Multiple sequence alignment - TraesCS5D01G274700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G274700 chr5D 100.000 2342 0 0 1 2342 377532020 377529679 0.000000e+00 4325.0
1 TraesCS5D01G274700 chr5D 100.000 80 0 0 318 397 80057445 80057524 5.210000e-32 148.0
2 TraesCS5D01G274700 chr5D 98.810 84 0 1 315 397 357570095 357570012 5.210000e-32 148.0
3 TraesCS5D01G274700 chr5D 93.846 65 4 0 2277 2341 421534433 421534497 5.330000e-17 99.0
4 TraesCS5D01G274700 chr5B 92.870 1136 43 24 398 1517 450839376 450838263 0.000000e+00 1615.0
5 TraesCS5D01G274700 chr5B 89.732 448 34 8 1717 2160 450837781 450837342 1.570000e-156 562.0
6 TraesCS5D01G274700 chr5B 92.386 197 14 1 1532 1727 450838085 450837889 1.770000e-71 279.0
7 TraesCS5D01G274700 chr5B 91.061 179 11 1 58 231 450839614 450839436 1.080000e-58 237.0
8 TraesCS5D01G274700 chr5B 96.970 66 2 0 255 320 450839449 450839384 6.840000e-21 111.0
9 TraesCS5D01G274700 chr5B 100.000 38 0 0 25 62 450839829 450839792 1.160000e-08 71.3
10 TraesCS5D01G274700 chr5A 92.161 995 46 12 398 1386 478319603 478318635 0.000000e+00 1376.0
11 TraesCS5D01G274700 chr5A 90.506 474 25 10 1690 2160 478314691 478314235 1.990000e-170 608.0
12 TraesCS5D01G274700 chr5A 91.045 201 15 1 25 222 478319869 478319669 3.840000e-68 268.0
13 TraesCS5D01G274700 chr5A 89.637 193 13 4 1407 1594 478317395 478317205 3.010000e-59 239.0
14 TraesCS5D01G274700 chr5A 94.167 120 7 0 2161 2280 478314153 478314034 1.430000e-42 183.0
15 TraesCS5D01G274700 chr5A 98.387 62 1 0 259 320 478319672 478319611 2.460000e-20 110.0
16 TraesCS5D01G274700 chr5A 96.429 56 2 0 1590 1645 478315505 478315450 2.480000e-15 93.5
17 TraesCS5D01G274700 chrUn 100.000 80 0 0 318 397 189385487 189385566 5.210000e-32 148.0
18 TraesCS5D01G274700 chrUn 100.000 80 0 0 318 397 325547460 325547381 5.210000e-32 148.0
19 TraesCS5D01G274700 chrUn 100.000 80 0 0 318 397 325550556 325550477 5.210000e-32 148.0
20 TraesCS5D01G274700 chrUn 100.000 80 0 0 318 397 329019944 329020023 5.210000e-32 148.0
21 TraesCS5D01G274700 chrUn 100.000 80 0 0 318 397 332081440 332081519 5.210000e-32 148.0
22 TraesCS5D01G274700 chrUn 100.000 80 0 0 318 397 332084260 332084339 5.210000e-32 148.0
23 TraesCS5D01G274700 chrUn 100.000 80 0 0 318 397 359271045 359271124 5.210000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G274700 chr5D 377529679 377532020 2341 True 4325.000000 4325 100.000000 1 2342 1 chr5D.!!$R2 2341
1 TraesCS5D01G274700 chr5B 450837342 450839829 2487 True 479.216667 1615 93.836500 25 2160 6 chr5B.!!$R1 2135
2 TraesCS5D01G274700 chr5A 478314034 478319869 5835 True 411.071429 1376 93.190286 25 2280 7 chr5A.!!$R1 2255

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
927 1134 0.038021 CCACCACCACACATCATCCA 59.962 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 6204 0.392706 TGTGTGCCGATGACACTTCT 59.607 50.0 11.29 0.0 43.5 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 283 3.876914 TGTCAGTTGTCATTGTCTTGTCC 59.123 43.478 0.00 0.00 0.00 4.02
216 404 0.620556 TCTCCAATGTCTCCCCTTGC 59.379 55.000 0.00 0.00 0.00 4.01
218 406 1.005215 CTCCAATGTCTCCCCTTGCTT 59.995 52.381 0.00 0.00 0.00 3.91
219 407 1.428912 TCCAATGTCTCCCCTTGCTTT 59.571 47.619 0.00 0.00 0.00 3.51
220 408 1.821136 CCAATGTCTCCCCTTGCTTTC 59.179 52.381 0.00 0.00 0.00 2.62
221 409 2.556114 CCAATGTCTCCCCTTGCTTTCT 60.556 50.000 0.00 0.00 0.00 2.52
222 410 3.160269 CAATGTCTCCCCTTGCTTTCTT 58.840 45.455 0.00 0.00 0.00 2.52
223 411 2.568623 TGTCTCCCCTTGCTTTCTTC 57.431 50.000 0.00 0.00 0.00 2.87
224 412 2.057922 TGTCTCCCCTTGCTTTCTTCT 58.942 47.619 0.00 0.00 0.00 2.85
225 413 3.248024 TGTCTCCCCTTGCTTTCTTCTA 58.752 45.455 0.00 0.00 0.00 2.10
226 414 3.261897 TGTCTCCCCTTGCTTTCTTCTAG 59.738 47.826 0.00 0.00 0.00 2.43
227 415 2.840651 TCTCCCCTTGCTTTCTTCTAGG 59.159 50.000 0.00 0.00 0.00 3.02
228 416 1.282157 TCCCCTTGCTTTCTTCTAGGC 59.718 52.381 0.00 0.00 0.00 3.93
229 417 1.683319 CCCCTTGCTTTCTTCTAGGCC 60.683 57.143 0.00 0.00 0.00 5.19
230 418 1.004745 CCCTTGCTTTCTTCTAGGCCA 59.995 52.381 5.01 0.00 0.00 5.36
231 419 2.357569 CCCTTGCTTTCTTCTAGGCCAT 60.358 50.000 5.01 0.00 0.00 4.40
232 420 2.948315 CCTTGCTTTCTTCTAGGCCATC 59.052 50.000 5.01 0.00 0.00 3.51
233 421 2.717639 TGCTTTCTTCTAGGCCATCC 57.282 50.000 5.01 0.00 0.00 3.51
234 422 1.212935 TGCTTTCTTCTAGGCCATCCC 59.787 52.381 5.01 0.00 0.00 3.85
236 424 2.486370 GCTTTCTTCTAGGCCATCCCTC 60.486 54.545 5.01 0.00 44.96 4.30
237 425 2.568546 TTCTTCTAGGCCATCCCTCA 57.431 50.000 5.01 0.00 44.96 3.86
238 426 2.568546 TCTTCTAGGCCATCCCTCAA 57.431 50.000 5.01 0.00 44.96 3.02
239 427 2.845659 TCTTCTAGGCCATCCCTCAAA 58.154 47.619 5.01 0.00 44.96 2.69
240 428 3.189606 TCTTCTAGGCCATCCCTCAAAA 58.810 45.455 5.01 0.00 44.96 2.44
241 429 3.591527 TCTTCTAGGCCATCCCTCAAAAA 59.408 43.478 5.01 0.00 44.96 1.94
320 508 2.945668 AGCTAATTGGGCGCTAAGAAAG 59.054 45.455 7.64 0.00 31.12 2.62
321 509 2.033424 GCTAATTGGGCGCTAAGAAAGG 59.967 50.000 7.64 0.00 0.00 3.11
322 510 2.507407 AATTGGGCGCTAAGAAAGGA 57.493 45.000 7.64 0.00 0.00 3.36
323 511 2.507407 ATTGGGCGCTAAGAAAGGAA 57.493 45.000 7.64 0.00 0.00 3.36
324 512 2.279935 TTGGGCGCTAAGAAAGGAAA 57.720 45.000 7.64 0.00 0.00 3.13
325 513 2.507407 TGGGCGCTAAGAAAGGAAAT 57.493 45.000 7.64 0.00 0.00 2.17
327 515 2.290641 TGGGCGCTAAGAAAGGAAATGA 60.291 45.455 7.64 0.00 0.00 2.57
328 516 2.752903 GGGCGCTAAGAAAGGAAATGAA 59.247 45.455 7.64 0.00 0.00 2.57
329 517 3.381590 GGGCGCTAAGAAAGGAAATGAAT 59.618 43.478 7.64 0.00 0.00 2.57
330 518 4.354587 GGCGCTAAGAAAGGAAATGAATG 58.645 43.478 7.64 0.00 0.00 2.67
331 519 4.142381 GGCGCTAAGAAAGGAAATGAATGT 60.142 41.667 7.64 0.00 0.00 2.71
332 520 5.065988 GGCGCTAAGAAAGGAAATGAATGTA 59.934 40.000 7.64 0.00 0.00 2.29
333 521 6.238759 GGCGCTAAGAAAGGAAATGAATGTAT 60.239 38.462 7.64 0.00 0.00 2.29
334 522 6.853362 GCGCTAAGAAAGGAAATGAATGTATC 59.147 38.462 0.00 0.00 0.00 2.24
335 523 7.254932 GCGCTAAGAAAGGAAATGAATGTATCT 60.255 37.037 0.00 0.00 0.00 1.98
336 524 9.261180 CGCTAAGAAAGGAAATGAATGTATCTA 57.739 33.333 0.00 0.00 0.00 1.98
340 528 9.620259 AAGAAAGGAAATGAATGTATCTACTCC 57.380 33.333 0.00 0.00 0.00 3.85
341 529 8.997734 AGAAAGGAAATGAATGTATCTACTCCT 58.002 33.333 0.00 0.00 33.77 3.69
342 530 9.620259 GAAAGGAAATGAATGTATCTACTCCTT 57.380 33.333 0.00 0.00 39.45 3.36
343 531 9.620259 AAAGGAAATGAATGTATCTACTCCTTC 57.380 33.333 0.00 0.83 38.12 3.46
344 532 8.324191 AGGAAATGAATGTATCTACTCCTTCA 57.676 34.615 0.00 0.00 30.42 3.02
345 533 8.772250 AGGAAATGAATGTATCTACTCCTTCAA 58.228 33.333 0.00 0.00 30.42 2.69
346 534 9.396022 GGAAATGAATGTATCTACTCCTTCAAA 57.604 33.333 0.00 0.00 0.00 2.69
348 536 9.739276 AAATGAATGTATCTACTCCTTCAAACA 57.261 29.630 0.00 0.00 0.00 2.83
349 537 9.739276 AATGAATGTATCTACTCCTTCAAACAA 57.261 29.630 0.00 0.00 0.00 2.83
350 538 8.547967 TGAATGTATCTACTCCTTCAAACAAC 57.452 34.615 0.00 0.00 0.00 3.32
351 539 8.154203 TGAATGTATCTACTCCTTCAAACAACA 58.846 33.333 0.00 0.00 0.00 3.33
352 540 8.553459 AATGTATCTACTCCTTCAAACAACAG 57.447 34.615 0.00 0.00 0.00 3.16
353 541 6.464222 TGTATCTACTCCTTCAAACAACAGG 58.536 40.000 0.00 0.00 0.00 4.00
354 542 5.825593 ATCTACTCCTTCAAACAACAGGA 57.174 39.130 0.00 0.00 35.32 3.86
355 543 5.623956 TCTACTCCTTCAAACAACAGGAA 57.376 39.130 0.00 0.00 36.23 3.36
356 544 5.996644 TCTACTCCTTCAAACAACAGGAAA 58.003 37.500 0.00 0.00 36.23 3.13
357 545 6.055588 TCTACTCCTTCAAACAACAGGAAAG 58.944 40.000 0.00 0.00 36.23 2.62
358 546 3.381590 ACTCCTTCAAACAACAGGAAAGC 59.618 43.478 0.00 0.00 36.23 3.51
359 547 3.360867 TCCTTCAAACAACAGGAAAGCA 58.639 40.909 0.00 0.00 33.53 3.91
360 548 3.381272 TCCTTCAAACAACAGGAAAGCAG 59.619 43.478 0.00 0.00 33.53 4.24
361 549 3.381272 CCTTCAAACAACAGGAAAGCAGA 59.619 43.478 0.00 0.00 0.00 4.26
362 550 4.354587 CTTCAAACAACAGGAAAGCAGAC 58.645 43.478 0.00 0.00 0.00 3.51
363 551 3.351740 TCAAACAACAGGAAAGCAGACA 58.648 40.909 0.00 0.00 0.00 3.41
364 552 3.128589 TCAAACAACAGGAAAGCAGACAC 59.871 43.478 0.00 0.00 0.00 3.67
365 553 1.299541 ACAACAGGAAAGCAGACACG 58.700 50.000 0.00 0.00 0.00 4.49
366 554 0.040958 CAACAGGAAAGCAGACACGC 60.041 55.000 0.00 0.00 0.00 5.34
367 555 0.463654 AACAGGAAAGCAGACACGCA 60.464 50.000 0.00 0.00 0.00 5.24
368 556 0.250467 ACAGGAAAGCAGACACGCAT 60.250 50.000 0.00 0.00 0.00 4.73
369 557 0.445436 CAGGAAAGCAGACACGCATC 59.555 55.000 0.00 0.00 0.00 3.91
370 558 0.674895 AGGAAAGCAGACACGCATCC 60.675 55.000 0.00 0.00 39.29 3.51
371 559 0.674895 GGAAAGCAGACACGCATCCT 60.675 55.000 0.00 0.00 37.25 3.24
372 560 1.405526 GGAAAGCAGACACGCATCCTA 60.406 52.381 0.00 0.00 37.25 2.94
373 561 1.661112 GAAAGCAGACACGCATCCTAC 59.339 52.381 0.00 0.00 0.00 3.18
374 562 0.108138 AAGCAGACACGCATCCTACC 60.108 55.000 0.00 0.00 0.00 3.18
375 563 1.521681 GCAGACACGCATCCTACCC 60.522 63.158 0.00 0.00 0.00 3.69
376 564 1.226974 CAGACACGCATCCTACCCG 60.227 63.158 0.00 0.00 0.00 5.28
377 565 2.585247 GACACGCATCCTACCCGC 60.585 66.667 0.00 0.00 0.00 6.13
378 566 3.365291 GACACGCATCCTACCCGCA 62.365 63.158 0.00 0.00 0.00 5.69
379 567 2.108976 CACGCATCCTACCCGCAT 59.891 61.111 0.00 0.00 0.00 4.73
380 568 1.956170 CACGCATCCTACCCGCATC 60.956 63.158 0.00 0.00 0.00 3.91
381 569 2.421314 CGCATCCTACCCGCATCA 59.579 61.111 0.00 0.00 0.00 3.07
382 570 1.227527 CGCATCCTACCCGCATCAA 60.228 57.895 0.00 0.00 0.00 2.57
383 571 0.603707 CGCATCCTACCCGCATCAAT 60.604 55.000 0.00 0.00 0.00 2.57
384 572 0.877071 GCATCCTACCCGCATCAATG 59.123 55.000 0.00 0.00 0.00 2.82
395 583 2.716814 CATCAATGCCTCTGCCCTC 58.283 57.895 0.00 0.00 36.33 4.30
396 584 0.183014 CATCAATGCCTCTGCCCTCT 59.817 55.000 0.00 0.00 36.33 3.69
430 618 2.548920 CCTCTCGATATTCCTGCCAACC 60.549 54.545 0.00 0.00 0.00 3.77
432 620 2.365617 TCTCGATATTCCTGCCAACCTC 59.634 50.000 0.00 0.00 0.00 3.85
437 625 5.419155 TCGATATTCCTGCCAACCTCTATAG 59.581 44.000 0.00 0.00 0.00 1.31
445 633 5.719085 CCTGCCAACCTCTATAGTATCTCAT 59.281 44.000 0.00 0.00 0.00 2.90
448 636 7.013220 TGCCAACCTCTATAGTATCTCATCTT 58.987 38.462 0.00 0.00 0.00 2.40
506 694 3.186409 CGAAAACTGGCAAATCTTCTCGA 59.814 43.478 0.00 0.00 0.00 4.04
607 800 4.579869 CCTGTGTACCAGAGCACTTTATT 58.420 43.478 11.58 0.00 44.49 1.40
608 801 5.730550 CCTGTGTACCAGAGCACTTTATTA 58.269 41.667 11.58 0.00 44.49 0.98
609 802 6.349300 CCTGTGTACCAGAGCACTTTATTAT 58.651 40.000 11.58 0.00 44.49 1.28
650 848 4.337985 CGTACACACGTCTTGAGATAGT 57.662 45.455 0.65 0.00 43.31 2.12
716 915 2.833121 CCATTAACGGCTGGCCCC 60.833 66.667 0.00 0.00 0.00 5.80
926 1133 1.315257 GCCACCACCACACATCATCC 61.315 60.000 0.00 0.00 0.00 3.51
927 1134 0.038021 CCACCACCACACATCATCCA 59.962 55.000 0.00 0.00 0.00 3.41
928 1135 1.341285 CCACCACCACACATCATCCAT 60.341 52.381 0.00 0.00 0.00 3.41
929 1136 2.019249 CACCACCACACATCATCCATC 58.981 52.381 0.00 0.00 0.00 3.51
934 1141 2.148768 CCACACATCATCCATCATCCG 58.851 52.381 0.00 0.00 0.00 4.18
944 1151 1.953138 CATCATCCGTCGCTCCTGC 60.953 63.158 0.00 0.00 0.00 4.85
979 1188 2.184579 GCGGAGAGGAAGGGTTCG 59.815 66.667 0.00 0.00 0.00 3.95
991 1200 2.737376 GGTTCGTGTCCTGTCGGC 60.737 66.667 0.00 0.00 0.00 5.54
1030 1239 2.104859 TCGTACGAGAGGCTGTCCG 61.105 63.158 15.28 4.35 37.47 4.79
1248 1457 2.728383 CGCAACTTCGACGACGGT 60.728 61.111 7.55 0.00 40.21 4.83
1251 1460 0.938168 GCAACTTCGACGACGGTCTT 60.938 55.000 7.55 0.00 41.16 3.01
1354 1563 4.142600 CCGTCCAGTGATTCATTCTTTTCC 60.143 45.833 0.00 0.00 0.00 3.13
1437 2868 8.699749 GTTTGATTAATTGTAGGACAGTTTTGC 58.300 33.333 0.00 0.00 30.51 3.68
1444 2877 3.813166 TGTAGGACAGTTTTGCTTGTAGC 59.187 43.478 0.00 0.00 42.82 3.58
1495 2928 0.940126 CTCGATGTACATGGCCAAGC 59.060 55.000 14.43 0.22 0.00 4.01
1501 2934 4.142491 CGATGTACATGGCCAAGCTTTTTA 60.142 41.667 14.43 0.00 0.00 1.52
1502 2935 4.782019 TGTACATGGCCAAGCTTTTTAG 57.218 40.909 10.96 0.00 0.00 1.85
1503 2936 4.148838 TGTACATGGCCAAGCTTTTTAGT 58.851 39.130 10.96 0.00 0.00 2.24
1519 2952 6.581166 GCTTTTTAGTAGTTCGTTTGGAATGG 59.419 38.462 0.00 0.00 36.92 3.16
1523 2956 4.906618 AGTAGTTCGTTTGGAATGGTGAT 58.093 39.130 0.00 0.00 36.92 3.06
1539 3136 8.636213 GGAATGGTGATGATACATGAAGAAAAT 58.364 33.333 0.00 0.00 0.00 1.82
1584 3181 4.894705 TGGCACAAATTATGATATGGCACT 59.105 37.500 0.00 0.00 37.66 4.40
1688 5019 9.238368 TCCTTACAAAATGGACTTATTAACAGG 57.762 33.333 0.00 0.00 0.00 4.00
1727 5742 4.103469 TGTGGTTACTTCCAAAAGGAGCTA 59.897 41.667 0.00 0.00 39.34 3.32
1728 5743 4.695928 GTGGTTACTTCCAAAAGGAGCTAG 59.304 45.833 0.00 0.00 39.34 3.42
1839 5970 0.037326 CATGTACCACACGAGCACCT 60.037 55.000 0.00 0.00 0.00 4.00
1976 6110 7.972623 ACTAACTTCGATATTCTTTCAGACG 57.027 36.000 0.00 0.00 0.00 4.18
1977 6111 5.704217 AACTTCGATATTCTTTCAGACGC 57.296 39.130 0.00 0.00 0.00 5.19
1981 6115 6.369065 ACTTCGATATTCTTTCAGACGCTTTT 59.631 34.615 0.00 0.00 0.00 2.27
1982 6116 6.094739 TCGATATTCTTTCAGACGCTTTTG 57.905 37.500 0.00 0.00 0.00 2.44
1983 6117 5.867174 TCGATATTCTTTCAGACGCTTTTGA 59.133 36.000 0.00 0.00 0.00 2.69
1984 6118 5.954349 CGATATTCTTTCAGACGCTTTTGAC 59.046 40.000 0.00 0.00 0.00 3.18
1985 6119 3.963383 TTCTTTCAGACGCTTTTGACC 57.037 42.857 0.00 0.00 0.00 4.02
1987 6121 2.872245 TCTTTCAGACGCTTTTGACCAG 59.128 45.455 0.00 0.00 0.00 4.00
1990 6124 2.912771 TCAGACGCTTTTGACCAGAAA 58.087 42.857 0.00 0.00 0.00 2.52
1992 6126 3.882888 TCAGACGCTTTTGACCAGAAAAT 59.117 39.130 0.00 0.00 0.00 1.82
2070 6204 7.910683 GGAATTTCGGTGCATTTTTAACAAAAA 59.089 29.630 0.00 0.00 43.76 1.94
2071 6205 8.833976 AATTTCGGTGCATTTTTAACAAAAAG 57.166 26.923 0.00 0.00 42.97 2.27
2102 6236 1.347817 GCACACACTAGTCGAGCTGC 61.348 60.000 0.00 0.00 0.00 5.25
2134 6269 0.541392 TTGTGAGTGAGGGCGCATAT 59.459 50.000 10.83 0.00 0.00 1.78
2138 6273 0.179045 GAGTGAGGGCGCATATGGTT 60.179 55.000 10.83 0.00 0.00 3.67
2146 6281 3.123050 GGGCGCATATGGTTTTGATTTC 58.877 45.455 10.83 0.00 0.00 2.17
2153 6288 5.807011 GCATATGGTTTTGATTTCTGGTGTC 59.193 40.000 4.56 0.00 0.00 3.67
2165 6381 1.066858 TCTGGTGTCATTCGCCTCTTC 60.067 52.381 0.00 0.00 46.10 2.87
2183 6399 5.105146 CCTCTTCACTTTGTGGTCTAGCTAT 60.105 44.000 0.00 0.00 33.87 2.97
2188 6404 2.691409 TTGTGGTCTAGCTATGCACC 57.309 50.000 8.95 8.95 0.00 5.01
2192 6408 1.123928 GGTCTAGCTATGCACCTGGT 58.876 55.000 0.00 0.00 0.00 4.00
2207 6423 2.831526 ACCTGGTTAATGTTTGGCCATC 59.168 45.455 6.09 3.51 0.00 3.51
2224 6440 7.399245 TGGCCATCATCATAAATGATATGTG 57.601 36.000 0.00 5.20 45.23 3.21
2280 6496 2.414957 GGTAATGTTACCCAGCAAACGC 60.415 50.000 10.24 0.00 45.94 4.84
2281 6497 0.601057 AATGTTACCCAGCAAACGCC 59.399 50.000 0.00 0.00 0.00 5.68
2282 6498 0.538516 ATGTTACCCAGCAAACGCCA 60.539 50.000 0.00 0.00 0.00 5.69
2283 6499 0.538516 TGTTACCCAGCAAACGCCAT 60.539 50.000 0.00 0.00 0.00 4.40
2284 6500 0.601057 GTTACCCAGCAAACGCCATT 59.399 50.000 0.00 0.00 0.00 3.16
2285 6501 1.000394 GTTACCCAGCAAACGCCATTT 60.000 47.619 0.00 0.00 0.00 2.32
2301 6517 4.789012 CCATTTGATGGCAGTTGTAGTT 57.211 40.909 0.00 0.00 44.70 2.24
2302 6518 4.487948 CCATTTGATGGCAGTTGTAGTTG 58.512 43.478 0.00 0.00 44.70 3.16
2303 6519 4.022068 CCATTTGATGGCAGTTGTAGTTGT 60.022 41.667 0.00 0.00 44.70 3.32
2304 6520 4.566545 TTTGATGGCAGTTGTAGTTGTG 57.433 40.909 0.00 0.00 0.00 3.33
2305 6521 3.483808 TGATGGCAGTTGTAGTTGTGA 57.516 42.857 0.00 0.00 0.00 3.58
2306 6522 3.402110 TGATGGCAGTTGTAGTTGTGAG 58.598 45.455 0.00 0.00 0.00 3.51
2307 6523 2.254546 TGGCAGTTGTAGTTGTGAGG 57.745 50.000 0.00 0.00 0.00 3.86
2308 6524 1.765904 TGGCAGTTGTAGTTGTGAGGA 59.234 47.619 0.00 0.00 0.00 3.71
2309 6525 2.171659 TGGCAGTTGTAGTTGTGAGGAA 59.828 45.455 0.00 0.00 0.00 3.36
2310 6526 3.211045 GGCAGTTGTAGTTGTGAGGAAA 58.789 45.455 0.00 0.00 0.00 3.13
2311 6527 3.251004 GGCAGTTGTAGTTGTGAGGAAAG 59.749 47.826 0.00 0.00 0.00 2.62
2312 6528 4.127171 GCAGTTGTAGTTGTGAGGAAAGA 58.873 43.478 0.00 0.00 0.00 2.52
2313 6529 4.757149 GCAGTTGTAGTTGTGAGGAAAGAT 59.243 41.667 0.00 0.00 0.00 2.40
2314 6530 5.106908 GCAGTTGTAGTTGTGAGGAAAGATC 60.107 44.000 0.00 0.00 0.00 2.75
2315 6531 5.991606 CAGTTGTAGTTGTGAGGAAAGATCA 59.008 40.000 0.00 0.00 0.00 2.92
2316 6532 6.483307 CAGTTGTAGTTGTGAGGAAAGATCAA 59.517 38.462 0.00 0.00 0.00 2.57
2317 6533 7.012327 CAGTTGTAGTTGTGAGGAAAGATCAAA 59.988 37.037 0.00 0.00 0.00 2.69
2318 6534 6.861065 TGTAGTTGTGAGGAAAGATCAAAC 57.139 37.500 0.00 0.00 0.00 2.93
2319 6535 5.465390 TGTAGTTGTGAGGAAAGATCAAACG 59.535 40.000 0.00 0.00 0.00 3.60
2320 6536 4.703897 AGTTGTGAGGAAAGATCAAACGA 58.296 39.130 0.00 0.00 0.00 3.85
2321 6537 4.511826 AGTTGTGAGGAAAGATCAAACGAC 59.488 41.667 0.00 0.00 0.00 4.34
2322 6538 3.057019 TGTGAGGAAAGATCAAACGACG 58.943 45.455 0.00 0.00 0.00 5.12
2323 6539 2.412089 GTGAGGAAAGATCAAACGACGG 59.588 50.000 0.00 0.00 0.00 4.79
2324 6540 1.393883 GAGGAAAGATCAAACGACGGC 59.606 52.381 0.00 0.00 0.00 5.68
2325 6541 1.153353 GGAAAGATCAAACGACGGCA 58.847 50.000 0.00 0.00 0.00 5.69
2326 6542 1.128692 GGAAAGATCAAACGACGGCAG 59.871 52.381 0.00 0.00 0.00 4.85
2327 6543 1.798813 GAAAGATCAAACGACGGCAGT 59.201 47.619 0.00 0.00 0.00 4.40
2328 6544 1.878953 AAGATCAAACGACGGCAGTT 58.121 45.000 0.00 0.00 0.00 3.16
2329 6545 1.878953 AGATCAAACGACGGCAGTTT 58.121 45.000 5.56 5.56 41.90 2.66
2330 6546 2.218603 AGATCAAACGACGGCAGTTTT 58.781 42.857 8.23 0.00 39.50 2.43
2331 6547 3.395639 AGATCAAACGACGGCAGTTTTA 58.604 40.909 8.23 2.53 39.50 1.52
2332 6548 3.810941 AGATCAAACGACGGCAGTTTTAA 59.189 39.130 8.23 2.02 39.50 1.52
2333 6549 4.273969 AGATCAAACGACGGCAGTTTTAAA 59.726 37.500 8.23 0.00 39.50 1.52
2334 6550 4.352600 TCAAACGACGGCAGTTTTAAAA 57.647 36.364 8.23 0.00 39.50 1.52
2335 6551 4.097012 TCAAACGACGGCAGTTTTAAAAC 58.903 39.130 21.06 21.06 39.50 2.43
2336 6552 3.761311 AACGACGGCAGTTTTAAAACA 57.239 38.095 28.03 0.00 41.30 2.83
2337 6553 3.761311 ACGACGGCAGTTTTAAAACAA 57.239 38.095 28.03 0.00 41.30 2.83
2338 6554 4.094090 ACGACGGCAGTTTTAAAACAAA 57.906 36.364 28.03 0.00 41.30 2.83
2339 6555 4.483311 ACGACGGCAGTTTTAAAACAAAA 58.517 34.783 28.03 0.00 41.30 2.44
2340 6556 4.922103 ACGACGGCAGTTTTAAAACAAAAA 59.078 33.333 28.03 0.00 41.30 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.223330 ACCTAAAATGCAGATAATCAAGATCCT 58.777 33.333 0.00 0.00 0.00 3.24
1 2 8.295288 CACCTAAAATGCAGATAATCAAGATCC 58.705 37.037 0.00 0.00 0.00 3.36
2 3 8.295288 CCACCTAAAATGCAGATAATCAAGATC 58.705 37.037 0.00 0.00 0.00 2.75
3 4 7.781693 ACCACCTAAAATGCAGATAATCAAGAT 59.218 33.333 0.00 0.00 0.00 2.40
4 5 7.067372 CACCACCTAAAATGCAGATAATCAAGA 59.933 37.037 0.00 0.00 0.00 3.02
5 6 7.148018 ACACCACCTAAAATGCAGATAATCAAG 60.148 37.037 0.00 0.00 0.00 3.02
6 7 6.663093 ACACCACCTAAAATGCAGATAATCAA 59.337 34.615 0.00 0.00 0.00 2.57
7 8 6.095300 CACACCACCTAAAATGCAGATAATCA 59.905 38.462 0.00 0.00 0.00 2.57
8 9 6.498304 CACACCACCTAAAATGCAGATAATC 58.502 40.000 0.00 0.00 0.00 1.75
9 10 5.163519 GCACACCACCTAAAATGCAGATAAT 60.164 40.000 0.00 0.00 33.27 1.28
10 11 4.157656 GCACACCACCTAAAATGCAGATAA 59.842 41.667 0.00 0.00 33.27 1.75
11 12 3.694072 GCACACCACCTAAAATGCAGATA 59.306 43.478 0.00 0.00 33.27 1.98
12 13 2.493278 GCACACCACCTAAAATGCAGAT 59.507 45.455 0.00 0.00 33.27 2.90
13 14 1.885887 GCACACCACCTAAAATGCAGA 59.114 47.619 0.00 0.00 33.27 4.26
14 15 1.612950 TGCACACCACCTAAAATGCAG 59.387 47.619 0.00 0.00 38.11 4.41
15 16 1.697284 TGCACACCACCTAAAATGCA 58.303 45.000 0.00 0.00 40.57 3.96
16 17 2.035832 ACTTGCACACCACCTAAAATGC 59.964 45.455 0.00 0.00 0.00 3.56
17 18 3.641648 CACTTGCACACCACCTAAAATG 58.358 45.455 0.00 0.00 0.00 2.32
18 19 2.035832 GCACTTGCACACCACCTAAAAT 59.964 45.455 0.00 0.00 41.59 1.82
19 20 1.407258 GCACTTGCACACCACCTAAAA 59.593 47.619 0.00 0.00 41.59 1.52
20 21 1.028905 GCACTTGCACACCACCTAAA 58.971 50.000 0.00 0.00 41.59 1.85
21 22 2.714259 GCACTTGCACACCACCTAA 58.286 52.632 0.00 0.00 41.59 2.69
22 23 4.473643 GCACTTGCACACCACCTA 57.526 55.556 0.00 0.00 41.59 3.08
75 258 3.845781 AGACAATGACAACTGACAGGT 57.154 42.857 7.51 0.00 0.00 4.00
100 283 1.145377 GGCCTGGTATGGTGTACCG 59.855 63.158 0.00 0.00 40.39 4.02
187 375 7.129504 AGGGGAGACATTGGAGAATTAATACTT 59.870 37.037 0.00 0.00 0.00 2.24
207 395 2.682269 GCCTAGAAGAAAGCAAGGGGAG 60.682 54.545 0.00 0.00 0.00 4.30
216 404 2.774234 TGAGGGATGGCCTAGAAGAAAG 59.226 50.000 3.32 0.00 0.00 2.62
218 406 2.568546 TGAGGGATGGCCTAGAAGAA 57.431 50.000 3.32 0.00 0.00 2.52
219 407 2.568546 TTGAGGGATGGCCTAGAAGA 57.431 50.000 3.32 0.00 0.00 2.87
220 408 3.652057 TTTTGAGGGATGGCCTAGAAG 57.348 47.619 3.32 0.00 0.00 2.85
243 431 8.520351 GCTGGCCTAGAAGAAAGTTTATTTTTA 58.480 33.333 3.32 0.00 0.00 1.52
244 432 7.015195 TGCTGGCCTAGAAGAAAGTTTATTTTT 59.985 33.333 3.32 0.00 0.00 1.94
245 433 6.493458 TGCTGGCCTAGAAGAAAGTTTATTTT 59.507 34.615 3.32 0.00 0.00 1.82
246 434 6.010219 TGCTGGCCTAGAAGAAAGTTTATTT 58.990 36.000 3.32 0.00 0.00 1.40
247 435 5.570320 TGCTGGCCTAGAAGAAAGTTTATT 58.430 37.500 3.32 0.00 0.00 1.40
248 436 5.179452 TGCTGGCCTAGAAGAAAGTTTAT 57.821 39.130 3.32 0.00 0.00 1.40
249 437 4.634012 TGCTGGCCTAGAAGAAAGTTTA 57.366 40.909 3.32 0.00 0.00 2.01
250 438 3.508845 TGCTGGCCTAGAAGAAAGTTT 57.491 42.857 3.32 0.00 0.00 2.66
251 439 3.728385 ATGCTGGCCTAGAAGAAAGTT 57.272 42.857 3.32 0.00 0.00 2.66
252 440 3.728385 AATGCTGGCCTAGAAGAAAGT 57.272 42.857 3.32 0.00 0.00 2.66
253 441 3.563390 GCTAATGCTGGCCTAGAAGAAAG 59.437 47.826 3.32 0.00 36.03 2.62
320 508 8.964476 TTGAAGGAGTAGATACATTCATTTCC 57.036 34.615 0.00 0.00 30.82 3.13
322 510 9.739276 TGTTTGAAGGAGTAGATACATTCATTT 57.261 29.630 0.00 0.00 30.82 2.32
323 511 9.739276 TTGTTTGAAGGAGTAGATACATTCATT 57.261 29.630 0.00 0.00 30.82 2.57
324 512 9.167311 GTTGTTTGAAGGAGTAGATACATTCAT 57.833 33.333 0.00 0.00 30.82 2.57
325 513 8.154203 TGTTGTTTGAAGGAGTAGATACATTCA 58.846 33.333 0.00 0.00 0.00 2.57
327 515 7.607991 CCTGTTGTTTGAAGGAGTAGATACATT 59.392 37.037 0.00 0.00 32.43 2.71
328 516 7.038302 TCCTGTTGTTTGAAGGAGTAGATACAT 60.038 37.037 0.00 0.00 35.14 2.29
329 517 6.269077 TCCTGTTGTTTGAAGGAGTAGATACA 59.731 38.462 0.00 0.00 35.14 2.29
330 518 6.698380 TCCTGTTGTTTGAAGGAGTAGATAC 58.302 40.000 0.00 0.00 35.14 2.24
331 519 6.928348 TCCTGTTGTTTGAAGGAGTAGATA 57.072 37.500 0.00 0.00 35.14 1.98
332 520 5.825593 TCCTGTTGTTTGAAGGAGTAGAT 57.174 39.130 0.00 0.00 35.14 1.98
333 521 5.623956 TTCCTGTTGTTTGAAGGAGTAGA 57.376 39.130 0.00 0.00 41.08 2.59
334 522 5.278022 GCTTTCCTGTTGTTTGAAGGAGTAG 60.278 44.000 0.00 0.00 41.08 2.57
335 523 4.578928 GCTTTCCTGTTGTTTGAAGGAGTA 59.421 41.667 0.00 0.00 41.08 2.59
336 524 3.381590 GCTTTCCTGTTGTTTGAAGGAGT 59.618 43.478 0.00 0.00 41.08 3.85
337 525 3.381272 TGCTTTCCTGTTGTTTGAAGGAG 59.619 43.478 0.00 0.00 41.08 3.69
338 526 3.360867 TGCTTTCCTGTTGTTTGAAGGA 58.639 40.909 0.00 0.00 38.35 3.36
339 527 3.381272 TCTGCTTTCCTGTTGTTTGAAGG 59.619 43.478 0.00 0.00 0.00 3.46
340 528 4.142403 TGTCTGCTTTCCTGTTGTTTGAAG 60.142 41.667 0.00 0.00 0.00 3.02
341 529 3.761218 TGTCTGCTTTCCTGTTGTTTGAA 59.239 39.130 0.00 0.00 0.00 2.69
342 530 3.128589 GTGTCTGCTTTCCTGTTGTTTGA 59.871 43.478 0.00 0.00 0.00 2.69
343 531 3.438360 GTGTCTGCTTTCCTGTTGTTTG 58.562 45.455 0.00 0.00 0.00 2.93
344 532 2.097466 CGTGTCTGCTTTCCTGTTGTTT 59.903 45.455 0.00 0.00 0.00 2.83
345 533 1.670811 CGTGTCTGCTTTCCTGTTGTT 59.329 47.619 0.00 0.00 0.00 2.83
346 534 1.299541 CGTGTCTGCTTTCCTGTTGT 58.700 50.000 0.00 0.00 0.00 3.32
347 535 0.040958 GCGTGTCTGCTTTCCTGTTG 60.041 55.000 0.00 0.00 0.00 3.33
348 536 0.463654 TGCGTGTCTGCTTTCCTGTT 60.464 50.000 0.00 0.00 35.36 3.16
349 537 0.250467 ATGCGTGTCTGCTTTCCTGT 60.250 50.000 0.00 0.00 35.36 4.00
350 538 0.445436 GATGCGTGTCTGCTTTCCTG 59.555 55.000 0.00 0.00 35.36 3.86
351 539 0.674895 GGATGCGTGTCTGCTTTCCT 60.675 55.000 0.00 0.00 35.95 3.36
352 540 0.674895 AGGATGCGTGTCTGCTTTCC 60.675 55.000 0.00 0.00 37.81 3.13
353 541 1.661112 GTAGGATGCGTGTCTGCTTTC 59.339 52.381 0.00 0.00 35.36 2.62
354 542 1.676014 GGTAGGATGCGTGTCTGCTTT 60.676 52.381 0.00 0.00 35.36 3.51
355 543 0.108138 GGTAGGATGCGTGTCTGCTT 60.108 55.000 0.00 0.00 35.36 3.91
356 544 1.517832 GGTAGGATGCGTGTCTGCT 59.482 57.895 0.00 0.00 35.36 4.24
357 545 1.521681 GGGTAGGATGCGTGTCTGC 60.522 63.158 0.00 0.00 0.00 4.26
358 546 1.226974 CGGGTAGGATGCGTGTCTG 60.227 63.158 0.00 0.00 0.00 3.51
359 547 3.077519 GCGGGTAGGATGCGTGTCT 62.078 63.158 0.00 0.00 0.00 3.41
360 548 2.585247 GCGGGTAGGATGCGTGTC 60.585 66.667 0.00 0.00 0.00 3.67
361 549 2.644555 GATGCGGGTAGGATGCGTGT 62.645 60.000 0.00 0.00 0.00 4.49
362 550 1.956170 GATGCGGGTAGGATGCGTG 60.956 63.158 0.00 0.00 0.00 5.34
363 551 1.966901 TTGATGCGGGTAGGATGCGT 61.967 55.000 0.00 0.00 0.00 5.24
364 552 0.603707 ATTGATGCGGGTAGGATGCG 60.604 55.000 0.00 0.00 0.00 4.73
365 553 0.877071 CATTGATGCGGGTAGGATGC 59.123 55.000 0.00 0.00 0.00 3.91
366 554 0.877071 GCATTGATGCGGGTAGGATG 59.123 55.000 0.00 0.00 44.67 3.51
367 555 3.329300 GCATTGATGCGGGTAGGAT 57.671 52.632 0.00 0.00 44.67 3.24
368 556 4.876701 GCATTGATGCGGGTAGGA 57.123 55.556 0.00 0.00 44.67 2.94
377 565 0.183014 AGAGGGCAGAGGCATTGATG 59.817 55.000 0.00 0.00 43.71 3.07
378 566 0.473326 GAGAGGGCAGAGGCATTGAT 59.527 55.000 0.00 0.00 43.71 2.57
379 567 1.910722 GAGAGGGCAGAGGCATTGA 59.089 57.895 0.00 0.00 43.71 2.57
380 568 1.523258 CGAGAGGGCAGAGGCATTG 60.523 63.158 0.00 0.00 43.71 2.82
381 569 2.906458 CGAGAGGGCAGAGGCATT 59.094 61.111 0.00 0.00 43.71 3.56
393 581 2.202987 GGCTGTCATGGCCGAGAG 60.203 66.667 0.00 0.00 40.19 3.20
445 633 8.488668 ACGGGGAGCTTAGTTAATTAATTAAGA 58.511 33.333 30.05 9.04 37.56 2.10
448 636 8.488668 AGAACGGGGAGCTTAGTTAATTAATTA 58.511 33.333 3.71 3.71 0.00 1.40
452 640 5.945144 AGAACGGGGAGCTTAGTTAATTA 57.055 39.130 0.00 0.00 0.00 1.40
608 801 8.948145 TGTACGTTTGTATAAATAAAGTGGCAT 58.052 29.630 0.00 0.00 32.11 4.40
609 802 8.229137 GTGTACGTTTGTATAAATAAAGTGGCA 58.771 33.333 0.00 0.00 32.11 4.92
648 846 4.040339 CCCAAAGCTGGAATTTTTGGTACT 59.960 41.667 14.53 0.00 46.92 2.73
650 848 4.227197 TCCCAAAGCTGGAATTTTTGGTA 58.773 39.130 14.53 0.21 46.92 3.25
716 915 2.643232 GCTTCCCCAGCTGCCAAAG 61.643 63.158 8.66 11.50 46.27 2.77
926 1133 1.953138 GCAGGAGCGACGGATGATG 60.953 63.158 0.00 0.00 0.00 3.07
927 1134 2.419198 GCAGGAGCGACGGATGAT 59.581 61.111 0.00 0.00 0.00 2.45
1248 1457 1.553690 CCTCCTCCGCCTTCCAAAGA 61.554 60.000 0.00 0.00 0.00 2.52
1251 1460 3.009115 CCCTCCTCCGCCTTCCAA 61.009 66.667 0.00 0.00 0.00 3.53
1333 1542 4.672801 GCGGAAAAGAATGAATCACTGGAC 60.673 45.833 0.00 0.00 0.00 4.02
1437 2868 4.436050 CGTGCCTGATTTACAAGCTACAAG 60.436 45.833 0.00 0.00 36.93 3.16
1444 2877 0.096976 CCGCGTGCCTGATTTACAAG 59.903 55.000 4.92 0.00 0.00 3.16
1495 2928 7.589954 CACCATTCCAAACGAACTACTAAAAAG 59.410 37.037 0.00 0.00 31.79 2.27
1501 2934 4.345859 TCACCATTCCAAACGAACTACT 57.654 40.909 0.00 0.00 31.79 2.57
1502 2935 4.693566 TCATCACCATTCCAAACGAACTAC 59.306 41.667 0.00 0.00 31.79 2.73
1503 2936 4.900684 TCATCACCATTCCAAACGAACTA 58.099 39.130 0.00 0.00 31.79 2.24
1519 2952 7.229306 TGCCCTATTTTCTTCATGTATCATCAC 59.771 37.037 0.00 0.00 0.00 3.06
1523 2956 6.899089 TCTGCCCTATTTTCTTCATGTATCA 58.101 36.000 0.00 0.00 0.00 2.15
1539 3136 4.955811 AACATTCGTCATATCTGCCCTA 57.044 40.909 0.00 0.00 0.00 3.53
1645 4946 6.582636 TGTAAGGAGCTAATGAGTTGGTATG 58.417 40.000 0.00 0.00 0.00 2.39
1727 5742 9.733556 TGAACATGATAACATTTACCTTGTACT 57.266 29.630 0.00 0.00 34.15 2.73
1728 5743 9.769093 GTGAACATGATAACATTTACCTTGTAC 57.231 33.333 0.00 0.00 34.15 2.90
1916 6050 6.432107 GTCATTTTACGAGCACCAAACTTTA 58.568 36.000 0.00 0.00 0.00 1.85
1967 6101 2.872245 TCTGGTCAAAAGCGTCTGAAAG 59.128 45.455 0.00 0.00 0.00 2.62
2027 6161 8.129840 CCGAAATTCCTACGATATAGGTATCTG 58.870 40.741 0.00 0.00 35.57 2.90
2041 6175 6.864165 TGTTAAAAATGCACCGAAATTCCTAC 59.136 34.615 0.00 0.00 0.00 3.18
2042 6176 6.982852 TGTTAAAAATGCACCGAAATTCCTA 58.017 32.000 0.00 0.00 0.00 2.94
2070 6204 0.392706 TGTGTGCCGATGACACTTCT 59.607 50.000 11.29 0.00 43.50 2.85
2071 6205 0.512952 GTGTGTGCCGATGACACTTC 59.487 55.000 11.29 3.73 43.50 3.01
2102 6236 2.032550 CACTCACAAAGCCAACTCACAG 59.967 50.000 0.00 0.00 0.00 3.66
2134 6269 5.507149 CGAATGACACCAGAAATCAAAACCA 60.507 40.000 0.00 0.00 0.00 3.67
2138 6273 3.057596 GGCGAATGACACCAGAAATCAAA 60.058 43.478 0.00 0.00 0.00 2.69
2146 6281 1.338105 TGAAGAGGCGAATGACACCAG 60.338 52.381 0.00 0.00 0.00 4.00
2153 6288 2.095567 CCACAAAGTGAAGAGGCGAATG 60.096 50.000 0.00 0.00 35.23 2.67
2165 6381 3.372206 GTGCATAGCTAGACCACAAAGTG 59.628 47.826 13.32 0.00 0.00 3.16
2183 6399 1.342819 GCCAAACATTAACCAGGTGCA 59.657 47.619 0.00 0.00 0.00 4.57
2188 6404 4.160065 TGATGATGGCCAAACATTAACCAG 59.840 41.667 23.31 0.00 33.03 4.00
2192 6408 8.702819 TCATTTATGATGATGGCCAAACATTAA 58.297 29.630 23.31 18.22 31.77 1.40
2281 6497 4.919168 CACAACTACAACTGCCATCAAATG 59.081 41.667 0.00 0.00 0.00 2.32
2282 6498 4.826733 TCACAACTACAACTGCCATCAAAT 59.173 37.500 0.00 0.00 0.00 2.32
2283 6499 4.203226 TCACAACTACAACTGCCATCAAA 58.797 39.130 0.00 0.00 0.00 2.69
2284 6500 3.814625 TCACAACTACAACTGCCATCAA 58.185 40.909 0.00 0.00 0.00 2.57
2285 6501 3.402110 CTCACAACTACAACTGCCATCA 58.598 45.455 0.00 0.00 0.00 3.07
2286 6502 2.744202 CCTCACAACTACAACTGCCATC 59.256 50.000 0.00 0.00 0.00 3.51
2287 6503 2.371841 TCCTCACAACTACAACTGCCAT 59.628 45.455 0.00 0.00 0.00 4.40
2288 6504 1.765904 TCCTCACAACTACAACTGCCA 59.234 47.619 0.00 0.00 0.00 4.92
2289 6505 2.543777 TCCTCACAACTACAACTGCC 57.456 50.000 0.00 0.00 0.00 4.85
2290 6506 4.127171 TCTTTCCTCACAACTACAACTGC 58.873 43.478 0.00 0.00 0.00 4.40
2291 6507 5.991606 TGATCTTTCCTCACAACTACAACTG 59.008 40.000 0.00 0.00 0.00 3.16
2292 6508 6.174720 TGATCTTTCCTCACAACTACAACT 57.825 37.500 0.00 0.00 0.00 3.16
2293 6509 6.861065 TTGATCTTTCCTCACAACTACAAC 57.139 37.500 0.00 0.00 0.00 3.32
2294 6510 6.018262 CGTTTGATCTTTCCTCACAACTACAA 60.018 38.462 0.00 0.00 0.00 2.41
2295 6511 5.465390 CGTTTGATCTTTCCTCACAACTACA 59.535 40.000 0.00 0.00 0.00 2.74
2296 6512 5.694910 TCGTTTGATCTTTCCTCACAACTAC 59.305 40.000 0.00 0.00 0.00 2.73
2297 6513 5.694910 GTCGTTTGATCTTTCCTCACAACTA 59.305 40.000 0.00 0.00 0.00 2.24
2298 6514 4.511826 GTCGTTTGATCTTTCCTCACAACT 59.488 41.667 0.00 0.00 0.00 3.16
2299 6515 4.608445 CGTCGTTTGATCTTTCCTCACAAC 60.608 45.833 0.00 0.00 0.00 3.32
2300 6516 3.493129 CGTCGTTTGATCTTTCCTCACAA 59.507 43.478 0.00 0.00 0.00 3.33
2301 6517 3.057019 CGTCGTTTGATCTTTCCTCACA 58.943 45.455 0.00 0.00 0.00 3.58
2302 6518 2.412089 CCGTCGTTTGATCTTTCCTCAC 59.588 50.000 0.00 0.00 0.00 3.51
2303 6519 2.683968 CCGTCGTTTGATCTTTCCTCA 58.316 47.619 0.00 0.00 0.00 3.86
2304 6520 1.393883 GCCGTCGTTTGATCTTTCCTC 59.606 52.381 0.00 0.00 0.00 3.71
2305 6521 1.270625 TGCCGTCGTTTGATCTTTCCT 60.271 47.619 0.00 0.00 0.00 3.36
2306 6522 1.128692 CTGCCGTCGTTTGATCTTTCC 59.871 52.381 0.00 0.00 0.00 3.13
2307 6523 1.798813 ACTGCCGTCGTTTGATCTTTC 59.201 47.619 0.00 0.00 0.00 2.62
2308 6524 1.878953 ACTGCCGTCGTTTGATCTTT 58.121 45.000 0.00 0.00 0.00 2.52
2309 6525 1.878953 AACTGCCGTCGTTTGATCTT 58.121 45.000 0.00 0.00 0.00 2.40
2310 6526 1.878953 AAACTGCCGTCGTTTGATCT 58.121 45.000 0.00 0.00 33.64 2.75
2311 6527 2.681152 AAAACTGCCGTCGTTTGATC 57.319 45.000 0.00 0.00 35.00 2.92
2312 6528 4.555348 TTTAAAACTGCCGTCGTTTGAT 57.445 36.364 0.00 0.00 35.00 2.57
2313 6529 4.097012 GTTTTAAAACTGCCGTCGTTTGA 58.903 39.130 21.27 0.00 35.00 2.69
2314 6530 3.852536 TGTTTTAAAACTGCCGTCGTTTG 59.147 39.130 26.76 0.00 39.59 2.93
2315 6531 4.094090 TGTTTTAAAACTGCCGTCGTTT 57.906 36.364 26.76 0.00 39.59 3.60
2316 6532 3.761311 TGTTTTAAAACTGCCGTCGTT 57.239 38.095 26.76 0.00 39.59 3.85
2317 6533 3.761311 TTGTTTTAAAACTGCCGTCGT 57.239 38.095 26.76 0.00 39.59 4.34
2318 6534 5.437383 TTTTTGTTTTAAAACTGCCGTCG 57.563 34.783 26.76 0.00 39.59 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.