Multiple sequence alignment - TraesCS5D01G274200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G274200 chr5D 100.000 6268 0 0 1 6268 377355717 377361984 0.000000e+00 11575
1 TraesCS5D01G274200 chr5D 87.661 389 33 10 4650 5030 69675024 69675405 7.460000e-119 438
2 TraesCS5D01G274200 chr5B 97.037 4792 111 20 598 5382 450660182 450664949 0.000000e+00 8034
3 TraesCS5D01G274200 chr5B 97.136 803 21 2 5468 6268 35185013 35185815 0.000000e+00 1354
4 TraesCS5D01G274200 chr5B 94.253 87 4 1 476 562 450660137 450660222 1.420000e-26 132
5 TraesCS5D01G274200 chr5B 90.476 84 5 1 5383 5466 450664992 450665072 2.390000e-19 108
6 TraesCS5D01G274200 chr5A 97.080 4076 92 11 496 4558 477996797 478000858 0.000000e+00 6842
7 TraesCS5D01G274200 chr5A 97.317 559 14 1 4667 5225 478000859 478001416 0.000000e+00 948
8 TraesCS5D01G274200 chr5A 88.415 164 7 10 5222 5382 478001671 478001825 2.980000e-43 187
9 TraesCS5D01G274200 chr6D 98.254 802 11 3 5470 6268 119965197 119965998 0.000000e+00 1400
10 TraesCS5D01G274200 chr3D 98.132 803 11 3 5470 6268 397784174 397784976 0.000000e+00 1397
11 TraesCS5D01G274200 chr3D 89.378 386 26 5 4653 5030 335212568 335212946 7.360000e-129 472
12 TraesCS5D01G274200 chr1D 98.130 802 13 2 5469 6268 62577880 62578681 0.000000e+00 1397
13 TraesCS5D01G274200 chr7D 97.758 803 15 3 5468 6268 13323227 13322426 0.000000e+00 1380
14 TraesCS5D01G274200 chr7D 89.119 386 27 5 4653 5030 573797392 573797770 3.420000e-127 466
15 TraesCS5D01G274200 chr6B 97.132 802 20 3 5469 6268 207153871 207153071 0.000000e+00 1351
16 TraesCS5D01G274200 chr1A 96.463 820 24 4 5452 6268 432967909 432967092 0.000000e+00 1349
17 TraesCS5D01G274200 chr1A 87.817 394 30 7 4645 5030 163094942 163095325 4.460000e-121 446
18 TraesCS5D01G274200 chr4A 96.762 803 24 2 5468 6268 604663575 604664377 0.000000e+00 1338
19 TraesCS5D01G274200 chr1B 96.264 803 26 3 5470 6268 395265692 395264890 0.000000e+00 1314
20 TraesCS5D01G274200 chr2A 89.119 386 27 5 4653 5030 448555430 448555052 3.420000e-127 466


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G274200 chr5D 377355717 377361984 6267 False 11575 11575 100.000000 1 6268 1 chr5D.!!$F2 6267
1 TraesCS5D01G274200 chr5B 450660137 450665072 4935 False 2758 8034 93.922000 476 5466 3 chr5B.!!$F2 4990
2 TraesCS5D01G274200 chr5B 35185013 35185815 802 False 1354 1354 97.136000 5468 6268 1 chr5B.!!$F1 800
3 TraesCS5D01G274200 chr5A 477996797 478001825 5028 False 2659 6842 94.270667 496 5382 3 chr5A.!!$F1 4886
4 TraesCS5D01G274200 chr6D 119965197 119965998 801 False 1400 1400 98.254000 5470 6268 1 chr6D.!!$F1 798
5 TraesCS5D01G274200 chr3D 397784174 397784976 802 False 1397 1397 98.132000 5470 6268 1 chr3D.!!$F2 798
6 TraesCS5D01G274200 chr1D 62577880 62578681 801 False 1397 1397 98.130000 5469 6268 1 chr1D.!!$F1 799
7 TraesCS5D01G274200 chr7D 13322426 13323227 801 True 1380 1380 97.758000 5468 6268 1 chr7D.!!$R1 800
8 TraesCS5D01G274200 chr6B 207153071 207153871 800 True 1351 1351 97.132000 5469 6268 1 chr6B.!!$R1 799
9 TraesCS5D01G274200 chr1A 432967092 432967909 817 True 1349 1349 96.463000 5452 6268 1 chr1A.!!$R1 816
10 TraesCS5D01G274200 chr4A 604663575 604664377 802 False 1338 1338 96.762000 5468 6268 1 chr4A.!!$F1 800
11 TraesCS5D01G274200 chr1B 395264890 395265692 802 True 1314 1314 96.264000 5470 6268 1 chr1B.!!$R1 798

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.034896 AGCGAACCGTTGGAGATTGT 59.965 50.000 0.00 0.00 0.00 2.71 F
264 265 0.179078 ACGGTGAACAAACCTACGCA 60.179 50.000 0.00 0.00 38.14 5.24 F
265 266 0.233848 CGGTGAACAAACCTACGCAC 59.766 55.000 0.00 0.00 38.14 5.34 F
602 680 0.388263 GAACCGGGAAGTCTCGTGTC 60.388 60.000 6.32 0.00 0.00 3.67 F
1690 1777 0.831711 ACTTGGCCGGGCAGAAAAAT 60.832 50.000 30.86 11.02 0.00 1.82 F
2773 2864 1.132453 GCTAAAAGGCAACGACCATCC 59.868 52.381 0.00 0.00 46.39 3.51 F
3928 4022 1.065491 TGGGAACGTGATGATCAAGGG 60.065 52.381 12.73 1.13 30.01 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1348 1435 0.323360 AGGGCCGTGCAAATGTACAT 60.323 50.000 1.41 1.41 0.00 2.29 R
1690 1777 3.071312 ACAAGCCATGCAAAAGAATGGAA 59.929 39.130 6.67 0.00 45.29 3.53 R
1777 1864 4.065088 AGGCACAATATATACTTGGTGCG 58.935 43.478 16.86 0.00 34.43 5.34 R
2585 2675 3.513515 GGAAAAATGGGTCCTGTATGCAA 59.486 43.478 0.00 0.00 0.00 4.08 R
3483 3577 0.249398 ATTTCCGAACGGAGGGAGTG 59.751 55.000 15.34 0.00 46.06 3.51 R
4299 4393 3.303351 AGTAAGCCTTTCCCCATCATG 57.697 47.619 0.00 0.00 0.00 3.07 R
5442 5835 0.035458 AGCCTTCAACTCGTTCCAGG 59.965 55.000 1.12 1.12 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.414750 CCCCAATTCCGTGGTATGC 58.585 57.895 0.00 0.00 36.90 3.14
19 20 1.106944 CCCCAATTCCGTGGTATGCC 61.107 60.000 0.00 0.00 36.90 4.40
20 21 0.106719 CCCAATTCCGTGGTATGCCT 60.107 55.000 0.16 0.00 36.90 4.75
21 22 1.142060 CCCAATTCCGTGGTATGCCTA 59.858 52.381 0.16 0.00 36.90 3.93
22 23 2.422235 CCCAATTCCGTGGTATGCCTAA 60.422 50.000 0.16 0.00 36.90 2.69
23 24 3.283751 CCAATTCCGTGGTATGCCTAAA 58.716 45.455 0.16 0.00 33.63 1.85
24 25 3.697045 CCAATTCCGTGGTATGCCTAAAA 59.303 43.478 0.16 0.00 33.63 1.52
25 26 4.439563 CCAATTCCGTGGTATGCCTAAAAC 60.440 45.833 0.16 0.00 33.63 2.43
26 27 3.420300 TTCCGTGGTATGCCTAAAACA 57.580 42.857 0.16 0.00 35.27 2.83
27 28 2.702261 TCCGTGGTATGCCTAAAACAC 58.298 47.619 0.16 0.00 35.27 3.32
28 29 2.038689 TCCGTGGTATGCCTAAAACACA 59.961 45.455 0.16 0.00 35.27 3.72
29 30 3.013921 CCGTGGTATGCCTAAAACACAT 58.986 45.455 0.16 0.00 35.27 3.21
30 31 4.081031 TCCGTGGTATGCCTAAAACACATA 60.081 41.667 0.16 0.00 35.27 2.29
31 32 4.034742 CCGTGGTATGCCTAAAACACATAC 59.965 45.833 0.16 0.00 43.43 2.39
32 33 4.632251 CGTGGTATGCCTAAAACACATACA 59.368 41.667 12.79 0.00 45.09 2.29
33 34 5.295787 CGTGGTATGCCTAAAACACATACAT 59.704 40.000 12.79 0.00 45.09 2.29
34 35 6.480651 CGTGGTATGCCTAAAACACATACATA 59.519 38.462 12.79 1.21 45.09 2.29
35 36 7.517734 CGTGGTATGCCTAAAACACATACATAC 60.518 40.741 12.79 10.14 45.09 2.39
36 37 7.497909 GTGGTATGCCTAAAACACATACATACT 59.502 37.037 12.79 0.00 45.09 2.12
37 38 7.713507 TGGTATGCCTAAAACACATACATACTC 59.286 37.037 12.79 0.00 45.09 2.59
38 39 7.931948 GGTATGCCTAAAACACATACATACTCT 59.068 37.037 12.79 0.00 45.09 3.24
39 40 9.326413 GTATGCCTAAAACACATACATACTCTT 57.674 33.333 7.34 0.00 43.56 2.85
41 42 8.712285 TGCCTAAAACACATACATACTCTTAC 57.288 34.615 0.00 0.00 0.00 2.34
42 43 8.315482 TGCCTAAAACACATACATACTCTTACA 58.685 33.333 0.00 0.00 0.00 2.41
43 44 9.326413 GCCTAAAACACATACATACTCTTACAT 57.674 33.333 0.00 0.00 0.00 2.29
49 50 9.944376 AACACATACATACTCTTACATTTGACT 57.056 29.630 0.00 0.00 0.00 3.41
59 60 8.948631 ACTCTTACATTTGACTATACACCATG 57.051 34.615 0.00 0.00 0.00 3.66
60 61 8.540388 ACTCTTACATTTGACTATACACCATGT 58.460 33.333 0.00 0.00 32.33 3.21
61 62 9.383519 CTCTTACATTTGACTATACACCATGTT 57.616 33.333 0.00 0.00 31.01 2.71
62 63 9.378551 TCTTACATTTGACTATACACCATGTTC 57.621 33.333 0.00 0.00 31.01 3.18
63 64 8.500753 TTACATTTGACTATACACCATGTTCC 57.499 34.615 0.00 0.00 31.01 3.62
64 65 6.721318 ACATTTGACTATACACCATGTTCCT 58.279 36.000 0.00 0.00 0.00 3.36
65 66 6.823689 ACATTTGACTATACACCATGTTCCTC 59.176 38.462 0.00 0.00 0.00 3.71
66 67 6.367374 TTTGACTATACACCATGTTCCTCA 57.633 37.500 0.00 0.00 0.00 3.86
67 68 6.367374 TTGACTATACACCATGTTCCTCAA 57.633 37.500 0.00 0.00 0.00 3.02
68 69 5.977635 TGACTATACACCATGTTCCTCAAG 58.022 41.667 0.00 0.00 0.00 3.02
69 70 5.719563 TGACTATACACCATGTTCCTCAAGA 59.280 40.000 0.00 0.00 0.00 3.02
70 71 6.384015 TGACTATACACCATGTTCCTCAAGAT 59.616 38.462 0.00 0.00 0.00 2.40
71 72 7.092891 TGACTATACACCATGTTCCTCAAGATT 60.093 37.037 0.00 0.00 0.00 2.40
72 73 7.633789 ACTATACACCATGTTCCTCAAGATTT 58.366 34.615 0.00 0.00 0.00 2.17
73 74 6.764308 ATACACCATGTTCCTCAAGATTTG 57.236 37.500 0.00 0.00 0.00 2.32
74 75 3.828451 ACACCATGTTCCTCAAGATTTGG 59.172 43.478 0.00 0.00 0.00 3.28
75 76 3.828451 CACCATGTTCCTCAAGATTTGGT 59.172 43.478 0.00 0.00 33.77 3.67
76 77 3.828451 ACCATGTTCCTCAAGATTTGGTG 59.172 43.478 0.00 0.00 32.83 4.17
77 78 3.194116 CCATGTTCCTCAAGATTTGGTGG 59.806 47.826 0.00 0.00 0.00 4.61
78 79 3.593442 TGTTCCTCAAGATTTGGTGGT 57.407 42.857 0.00 0.00 0.00 4.16
79 80 4.715534 TGTTCCTCAAGATTTGGTGGTA 57.284 40.909 0.00 0.00 0.00 3.25
80 81 5.055265 TGTTCCTCAAGATTTGGTGGTAA 57.945 39.130 0.00 0.00 0.00 2.85
81 82 5.450453 TGTTCCTCAAGATTTGGTGGTAAA 58.550 37.500 0.00 0.00 0.00 2.01
82 83 6.074648 TGTTCCTCAAGATTTGGTGGTAAAT 58.925 36.000 0.00 0.00 33.19 1.40
83 84 6.208599 TGTTCCTCAAGATTTGGTGGTAAATC 59.791 38.462 0.00 0.00 43.88 2.17
84 85 5.886609 TCCTCAAGATTTGGTGGTAAATCA 58.113 37.500 12.19 0.00 45.23 2.57
85 86 6.493166 TCCTCAAGATTTGGTGGTAAATCAT 58.507 36.000 12.19 0.00 45.23 2.45
86 87 7.638444 TCCTCAAGATTTGGTGGTAAATCATA 58.362 34.615 12.19 0.00 45.23 2.15
87 88 7.556275 TCCTCAAGATTTGGTGGTAAATCATAC 59.444 37.037 12.19 0.00 45.23 2.39
88 89 7.339212 CCTCAAGATTTGGTGGTAAATCATACA 59.661 37.037 12.19 0.00 45.23 2.29
89 90 8.821686 TCAAGATTTGGTGGTAAATCATACAT 57.178 30.769 12.19 0.00 45.23 2.29
90 91 9.913310 TCAAGATTTGGTGGTAAATCATACATA 57.087 29.630 12.19 0.00 45.23 2.29
91 92 9.950680 CAAGATTTGGTGGTAAATCATACATAC 57.049 33.333 12.19 0.00 45.23 2.39
92 93 9.920946 AAGATTTGGTGGTAAATCATACATACT 57.079 29.630 12.19 0.00 45.23 2.12
93 94 9.920946 AGATTTGGTGGTAAATCATACATACTT 57.079 29.630 12.19 0.00 45.23 2.24
94 95 9.950680 GATTTGGTGGTAAATCATACATACTTG 57.049 33.333 0.00 0.00 43.32 3.16
95 96 9.693739 ATTTGGTGGTAAATCATACATACTTGA 57.306 29.630 0.00 0.00 0.00 3.02
96 97 9.693739 TTTGGTGGTAAATCATACATACTTGAT 57.306 29.630 0.00 0.00 34.08 2.57
97 98 8.902540 TGGTGGTAAATCATACATACTTGATC 57.097 34.615 0.00 0.00 31.48 2.92
98 99 8.713971 TGGTGGTAAATCATACATACTTGATCT 58.286 33.333 0.00 0.00 31.48 2.75
99 100 9.561069 GGTGGTAAATCATACATACTTGATCTT 57.439 33.333 0.00 0.00 31.48 2.40
101 102 9.476202 TGGTAAATCATACATACTTGATCTTCG 57.524 33.333 0.00 0.00 31.48 3.79
102 103 9.477484 GGTAAATCATACATACTTGATCTTCGT 57.523 33.333 0.00 0.00 31.48 3.85
104 105 7.413475 AATCATACATACTTGATCTTCGTGC 57.587 36.000 0.00 0.00 31.48 5.34
105 106 5.901552 TCATACATACTTGATCTTCGTGCA 58.098 37.500 0.00 0.00 0.00 4.57
106 107 6.515832 TCATACATACTTGATCTTCGTGCAT 58.484 36.000 0.00 0.00 0.00 3.96
107 108 7.657336 TCATACATACTTGATCTTCGTGCATA 58.343 34.615 0.00 0.00 0.00 3.14
108 109 8.141268 TCATACATACTTGATCTTCGTGCATAA 58.859 33.333 0.00 0.00 0.00 1.90
109 110 8.764287 CATACATACTTGATCTTCGTGCATAAA 58.236 33.333 0.00 0.00 0.00 1.40
110 111 7.609760 ACATACTTGATCTTCGTGCATAAAA 57.390 32.000 0.00 0.00 0.00 1.52
111 112 8.039603 ACATACTTGATCTTCGTGCATAAAAA 57.960 30.769 0.00 0.00 0.00 1.94
112 113 8.677300 ACATACTTGATCTTCGTGCATAAAAAT 58.323 29.630 0.00 0.00 0.00 1.82
113 114 9.507280 CATACTTGATCTTCGTGCATAAAAATT 57.493 29.630 0.00 0.00 0.00 1.82
114 115 9.722056 ATACTTGATCTTCGTGCATAAAAATTC 57.278 29.630 0.00 0.00 0.00 2.17
115 116 7.820648 ACTTGATCTTCGTGCATAAAAATTCT 58.179 30.769 0.00 0.00 0.00 2.40
116 117 7.965107 ACTTGATCTTCGTGCATAAAAATTCTC 59.035 33.333 0.00 0.00 0.00 2.87
117 118 6.785191 TGATCTTCGTGCATAAAAATTCTCC 58.215 36.000 0.00 0.00 0.00 3.71
118 119 6.374053 TGATCTTCGTGCATAAAAATTCTCCA 59.626 34.615 0.00 0.00 0.00 3.86
119 120 5.938322 TCTTCGTGCATAAAAATTCTCCAC 58.062 37.500 0.00 0.00 0.00 4.02
120 121 4.695217 TCGTGCATAAAAATTCTCCACC 57.305 40.909 0.00 0.00 0.00 4.61
121 122 4.075682 TCGTGCATAAAAATTCTCCACCA 58.924 39.130 0.00 0.00 0.00 4.17
122 123 4.520874 TCGTGCATAAAAATTCTCCACCAA 59.479 37.500 0.00 0.00 0.00 3.67
123 124 5.010112 TCGTGCATAAAAATTCTCCACCAAA 59.990 36.000 0.00 0.00 0.00 3.28
124 125 5.868801 CGTGCATAAAAATTCTCCACCAAAT 59.131 36.000 0.00 0.00 0.00 2.32
125 126 7.032580 CGTGCATAAAAATTCTCCACCAAATA 58.967 34.615 0.00 0.00 0.00 1.40
126 127 7.706179 CGTGCATAAAAATTCTCCACCAAATAT 59.294 33.333 0.00 0.00 0.00 1.28
127 128 9.382275 GTGCATAAAAATTCTCCACCAAATATT 57.618 29.630 0.00 0.00 0.00 1.28
137 138 8.798975 TTCTCCACCAAATATTAGTAGGATCT 57.201 34.615 0.00 0.00 0.00 2.75
138 139 8.195165 TCTCCACCAAATATTAGTAGGATCTG 57.805 38.462 0.00 0.00 0.00 2.90
139 140 7.789831 TCTCCACCAAATATTAGTAGGATCTGT 59.210 37.037 0.00 0.00 0.00 3.41
140 141 7.963532 TCCACCAAATATTAGTAGGATCTGTC 58.036 38.462 0.00 0.00 0.00 3.51
141 142 7.567250 TCCACCAAATATTAGTAGGATCTGTCA 59.433 37.037 0.00 0.00 0.00 3.58
142 143 7.875041 CCACCAAATATTAGTAGGATCTGTCAG 59.125 40.741 0.00 0.00 0.00 3.51
143 144 8.642432 CACCAAATATTAGTAGGATCTGTCAGA 58.358 37.037 4.68 4.68 0.00 3.27
144 145 9.386122 ACCAAATATTAGTAGGATCTGTCAGAT 57.614 33.333 15.40 15.40 37.73 2.90
150 151 7.767250 TTAGTAGGATCTGTCAGATATGTGG 57.233 40.000 15.44 0.00 34.53 4.17
151 152 5.710646 AGTAGGATCTGTCAGATATGTGGT 58.289 41.667 15.44 0.00 34.53 4.16
152 153 5.772672 AGTAGGATCTGTCAGATATGTGGTC 59.227 44.000 15.44 2.26 34.53 4.02
153 154 4.550669 AGGATCTGTCAGATATGTGGTCA 58.449 43.478 15.44 0.09 34.53 4.02
154 155 4.343526 AGGATCTGTCAGATATGTGGTCAC 59.656 45.833 15.44 0.05 34.53 3.67
155 156 4.502259 GGATCTGTCAGATATGTGGTCACC 60.502 50.000 15.44 5.61 34.53 4.02
156 157 2.427095 TCTGTCAGATATGTGGTCACCG 59.573 50.000 0.00 0.00 0.00 4.94
157 158 2.427095 CTGTCAGATATGTGGTCACCGA 59.573 50.000 0.00 0.00 0.00 4.69
158 159 2.427095 TGTCAGATATGTGGTCACCGAG 59.573 50.000 0.00 0.00 0.00 4.63
159 160 2.031870 TCAGATATGTGGTCACCGAGG 58.968 52.381 0.00 0.00 0.00 4.63
160 161 1.069204 CAGATATGTGGTCACCGAGGG 59.931 57.143 0.00 0.00 0.00 4.30
161 162 0.249911 GATATGTGGTCACCGAGGGC 60.250 60.000 0.00 0.00 0.00 5.19
162 163 0.980754 ATATGTGGTCACCGAGGGCA 60.981 55.000 0.00 0.00 0.00 5.36
163 164 1.613317 TATGTGGTCACCGAGGGCAG 61.613 60.000 0.00 0.00 0.00 4.85
167 168 4.373116 GTCACCGAGGGCAGCGAA 62.373 66.667 0.00 0.00 0.00 4.70
168 169 4.373116 TCACCGAGGGCAGCGAAC 62.373 66.667 0.00 0.00 0.00 3.95
173 174 3.423154 GAGGGCAGCGAACCGTTG 61.423 66.667 0.00 0.00 40.80 4.10
176 177 3.423154 GGCAGCGAACCGTTGGAG 61.423 66.667 5.46 0.00 38.44 3.86
177 178 2.357034 GCAGCGAACCGTTGGAGA 60.357 61.111 5.46 0.00 38.44 3.71
178 179 1.741770 GCAGCGAACCGTTGGAGAT 60.742 57.895 5.46 0.00 38.44 2.75
179 180 1.298859 GCAGCGAACCGTTGGAGATT 61.299 55.000 5.46 0.00 38.44 2.40
180 181 0.443869 CAGCGAACCGTTGGAGATTG 59.556 55.000 0.00 0.00 34.62 2.67
181 182 0.034896 AGCGAACCGTTGGAGATTGT 59.965 50.000 0.00 0.00 0.00 2.71
182 183 1.274167 AGCGAACCGTTGGAGATTGTA 59.726 47.619 0.00 0.00 0.00 2.41
183 184 2.093658 AGCGAACCGTTGGAGATTGTAT 60.094 45.455 0.00 0.00 0.00 2.29
184 185 2.030457 GCGAACCGTTGGAGATTGTATG 59.970 50.000 0.00 0.00 0.00 2.39
185 186 3.517602 CGAACCGTTGGAGATTGTATGA 58.482 45.455 0.00 0.00 0.00 2.15
186 187 4.119862 CGAACCGTTGGAGATTGTATGAT 58.880 43.478 0.00 0.00 0.00 2.45
187 188 4.570772 CGAACCGTTGGAGATTGTATGATT 59.429 41.667 0.00 0.00 0.00 2.57
188 189 5.276868 CGAACCGTTGGAGATTGTATGATTC 60.277 44.000 0.00 0.00 0.00 2.52
189 190 5.359194 ACCGTTGGAGATTGTATGATTCT 57.641 39.130 0.00 0.00 0.00 2.40
190 191 5.745227 ACCGTTGGAGATTGTATGATTCTT 58.255 37.500 0.00 0.00 0.00 2.52
191 192 5.817816 ACCGTTGGAGATTGTATGATTCTTC 59.182 40.000 0.00 0.00 0.00 2.87
192 193 6.051717 CCGTTGGAGATTGTATGATTCTTCT 58.948 40.000 0.00 0.00 0.00 2.85
193 194 7.147724 ACCGTTGGAGATTGTATGATTCTTCTA 60.148 37.037 0.00 0.00 0.00 2.10
194 195 7.710907 CCGTTGGAGATTGTATGATTCTTCTAA 59.289 37.037 0.00 0.00 0.00 2.10
195 196 9.098355 CGTTGGAGATTGTATGATTCTTCTAAA 57.902 33.333 0.00 0.00 0.00 1.85
204 205 8.722480 TGTATGATTCTTCTAAAGATGTGTGG 57.278 34.615 0.00 0.00 37.38 4.17
205 206 8.539544 TGTATGATTCTTCTAAAGATGTGTGGA 58.460 33.333 0.00 0.00 37.38 4.02
206 207 7.856145 ATGATTCTTCTAAAGATGTGTGGAC 57.144 36.000 0.00 0.00 37.38 4.02
207 208 6.768483 TGATTCTTCTAAAGATGTGTGGACA 58.232 36.000 0.00 0.00 37.38 4.02
208 209 7.397221 TGATTCTTCTAAAGATGTGTGGACAT 58.603 34.615 0.00 0.00 46.01 3.06
209 210 7.335171 TGATTCTTCTAAAGATGTGTGGACATG 59.665 37.037 0.00 0.00 43.22 3.21
210 211 6.114187 TCTTCTAAAGATGTGTGGACATGT 57.886 37.500 0.00 0.00 43.22 3.21
211 212 6.166279 TCTTCTAAAGATGTGTGGACATGTC 58.834 40.000 17.91 17.91 43.22 3.06
212 213 4.494484 TCTAAAGATGTGTGGACATGTCG 58.506 43.478 19.33 1.27 43.22 4.35
213 214 3.401033 AAAGATGTGTGGACATGTCGA 57.599 42.857 19.33 13.33 43.22 4.20
214 215 2.662006 AGATGTGTGGACATGTCGAG 57.338 50.000 19.33 0.00 43.22 4.04
215 216 2.171003 AGATGTGTGGACATGTCGAGA 58.829 47.619 19.33 11.71 43.22 4.04
216 217 2.762887 AGATGTGTGGACATGTCGAGAT 59.237 45.455 19.33 9.67 43.22 2.75
217 218 3.954258 AGATGTGTGGACATGTCGAGATA 59.046 43.478 19.33 12.88 43.22 1.98
218 219 3.503827 TGTGTGGACATGTCGAGATAC 57.496 47.619 19.33 14.28 0.00 2.24
219 220 2.823154 TGTGTGGACATGTCGAGATACA 59.177 45.455 19.33 16.38 0.00 2.29
220 221 3.119495 TGTGTGGACATGTCGAGATACAG 60.119 47.826 19.33 0.00 31.70 2.74
221 222 3.128764 GTGTGGACATGTCGAGATACAGA 59.871 47.826 19.33 6.53 31.70 3.41
222 223 3.378427 TGTGGACATGTCGAGATACAGAG 59.622 47.826 19.33 0.00 31.70 3.35
223 224 3.628032 GTGGACATGTCGAGATACAGAGA 59.372 47.826 19.33 0.00 31.70 3.10
224 225 4.096532 GTGGACATGTCGAGATACAGAGAA 59.903 45.833 19.33 0.00 31.70 2.87
225 226 4.705023 TGGACATGTCGAGATACAGAGAAA 59.295 41.667 19.33 0.00 31.70 2.52
226 227 5.038033 GGACATGTCGAGATACAGAGAAAC 58.962 45.833 19.33 0.00 31.70 2.78
227 228 5.393135 GGACATGTCGAGATACAGAGAAACA 60.393 44.000 19.33 0.00 31.70 2.83
228 229 6.025749 ACATGTCGAGATACAGAGAAACAA 57.974 37.500 0.00 0.00 31.70 2.83
229 230 6.096036 ACATGTCGAGATACAGAGAAACAAG 58.904 40.000 0.00 0.00 31.70 3.16
230 231 5.060662 TGTCGAGATACAGAGAAACAAGG 57.939 43.478 0.00 0.00 0.00 3.61
231 232 4.523173 TGTCGAGATACAGAGAAACAAGGT 59.477 41.667 0.00 0.00 0.00 3.50
232 233 5.010719 TGTCGAGATACAGAGAAACAAGGTT 59.989 40.000 0.00 0.00 0.00 3.50
233 234 6.208007 TGTCGAGATACAGAGAAACAAGGTTA 59.792 38.462 0.00 0.00 0.00 2.85
234 235 6.748198 GTCGAGATACAGAGAAACAAGGTTAG 59.252 42.308 0.00 0.00 0.00 2.34
235 236 6.433404 TCGAGATACAGAGAAACAAGGTTAGT 59.567 38.462 0.00 0.00 0.00 2.24
236 237 6.748198 CGAGATACAGAGAAACAAGGTTAGTC 59.252 42.308 0.00 0.00 0.00 2.59
237 238 6.622549 AGATACAGAGAAACAAGGTTAGTCG 58.377 40.000 0.00 0.00 0.00 4.18
238 239 3.391049 ACAGAGAAACAAGGTTAGTCGC 58.609 45.455 0.00 0.00 0.00 5.19
239 240 2.737252 CAGAGAAACAAGGTTAGTCGCC 59.263 50.000 0.00 0.00 0.00 5.54
240 241 2.367567 AGAGAAACAAGGTTAGTCGCCA 59.632 45.455 0.00 0.00 0.00 5.69
241 242 3.008049 AGAGAAACAAGGTTAGTCGCCAT 59.992 43.478 0.00 0.00 0.00 4.40
242 243 3.751518 AGAAACAAGGTTAGTCGCCATT 58.248 40.909 0.00 0.00 0.00 3.16
243 244 4.901868 AGAAACAAGGTTAGTCGCCATTA 58.098 39.130 0.00 0.00 0.00 1.90
244 245 5.310451 AGAAACAAGGTTAGTCGCCATTAA 58.690 37.500 0.00 0.00 0.00 1.40
245 246 5.766174 AGAAACAAGGTTAGTCGCCATTAAA 59.234 36.000 0.00 0.00 0.00 1.52
246 247 5.366829 AACAAGGTTAGTCGCCATTAAAC 57.633 39.130 0.00 0.00 0.00 2.01
247 248 3.434299 ACAAGGTTAGTCGCCATTAAACG 59.566 43.478 0.00 0.00 0.00 3.60
248 249 2.624636 AGGTTAGTCGCCATTAAACGG 58.375 47.619 0.00 0.00 0.00 4.44
249 250 2.027837 AGGTTAGTCGCCATTAAACGGT 60.028 45.455 0.00 0.00 0.00 4.83
250 251 2.094734 GGTTAGTCGCCATTAAACGGTG 59.905 50.000 2.20 2.20 35.24 4.94
251 252 2.995258 GTTAGTCGCCATTAAACGGTGA 59.005 45.455 6.47 6.47 40.71 4.02
252 253 2.172851 AGTCGCCATTAAACGGTGAA 57.827 45.000 11.06 0.00 44.36 3.18
253 254 1.802365 AGTCGCCATTAAACGGTGAAC 59.198 47.619 11.06 7.03 44.36 3.18
254 255 1.532007 GTCGCCATTAAACGGTGAACA 59.468 47.619 11.06 0.00 44.36 3.18
255 256 2.031857 GTCGCCATTAAACGGTGAACAA 60.032 45.455 11.06 0.00 44.36 2.83
256 257 2.617308 TCGCCATTAAACGGTGAACAAA 59.383 40.909 7.82 0.00 40.05 2.83
257 258 2.722116 CGCCATTAAACGGTGAACAAAC 59.278 45.455 2.41 0.00 36.02 2.93
258 259 3.054166 GCCATTAAACGGTGAACAAACC 58.946 45.455 0.00 0.00 36.82 3.27
259 260 3.243602 GCCATTAAACGGTGAACAAACCT 60.244 43.478 0.00 0.00 38.14 3.50
260 261 4.023021 GCCATTAAACGGTGAACAAACCTA 60.023 41.667 0.00 0.00 38.14 3.08
261 262 5.454520 CCATTAAACGGTGAACAAACCTAC 58.545 41.667 0.00 0.00 38.14 3.18
262 263 4.792528 TTAAACGGTGAACAAACCTACG 57.207 40.909 0.00 0.00 38.14 3.51
263 264 0.939419 AACGGTGAACAAACCTACGC 59.061 50.000 0.00 0.00 38.14 4.42
264 265 0.179078 ACGGTGAACAAACCTACGCA 60.179 50.000 0.00 0.00 38.14 5.24
265 266 0.233848 CGGTGAACAAACCTACGCAC 59.766 55.000 0.00 0.00 38.14 5.34
266 267 1.301423 GGTGAACAAACCTACGCACA 58.699 50.000 0.00 0.00 37.24 4.57
267 268 1.671845 GGTGAACAAACCTACGCACAA 59.328 47.619 0.00 0.00 37.24 3.33
268 269 2.292292 GGTGAACAAACCTACGCACAAT 59.708 45.455 0.00 0.00 37.24 2.71
269 270 3.243267 GGTGAACAAACCTACGCACAATT 60.243 43.478 0.00 0.00 37.24 2.32
270 271 4.356289 GTGAACAAACCTACGCACAATTT 58.644 39.130 0.00 0.00 0.00 1.82
271 272 4.801516 GTGAACAAACCTACGCACAATTTT 59.198 37.500 0.00 0.00 0.00 1.82
272 273 5.289917 GTGAACAAACCTACGCACAATTTTT 59.710 36.000 0.00 0.00 0.00 1.94
298 299 4.717991 TGTGAATTACGCACAATACTTGC 58.282 39.130 0.00 0.00 42.75 4.01
299 300 4.214332 TGTGAATTACGCACAATACTTGCA 59.786 37.500 0.00 0.00 42.75 4.08
300 301 5.150683 GTGAATTACGCACAATACTTGCAA 58.849 37.500 0.00 0.00 40.20 4.08
301 302 5.283717 GTGAATTACGCACAATACTTGCAAG 59.716 40.000 24.84 24.84 40.20 4.01
302 303 5.049060 TGAATTACGCACAATACTTGCAAGT 60.049 36.000 32.97 32.97 40.20 3.16
303 304 4.822036 TTACGCACAATACTTGCAAGTT 57.178 36.364 35.20 20.35 40.20 2.66
304 305 3.708563 ACGCACAATACTTGCAAGTTT 57.291 38.095 35.20 25.35 40.20 2.66
305 306 4.822036 ACGCACAATACTTGCAAGTTTA 57.178 36.364 35.20 20.25 40.20 2.01
306 307 5.176407 ACGCACAATACTTGCAAGTTTAA 57.824 34.783 35.20 19.49 40.20 1.52
307 308 5.583495 ACGCACAATACTTGCAAGTTTAAA 58.417 33.333 35.20 19.12 40.20 1.52
308 309 6.037098 ACGCACAATACTTGCAAGTTTAAAA 58.963 32.000 35.20 18.73 40.20 1.52
309 310 6.020201 ACGCACAATACTTGCAAGTTTAAAAC 60.020 34.615 35.20 19.90 40.20 2.43
310 311 6.198216 CGCACAATACTTGCAAGTTTAAAACT 59.802 34.615 35.20 12.02 40.20 2.66
311 312 7.377397 CGCACAATACTTGCAAGTTTAAAACTA 59.623 33.333 35.20 16.49 38.86 2.24
312 313 9.026074 GCACAATACTTGCAAGTTTAAAACTAA 57.974 29.630 35.20 15.76 41.91 2.24
316 317 9.678941 AATACTTGCAAGTTTAAAACTAAGAGC 57.321 29.630 35.20 0.00 41.91 4.09
317 318 7.095695 ACTTGCAAGTTTAAAACTAAGAGCA 57.904 32.000 26.36 0.00 41.91 4.26
318 319 7.543756 ACTTGCAAGTTTAAAACTAAGAGCAA 58.456 30.769 26.36 3.05 41.91 3.91
319 320 8.197439 ACTTGCAAGTTTAAAACTAAGAGCAAT 58.803 29.630 26.36 0.00 41.91 3.56
320 321 8.940768 TTGCAAGTTTAAAACTAAGAGCAATT 57.059 26.923 0.00 0.00 41.91 2.32
321 322 8.574196 TGCAAGTTTAAAACTAAGAGCAATTC 57.426 30.769 0.00 0.00 41.91 2.17
322 323 8.413229 TGCAAGTTTAAAACTAAGAGCAATTCT 58.587 29.630 0.00 0.00 41.91 2.40
331 332 9.905171 AAAACTAAGAGCAATTCTTGAAGATTC 57.095 29.630 0.00 0.00 45.66 2.52
332 333 8.860780 AACTAAGAGCAATTCTTGAAGATTCT 57.139 30.769 0.00 0.00 45.66 2.40
333 334 8.860780 ACTAAGAGCAATTCTTGAAGATTCTT 57.139 30.769 0.00 0.00 45.66 2.52
334 335 9.294614 ACTAAGAGCAATTCTTGAAGATTCTTT 57.705 29.630 0.00 0.00 45.66 2.52
336 337 8.813643 AAGAGCAATTCTTGAAGATTCTTTTG 57.186 30.769 0.00 1.64 44.46 2.44
337 338 7.949434 AGAGCAATTCTTGAAGATTCTTTTGT 58.051 30.769 0.00 0.00 29.61 2.83
338 339 9.071276 AGAGCAATTCTTGAAGATTCTTTTGTA 57.929 29.630 0.00 0.00 29.61 2.41
339 340 9.852091 GAGCAATTCTTGAAGATTCTTTTGTAT 57.148 29.630 0.00 0.00 0.00 2.29
340 341 9.635520 AGCAATTCTTGAAGATTCTTTTGTATG 57.364 29.630 0.00 0.00 0.00 2.39
341 342 8.378421 GCAATTCTTGAAGATTCTTTTGTATGC 58.622 33.333 0.00 3.30 0.00 3.14
342 343 8.581263 CAATTCTTGAAGATTCTTTTGTATGCG 58.419 33.333 0.00 0.00 0.00 4.73
343 344 6.801539 TCTTGAAGATTCTTTTGTATGCGT 57.198 33.333 0.00 0.00 0.00 5.24
344 345 6.831769 TCTTGAAGATTCTTTTGTATGCGTC 58.168 36.000 0.00 0.00 0.00 5.19
345 346 5.545658 TGAAGATTCTTTTGTATGCGTCC 57.454 39.130 0.00 0.00 0.00 4.79
346 347 5.000591 TGAAGATTCTTTTGTATGCGTCCA 58.999 37.500 0.00 0.00 0.00 4.02
347 348 5.471797 TGAAGATTCTTTTGTATGCGTCCAA 59.528 36.000 0.00 0.00 0.00 3.53
348 349 6.150976 TGAAGATTCTTTTGTATGCGTCCAAT 59.849 34.615 0.00 0.00 0.00 3.16
349 350 6.124088 AGATTCTTTTGTATGCGTCCAATC 57.876 37.500 0.00 0.00 0.00 2.67
350 351 4.335082 TTCTTTTGTATGCGTCCAATCG 57.665 40.909 0.00 0.00 0.00 3.34
362 363 3.794536 CGTCCAATCGCCATAATAAACG 58.205 45.455 0.00 0.00 0.00 3.60
363 364 3.491639 CGTCCAATCGCCATAATAAACGA 59.508 43.478 0.00 0.00 39.11 3.85
364 365 4.607557 CGTCCAATCGCCATAATAAACGAC 60.608 45.833 0.00 0.00 37.37 4.34
365 366 4.271533 GTCCAATCGCCATAATAAACGACA 59.728 41.667 0.00 0.00 37.37 4.35
366 367 4.271533 TCCAATCGCCATAATAAACGACAC 59.728 41.667 0.00 0.00 37.37 3.67
367 368 4.272504 CCAATCGCCATAATAAACGACACT 59.727 41.667 0.00 0.00 37.37 3.55
368 369 5.464057 CCAATCGCCATAATAAACGACACTA 59.536 40.000 0.00 0.00 37.37 2.74
369 370 6.147164 CCAATCGCCATAATAAACGACACTAT 59.853 38.462 0.00 0.00 37.37 2.12
370 371 7.329962 CCAATCGCCATAATAAACGACACTATA 59.670 37.037 0.00 0.00 37.37 1.31
371 372 8.705134 CAATCGCCATAATAAACGACACTATAA 58.295 33.333 0.00 0.00 37.37 0.98
372 373 7.627585 TCGCCATAATAAACGACACTATAAC 57.372 36.000 0.00 0.00 0.00 1.89
373 374 6.360414 TCGCCATAATAAACGACACTATAACG 59.640 38.462 0.00 0.00 0.00 3.18
374 375 6.360414 CGCCATAATAAACGACACTATAACGA 59.640 38.462 0.00 0.00 0.00 3.85
375 376 7.096518 CGCCATAATAAACGACACTATAACGAA 60.097 37.037 0.00 0.00 0.00 3.85
376 377 8.000435 GCCATAATAAACGACACTATAACGAAC 59.000 37.037 0.00 0.00 0.00 3.95
377 378 9.022915 CCATAATAAACGACACTATAACGAACA 57.977 33.333 0.00 0.00 0.00 3.18
380 381 7.872163 ATAAACGACACTATAACGAACAACA 57.128 32.000 0.00 0.00 0.00 3.33
381 382 5.565723 AACGACACTATAACGAACAACAC 57.434 39.130 0.00 0.00 0.00 3.32
382 383 4.609947 ACGACACTATAACGAACAACACA 58.390 39.130 0.00 0.00 0.00 3.72
383 384 4.678287 ACGACACTATAACGAACAACACAG 59.322 41.667 0.00 0.00 0.00 3.66
384 385 4.913345 CGACACTATAACGAACAACACAGA 59.087 41.667 0.00 0.00 0.00 3.41
385 386 5.400188 CGACACTATAACGAACAACACAGAA 59.600 40.000 0.00 0.00 0.00 3.02
386 387 6.074729 CGACACTATAACGAACAACACAGAAA 60.075 38.462 0.00 0.00 0.00 2.52
387 388 7.515528 CGACACTATAACGAACAACACAGAAAA 60.516 37.037 0.00 0.00 0.00 2.29
388 389 8.149973 ACACTATAACGAACAACACAGAAAAT 57.850 30.769 0.00 0.00 0.00 1.82
389 390 8.067784 ACACTATAACGAACAACACAGAAAATG 58.932 33.333 0.00 0.00 0.00 2.32
390 391 8.279800 CACTATAACGAACAACACAGAAAATGA 58.720 33.333 0.00 0.00 0.00 2.57
391 392 8.280497 ACTATAACGAACAACACAGAAAATGAC 58.720 33.333 0.00 0.00 0.00 3.06
392 393 3.935450 ACGAACAACACAGAAAATGACG 58.065 40.909 0.00 0.00 0.00 4.35
393 394 3.619483 ACGAACAACACAGAAAATGACGA 59.381 39.130 0.00 0.00 0.00 4.20
394 395 4.272504 ACGAACAACACAGAAAATGACGAT 59.727 37.500 0.00 0.00 0.00 3.73
395 396 4.840772 CGAACAACACAGAAAATGACGATC 59.159 41.667 0.00 0.00 0.00 3.69
396 397 4.749245 ACAACACAGAAAATGACGATCC 57.251 40.909 0.00 0.00 0.00 3.36
397 398 4.133820 ACAACACAGAAAATGACGATCCA 58.866 39.130 0.00 0.00 0.00 3.41
398 399 4.761739 ACAACACAGAAAATGACGATCCAT 59.238 37.500 0.00 0.00 0.00 3.41
399 400 5.937540 ACAACACAGAAAATGACGATCCATA 59.062 36.000 0.00 0.00 0.00 2.74
400 401 6.092670 ACAACACAGAAAATGACGATCCATAG 59.907 38.462 0.00 0.00 0.00 2.23
401 402 4.572389 ACACAGAAAATGACGATCCATAGC 59.428 41.667 0.00 0.00 0.00 2.97
402 403 4.024556 CACAGAAAATGACGATCCATAGCC 60.025 45.833 0.00 0.00 0.00 3.93
403 404 3.499918 CAGAAAATGACGATCCATAGCCC 59.500 47.826 0.00 0.00 0.00 5.19
404 405 3.392616 AGAAAATGACGATCCATAGCCCT 59.607 43.478 0.00 0.00 0.00 5.19
405 406 3.864789 AAATGACGATCCATAGCCCTT 57.135 42.857 0.00 0.00 0.00 3.95
406 407 3.864789 AATGACGATCCATAGCCCTTT 57.135 42.857 0.00 0.00 0.00 3.11
407 408 3.864789 ATGACGATCCATAGCCCTTTT 57.135 42.857 0.00 0.00 0.00 2.27
408 409 3.644966 TGACGATCCATAGCCCTTTTT 57.355 42.857 0.00 0.00 0.00 1.94
437 438 2.109425 TTTTAGGAAGAGCCGGAAGC 57.891 50.000 5.05 0.00 43.43 3.86
446 447 4.593864 GCCGGAAGCTAGCGAGGG 62.594 72.222 5.05 10.63 38.99 4.30
447 448 2.833582 CCGGAAGCTAGCGAGGGA 60.834 66.667 9.55 0.00 0.00 4.20
448 449 2.423898 CCGGAAGCTAGCGAGGGAA 61.424 63.158 9.55 0.00 0.00 3.97
449 450 1.227002 CGGAAGCTAGCGAGGGAAC 60.227 63.158 9.55 0.00 0.00 3.62
450 451 1.898154 GGAAGCTAGCGAGGGAACA 59.102 57.895 9.55 0.00 0.00 3.18
451 452 0.466124 GGAAGCTAGCGAGGGAACAT 59.534 55.000 9.55 0.00 0.00 2.71
452 453 1.576356 GAAGCTAGCGAGGGAACATG 58.424 55.000 9.55 0.00 0.00 3.21
453 454 0.462759 AAGCTAGCGAGGGAACATGC 60.463 55.000 9.55 0.00 0.00 4.06
454 455 1.889573 GCTAGCGAGGGAACATGCC 60.890 63.158 0.00 0.00 33.69 4.40
463 464 1.893062 GGAACATGCCCAAAGGAGC 59.107 57.895 0.00 0.00 33.47 4.70
464 465 1.508088 GAACATGCCCAAAGGAGCG 59.492 57.895 0.00 0.00 33.47 5.03
465 466 1.937546 GAACATGCCCAAAGGAGCGG 61.938 60.000 0.00 0.00 33.47 5.52
466 467 3.830192 CATGCCCAAAGGAGCGGC 61.830 66.667 0.00 0.00 43.32 6.53
467 468 4.052518 ATGCCCAAAGGAGCGGCT 62.053 61.111 0.00 0.00 43.42 5.52
468 469 4.722700 TGCCCAAAGGAGCGGCTC 62.723 66.667 21.57 21.57 43.42 4.70
477 478 4.273257 GAGCGGCTCCGGCTAGAC 62.273 72.222 19.20 0.00 40.19 2.59
480 481 3.905678 CGGCTCCGGCTAGACCTG 61.906 72.222 0.00 0.00 38.73 4.00
481 482 4.228567 GGCTCCGGCTAGACCTGC 62.229 72.222 0.00 0.00 38.73 4.85
482 483 3.461773 GCTCCGGCTAGACCTGCA 61.462 66.667 0.00 0.00 35.61 4.41
483 484 2.496817 CTCCGGCTAGACCTGCAC 59.503 66.667 0.00 0.00 35.61 4.57
562 640 2.024588 CACCACTGCGTGCACAAC 59.975 61.111 18.64 8.87 31.34 3.32
563 641 3.209097 ACCACTGCGTGCACAACC 61.209 61.111 18.64 4.90 31.34 3.77
564 642 3.208383 CCACTGCGTGCACAACCA 61.208 61.111 18.64 9.51 31.34 3.67
565 643 2.024588 CACTGCGTGCACAACCAC 59.975 61.111 18.64 0.70 0.00 4.16
598 676 2.577593 GGGAACCGGGAAGTCTCG 59.422 66.667 6.32 0.00 40.86 4.04
599 677 2.281295 GGGAACCGGGAAGTCTCGT 61.281 63.158 6.32 0.00 40.86 4.18
600 678 1.080025 GGAACCGGGAAGTCTCGTG 60.080 63.158 6.32 0.00 0.00 4.35
601 679 1.664306 GAACCGGGAAGTCTCGTGT 59.336 57.895 6.32 0.00 0.00 4.49
602 680 0.388263 GAACCGGGAAGTCTCGTGTC 60.388 60.000 6.32 0.00 0.00 3.67
603 681 2.138656 AACCGGGAAGTCTCGTGTCG 62.139 60.000 6.32 0.00 0.00 4.35
604 682 2.504244 CGGGAAGTCTCGTGTCGC 60.504 66.667 0.00 0.00 0.00 5.19
605 683 2.504244 GGGAAGTCTCGTGTCGCG 60.504 66.667 0.00 0.00 43.01 5.87
606 684 2.504244 GGAAGTCTCGTGTCGCGG 60.504 66.667 6.13 0.00 41.72 6.46
607 685 3.173240 GAAGTCTCGTGTCGCGGC 61.173 66.667 2.29 2.29 41.72 6.53
628 706 4.803426 GGAGTCCGTCTGCGCCAG 62.803 72.222 4.18 2.24 36.67 4.85
629 707 4.057428 GAGTCCGTCTGCGCCAGT 62.057 66.667 4.18 0.00 36.67 4.00
630 708 4.363990 AGTCCGTCTGCGCCAGTG 62.364 66.667 4.18 0.38 36.67 3.66
704 790 1.101049 AAAACACACGGCCACCAGAG 61.101 55.000 2.24 0.00 0.00 3.35
1213 1300 3.406682 CGCAGCTTGTTGAATTCCC 57.593 52.632 2.27 0.00 0.00 3.97
1298 1385 8.870075 ATAAATTGTTCCTCTTGCTTTCTAGT 57.130 30.769 0.00 0.00 0.00 2.57
1303 1390 6.827727 TGTTCCTCTTGCTTTCTAGTAAAGT 58.172 36.000 12.98 0.00 0.00 2.66
1690 1777 0.831711 ACTTGGCCGGGCAGAAAAAT 60.832 50.000 30.86 11.02 0.00 1.82
2585 2675 2.991250 CATCCGTGGAATGAGGTCTTT 58.009 47.619 0.00 0.00 0.00 2.52
2773 2864 1.132453 GCTAAAAGGCAACGACCATCC 59.868 52.381 0.00 0.00 46.39 3.51
2910 3001 4.574828 GTCGGTATGTTTGGAATGCTGTAT 59.425 41.667 0.00 0.00 0.00 2.29
3062 3153 7.215789 CAGATGATAACAACTTCTATGAGGCT 58.784 38.462 0.00 0.00 0.00 4.58
3449 3543 4.022242 TGCTGACTTACTCCAGTAGTGAAC 60.022 45.833 0.00 0.00 39.39 3.18
3483 3577 2.554032 GCTCATGTGCCCAATACCATAC 59.446 50.000 8.59 0.00 0.00 2.39
3680 3774 4.371681 AGTATCCATAGGGGCCGATATTT 58.628 43.478 0.00 0.00 36.21 1.40
3695 3789 4.985409 CCGATATTTGGCACTCTAGAGTTC 59.015 45.833 23.01 18.03 40.20 3.01
3699 3793 4.890158 TTTGGCACTCTAGAGTTCATCA 57.110 40.909 23.01 14.66 40.20 3.07
3700 3794 5.426689 TTTGGCACTCTAGAGTTCATCAT 57.573 39.130 23.01 0.00 40.20 2.45
3720 3814 7.552687 TCATCATGTTGACCATTAGTTTAGTCC 59.447 37.037 2.22 0.00 0.00 3.85
3847 3941 3.619483 TGTATGATCGCCACCTTTTAACG 59.381 43.478 0.00 0.00 0.00 3.18
3928 4022 1.065491 TGGGAACGTGATGATCAAGGG 60.065 52.381 12.73 1.13 30.01 3.95
4299 4393 0.884704 TTCCCTGTCGAAAGCAGTGC 60.885 55.000 7.13 7.13 34.76 4.40
4317 4411 1.287442 TGCATGATGGGGAAAGGCTTA 59.713 47.619 0.00 0.00 0.00 3.09
4563 4657 6.989659 GGACAATTTCCATGCATTATCTCAT 58.010 36.000 0.00 0.00 45.10 2.90
4644 4738 8.517062 TGTTGAATCCAAATTGAAATTTTGGT 57.483 26.923 13.27 0.00 36.52 3.67
4851 4945 4.423732 GCATTGCCTGTTAGTTGTTATGG 58.576 43.478 0.00 0.00 0.00 2.74
4878 4972 1.962807 TGTTGGAAGATTGCCACCTTG 59.037 47.619 0.00 0.00 34.56 3.61
4904 4998 2.416747 TCATCACTGGACAAAGAAGCG 58.583 47.619 0.00 0.00 0.00 4.68
5127 5221 0.958822 ATTCTTTGTGTTCGGTGCCC 59.041 50.000 0.00 0.00 0.00 5.36
5179 5273 5.701224 TGTTTTTCTTTGTCCCTCCTATGT 58.299 37.500 0.00 0.00 0.00 2.29
5338 5689 3.782656 ATATTTCTTACCGGGCCGATT 57.217 42.857 30.79 16.72 0.00 3.34
5375 5726 9.847706 GAAATGTTCCCTATCTTTCTTTCTTTC 57.152 33.333 0.00 0.00 0.00 2.62
5389 5782 9.170584 CTTTCTTTCTTTCGAAACTCATTTACC 57.829 33.333 6.47 0.00 35.41 2.85
5393 5786 4.387862 TCTTTCGAAACTCATTTACCTCGC 59.612 41.667 6.47 0.00 0.00 5.03
5444 5837 2.971901 ACCAAATCGGGTCTTTTCCT 57.028 45.000 0.00 0.00 35.96 3.36
5448 5841 3.153919 CAAATCGGGTCTTTTCCTGGAA 58.846 45.455 4.68 4.68 34.81 3.53
5449 5842 2.491675 ATCGGGTCTTTTCCTGGAAC 57.508 50.000 9.04 0.00 34.81 3.62
5450 5843 0.034337 TCGGGTCTTTTCCTGGAACG 59.966 55.000 9.04 8.51 34.81 3.95
5455 5848 2.548480 GGTCTTTTCCTGGAACGAGTTG 59.452 50.000 9.04 0.00 0.00 3.16
5466 5859 2.427506 GAACGAGTTGAAGGCTGGAAT 58.572 47.619 0.00 0.00 0.00 3.01
5585 5978 7.275888 ACATGACAATTACTCACACACAATT 57.724 32.000 0.00 0.00 0.00 2.32
5882 6276 5.362430 AGATCTCCAAAGCCTAAGAGTGTAG 59.638 44.000 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.106944 GGCATACCACGGAATTGGGG 61.107 60.000 0.00 0.00 41.49 4.96
1 2 0.106719 AGGCATACCACGGAATTGGG 60.107 55.000 0.00 0.00 41.49 4.12
4 5 4.157105 GTGTTTTAGGCATACCACGGAATT 59.843 41.667 0.00 0.00 39.06 2.17
6 7 3.075884 GTGTTTTAGGCATACCACGGAA 58.924 45.455 0.00 0.00 39.06 4.30
7 8 2.038689 TGTGTTTTAGGCATACCACGGA 59.961 45.455 0.00 0.00 39.06 4.69
8 9 2.428491 TGTGTTTTAGGCATACCACGG 58.572 47.619 0.00 0.00 39.06 4.94
9 10 4.632251 TGTATGTGTTTTAGGCATACCACG 59.368 41.667 10.25 0.00 42.32 4.94
10 11 6.693315 ATGTATGTGTTTTAGGCATACCAC 57.307 37.500 10.25 0.00 42.32 4.16
11 12 7.570132 AGTATGTATGTGTTTTAGGCATACCA 58.430 34.615 10.25 1.88 42.32 3.25
12 13 7.931948 AGAGTATGTATGTGTTTTAGGCATACC 59.068 37.037 10.25 0.00 42.32 2.73
13 14 8.888579 AGAGTATGTATGTGTTTTAGGCATAC 57.111 34.615 0.00 0.00 42.92 2.39
15 16 9.326413 GTAAGAGTATGTATGTGTTTTAGGCAT 57.674 33.333 0.00 0.00 0.00 4.40
16 17 8.315482 TGTAAGAGTATGTATGTGTTTTAGGCA 58.685 33.333 0.00 0.00 0.00 4.75
17 18 8.712285 TGTAAGAGTATGTATGTGTTTTAGGC 57.288 34.615 0.00 0.00 0.00 3.93
23 24 9.944376 AGTCAAATGTAAGAGTATGTATGTGTT 57.056 29.630 0.00 0.00 0.00 3.32
34 35 8.540388 ACATGGTGTATAGTCAAATGTAAGAGT 58.460 33.333 0.00 0.00 30.41 3.24
35 36 8.948631 ACATGGTGTATAGTCAAATGTAAGAG 57.051 34.615 0.00 0.00 30.41 2.85
36 37 9.378551 GAACATGGTGTATAGTCAAATGTAAGA 57.621 33.333 0.00 0.00 31.30 2.10
37 38 8.612619 GGAACATGGTGTATAGTCAAATGTAAG 58.387 37.037 0.00 0.00 31.30 2.34
38 39 8.325787 AGGAACATGGTGTATAGTCAAATGTAA 58.674 33.333 0.00 0.00 31.30 2.41
39 40 7.857456 AGGAACATGGTGTATAGTCAAATGTA 58.143 34.615 0.00 0.00 31.30 2.29
40 41 6.721318 AGGAACATGGTGTATAGTCAAATGT 58.279 36.000 0.00 0.00 32.18 2.71
41 42 6.823182 TGAGGAACATGGTGTATAGTCAAATG 59.177 38.462 0.00 0.00 0.00 2.32
42 43 6.957631 TGAGGAACATGGTGTATAGTCAAAT 58.042 36.000 0.00 0.00 0.00 2.32
43 44 6.367374 TGAGGAACATGGTGTATAGTCAAA 57.633 37.500 0.00 0.00 0.00 2.69
44 45 6.212589 TCTTGAGGAACATGGTGTATAGTCAA 59.787 38.462 0.00 0.00 0.00 3.18
45 46 5.719563 TCTTGAGGAACATGGTGTATAGTCA 59.280 40.000 0.00 0.00 0.00 3.41
46 47 6.222038 TCTTGAGGAACATGGTGTATAGTC 57.778 41.667 0.00 0.00 0.00 2.59
47 48 6.814954 ATCTTGAGGAACATGGTGTATAGT 57.185 37.500 0.00 0.00 0.00 2.12
48 49 7.012704 CCAAATCTTGAGGAACATGGTGTATAG 59.987 40.741 0.00 0.00 0.00 1.31
49 50 6.828273 CCAAATCTTGAGGAACATGGTGTATA 59.172 38.462 0.00 0.00 0.00 1.47
50 51 5.653769 CCAAATCTTGAGGAACATGGTGTAT 59.346 40.000 0.00 0.00 0.00 2.29
51 52 5.009631 CCAAATCTTGAGGAACATGGTGTA 58.990 41.667 0.00 0.00 0.00 2.90
52 53 3.828451 CCAAATCTTGAGGAACATGGTGT 59.172 43.478 0.00 0.00 0.00 4.16
53 54 3.828451 ACCAAATCTTGAGGAACATGGTG 59.172 43.478 0.00 0.00 37.07 4.17
54 55 3.828451 CACCAAATCTTGAGGAACATGGT 59.172 43.478 0.00 0.00 38.13 3.55
55 56 3.194116 CCACCAAATCTTGAGGAACATGG 59.806 47.826 0.00 0.00 33.80 3.66
56 57 3.828451 ACCACCAAATCTTGAGGAACATG 59.172 43.478 0.00 0.00 32.33 3.21
57 58 4.118168 ACCACCAAATCTTGAGGAACAT 57.882 40.909 5.28 0.00 32.33 2.71
58 59 3.593442 ACCACCAAATCTTGAGGAACA 57.407 42.857 5.28 0.00 32.33 3.18
59 60 6.208599 TGATTTACCACCAAATCTTGAGGAAC 59.791 38.462 9.31 0.00 42.76 3.62
60 61 6.310941 TGATTTACCACCAAATCTTGAGGAA 58.689 36.000 9.31 0.00 42.76 3.36
61 62 5.886609 TGATTTACCACCAAATCTTGAGGA 58.113 37.500 9.31 0.00 42.76 3.71
62 63 6.780457 ATGATTTACCACCAAATCTTGAGG 57.220 37.500 9.31 0.00 42.76 3.86
63 64 8.279970 TGTATGATTTACCACCAAATCTTGAG 57.720 34.615 9.31 0.00 42.76 3.02
64 65 8.821686 ATGTATGATTTACCACCAAATCTTGA 57.178 30.769 9.31 0.00 42.76 3.02
65 66 9.950680 GTATGTATGATTTACCACCAAATCTTG 57.049 33.333 9.31 0.00 42.76 3.02
66 67 9.920946 AGTATGTATGATTTACCACCAAATCTT 57.079 29.630 9.31 6.28 42.76 2.40
67 68 9.920946 AAGTATGTATGATTTACCACCAAATCT 57.079 29.630 9.31 0.35 42.76 2.40
68 69 9.950680 CAAGTATGTATGATTTACCACCAAATC 57.049 33.333 2.38 2.38 42.67 2.17
69 70 9.693739 TCAAGTATGTATGATTTACCACCAAAT 57.306 29.630 0.00 0.00 0.00 2.32
70 71 9.693739 ATCAAGTATGTATGATTTACCACCAAA 57.306 29.630 0.00 0.00 32.47 3.28
71 72 9.337396 GATCAAGTATGTATGATTTACCACCAA 57.663 33.333 0.00 0.00 36.45 3.67
72 73 8.713971 AGATCAAGTATGTATGATTTACCACCA 58.286 33.333 0.00 0.00 36.45 4.17
73 74 9.561069 AAGATCAAGTATGTATGATTTACCACC 57.439 33.333 0.00 0.00 36.45 4.61
75 76 9.476202 CGAAGATCAAGTATGTATGATTTACCA 57.524 33.333 0.00 0.00 36.45 3.25
76 77 9.477484 ACGAAGATCAAGTATGTATGATTTACC 57.523 33.333 0.00 0.00 36.45 2.85
78 79 8.978539 GCACGAAGATCAAGTATGTATGATTTA 58.021 33.333 0.00 0.00 36.45 1.40
79 80 7.495606 TGCACGAAGATCAAGTATGTATGATTT 59.504 33.333 0.00 0.00 36.45 2.17
80 81 6.986231 TGCACGAAGATCAAGTATGTATGATT 59.014 34.615 0.00 0.00 36.45 2.57
81 82 6.515832 TGCACGAAGATCAAGTATGTATGAT 58.484 36.000 0.00 0.00 38.93 2.45
82 83 5.901552 TGCACGAAGATCAAGTATGTATGA 58.098 37.500 0.00 0.00 0.00 2.15
83 84 6.775939 ATGCACGAAGATCAAGTATGTATG 57.224 37.500 0.00 0.00 0.00 2.39
84 85 8.887036 TTTATGCACGAAGATCAAGTATGTAT 57.113 30.769 0.00 0.00 0.00 2.29
85 86 8.710835 TTTTATGCACGAAGATCAAGTATGTA 57.289 30.769 0.00 0.00 0.00 2.29
86 87 7.609760 TTTTATGCACGAAGATCAAGTATGT 57.390 32.000 0.00 0.00 0.00 2.29
87 88 9.507280 AATTTTTATGCACGAAGATCAAGTATG 57.493 29.630 0.00 0.00 0.00 2.39
88 89 9.722056 GAATTTTTATGCACGAAGATCAAGTAT 57.278 29.630 0.00 0.00 0.00 2.12
89 90 8.946085 AGAATTTTTATGCACGAAGATCAAGTA 58.054 29.630 0.00 0.00 0.00 2.24
90 91 7.820648 AGAATTTTTATGCACGAAGATCAAGT 58.179 30.769 0.00 0.00 0.00 3.16
91 92 7.430502 GGAGAATTTTTATGCACGAAGATCAAG 59.569 37.037 0.00 0.00 0.00 3.02
92 93 7.094420 TGGAGAATTTTTATGCACGAAGATCAA 60.094 33.333 0.00 0.00 0.00 2.57
93 94 6.374053 TGGAGAATTTTTATGCACGAAGATCA 59.626 34.615 0.00 0.00 0.00 2.92
94 95 6.688813 GTGGAGAATTTTTATGCACGAAGATC 59.311 38.462 0.00 0.00 0.00 2.75
95 96 6.404734 GGTGGAGAATTTTTATGCACGAAGAT 60.405 38.462 0.00 0.00 36.28 2.40
96 97 5.106317 GGTGGAGAATTTTTATGCACGAAGA 60.106 40.000 0.00 0.00 36.28 2.87
97 98 5.095490 GGTGGAGAATTTTTATGCACGAAG 58.905 41.667 0.00 0.00 36.28 3.79
98 99 4.520874 TGGTGGAGAATTTTTATGCACGAA 59.479 37.500 0.00 0.00 36.28 3.85
99 100 4.075682 TGGTGGAGAATTTTTATGCACGA 58.924 39.130 0.00 0.00 36.28 4.35
100 101 4.433186 TGGTGGAGAATTTTTATGCACG 57.567 40.909 0.00 0.00 36.28 5.34
101 102 8.947055 ATATTTGGTGGAGAATTTTTATGCAC 57.053 30.769 0.00 0.00 34.86 4.57
111 112 9.398921 AGATCCTACTAATATTTGGTGGAGAAT 57.601 33.333 14.42 3.60 29.95 2.40
112 113 8.651389 CAGATCCTACTAATATTTGGTGGAGAA 58.349 37.037 14.42 0.00 29.95 2.87
113 114 7.789831 ACAGATCCTACTAATATTTGGTGGAGA 59.210 37.037 14.42 7.89 29.95 3.71
114 115 7.967908 ACAGATCCTACTAATATTTGGTGGAG 58.032 38.462 14.42 7.42 29.95 3.86
115 116 7.567250 TGACAGATCCTACTAATATTTGGTGGA 59.433 37.037 12.55 12.55 0.00 4.02
116 117 7.735917 TGACAGATCCTACTAATATTTGGTGG 58.264 38.462 0.00 0.00 0.00 4.61
117 118 8.642432 TCTGACAGATCCTACTAATATTTGGTG 58.358 37.037 0.00 0.00 0.00 4.17
118 119 8.783660 TCTGACAGATCCTACTAATATTTGGT 57.216 34.615 0.00 0.00 0.00 3.67
124 125 9.467796 CCACATATCTGACAGATCCTACTAATA 57.532 37.037 21.20 1.29 36.20 0.98
125 126 7.952930 ACCACATATCTGACAGATCCTACTAAT 59.047 37.037 21.20 5.11 36.20 1.73
126 127 7.298374 ACCACATATCTGACAGATCCTACTAA 58.702 38.462 21.20 2.78 36.20 2.24
127 128 6.853490 ACCACATATCTGACAGATCCTACTA 58.147 40.000 21.20 3.53 36.20 1.82
128 129 5.710646 ACCACATATCTGACAGATCCTACT 58.289 41.667 21.20 0.02 36.20 2.57
129 130 5.536538 TGACCACATATCTGACAGATCCTAC 59.463 44.000 21.20 8.54 36.20 3.18
130 131 5.536538 GTGACCACATATCTGACAGATCCTA 59.463 44.000 21.20 5.04 36.20 2.94
131 132 4.343526 GTGACCACATATCTGACAGATCCT 59.656 45.833 21.20 7.82 36.20 3.24
132 133 4.502259 GGTGACCACATATCTGACAGATCC 60.502 50.000 21.20 9.40 36.20 3.36
133 134 4.626042 GGTGACCACATATCTGACAGATC 58.374 47.826 21.20 7.09 36.20 2.75
134 135 3.068732 CGGTGACCACATATCTGACAGAT 59.931 47.826 21.31 21.31 38.70 2.90
135 136 2.427095 CGGTGACCACATATCTGACAGA 59.573 50.000 7.80 7.80 0.00 3.41
136 137 2.427095 TCGGTGACCACATATCTGACAG 59.573 50.000 1.11 0.00 0.00 3.51
137 138 2.427095 CTCGGTGACCACATATCTGACA 59.573 50.000 1.11 0.00 0.00 3.58
138 139 2.223829 CCTCGGTGACCACATATCTGAC 60.224 54.545 1.11 0.00 0.00 3.51
139 140 2.031870 CCTCGGTGACCACATATCTGA 58.968 52.381 1.11 0.00 0.00 3.27
140 141 1.069204 CCCTCGGTGACCACATATCTG 59.931 57.143 1.11 0.00 0.00 2.90
141 142 1.414158 CCCTCGGTGACCACATATCT 58.586 55.000 1.11 0.00 0.00 1.98
142 143 0.249911 GCCCTCGGTGACCACATATC 60.250 60.000 1.11 0.00 0.00 1.63
143 144 0.980754 TGCCCTCGGTGACCACATAT 60.981 55.000 1.11 0.00 0.00 1.78
144 145 1.610967 TGCCCTCGGTGACCACATA 60.611 57.895 1.11 0.00 0.00 2.29
145 146 2.927856 TGCCCTCGGTGACCACAT 60.928 61.111 1.11 0.00 0.00 3.21
146 147 3.625897 CTGCCCTCGGTGACCACA 61.626 66.667 1.11 0.00 0.00 4.17
150 151 4.373116 TTCGCTGCCCTCGGTGAC 62.373 66.667 0.00 0.00 37.79 3.67
151 152 4.373116 GTTCGCTGCCCTCGGTGA 62.373 66.667 0.00 0.00 36.39 4.02
156 157 3.423154 CAACGGTTCGCTGCCCTC 61.423 66.667 0.00 0.00 0.00 4.30
159 160 3.423154 CTCCAACGGTTCGCTGCC 61.423 66.667 0.00 0.00 0.00 4.85
160 161 1.298859 AATCTCCAACGGTTCGCTGC 61.299 55.000 0.00 0.00 0.00 5.25
161 162 0.443869 CAATCTCCAACGGTTCGCTG 59.556 55.000 0.00 0.00 0.00 5.18
162 163 0.034896 ACAATCTCCAACGGTTCGCT 59.965 50.000 0.00 0.00 0.00 4.93
163 164 1.717194 TACAATCTCCAACGGTTCGC 58.283 50.000 0.00 0.00 0.00 4.70
164 165 3.517602 TCATACAATCTCCAACGGTTCG 58.482 45.455 0.00 0.00 0.00 3.95
165 166 5.817816 AGAATCATACAATCTCCAACGGTTC 59.182 40.000 0.00 0.00 0.00 3.62
166 167 5.745227 AGAATCATACAATCTCCAACGGTT 58.255 37.500 0.00 0.00 0.00 4.44
167 168 5.359194 AGAATCATACAATCTCCAACGGT 57.641 39.130 0.00 0.00 0.00 4.83
168 169 6.051717 AGAAGAATCATACAATCTCCAACGG 58.948 40.000 0.00 0.00 0.00 4.44
169 170 8.648557 TTAGAAGAATCATACAATCTCCAACG 57.351 34.615 0.00 0.00 0.00 4.10
178 179 9.166173 CCACACATCTTTAGAAGAATCATACAA 57.834 33.333 0.00 0.00 41.63 2.41
179 180 8.539544 TCCACACATCTTTAGAAGAATCATACA 58.460 33.333 0.00 0.00 41.63 2.29
180 181 8.821894 GTCCACACATCTTTAGAAGAATCATAC 58.178 37.037 0.00 0.00 41.63 2.39
181 182 8.539544 TGTCCACACATCTTTAGAAGAATCATA 58.460 33.333 0.00 0.00 41.63 2.15
182 183 7.397221 TGTCCACACATCTTTAGAAGAATCAT 58.603 34.615 0.00 0.00 41.63 2.45
183 184 6.768483 TGTCCACACATCTTTAGAAGAATCA 58.232 36.000 0.00 0.00 41.63 2.57
184 185 7.335422 ACATGTCCACACATCTTTAGAAGAATC 59.665 37.037 0.00 0.00 41.69 2.52
185 186 7.170965 ACATGTCCACACATCTTTAGAAGAAT 58.829 34.615 0.00 0.00 41.69 2.40
186 187 6.533730 ACATGTCCACACATCTTTAGAAGAA 58.466 36.000 0.00 0.00 41.69 2.52
187 188 6.114187 ACATGTCCACACATCTTTAGAAGA 57.886 37.500 0.00 0.00 41.69 2.87
188 189 5.062683 CGACATGTCCACACATCTTTAGAAG 59.937 44.000 20.03 0.00 41.69 2.85
189 190 4.929211 CGACATGTCCACACATCTTTAGAA 59.071 41.667 20.03 0.00 41.69 2.10
190 191 4.219725 TCGACATGTCCACACATCTTTAGA 59.780 41.667 20.03 3.89 41.69 2.10
191 192 4.494484 TCGACATGTCCACACATCTTTAG 58.506 43.478 20.03 1.47 41.69 1.85
192 193 4.219725 TCTCGACATGTCCACACATCTTTA 59.780 41.667 20.03 0.00 41.69 1.85
193 194 3.006859 TCTCGACATGTCCACACATCTTT 59.993 43.478 20.03 0.00 41.69 2.52
194 195 2.562738 TCTCGACATGTCCACACATCTT 59.437 45.455 20.03 0.00 41.69 2.40
195 196 2.171003 TCTCGACATGTCCACACATCT 58.829 47.619 20.03 0.00 41.69 2.90
196 197 2.654749 TCTCGACATGTCCACACATC 57.345 50.000 20.03 0.00 41.69 3.06
197 198 3.447229 TGTATCTCGACATGTCCACACAT 59.553 43.478 20.03 7.75 44.72 3.21
198 199 2.823154 TGTATCTCGACATGTCCACACA 59.177 45.455 20.03 13.28 36.78 3.72
199 200 3.128764 TCTGTATCTCGACATGTCCACAC 59.871 47.826 20.03 11.06 0.00 3.82
200 201 3.352648 TCTGTATCTCGACATGTCCACA 58.647 45.455 20.03 13.91 0.00 4.17
201 202 3.628032 TCTCTGTATCTCGACATGTCCAC 59.372 47.826 20.03 10.42 0.00 4.02
202 203 3.886123 TCTCTGTATCTCGACATGTCCA 58.114 45.455 20.03 6.63 0.00 4.02
203 204 4.902443 TTCTCTGTATCTCGACATGTCC 57.098 45.455 20.03 5.48 0.00 4.02
204 205 5.641709 TGTTTCTCTGTATCTCGACATGTC 58.358 41.667 16.21 16.21 0.00 3.06
205 206 5.644977 TGTTTCTCTGTATCTCGACATGT 57.355 39.130 0.00 0.00 0.00 3.21
206 207 5.518128 CCTTGTTTCTCTGTATCTCGACATG 59.482 44.000 0.00 0.00 0.00 3.21
207 208 5.186021 ACCTTGTTTCTCTGTATCTCGACAT 59.814 40.000 0.00 0.00 0.00 3.06
208 209 4.523173 ACCTTGTTTCTCTGTATCTCGACA 59.477 41.667 0.00 0.00 0.00 4.35
209 210 5.061920 ACCTTGTTTCTCTGTATCTCGAC 57.938 43.478 0.00 0.00 0.00 4.20
210 211 5.723672 AACCTTGTTTCTCTGTATCTCGA 57.276 39.130 0.00 0.00 0.00 4.04
211 212 6.622549 ACTAACCTTGTTTCTCTGTATCTCG 58.377 40.000 0.00 0.00 0.00 4.04
212 213 6.748198 CGACTAACCTTGTTTCTCTGTATCTC 59.252 42.308 0.00 0.00 0.00 2.75
213 214 6.622549 CGACTAACCTTGTTTCTCTGTATCT 58.377 40.000 0.00 0.00 0.00 1.98
214 215 5.288952 GCGACTAACCTTGTTTCTCTGTATC 59.711 44.000 0.00 0.00 0.00 2.24
215 216 5.169295 GCGACTAACCTTGTTTCTCTGTAT 58.831 41.667 0.00 0.00 0.00 2.29
216 217 4.553323 GCGACTAACCTTGTTTCTCTGTA 58.447 43.478 0.00 0.00 0.00 2.74
217 218 3.391049 GCGACTAACCTTGTTTCTCTGT 58.609 45.455 0.00 0.00 0.00 3.41
218 219 2.737252 GGCGACTAACCTTGTTTCTCTG 59.263 50.000 0.00 0.00 0.00 3.35
219 220 2.367567 TGGCGACTAACCTTGTTTCTCT 59.632 45.455 0.00 0.00 0.00 3.10
220 221 2.762745 TGGCGACTAACCTTGTTTCTC 58.237 47.619 0.00 0.00 0.00 2.87
221 222 2.922740 TGGCGACTAACCTTGTTTCT 57.077 45.000 0.00 0.00 0.00 2.52
222 223 5.616488 TTAATGGCGACTAACCTTGTTTC 57.384 39.130 0.00 0.00 0.00 2.78
223 224 5.561339 CGTTTAATGGCGACTAACCTTGTTT 60.561 40.000 0.00 0.00 0.00 2.83
224 225 4.083696 CGTTTAATGGCGACTAACCTTGTT 60.084 41.667 0.00 0.00 0.00 2.83
225 226 3.434299 CGTTTAATGGCGACTAACCTTGT 59.566 43.478 0.00 0.00 0.00 3.16
226 227 3.181514 CCGTTTAATGGCGACTAACCTTG 60.182 47.826 0.00 0.00 0.00 3.61
227 228 3.004862 CCGTTTAATGGCGACTAACCTT 58.995 45.455 0.00 0.00 0.00 3.50
228 229 2.027837 ACCGTTTAATGGCGACTAACCT 60.028 45.455 2.65 0.00 0.00 3.50
229 230 2.094734 CACCGTTTAATGGCGACTAACC 59.905 50.000 2.65 0.00 0.00 2.85
230 231 2.995258 TCACCGTTTAATGGCGACTAAC 59.005 45.455 2.65 0.00 0.00 2.34
231 232 3.316071 TCACCGTTTAATGGCGACTAA 57.684 42.857 2.65 0.00 0.00 2.24
232 233 2.995258 GTTCACCGTTTAATGGCGACTA 59.005 45.455 2.65 0.00 0.00 2.59
233 234 1.802365 GTTCACCGTTTAATGGCGACT 59.198 47.619 2.65 0.00 0.00 4.18
234 235 1.532007 TGTTCACCGTTTAATGGCGAC 59.468 47.619 2.65 0.76 0.00 5.19
235 236 1.880271 TGTTCACCGTTTAATGGCGA 58.120 45.000 2.65 0.00 0.00 5.54
236 237 2.690173 TTGTTCACCGTTTAATGGCG 57.310 45.000 2.65 0.00 0.00 5.69
237 238 3.054166 GGTTTGTTCACCGTTTAATGGC 58.946 45.455 2.65 0.00 0.00 4.40
238 239 4.577834 AGGTTTGTTCACCGTTTAATGG 57.422 40.909 0.99 0.99 42.33 3.16
239 240 5.141568 CGTAGGTTTGTTCACCGTTTAATG 58.858 41.667 0.00 0.00 42.33 1.90
240 241 4.319694 GCGTAGGTTTGTTCACCGTTTAAT 60.320 41.667 0.00 0.00 42.33 1.40
241 242 3.002144 GCGTAGGTTTGTTCACCGTTTAA 59.998 43.478 0.00 0.00 42.33 1.52
242 243 2.543430 GCGTAGGTTTGTTCACCGTTTA 59.457 45.455 0.00 0.00 42.33 2.01
243 244 1.331447 GCGTAGGTTTGTTCACCGTTT 59.669 47.619 0.00 0.00 42.33 3.60
244 245 0.939419 GCGTAGGTTTGTTCACCGTT 59.061 50.000 0.00 0.00 42.33 4.44
245 246 0.179078 TGCGTAGGTTTGTTCACCGT 60.179 50.000 0.00 0.00 42.33 4.83
246 247 0.233848 GTGCGTAGGTTTGTTCACCG 59.766 55.000 0.00 0.00 42.33 4.94
247 248 1.301423 TGTGCGTAGGTTTGTTCACC 58.699 50.000 0.00 0.00 37.04 4.02
248 249 3.619233 ATTGTGCGTAGGTTTGTTCAC 57.381 42.857 0.00 0.00 0.00 3.18
249 250 4.640789 AAATTGTGCGTAGGTTTGTTCA 57.359 36.364 0.00 0.00 0.00 3.18
250 251 5.959652 AAAAATTGTGCGTAGGTTTGTTC 57.040 34.783 0.00 0.00 0.00 3.18
284 285 8.104413 AGTTTTAAACTTGCAAGTATTGTGCGT 61.104 33.333 31.31 11.33 43.79 5.24
285 286 6.198216 AGTTTTAAACTTGCAAGTATTGTGCG 59.802 34.615 31.31 3.65 43.79 5.34
286 287 7.463469 AGTTTTAAACTTGCAAGTATTGTGC 57.537 32.000 31.31 19.39 43.79 4.57
290 291 9.678941 GCTCTTAGTTTTAAACTTGCAAGTATT 57.321 29.630 31.31 25.62 42.81 1.89
291 292 8.846211 TGCTCTTAGTTTTAAACTTGCAAGTAT 58.154 29.630 31.31 18.43 42.81 2.12
292 293 8.215926 TGCTCTTAGTTTTAAACTTGCAAGTA 57.784 30.769 31.31 15.19 42.81 2.24
293 294 7.095695 TGCTCTTAGTTTTAAACTTGCAAGT 57.904 32.000 26.36 26.36 42.81 3.16
294 295 7.985634 TTGCTCTTAGTTTTAAACTTGCAAG 57.014 32.000 24.84 24.84 42.81 4.01
295 296 8.940768 AATTGCTCTTAGTTTTAAACTTGCAA 57.059 26.923 25.34 25.34 42.81 4.08
296 297 8.413229 AGAATTGCTCTTAGTTTTAAACTTGCA 58.587 29.630 15.83 16.36 42.81 4.08
297 298 8.803201 AGAATTGCTCTTAGTTTTAAACTTGC 57.197 30.769 15.83 14.34 42.81 4.01
317 318 8.299570 ACGCATACAAAAGAATCTTCAAGAATT 58.700 29.630 0.00 0.00 0.00 2.17
318 319 7.820648 ACGCATACAAAAGAATCTTCAAGAAT 58.179 30.769 0.00 0.00 0.00 2.40
319 320 7.202016 ACGCATACAAAAGAATCTTCAAGAA 57.798 32.000 0.00 0.00 0.00 2.52
320 321 6.128282 GGACGCATACAAAAGAATCTTCAAGA 60.128 38.462 0.00 0.00 0.00 3.02
321 322 6.024049 GGACGCATACAAAAGAATCTTCAAG 58.976 40.000 0.00 0.00 0.00 3.02
322 323 5.471797 TGGACGCATACAAAAGAATCTTCAA 59.528 36.000 0.00 0.00 0.00 2.69
323 324 5.000591 TGGACGCATACAAAAGAATCTTCA 58.999 37.500 0.00 0.00 0.00 3.02
324 325 5.545658 TGGACGCATACAAAAGAATCTTC 57.454 39.130 0.00 0.00 0.00 2.87
325 326 5.957842 TTGGACGCATACAAAAGAATCTT 57.042 34.783 0.00 0.00 0.00 2.40
326 327 5.220662 CGATTGGACGCATACAAAAGAATCT 60.221 40.000 0.00 0.00 30.36 2.40
327 328 4.963953 CGATTGGACGCATACAAAAGAATC 59.036 41.667 0.00 0.00 30.36 2.52
328 329 4.908736 CGATTGGACGCATACAAAAGAAT 58.091 39.130 0.00 0.00 30.36 2.40
329 330 4.335082 CGATTGGACGCATACAAAAGAA 57.665 40.909 0.00 0.00 30.36 2.52
341 342 3.491639 TCGTTTATTATGGCGATTGGACG 59.508 43.478 0.00 0.00 0.00 4.79
342 343 4.271533 TGTCGTTTATTATGGCGATTGGAC 59.728 41.667 0.00 0.00 35.78 4.02
343 344 4.271533 GTGTCGTTTATTATGGCGATTGGA 59.728 41.667 0.00 0.00 35.78 3.53
344 345 4.272504 AGTGTCGTTTATTATGGCGATTGG 59.727 41.667 0.00 0.00 35.78 3.16
345 346 5.403897 AGTGTCGTTTATTATGGCGATTG 57.596 39.130 0.00 0.00 35.78 2.67
346 347 8.706035 GTTATAGTGTCGTTTATTATGGCGATT 58.294 33.333 0.00 0.00 35.78 3.34
347 348 7.061441 CGTTATAGTGTCGTTTATTATGGCGAT 59.939 37.037 0.00 0.00 35.78 4.58
348 349 6.360414 CGTTATAGTGTCGTTTATTATGGCGA 59.640 38.462 0.00 0.00 0.00 5.54
349 350 6.360414 TCGTTATAGTGTCGTTTATTATGGCG 59.640 38.462 0.00 0.00 0.00 5.69
350 351 7.627585 TCGTTATAGTGTCGTTTATTATGGC 57.372 36.000 0.00 0.00 0.00 4.40
351 352 9.022915 TGTTCGTTATAGTGTCGTTTATTATGG 57.977 33.333 0.00 0.00 0.00 2.74
354 355 9.404348 TGTTGTTCGTTATAGTGTCGTTTATTA 57.596 29.630 0.00 0.00 0.00 0.98
355 356 8.216453 GTGTTGTTCGTTATAGTGTCGTTTATT 58.784 33.333 0.00 0.00 0.00 1.40
356 357 7.381948 TGTGTTGTTCGTTATAGTGTCGTTTAT 59.618 33.333 0.00 0.00 0.00 1.40
357 358 6.694844 TGTGTTGTTCGTTATAGTGTCGTTTA 59.305 34.615 0.00 0.00 0.00 2.01
358 359 5.519566 TGTGTTGTTCGTTATAGTGTCGTTT 59.480 36.000 0.00 0.00 0.00 3.60
359 360 5.042593 TGTGTTGTTCGTTATAGTGTCGTT 58.957 37.500 0.00 0.00 0.00 3.85
360 361 4.609947 TGTGTTGTTCGTTATAGTGTCGT 58.390 39.130 0.00 0.00 0.00 4.34
361 362 4.913345 TCTGTGTTGTTCGTTATAGTGTCG 59.087 41.667 0.00 0.00 0.00 4.35
362 363 6.758593 TTCTGTGTTGTTCGTTATAGTGTC 57.241 37.500 0.00 0.00 0.00 3.67
363 364 7.542534 TTTTCTGTGTTGTTCGTTATAGTGT 57.457 32.000 0.00 0.00 0.00 3.55
364 365 8.279800 TCATTTTCTGTGTTGTTCGTTATAGTG 58.720 33.333 0.00 0.00 0.00 2.74
365 366 8.280497 GTCATTTTCTGTGTTGTTCGTTATAGT 58.720 33.333 0.00 0.00 0.00 2.12
366 367 7.474332 CGTCATTTTCTGTGTTGTTCGTTATAG 59.526 37.037 0.00 0.00 0.00 1.31
367 368 7.169476 TCGTCATTTTCTGTGTTGTTCGTTATA 59.831 33.333 0.00 0.00 0.00 0.98
368 369 6.018588 TCGTCATTTTCTGTGTTGTTCGTTAT 60.019 34.615 0.00 0.00 0.00 1.89
369 370 5.291371 TCGTCATTTTCTGTGTTGTTCGTTA 59.709 36.000 0.00 0.00 0.00 3.18
370 371 4.093703 TCGTCATTTTCTGTGTTGTTCGTT 59.906 37.500 0.00 0.00 0.00 3.85
371 372 3.619483 TCGTCATTTTCTGTGTTGTTCGT 59.381 39.130 0.00 0.00 0.00 3.85
372 373 4.190304 TCGTCATTTTCTGTGTTGTTCG 57.810 40.909 0.00 0.00 0.00 3.95
373 374 5.147162 GGATCGTCATTTTCTGTGTTGTTC 58.853 41.667 0.00 0.00 0.00 3.18
374 375 4.578516 TGGATCGTCATTTTCTGTGTTGTT 59.421 37.500 0.00 0.00 0.00 2.83
375 376 4.133820 TGGATCGTCATTTTCTGTGTTGT 58.866 39.130 0.00 0.00 0.00 3.32
376 377 4.747540 TGGATCGTCATTTTCTGTGTTG 57.252 40.909 0.00 0.00 0.00 3.33
377 378 5.065218 GCTATGGATCGTCATTTTCTGTGTT 59.935 40.000 0.00 0.00 0.00 3.32
378 379 4.572389 GCTATGGATCGTCATTTTCTGTGT 59.428 41.667 0.00 0.00 0.00 3.72
379 380 4.024556 GGCTATGGATCGTCATTTTCTGTG 60.025 45.833 0.00 0.00 0.00 3.66
380 381 4.130118 GGCTATGGATCGTCATTTTCTGT 58.870 43.478 0.00 0.00 0.00 3.41
381 382 3.499918 GGGCTATGGATCGTCATTTTCTG 59.500 47.826 0.00 0.00 0.00 3.02
382 383 3.392616 AGGGCTATGGATCGTCATTTTCT 59.607 43.478 0.00 0.00 0.00 2.52
383 384 3.744660 AGGGCTATGGATCGTCATTTTC 58.255 45.455 0.00 0.00 0.00 2.29
384 385 3.864789 AGGGCTATGGATCGTCATTTT 57.135 42.857 0.00 0.00 0.00 1.82
385 386 3.864789 AAGGGCTATGGATCGTCATTT 57.135 42.857 0.00 0.00 0.00 2.32
386 387 3.864789 AAAGGGCTATGGATCGTCATT 57.135 42.857 0.00 0.00 0.00 2.57
387 388 3.864789 AAAAGGGCTATGGATCGTCAT 57.135 42.857 0.00 0.00 0.00 3.06
388 389 3.644966 AAAAAGGGCTATGGATCGTCA 57.355 42.857 0.00 0.00 0.00 4.35
417 418 2.433436 GCTTCCGGCTCTTCCTAAAAA 58.567 47.619 0.00 0.00 38.06 1.94
418 419 2.109425 GCTTCCGGCTCTTCCTAAAA 57.891 50.000 0.00 0.00 38.06 1.52
419 420 3.855159 GCTTCCGGCTCTTCCTAAA 57.145 52.632 0.00 0.00 38.06 1.85
429 430 4.593864 CCCTCGCTAGCTTCCGGC 62.594 72.222 13.93 0.00 42.19 6.13
430 431 2.423898 TTCCCTCGCTAGCTTCCGG 61.424 63.158 13.93 6.89 0.00 5.14
431 432 1.227002 GTTCCCTCGCTAGCTTCCG 60.227 63.158 13.93 0.00 0.00 4.30
432 433 0.466124 ATGTTCCCTCGCTAGCTTCC 59.534 55.000 13.93 0.00 0.00 3.46
433 434 1.576356 CATGTTCCCTCGCTAGCTTC 58.424 55.000 13.93 0.00 0.00 3.86
434 435 0.462759 GCATGTTCCCTCGCTAGCTT 60.463 55.000 13.93 0.00 0.00 3.74
435 436 1.144936 GCATGTTCCCTCGCTAGCT 59.855 57.895 13.93 0.00 0.00 3.32
436 437 1.889573 GGCATGTTCCCTCGCTAGC 60.890 63.158 4.06 4.06 0.00 3.42
437 438 1.227674 GGGCATGTTCCCTCGCTAG 60.228 63.158 1.28 0.00 43.13 3.42
438 439 1.558167 TTGGGCATGTTCCCTCGCTA 61.558 55.000 9.54 0.00 46.67 4.26
439 440 2.424842 TTTGGGCATGTTCCCTCGCT 62.425 55.000 9.54 0.00 46.67 4.93
440 441 1.937546 CTTTGGGCATGTTCCCTCGC 61.938 60.000 9.54 0.00 46.67 5.03
441 442 1.315257 CCTTTGGGCATGTTCCCTCG 61.315 60.000 9.54 0.00 46.67 4.63
442 443 0.039618 TCCTTTGGGCATGTTCCCTC 59.960 55.000 9.54 0.00 46.67 4.30
443 444 0.040204 CTCCTTTGGGCATGTTCCCT 59.960 55.000 9.54 0.00 46.67 4.20
444 445 1.607801 GCTCCTTTGGGCATGTTCCC 61.608 60.000 1.53 1.53 46.73 3.97
445 446 1.893062 GCTCCTTTGGGCATGTTCC 59.107 57.895 0.00 0.00 0.00 3.62
446 447 1.508088 CGCTCCTTTGGGCATGTTC 59.492 57.895 0.00 0.00 0.00 3.18
447 448 1.978617 CCGCTCCTTTGGGCATGTT 60.979 57.895 0.00 0.00 0.00 2.71
448 449 2.361610 CCGCTCCTTTGGGCATGT 60.362 61.111 0.00 0.00 0.00 3.21
449 450 3.830192 GCCGCTCCTTTGGGCATG 61.830 66.667 0.00 0.00 46.13 4.06
460 461 4.273257 GTCTAGCCGGAGCCGCTC 62.273 72.222 12.27 12.27 41.25 5.03
463 464 3.905678 CAGGTCTAGCCGGAGCCG 61.906 72.222 5.05 1.06 43.70 5.52
464 465 4.228567 GCAGGTCTAGCCGGAGCC 62.229 72.222 5.05 0.20 43.70 4.70
465 466 3.461773 TGCAGGTCTAGCCGGAGC 61.462 66.667 5.05 0.00 43.70 4.70
466 467 2.496817 GTGCAGGTCTAGCCGGAG 59.503 66.667 5.05 0.00 43.70 4.63
467 468 3.075005 GGTGCAGGTCTAGCCGGA 61.075 66.667 5.05 0.00 43.70 5.14
468 469 3.077556 AGGTGCAGGTCTAGCCGG 61.078 66.667 0.00 0.00 43.70 6.13
469 470 2.185350 CAGGTGCAGGTCTAGCCG 59.815 66.667 0.00 0.00 43.70 5.52
470 471 2.124942 GCAGGTGCAGGTCTAGCC 60.125 66.667 0.00 0.00 41.59 3.93
574 652 3.323758 TTCCCGGTTCCCATGAGCG 62.324 63.158 0.00 0.00 37.72 5.03
575 653 1.452108 CTTCCCGGTTCCCATGAGC 60.452 63.158 0.00 0.00 0.00 4.26
576 654 0.107654 GACTTCCCGGTTCCCATGAG 60.108 60.000 0.00 0.00 0.00 2.90
577 655 0.546747 AGACTTCCCGGTTCCCATGA 60.547 55.000 0.00 0.00 0.00 3.07
578 656 0.107654 GAGACTTCCCGGTTCCCATG 60.108 60.000 0.00 0.00 0.00 3.66
579 657 1.614241 CGAGACTTCCCGGTTCCCAT 61.614 60.000 0.00 0.00 0.00 4.00
580 658 2.280552 CGAGACTTCCCGGTTCCCA 61.281 63.158 0.00 0.00 0.00 4.37
581 659 2.281295 ACGAGACTTCCCGGTTCCC 61.281 63.158 0.00 0.00 0.00 3.97
582 660 1.080025 CACGAGACTTCCCGGTTCC 60.080 63.158 0.00 0.00 0.00 3.62
583 661 0.388263 GACACGAGACTTCCCGGTTC 60.388 60.000 0.00 0.00 0.00 3.62
584 662 1.664306 GACACGAGACTTCCCGGTT 59.336 57.895 0.00 0.00 0.00 4.44
585 663 2.623915 CGACACGAGACTTCCCGGT 61.624 63.158 0.00 0.00 0.00 5.28
586 664 2.178521 CGACACGAGACTTCCCGG 59.821 66.667 0.00 0.00 0.00 5.73
587 665 2.504244 GCGACACGAGACTTCCCG 60.504 66.667 0.00 0.00 0.00 5.14
624 702 2.655044 GTTTGTGCACGCACTGGC 60.655 61.111 21.76 8.74 46.30 4.85
625 703 1.298563 CTGTTTGTGCACGCACTGG 60.299 57.895 21.76 5.12 46.30 4.00
626 704 1.298563 CCTGTTTGTGCACGCACTG 60.299 57.895 21.76 14.04 46.30 3.66
627 705 1.451207 TCCTGTTTGTGCACGCACT 60.451 52.632 21.76 0.00 46.30 4.40
628 706 1.298339 GTCCTGTTTGTGCACGCAC 60.298 57.895 15.20 15.20 46.33 5.34
629 707 1.436195 GAGTCCTGTTTGTGCACGCA 61.436 55.000 13.13 10.13 0.00 5.24
630 708 1.279840 GAGTCCTGTTTGTGCACGC 59.720 57.895 13.13 5.65 0.00 5.34
631 709 1.151777 ACGAGTCCTGTTTGTGCACG 61.152 55.000 13.13 0.00 0.00 5.34
632 710 0.304705 CACGAGTCCTGTTTGTGCAC 59.695 55.000 10.75 10.75 0.00 4.57
633 711 0.107897 ACACGAGTCCTGTTTGTGCA 60.108 50.000 0.00 0.00 34.01 4.57
634 712 1.525619 GTACACGAGTCCTGTTTGTGC 59.474 52.381 0.00 0.00 34.01 4.57
635 713 1.784856 CGTACACGAGTCCTGTTTGTG 59.215 52.381 0.00 0.00 43.02 3.33
636 714 1.269413 CCGTACACGAGTCCTGTTTGT 60.269 52.381 2.76 0.00 43.02 2.83
637 715 1.415374 CCGTACACGAGTCCTGTTTG 58.585 55.000 2.76 0.00 43.02 2.93
638 716 0.319297 GCCGTACACGAGTCCTGTTT 60.319 55.000 2.76 0.00 43.02 2.83
639 717 1.288127 GCCGTACACGAGTCCTGTT 59.712 57.895 2.76 0.00 43.02 3.16
726 812 3.229697 GGGGGCTTTATGCTTATGAGT 57.770 47.619 0.00 0.00 42.39 3.41
972 1059 2.294791 GGATCCGAGGATATATGGAGCG 59.705 54.545 4.36 0.00 37.77 5.03
1213 1300 6.072673 GGTATAACTTATGCCAATTTCCTCCG 60.073 42.308 10.26 0.00 40.26 4.63
1253 1340 9.915629 AATTTATACTCGGTGTCTATTCTCATC 57.084 33.333 0.00 0.00 0.00 2.92
1298 1385 7.432148 TCAGTTATCTATGGGCTCAACTTTA 57.568 36.000 0.00 0.00 0.00 1.85
1303 1390 7.500227 CAGATTTTCAGTTATCTATGGGCTCAA 59.500 37.037 0.00 0.00 30.20 3.02
1348 1435 0.323360 AGGGCCGTGCAAATGTACAT 60.323 50.000 1.41 1.41 0.00 2.29
1690 1777 3.071312 ACAAGCCATGCAAAAGAATGGAA 59.929 39.130 6.67 0.00 45.29 3.53
1777 1864 4.065088 AGGCACAATATATACTTGGTGCG 58.935 43.478 16.86 0.00 34.43 5.34
1853 1943 4.324135 CCATGCAAATGTACACATTGTTCG 59.676 41.667 19.05 10.66 45.06 3.95
2585 2675 3.513515 GGAAAAATGGGTCCTGTATGCAA 59.486 43.478 0.00 0.00 0.00 4.08
2666 2757 2.109128 CTCCCTGTCTCAGCTCCCTATA 59.891 54.545 0.00 0.00 0.00 1.31
2910 3001 2.749076 CCGAATTCAGAAGAACATGGCA 59.251 45.455 6.22 0.00 36.39 4.92
3062 3153 5.599656 AGCAGGATTGTAACGGGTTATAGTA 59.400 40.000 0.00 0.00 0.00 1.82
3483 3577 0.249398 ATTTCCGAACGGAGGGAGTG 59.751 55.000 15.34 0.00 46.06 3.51
3680 3774 3.771479 ACATGATGAACTCTAGAGTGCCA 59.229 43.478 25.83 23.96 41.58 4.92
3695 3789 7.336679 TGGACTAAACTAATGGTCAACATGATG 59.663 37.037 0.00 0.00 40.44 3.07
3699 3793 6.539173 TGTGGACTAAACTAATGGTCAACAT 58.461 36.000 0.00 0.00 37.61 2.71
3700 3794 5.931294 TGTGGACTAAACTAATGGTCAACA 58.069 37.500 0.00 0.00 39.43 3.33
3720 3814 5.048504 ACAACAAAGCATAAGTCTCCATGTG 60.049 40.000 0.00 0.00 0.00 3.21
4299 4393 3.303351 AGTAAGCCTTTCCCCATCATG 57.697 47.619 0.00 0.00 0.00 3.07
4558 4652 8.827832 ATCACCCTAATTTCAATTGAATGAGA 57.172 30.769 21.10 7.21 33.54 3.27
4580 4674 7.723616 TCAAGGTTCTGGACAAAATTTCTATCA 59.276 33.333 0.00 0.00 0.00 2.15
4851 4945 4.016444 TGGCAATCTTCCAACATACTTCC 58.984 43.478 0.00 0.00 0.00 3.46
4878 4972 2.408271 TTGTCCAGTGATGATCCAGC 57.592 50.000 0.00 0.00 0.00 4.85
4904 4998 4.636206 GGTAGTCCAGTTTTCCATCACATC 59.364 45.833 0.00 0.00 0.00 3.06
5090 5184 8.457261 ACAAAGAATCTTCAGCTGATTTATGTC 58.543 33.333 19.04 10.43 34.67 3.06
5127 5221 1.474077 GGCCAAGGTTAATCAGCTGTG 59.526 52.381 14.67 1.38 31.79 3.66
5338 5689 8.826765 AGATAGGGAACATTTCTTTTCAGAGTA 58.173 33.333 0.00 0.00 0.00 2.59
5375 5726 2.348666 CCAGCGAGGTAAATGAGTTTCG 59.651 50.000 0.00 0.00 0.00 3.46
5393 5786 1.975407 CAAGACCAGCCTTGCCCAG 60.975 63.158 0.00 0.00 37.35 4.45
5442 5835 0.035458 AGCCTTCAACTCGTTCCAGG 59.965 55.000 1.12 1.12 0.00 4.45
5444 5837 0.250295 CCAGCCTTCAACTCGTTCCA 60.250 55.000 0.00 0.00 0.00 3.53
5448 5841 2.568623 AATTCCAGCCTTCAACTCGT 57.431 45.000 0.00 0.00 0.00 4.18
5449 5842 3.923017 AAAATTCCAGCCTTCAACTCG 57.077 42.857 0.00 0.00 0.00 4.18
5535 5928 5.531287 GCTTGTATGGGGTATCCTGTAAAAG 59.469 44.000 0.00 0.00 36.20 2.27
5546 5939 2.112190 TCATGTCGCTTGTATGGGGTA 58.888 47.619 0.00 0.00 0.00 3.69
5585 5978 2.891580 CGCCAAGAAGCTAGGGACTATA 59.108 50.000 0.00 0.00 41.70 1.31
5882 6276 0.318784 ACCTCGTCTTCAAGTGTCGC 60.319 55.000 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.