0.00 44.51 2.44
1967 38401 7.381948 TCAGATCGATGTGAAAAACATTTTTGG 59.618 33.333 21.78 0.00 44.51 3.28
1999 38438 5.514914 AGGCACATATTTTTATGCGAAAACG 59.485 36.000 0.00 0.00 39.02 3.60
2011 38453 2.673862 TGCGAAAACGACTTGTCTTGAA 59.326 40.909 0.00 0.00 0.00 2.69
2050 38492 6.088824 ACTAAAAGATTGCTGAGAAAATGCG 58.911 36.000 0.00 0.00 0.00 4.73
2058 38501 3.058016 TGCTGAGAAAATGCGAAGGAAAG 60.058 43.478 0.00 0.00 0.00 2.62
2061 38505 5.762045 CTGAGAAAATGCGAAGGAAAGAAA 58.238 37.500 0.00 0.00 0.00 2.52
2063 38507 6.568869 TGAGAAAATGCGAAGGAAAGAAAAA 58.431 32.000 0.00 0.00 0.00 1.94
2064 38508 6.475402 TGAGAAAATGCGAAGGAAAGAAAAAC 59.525 34.615 0.00 0.00 0.00 2.43
2065 38509 5.458779 AGAAAATGCGAAGGAAAGAAAAACG 59.541 36.000 0.00 0.00 0.00 3.60
2082 38526 2.052782 ACGGGACAAAAGCAGAAACT 57.947 45.000 0.00 0.00 0.00 2.66
2090 38534 5.221048 GGACAAAAGCAGAAACTAGAGCAAA 60.221 40.000 0.00 0.00 0.00 3.68
2093 38537 3.778954 AGCAGAAACTAGAGCAAACCT 57.221 42.857 0.00 0.00 0.00 3.50
2094 38538 3.669536 AGCAGAAACTAGAGCAAACCTC 58.330 45.455 0.00 0.00 41.07 3.85
2107 38551 3.068165 AGCAAACCTCAACTAGCCAAAAC 59.932 43.478 0.00 0.00 0.00 2.43
2108 38552 3.798889 GCAAACCTCAACTAGCCAAAACC 60.799 47.826 0.00 0.00 0.00 3.27
2118 38562 6.932960 TCAACTAGCCAAAACCTAAGAACTAC 59.067 38.462 0.00 0.00 0.00 2.73
2119 38563 5.802465 ACTAGCCAAAACCTAAGAACTACC 58.198 41.667 0.00 0.00 0.00 3.18
2125 38569 6.183360 GCCAAAACCTAAGAACTACCAAAAGT 60.183 38.462 0.00 0.00 0.00 2.66
2132 38576 6.151144 CCTAAGAACTACCAAAAGTGAATGGG 59.849 42.308 0.00 0.00 41.17 4.00
2170 38622 1.656587 AACTCCTACTGCCATGGTCA 58.343 50.000 14.67 10.98 0.00 4.02
2179 38641 4.349682 CCATGGTCAAGGCTGCAT 57.650 55.556 2.57 0.00 0.00 3.96
2180 38642 1.813859 CCATGGTCAAGGCTGCATG 59.186 57.895 2.57 0.00 0.00 4.06
2181 38643 0.681887 CCATGGTCAAGGCTGCATGA 60.682 55.000 2.57 2.34 29.28 3.07
2182 38644 1.399714 CATGGTCAAGGCTGCATGAT 58.600 50.000 10.01 0.00 29.28 2.45
2183 38645 1.337071 CATGGTCAAGGCTGCATGATC 59.663 52.381 10.01 10.03 29.28 2.92
2184 38646 0.328926 TGGTCAAGGCTGCATGATCA 59.671 50.000 14.28 14.28 34.42 2.92
2185 38647 1.064240 TGGTCAAGGCTGCATGATCAT 60.064 47.619 14.28 1.18 31.95 2.45
2186 38648 1.607628 GGTCAAGGCTGCATGATCATC 59.392 52.381 4.86 1.82 0.00 2.92
2232 38853 5.890334 TCAGGTTGATGTGAAAACAAGTTC 58.110 37.500 0.00 0.00 0.00 3.01
2234 38855 4.099419 AGGTTGATGTGAAAACAAGTTCCC 59.901 41.667 0.00 0.00 0.00 3.97
2273 38895 7.992754 ATTCCATCATTACATCTCTAAAGGC 57.007 36.000 0.00 0.00 0.00 4.35
2280 38902 7.175104 TCATTACATCTCTAAAGGCTTGGTTT 58.825 34.615 0.00 0.00 0.00 3.27
2284 38906 3.412386 TCTCTAAAGGCTTGGTTTCAGC 58.588 45.455 0.00 0.00 0.00 4.26
2298 38920 3.313690 GTTTCAGCCAACATAAAACGGG 58.686 45.455 0.00 0.00 0.00 5.28
2327 38960 4.079970 TCACCGTCTACTCAGTTGAGAAT 58.920 43.478 15.63 0.00 44.74 2.40
2334 38967 3.064900 ACTCAGTTGAGAATGGGAAGC 57.935 47.619 15.63 0.00 44.74 3.86
2336 38969 0.449388 CAGTTGAGAATGGGAAGCGC 59.551 55.000 0.00 0.00 0.00 5.92
2370 39006 6.998673 AGTTAGTTTGAGGCTAAGTTTGTGAT 59.001 34.615 0.00 0.00 30.40 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.820787 CGTTCTCAACTGAGTAGAGGGT 59.179 50.000 6.61 0.00 42.60 4.34
10 11 2.164624 CCGTTCTCAACTGAGTAGAGGG 59.835 54.545 6.61 5.95 42.60 4.30
13 14 3.150458 TCCCGTTCTCAACTGAGTAGA 57.850 47.619 6.61 0.00 42.60 2.59
14 15 3.367498 CCTTCCCGTTCTCAACTGAGTAG 60.367 52.174 6.61 0.52 42.60 2.57
15 16 2.561419 CCTTCCCGTTCTCAACTGAGTA 59.439 50.000 6.61 0.00 42.60 2.59
16 17 1.344763 CCTTCCCGTTCTCAACTGAGT 59.655 52.381 6.61 0.00 42.60 3.41
17 18 1.338200 CCCTTCCCGTTCTCAACTGAG 60.338 57.143 0.00 0.00 43.36 3.35
21 22 2.301009 TCTAACCCTTCCCGTTCTCAAC 59.699 50.000 0.00 0.00 0.00 3.18
22 23 2.612000 TCTAACCCTTCCCGTTCTCAA 58.388 47.619 0.00 0.00 0.00 3.02
24 25 3.690475 TTTCTAACCCTTCCCGTTCTC 57.310 47.619 0.00 0.00 0.00 2.87
25 26 4.652679 AATTTCTAACCCTTCCCGTTCT 57.347 40.909 0.00 0.00 0.00 3.01
26 27 5.494724 ACTAATTTCTAACCCTTCCCGTTC 58.505 41.667 0.00 0.00 0.00 3.95
27 28 5.509832 ACTAATTTCTAACCCTTCCCGTT 57.490 39.130 0.00 0.00 0.00 4.44
28 29 5.509832 AACTAATTTCTAACCCTTCCCGT 57.490 39.130 0.00 0.00 0.00 5.28
29 30 6.647229 ACTAACTAATTTCTAACCCTTCCCG 58.353 40.000 0.00 0.00 0.00 5.14
42 43 9.529325 GCCTCAAAAGTCAAAACTAACTAATTT 57.471 29.630 0.00 0.00 33.48 1.82
43 44 8.914011 AGCCTCAAAAGTCAAAACTAACTAATT 58.086 29.630 0.00 0.00 33.48 1.40
44 45 8.465273 AGCCTCAAAAGTCAAAACTAACTAAT 57.535 30.769 0.00 0.00 33.48 1.73
45 46 7.875327 AGCCTCAAAAGTCAAAACTAACTAA 57.125 32.000 0.00 0.00 33.48 2.24
46 47 8.967664 TTAGCCTCAAAAGTCAAAACTAACTA 57.032 30.769 0.00 0.00 33.48 2.24
47 48 7.556635 ACTTAGCCTCAAAAGTCAAAACTAACT 59.443 33.333 0.00 0.00 33.48 2.24
48 49 7.704271 ACTTAGCCTCAAAAGTCAAAACTAAC 58.296 34.615 0.00 0.00 33.48 2.34
49 50 7.875327 ACTTAGCCTCAAAAGTCAAAACTAA 57.125 32.000 0.00 0.00 33.48 2.24
50 51 7.875327 AACTTAGCCTCAAAAGTCAAAACTA 57.125 32.000 0.00 0.00 34.91 2.24
51 52 6.775594 AACTTAGCCTCAAAAGTCAAAACT 57.224 33.333 0.00 0.00 34.91 2.66
52 53 6.811665 ACAAACTTAGCCTCAAAAGTCAAAAC 59.188 34.615 0.00 0.00 34.91 2.43
53 54 6.930731 ACAAACTTAGCCTCAAAAGTCAAAA 58.069 32.000 0.00 0.00 34.91 2.44
54 55 6.151985 TGACAAACTTAGCCTCAAAAGTCAAA 59.848 34.615 0.00 0.00 34.91 2.69
55 56 5.650266 TGACAAACTTAGCCTCAAAAGTCAA 59.350 36.000 0.00 0.00 34.91 3.18
56 57 5.065988 GTGACAAACTTAGCCTCAAAAGTCA 59.934 40.000 0.00 0.00 34.91 3.41
57 58 5.065988 TGTGACAAACTTAGCCTCAAAAGTC 59.934 40.000 0.00 0.00 34.91 3.01
58 59 4.947388 TGTGACAAACTTAGCCTCAAAAGT 59.053 37.500 0.00 0.00 37.54 2.66
59 60 5.066505 ACTGTGACAAACTTAGCCTCAAAAG 59.933 40.000 0.00 0.00 0.00 2.27
60 61 4.947388 ACTGTGACAAACTTAGCCTCAAAA 59.053 37.500 0.00 0.00 0.00 2.44
66 67 4.893424 TTCAACTGTGACAAACTTAGCC 57.107 40.909 0.00 0.00 31.90 3.93
68 69 6.498304 AGCATTTCAACTGTGACAAACTTAG 58.502 36.000 0.00 0.00 31.90 2.18
70 71 5.329035 AGCATTTCAACTGTGACAAACTT 57.671 34.783 0.00 0.00 31.90 2.66
73 74 9.979578 ATAATTTAGCATTTCAACTGTGACAAA 57.020 25.926 0.00 0.00 31.90 2.83
74 75 9.624697 GATAATTTAGCATTTCAACTGTGACAA 57.375 29.630 0.00 0.00 31.90 3.18
75 76 9.013229 AGATAATTTAGCATTTCAACTGTGACA 57.987 29.630 0.00 0.00 31.90 3.58
98 99 8.704668 GGTATTTTCCCCATCAAATTGTAAGAT 58.295 33.333 0.00 0.00 0.00 2.40
99 100 7.898636 AGGTATTTTCCCCATCAAATTGTAAGA 59.101 33.333 0.00 0.00 0.00 2.10
101 102 9.722317 ATAGGTATTTTCCCCATCAAATTGTAA 57.278 29.630 0.00 0.00 0.00 2.41
103 104 9.722317 TTATAGGTATTTTCCCCATCAAATTGT 57.278 29.630 0.00 0.00 0.00 2.71
108 109 9.207868 CCTTTTTATAGGTATTTTCCCCATCAA 57.792 33.333 0.00 0.00 0.00 2.57
109 110 7.289084 GCCTTTTTATAGGTATTTTCCCCATCA 59.711 37.037 0.00 0.00 37.63 3.07
110 111 7.509318 AGCCTTTTTATAGGTATTTTCCCCATC 59.491 37.037 0.00 0.00 37.63 3.51
112 113 6.747931 AGCCTTTTTATAGGTATTTTCCCCA 58.252 36.000 0.00 0.00 37.63 4.96
113 114 8.771521 TTAGCCTTTTTATAGGTATTTTCCCC 57.228 34.615 0.00 0.00 37.63 4.81
114 115 8.358148 GCTTAGCCTTTTTATAGGTATTTTCCC 58.642 37.037 0.00 0.00 37.63 3.97
115 116 9.132923 AGCTTAGCCTTTTTATAGGTATTTTCC 57.867 33.333 0.00 0.00 37.63 3.13
122 123 9.868160 AATCATAAGCTTAGCCTTTTTATAGGT 57.132 29.630 12.54 0.00 37.63 3.08
126 127 8.242729 AGCAATCATAAGCTTAGCCTTTTTAT 57.757 30.769 12.54 0.00 38.01 1.40
128 129 6.535963 AGCAATCATAAGCTTAGCCTTTTT 57.464 33.333 12.54 0.00 38.01 1.94
129 130 7.645058 TTAGCAATCATAAGCTTAGCCTTTT 57.355 32.000 12.54 0.00 42.05 2.27
130 131 7.340487 AGTTTAGCAATCATAAGCTTAGCCTTT 59.660 33.333 12.54 0.68 42.05 3.11
131 132 6.830838 AGTTTAGCAATCATAAGCTTAGCCTT 59.169 34.615 12.54 2.23 42.05 4.35
132 133 6.360618 AGTTTAGCAATCATAAGCTTAGCCT 58.639 36.000 12.54 4.40 42.05 4.58
133 134 6.625873 AGTTTAGCAATCATAAGCTTAGCC 57.374 37.500 12.54 0.00 42.05 3.93
134 135 8.233190 CCATAGTTTAGCAATCATAAGCTTAGC 58.767 37.037 12.54 9.24 42.05 3.09
135 136 9.494271 TCCATAGTTTAGCAATCATAAGCTTAG 57.506 33.333 12.54 4.65 42.05 2.18
137 138 8.930846 ATCCATAGTTTAGCAATCATAAGCTT 57.069 30.769 3.48 3.48 42.05 3.74
138 139 8.930846 AATCCATAGTTTAGCAATCATAAGCT 57.069 30.769 0.00 0.00 44.55 3.74
165 166 7.494298 GGCTGTTTTTCCTCACTAAATTGAAAA 59.506 33.333 0.00 0.00 34.22 2.29
166 167 6.983890 GGCTGTTTTTCCTCACTAAATTGAAA 59.016 34.615 0.00 0.00 0.00 2.69
167 168 6.097554 TGGCTGTTTTTCCTCACTAAATTGAA 59.902 34.615 0.00 0.00 0.00 2.69
169 170 5.841810 TGGCTGTTTTTCCTCACTAAATTG 58.158 37.500 0.00 0.00 0.00 2.32
170 171 6.267471 TCATGGCTGTTTTTCCTCACTAAATT 59.733 34.615 0.00 0.00 0.00 1.82
171 172 5.774690 TCATGGCTGTTTTTCCTCACTAAAT 59.225 36.000 0.00 0.00 0.00 1.40
172 173 5.136828 TCATGGCTGTTTTTCCTCACTAAA 58.863 37.500 0.00 0.00 0.00 1.85
173 174 4.724399 TCATGGCTGTTTTTCCTCACTAA 58.276 39.130 0.00 0.00 0.00 2.24
174 175 4.365514 TCATGGCTGTTTTTCCTCACTA 57.634 40.909 0.00 0.00 0.00 2.74
176 177 4.320608 TTTCATGGCTGTTTTTCCTCAC 57.679 40.909 0.00 0.00 0.00 3.51
177 178 6.632909 CATATTTCATGGCTGTTTTTCCTCA 58.367 36.000 0.00 0.00 0.00 3.86
179 180 5.046448 TGCATATTTCATGGCTGTTTTTCCT 60.046 36.000 0.00 0.00 0.00 3.36
180 181 5.177326 TGCATATTTCATGGCTGTTTTTCC 58.823 37.500 0.00 0.00 0.00 3.13
182 183 7.229106 ACTTTTGCATATTTCATGGCTGTTTTT 59.771 29.630 0.00 0.00 0.00 1.94
184 185 6.232692 ACTTTTGCATATTTCATGGCTGTTT 58.767 32.000 0.00 0.00 0.00 2.83
185 186 5.797051 ACTTTTGCATATTTCATGGCTGTT 58.203 33.333 0.00 0.00 0.00 3.16
186 187 5.410355 ACTTTTGCATATTTCATGGCTGT 57.590 34.783 0.00 0.00 0.00 4.40
187 188 6.019318 GCTTACTTTTGCATATTTCATGGCTG 60.019 38.462 0.00 0.00 0.00 4.85
188 189 6.044682 GCTTACTTTTGCATATTTCATGGCT 58.955 36.000 0.00 0.00 0.00 4.75
190 191 9.754382 AATAGCTTACTTTTGCATATTTCATGG 57.246 29.630 0.00 0.00 0.00 3.66
192 193 9.971922 GGAATAGCTTACTTTTGCATATTTCAT 57.028 29.630 0.00 0.00 0.00 2.57
194 195 9.801873 TTGGAATAGCTTACTTTTGCATATTTC 57.198 29.630 0.00 0.00 35.69 2.17
196 197 9.586435 GTTTGGAATAGCTTACTTTTGCATATT 57.414 29.630 0.00 0.00 35.69 1.28
197 198 8.748412 TGTTTGGAATAGCTTACTTTTGCATAT 58.252 29.630 0.00 0.00 35.69 1.78
198 199 8.116651 TGTTTGGAATAGCTTACTTTTGCATA 57.883 30.769 0.00 0.00 35.69 3.14
200 201 6.398234 TGTTTGGAATAGCTTACTTTTGCA 57.602 33.333 0.00 0.00 34.34 4.08
201 202 7.889589 AATGTTTGGAATAGCTTACTTTTGC 57.110 32.000 0.00 0.00 0.00 3.68
209 210 8.757877 TGCCTATTTAAATGTTTGGAATAGCTT 58.242 29.630 11.05 0.00 32.38 3.74
210 211 8.305046 TGCCTATTTAAATGTTTGGAATAGCT 57.695 30.769 11.05 0.00 32.38 3.32
211 212 8.940768 TTGCCTATTTAAATGTTTGGAATAGC 57.059 30.769 11.05 0.39 32.38 2.97
227 228 9.097257 CATTCACCGAATTATTTTTGCCTATTT 57.903 29.630 0.00 0.00 28.87 1.40
229 230 7.069331 TCCATTCACCGAATTATTTTTGCCTAT 59.931 33.333 0.00 0.00 28.87 2.57
230 231 6.378564 TCCATTCACCGAATTATTTTTGCCTA 59.621 34.615 0.00 0.00 28.87 3.93
231 232 5.186797 TCCATTCACCGAATTATTTTTGCCT 59.813 36.000 0.00 0.00 28.87 4.75
233 234 6.589907 AGTTCCATTCACCGAATTATTTTTGC 59.410 34.615 0.00 0.00 28.87 3.68
234 235 9.072294 GTAGTTCCATTCACCGAATTATTTTTG 57.928 33.333 0.00 0.00 28.87 2.44
236 237 7.394923 TGGTAGTTCCATTCACCGAATTATTTT 59.605 33.333 0.00 0.00 41.93 1.82
237 238 6.887545 TGGTAGTTCCATTCACCGAATTATTT 59.112 34.615 0.00 0.00 41.93 1.40
238 239 6.419791 TGGTAGTTCCATTCACCGAATTATT 58.580 36.000 0.00 0.00 41.93 1.40
239 240 5.996644 TGGTAGTTCCATTCACCGAATTAT 58.003 37.500 0.00 0.00 41.93 1.28
240 241 5.423704 TGGTAGTTCCATTCACCGAATTA 57.576 39.130 0.00 0.00 41.93 1.40
243 244 3.773418 TTGGTAGTTCCATTCACCGAA 57.227 42.857 0.00 0.00 46.60 4.30
246 247 6.183360 CGTAGATTTTGGTAGTTCCATTCACC 60.183 42.308 0.00 0.00 46.60 4.02
249 250 7.548075 TCTTCGTAGATTTTGGTAGTTCCATTC 59.452 37.037 0.00 0.00 41.11 2.67
251 252 6.942976 TCTTCGTAGATTTTGGTAGTTCCAT 58.057 36.000 0.00 0.00 41.11 3.41
252 253 6.349243 TCTTCGTAGATTTTGGTAGTTCCA 57.651 37.500 0.00 0.00 40.09 3.53
253 254 7.845066 AATCTTCGTAGATTTTGGTAGTTCC 57.155 36.000 11.12 0.00 46.53 3.62
266 267 6.761099 AGACTAGCTTGAAATCTTCGTAGA 57.239 37.500 1.04 0.00 34.21 2.59
269 270 7.777095 AGAATAGACTAGCTTGAAATCTTCGT 58.223 34.615 1.04 0.00 0.00 3.85
294 295 9.965824 GCCTTGCTAAAAAGATATGCTATTAAA 57.034 29.630 0.00 0.00 0.00 1.52
295 296 9.130661 TGCCTTGCTAAAAAGATATGCTATTAA 57.869 29.630 0.00 0.00 0.00 1.40
296 297 8.690203 TGCCTTGCTAAAAAGATATGCTATTA 57.310 30.769 0.00 0.00 0.00 0.98
299 300 7.403312 TTTGCCTTGCTAAAAAGATATGCTA 57.597 32.000 0.00 0.00 0.00 3.49
301 302 6.966435 TTTTGCCTTGCTAAAAAGATATGC 57.034 33.333 0.00 0.00 31.38 3.14
306 307 8.530311 TGATGATATTTTGCCTTGCTAAAAAGA 58.470 29.630 0.26 0.00 36.93 2.52
308 309 9.669887 ATTGATGATATTTTGCCTTGCTAAAAA 57.330 25.926 0.26 0.00 36.93 1.94
309 310 9.669887 AATTGATGATATTTTGCCTTGCTAAAA 57.330 25.926 0.26 0.00 36.93 1.52
312 313 9.970395 CTTAATTGATGATATTTTGCCTTGCTA 57.030 29.630 0.00 0.00 0.00 3.49
313 314 8.698210 TCTTAATTGATGATATTTTGCCTTGCT 58.302 29.630 0.00 0.00 0.00 3.91
314 315 8.876275 TCTTAATTGATGATATTTTGCCTTGC 57.124 30.769 0.00 0.00 0.00 4.01
322 323 9.770097 TCGCTCTCTTCTTAATTGATGATATTT 57.230 29.630 0.00 0.00 0.00 1.40
323 324 9.421806 CTCGCTCTCTTCTTAATTGATGATATT 57.578 33.333 0.00 0.00 0.00 1.28
324 325 8.801299 TCTCGCTCTCTTCTTAATTGATGATAT 58.199 33.333 0.00 0.00 0.00 1.63
325 326 8.171164 TCTCGCTCTCTTCTTAATTGATGATA 57.829 34.615 0.00 0.00 0.00 2.15
326 327 7.048629 TCTCGCTCTCTTCTTAATTGATGAT 57.951 36.000 0.00 0.00 0.00 2.45
327 328 6.456795 TCTCGCTCTCTTCTTAATTGATGA 57.543 37.500 0.00 0.00 0.00 2.92
328 329 7.712264 ATTCTCGCTCTCTTCTTAATTGATG 57.288 36.000 0.00 0.00 0.00 3.07
329 330 7.254727 GCAATTCTCGCTCTCTTCTTAATTGAT 60.255 37.037 0.00 0.00 35.92 2.57
330 331 6.036517 GCAATTCTCGCTCTCTTCTTAATTGA 59.963 38.462 0.00 0.00 35.92 2.57
331 332 6.190962 GCAATTCTCGCTCTCTTCTTAATTG 58.809 40.000 0.00 0.00 36.58 2.32
332 333 5.295540 GGCAATTCTCGCTCTCTTCTTAATT 59.704 40.000 0.00 0.00 0.00 1.40
333 334 4.813697 GGCAATTCTCGCTCTCTTCTTAAT 59.186 41.667 0.00 0.00 0.00 1.40
334 335 4.081420 AGGCAATTCTCGCTCTCTTCTTAA 60.081 41.667 0.00 0.00 0.00 1.85
335 336 3.449018 AGGCAATTCTCGCTCTCTTCTTA 59.551 43.478 0.00 0.00 0.00 2.10
336 337 2.235898 AGGCAATTCTCGCTCTCTTCTT 59.764 45.455 0.00 0.00 0.00 2.52
337 338 1.830477 AGGCAATTCTCGCTCTCTTCT 59.170 47.619 0.00 0.00 0.00 2.85
338 339 1.932511 CAGGCAATTCTCGCTCTCTTC 59.067 52.381 0.00 0.00 0.00 2.87
339 340 1.552337 TCAGGCAATTCTCGCTCTCTT 59.448 47.619 0.00 0.00 0.00 2.85
340 341 1.189752 TCAGGCAATTCTCGCTCTCT 58.810 50.000 0.00 0.00 0.00 3.10
341 342 2.237393 ATCAGGCAATTCTCGCTCTC 57.763 50.000 0.00 0.00 0.00 3.20
342 343 2.706339 AATCAGGCAATTCTCGCTCT 57.294 45.000 0.00 0.00 0.00 4.09
343 344 5.429957 AATTAATCAGGCAATTCTCGCTC 57.570 39.130 0.00 0.00 0.00 5.03
344 345 6.511767 CGTTAATTAATCAGGCAATTCTCGCT 60.512 38.462 0.31 0.00 0.00 4.93
345 346 5.621228 CGTTAATTAATCAGGCAATTCTCGC 59.379 40.000 0.31 0.00 0.00 5.03
346 347 6.136071 CCGTTAATTAATCAGGCAATTCTCG 58.864 40.000 0.31 0.00 0.00 4.04
347 348 6.262273 TCCCGTTAATTAATCAGGCAATTCTC 59.738 38.462 0.31 0.00 0.00 2.87
348 349 6.126409 TCCCGTTAATTAATCAGGCAATTCT 58.874 36.000 0.31 0.00 0.00 2.40
349 350 6.385649 TCCCGTTAATTAATCAGGCAATTC 57.614 37.500 0.31 0.00 0.00 2.17
350 351 6.783708 TTCCCGTTAATTAATCAGGCAATT 57.216 33.333 0.31 0.00 0.00 2.32
351 352 6.605594 TCTTTCCCGTTAATTAATCAGGCAAT 59.394 34.615 0.31 0.00 0.00 3.56
352 353 5.946972 TCTTTCCCGTTAATTAATCAGGCAA 59.053 36.000 0.31 0.00 0.00 4.52
353 354 5.502079 TCTTTCCCGTTAATTAATCAGGCA 58.498 37.500 0.31 0.00 0.00 4.75
354 355 5.505819 GCTCTTTCCCGTTAATTAATCAGGC 60.506 44.000 0.31 0.00 0.00 4.85
355 356 5.588648 TGCTCTTTCCCGTTAATTAATCAGG 59.411 40.000 0.31 5.88 0.00 3.86
356 357 6.458342 GGTGCTCTTTCCCGTTAATTAATCAG 60.458 42.308 0.31 0.00 0.00 2.90
357 358 5.355910 GGTGCTCTTTCCCGTTAATTAATCA 59.644 40.000 0.31 0.00 0.00 2.57
358 359 5.355910 TGGTGCTCTTTCCCGTTAATTAATC 59.644 40.000 0.31 0.00 0.00 1.75
359 360 5.258051 TGGTGCTCTTTCCCGTTAATTAAT 58.742 37.500 0.31 0.00 0.00 1.40
360 361 4.653868 TGGTGCTCTTTCCCGTTAATTAA 58.346 39.130 0.00 0.00 0.00 1.40
361 362 4.258543 CTGGTGCTCTTTCCCGTTAATTA 58.741 43.478 0.00 0.00 0.00 1.40
362 363 3.081804 CTGGTGCTCTTTCCCGTTAATT 58.918 45.455 0.00 0.00 0.00 1.40
363 364 2.711542 CTGGTGCTCTTTCCCGTTAAT 58.288 47.619 0.00 0.00 0.00 1.40
364 365 1.880646 GCTGGTGCTCTTTCCCGTTAA 60.881 52.381 0.00 0.00 36.03 2.01
365 366 0.321298 GCTGGTGCTCTTTCCCGTTA 60.321 55.000 0.00 0.00 36.03 3.18
366 367 1.600916 GCTGGTGCTCTTTCCCGTT 60.601 57.895 0.00 0.00 36.03 4.44
367 368 2.032681 GCTGGTGCTCTTTCCCGT 59.967 61.111 0.00 0.00 36.03 5.28
368 369 3.121030 CGCTGGTGCTCTTTCCCG 61.121 66.667 0.00 0.00 36.97 5.14
369 370 2.035442 GTCGCTGGTGCTCTTTCCC 61.035 63.158 0.00 0.00 36.97 3.97
370 371 2.035442 GGTCGCTGGTGCTCTTTCC 61.035 63.158 0.00 0.00 36.97 3.13
371 372 2.383527 CGGTCGCTGGTGCTCTTTC 61.384 63.158 0.00 0.00 36.97 2.62
372 373 2.357517 CGGTCGCTGGTGCTCTTT 60.358 61.111 0.00 0.00 36.97 2.52
373 374 3.303135 TCGGTCGCTGGTGCTCTT 61.303 61.111 0.00 0.00 36.97 2.85
374 375 4.057428 GTCGGTCGCTGGTGCTCT 62.057 66.667 0.00 0.00 36.97 4.09
419 420 9.988350 GATATTCTGTTGTAAGTTGTAACCATG 57.012 33.333 0.00 0.00 0.00 3.66
427 428 6.477033 CCTCTCCGATATTCTGTTGTAAGTTG 59.523 42.308 0.00 0.00 0.00 3.16
428 429 6.154706 ACCTCTCCGATATTCTGTTGTAAGTT 59.845 38.462 0.00 0.00 0.00 2.66
429 430 5.657302 ACCTCTCCGATATTCTGTTGTAAGT 59.343 40.000 0.00 0.00 0.00 2.24
430 431 6.150396 ACCTCTCCGATATTCTGTTGTAAG 57.850 41.667 0.00 0.00 0.00 2.34
445 446 0.100682 CGTGGACATGTACCTCTCCG 59.899 60.000 5.38 0.00 0.00 4.63
485 488 1.067565 TCTAGAGCAAGCGTCCAACTG 60.068 52.381 0.00 0.00 0.00 3.16
486 489 1.067495 GTCTAGAGCAAGCGTCCAACT 60.067 52.381 0.00 0.00 0.00 3.16
523 526 0.716108 GTGTGATCGAAAGCACGAGG 59.284 55.000 10.51 0.00 45.22 4.63
527 530 1.389106 GTACCGTGTGATCGAAAGCAC 59.611 52.381 8.86 8.86 35.63 4.40
528 531 1.670674 GGTACCGTGTGATCGAAAGCA 60.671 52.381 0.00 0.00 0.00 3.91
529 532 0.997196 GGTACCGTGTGATCGAAAGC 59.003 55.000 0.00 0.00 0.00 3.51
530 533 2.163815 AGAGGTACCGTGTGATCGAAAG 59.836 50.000 6.18 0.00 0.00 2.62
531 534 2.094906 CAGAGGTACCGTGTGATCGAAA 60.095 50.000 6.18 0.00 0.00 3.46
532 535 1.471287 CAGAGGTACCGTGTGATCGAA 59.529 52.381 6.18 0.00 0.00 3.71
533 536 1.092348 CAGAGGTACCGTGTGATCGA 58.908 55.000 6.18 0.00 0.00 3.59
534 537 0.525668 GCAGAGGTACCGTGTGATCG 60.526 60.000 16.14 2.85 0.00 3.69
535 538 0.530744 TGCAGAGGTACCGTGTGATC 59.469 55.000 16.14 4.16 0.00 2.92
536 539 1.137086 GATGCAGAGGTACCGTGTGAT 59.863 52.381 16.14 10.04 0.00 3.06
537 540 0.530744 GATGCAGAGGTACCGTGTGA 59.469 55.000 16.14 6.45 0.00 3.58
538 541 0.802222 CGATGCAGAGGTACCGTGTG 60.802 60.000 16.14 11.63 0.00 3.82
539 542 1.248785 ACGATGCAGAGGTACCGTGT 61.249 55.000 16.14 0.00 0.00 4.49
540 543 0.108804 AACGATGCAGAGGTACCGTG 60.109 55.000 6.18 9.57 0.00 4.94
541 544 0.172803 GAACGATGCAGAGGTACCGT 59.827 55.000 6.18 0.00 0.00 4.83
542 545 0.172578 TGAACGATGCAGAGGTACCG 59.827 55.000 6.18 0.00 0.00 4.02
543 546 1.641577 GTGAACGATGCAGAGGTACC 58.358 55.000 2.73 2.73 0.00 3.34
544 547 1.067142 TGGTGAACGATGCAGAGGTAC 60.067 52.381 0.00 0.00 0.00 3.34
545 548 1.204704 CTGGTGAACGATGCAGAGGTA 59.795 52.381 0.00 0.00 0.00 3.08
546 549 0.036952 CTGGTGAACGATGCAGAGGT 60.037 55.000 0.00 0.00 0.00 3.85
586 603 1.959282 AGCTGCAAGAAGGAACCAAAG 59.041 47.619 1.02 0.00 34.07 2.77
591 608 1.208614 CGCAGCTGCAAGAAGGAAC 59.791 57.895 36.03 5.05 42.21 3.62
647 8246 2.029844 GGAGTTGAGCTGGTCACGC 61.030 63.158 9.38 5.83 33.71 5.34
682 8281 7.128234 ACCATTGAAATGCCTTATGCTAAAT 57.872 32.000 0.00 0.00 42.00 1.40
685 8284 5.199723 TGACCATTGAAATGCCTTATGCTA 58.800 37.500 0.00 0.00 42.00 3.49
719 8318 4.935808 CCTTTGGAGTTAGCTCATTACGTT 59.064 41.667 8.96 0.00 43.37 3.99
783 8391 2.495669 CTCCTCTGTGGACTTCCTCTTC 59.504 54.545 0.00 0.00 40.56 2.87
788 8396 0.534873 GCTCTCCTCTGTGGACTTCC 59.465 60.000 0.00 0.00 40.56 3.46
833 9513 0.171455 CCTCTTCGAAGCTGCTACGT 59.829 55.000 20.56 0.00 0.00 3.57
941 20312 1.343142 GTGGGGTTTTAGTTTGCTGGG 59.657 52.381 0.00 0.00 0.00 4.45
953 20324 0.031616 TTGCTTGGGAAGTGGGGTTT 60.032 50.000 0.00 0.00 0.00 3.27
956 20327 0.758685 TGTTTGCTTGGGAAGTGGGG 60.759 55.000 0.00 0.00 0.00 4.96
966 20337 6.145535 GTCTTGTCTAGGAATTGTTTGCTTG 58.854 40.000 0.00 0.00 34.97 4.01
981 20352 4.318332 CCATTTGAGCAGTGTCTTGTCTA 58.682 43.478 0.00 0.00 0.00 2.59
984 20355 1.610522 GCCATTTGAGCAGTGTCTTGT 59.389 47.619 0.00 0.00 0.00 3.16
985 20384 1.610038 TGCCATTTGAGCAGTGTCTTG 59.390 47.619 0.00 0.00 34.69 3.02
990 20389 0.458669 GGGATGCCATTTGAGCAGTG 59.541 55.000 0.00 0.00 44.90 3.66
991 20390 0.040058 TGGGATGCCATTTGAGCAGT 59.960 50.000 0.00 0.00 44.90 4.40
992 20391 0.744874 CTGGGATGCCATTTGAGCAG 59.255 55.000 6.34 0.00 44.90 4.24
1005 20404 2.430610 GCTCTCGACCAGCTGGGAT 61.431 63.158 35.42 17.17 41.15 3.85
1035 20434 3.636231 CCCTTGTGGACCTCGGCA 61.636 66.667 0.00 0.00 35.39 5.69
1107 20506 4.230502 TCATCCATAGGAAAGAGGCCTTTT 59.769 41.667 6.77 4.05 42.30 2.27
1160 20559 1.409427 GGACTATCCAGACGAACCCAG 59.591 57.143 0.00 0.00 36.28 4.45
1177 20576 5.817816 TGTGTTCTTTCTTCTTCTTCTGGAC 59.182 40.000 0.00 0.00 0.00 4.02
1179 20578 5.586243 TGTGTGTTCTTTCTTCTTCTTCTGG 59.414 40.000 0.00 0.00 0.00 3.86
1197 20596 3.074412 GTTGATCTTCCGGAATGTGTGT 58.926 45.455 19.21 0.00 0.00 3.72
1203 20602 2.092914 GGTCTGGTTGATCTTCCGGAAT 60.093 50.000 19.21 3.02 40.27 3.01
1207 20606 0.246635 ACGGTCTGGTTGATCTTCCG 59.753 55.000 0.00 0.00 41.77 4.30
1208 20607 1.550976 AGACGGTCTGGTTGATCTTCC 59.449 52.381 10.41 0.00 0.00 3.46
1272 20671 2.928396 ACCCCGGTGACCTCCTTG 60.928 66.667 0.00 0.00 0.00 3.61
1276 20675 1.265454 ATCTTGACCCCGGTGACCTC 61.265 60.000 0.00 0.00 0.00 3.85
1301 20700 0.456995 GACCTCGACCAAAGAGAGCG 60.457 60.000 0.00 0.00 37.93 5.03
1322 20724 2.233186 TCAGCAGAAGACTCATCCACAG 59.767 50.000 0.00 0.00 0.00 3.66
1397 20799 1.209275 CTATTCCCAGAGCGCGAACG 61.209 60.000 12.10 0.00 44.07 3.95
1408 20810 2.890814 GCTAGTAGCTCCCTATTCCCA 58.109 52.381 15.16 0.00 38.45 4.37
1436 20838 6.656693 CCATTCACTGACTTTATTCTTCTGGT 59.343 38.462 0.00 0.00 0.00 4.00
1472 20874 4.602340 ACTTCTCCATAACACGTGAACT 57.398 40.909 25.01 8.66 0.00 3.01
1473 20875 7.705325 ACATATACTTCTCCATAACACGTGAAC 59.295 37.037 25.01 0.00 0.00 3.18
1474 20876 7.778083 ACATATACTTCTCCATAACACGTGAA 58.222 34.615 25.01 10.36 0.00 3.18
1476 20878 8.420374 AAACATATACTTCTCCATAACACGTG 57.580 34.615 15.48 15.48 0.00 4.49
1477 20879 7.709613 GGAAACATATACTTCTCCATAACACGT 59.290 37.037 0.00 0.00 0.00 4.49
1478 20880 7.096189 CGGAAACATATACTTCTCCATAACACG 60.096 40.741 0.00 0.00 0.00 4.49
1479 20881 7.709613 ACGGAAACATATACTTCTCCATAACAC 59.290 37.037 0.00 0.00 0.00 3.32
1480 20882 7.788026 ACGGAAACATATACTTCTCCATAACA 58.212 34.615 0.00 0.00 0.00 2.41
1481 20883 8.548721 CAACGGAAACATATACTTCTCCATAAC 58.451 37.037 0.00 0.00 0.00 1.89
1482 20884 8.262227 ACAACGGAAACATATACTTCTCCATAA 58.738 33.333 0.00 0.00 0.00 1.90
1484 20886 6.650120 ACAACGGAAACATATACTTCTCCAT 58.350 36.000 0.00 0.00 0.00 3.41
1485 20887 6.045072 ACAACGGAAACATATACTTCTCCA 57.955 37.500 0.00 0.00 0.00 3.86
1486 20888 6.338937 AGACAACGGAAACATATACTTCTCC 58.661 40.000 0.00 0.00 0.00 3.71
1507 20910 8.678199 AGCAGCCTTTTATTAGATTACAAAGAC 58.322 33.333 0.00 0.00 0.00 3.01
1529 21011 3.693085 AGGAAGCAACATTCATGTAGCAG 59.307 43.478 0.00 0.00 40.80 4.24
1532 21014 6.258230 TGAAAGGAAGCAACATTCATGTAG 57.742 37.500 0.00 0.00 40.80 2.74
1534 21016 4.560108 GCTGAAAGGAAGCAACATTCATGT 60.560 41.667 0.00 0.00 44.20 3.21
1566 21048 7.771183 AGTGTTATTCATTACATTTGGCGAAT 58.229 30.769 0.00 0.00 0.00 3.34
1596 38021 2.557056 CGAAGTGGGATATAGAAGGCGA 59.443 50.000 0.00 0.00 0.00 5.54
1602 38027 4.141228 AGAGTGGTCGAAGTGGGATATAGA 60.141 45.833 0.00 0.00 0.00 1.98
1614 38039 1.343465 GGGAAGTTGAGAGTGGTCGAA 59.657 52.381 0.00 0.00 0.00 3.71
1820 38248 3.487544 GCTGTCGCTCTCTTTGTTTGTTT 60.488 43.478 0.00 0.00 0.00 2.83
1821 38249 2.032178 GCTGTCGCTCTCTTTGTTTGTT 59.968 45.455 0.00 0.00 0.00 2.83
1822 38250 1.599542 GCTGTCGCTCTCTTTGTTTGT 59.400 47.619 0.00 0.00 0.00 2.83
1823 38251 1.397693 CGCTGTCGCTCTCTTTGTTTG 60.398 52.381 0.00 0.00 0.00 2.93
1878 38311 8.285776 AGCGAGAACAATAAAATCAACAAAAG 57.714 30.769 0.00 0.00 0.00 2.27
1893 38326 7.042725 CCGATTATCTGATTTTAGCGAGAACAA 60.043 37.037 0.00 0.00 0.00 2.83
1895 38328 6.641314 TCCGATTATCTGATTTTAGCGAGAAC 59.359 38.462 0.00 0.00 0.00 3.01
1906 38339 9.664332 CTGGAAATAATCTCCGATTATCTGATT 57.336 33.333 8.95 8.86 35.55 2.57
1932 38365 7.539712 TTTCACATCGATCTGAACCTTAATC 57.460 36.000 14.69 0.00 0.00 1.75
1936 38369 5.530915 TGTTTTTCACATCGATCTGAACCTT 59.469 36.000 14.69 0.00 0.00 3.50
1966 38400 8.817100 GCATAAAAATATGTGCCTAAGAAAACC 58.183 33.333 0.00 0.00 0.00 3.27
1967 38401 8.531530 CGCATAAAAATATGTGCCTAAGAAAAC 58.468 33.333 0.00 0.00 34.20 2.43
2021 38463 9.899226 ATTTTCTCAGCAATCTTTTAGTACAAC 57.101 29.630 0.00 0.00 0.00 3.32
2026 38468 6.072508 TCGCATTTTCTCAGCAATCTTTTAGT 60.073 34.615 0.00 0.00 0.00 2.24
2027 38469 6.317088 TCGCATTTTCTCAGCAATCTTTTAG 58.683 36.000 0.00 0.00 0.00 1.85
2050 38492 4.642445 TTGTCCCGTTTTTCTTTCCTTC 57.358 40.909 0.00 0.00 0.00 3.46
2058 38501 3.430333 TCTGCTTTTGTCCCGTTTTTC 57.570 42.857 0.00 0.00 0.00 2.29
2061 38505 2.758423 AGTTTCTGCTTTTGTCCCGTTT 59.242 40.909 0.00 0.00 0.00 3.60
2063 38507 2.052782 AGTTTCTGCTTTTGTCCCGT 57.947 45.000 0.00 0.00 0.00 5.28
2064 38508 3.399330 TCTAGTTTCTGCTTTTGTCCCG 58.601 45.455 0.00 0.00 0.00 5.14
2065 38509 3.189495 GCTCTAGTTTCTGCTTTTGTCCC 59.811 47.826 0.00 0.00 0.00 4.46
2082 38526 2.903784 TGGCTAGTTGAGGTTTGCTCTA 59.096 45.455 0.00 0.00 0.00 2.43
2090 38534 4.349930 TCTTAGGTTTTGGCTAGTTGAGGT 59.650 41.667 0.00 0.00 0.00 3.85
2093 38537 5.937111 AGTTCTTAGGTTTTGGCTAGTTGA 58.063 37.500 0.00 0.00 0.00 3.18
2094 38538 6.148976 GGTAGTTCTTAGGTTTTGGCTAGTTG 59.851 42.308 0.00 0.00 0.00 3.16
2107 38551 6.151144 CCCATTCACTTTTGGTAGTTCTTAGG 59.849 42.308 0.00 0.00 0.00 2.69
2108 38552 6.940298 TCCCATTCACTTTTGGTAGTTCTTAG 59.060 38.462 0.00 0.00 0.00 2.18
2118 38562 4.414337 TGGTTTTCCCATTCACTTTTGG 57.586 40.909 0.00 0.00 38.72 3.28
2119 38563 5.064579 GTGTTGGTTTTCCCATTCACTTTTG 59.935 40.000 0.00 0.00 44.74 2.44
2125 38569 3.636300 CTCTGTGTTGGTTTTCCCATTCA 59.364 43.478 0.00 0.00 44.74 2.57
2132 38576 5.324784 AGTTTTCCTCTGTGTTGGTTTTC 57.675 39.130 0.00 0.00 0.00 2.29
2148 38600 3.010420 GACCATGGCAGTAGGAGTTTTC 58.990 50.000 13.04 0.00 0.00 2.29
2163 38615 1.337071 GATCATGCAGCCTTGACCATG 59.663 52.381 0.00 0.00 0.00 3.66
2170 38622 3.510531 ATCTGATGATCATGCAGCCTT 57.489 42.857 14.30 6.21 0.00 4.35
2174 38636 7.039993 TGGGAAAATAATCTGATGATCATGCAG 60.040 37.037 14.30 18.32 31.51 4.41
2176 38638 7.223260 TGGGAAAATAATCTGATGATCATGC 57.777 36.000 14.30 5.60 31.51 4.06
2177 38639 9.856488 GAATGGGAAAATAATCTGATGATCATG 57.144 33.333 14.30 0.00 31.51 3.07
2178 38640 9.824216 AGAATGGGAAAATAATCTGATGATCAT 57.176 29.630 8.25 8.25 31.51 2.45
2185 38647 9.973661 TGAACTTAGAATGGGAAAATAATCTGA 57.026 29.630 0.00 0.00 0.00 3.27
2232 38853 6.838612 TGATGGAATATTAAAAGTTCCTGGGG 59.161 38.462 14.30 0.00 41.52 4.96
2280 38902 2.570415 TCCCGTTTTATGTTGGCTGA 57.430 45.000 0.00 0.00 0.00 4.26
2284 38906 4.517453 TGAGTTCTTCCCGTTTTATGTTGG 59.483 41.667 0.00 0.00 0.00 3.77
2298 38920 3.502979 ACTGAGTAGACGGTGAGTTCTTC 59.497 47.826 0.00 0.00 0.00 2.87
2310 38943 5.407407 TTCCCATTCTCAACTGAGTAGAC 57.593 43.478 6.61 0.00 42.60 2.59
2327 38960 3.906720 ACTAATTTCTAGCGCTTCCCA 57.093 42.857 18.68 0.00 0.00 4.37
2334 38967 6.535508 AGCCTCAAACTAACTAATTTCTAGCG 59.464 38.462 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.