Multiple sequence alignment - TraesCS5D01G272200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G272200 chr5D 100.000 5480 0 0 1 5480 375411600 375406121 0.000000e+00 10120.0
1 TraesCS5D01G272200 chr5D 90.303 165 16 0 48 212 375440738 375440574 3.320000e-52 217.0
2 TraesCS5D01G272200 chr5B 94.300 1807 85 9 3103 4904 448275398 448273605 0.000000e+00 2750.0
3 TraesCS5D01G272200 chr5B 92.133 661 41 8 1638 2290 448276047 448275390 0.000000e+00 922.0
4 TraesCS5D01G272200 chr5B 89.122 524 47 8 4959 5480 448273612 448273097 1.290000e-180 643.0
5 TraesCS5D01G272200 chr5B 89.216 510 28 8 213 716 448279212 448278724 3.630000e-171 612.0
6 TraesCS5D01G272200 chr5B 78.216 583 115 8 3194 3766 441638775 441638195 4.030000e-96 363.0
7 TraesCS5D01G272200 chr5B 92.157 255 19 1 1051 1305 448277408 448277155 5.220000e-95 359.0
8 TraesCS5D01G272200 chr5B 96.714 213 6 1 1 212 448279464 448279252 2.430000e-93 353.0
9 TraesCS5D01G272200 chr5B 78.879 464 76 19 5026 5477 349062948 349062495 1.490000e-75 294.0
10 TraesCS5D01G272200 chr5B 88.601 193 18 4 2423 2614 230015085 230014896 1.190000e-56 231.0
11 TraesCS5D01G272200 chr5B 90.000 170 12 2 48 212 448297681 448297512 1.200000e-51 215.0
12 TraesCS5D01G272200 chr5B 89.189 148 16 0 4098 4245 450619647 450619500 9.370000e-43 185.0
13 TraesCS5D01G272200 chr5B 81.780 236 17 13 1424 1639 448276322 448276093 2.030000e-39 174.0
14 TraesCS5D01G272200 chr5B 91.818 110 8 1 2291 2400 230015186 230015078 9.510000e-33 152.0
15 TraesCS5D01G272200 chr5B 78.539 219 38 9 2297 2510 89029146 89028932 9.580000e-28 135.0
16 TraesCS5D01G272200 chr5B 88.764 89 7 1 921 1009 448277493 448277408 7.510000e-19 106.0
17 TraesCS5D01G272200 chr5B 89.091 55 6 0 4357 4411 477966651 477966705 9.850000e-08 69.4
18 TraesCS5D01G272200 chr5A 93.021 917 48 5 3933 4848 476691758 476690857 0.000000e+00 1325.0
19 TraesCS5D01G272200 chr5A 95.215 836 38 2 3103 3936 476753266 476752431 0.000000e+00 1321.0
20 TraesCS5D01G272200 chr5A 94.665 656 30 3 1638 2290 476753911 476753258 0.000000e+00 1013.0
21 TraesCS5D01G272200 chr5A 87.032 401 22 7 47 417 476755576 476755176 5.070000e-115 425.0
22 TraesCS5D01G272200 chr5A 78.731 583 112 8 3194 3766 474817463 474816883 4.010000e-101 379.0
23 TraesCS5D01G272200 chr5A 83.673 245 36 3 5237 5480 476689817 476689576 1.540000e-55 228.0
24 TraesCS5D01G272200 chr5A 74.948 483 95 19 5009 5480 456065253 456064786 1.200000e-46 198.0
25 TraesCS5D01G272200 chr5A 89.726 146 15 0 4100 4245 477818677 477818532 2.610000e-43 187.0
26 TraesCS5D01G272200 chr5A 87.333 150 11 4 1280 1424 476754168 476754022 1.220000e-36 165.0
27 TraesCS5D01G272200 chr5A 82.418 182 29 1 4075 4253 677957378 677957559 7.350000e-34 156.0
28 TraesCS5D01G272200 chr5A 84.314 153 24 0 4098 4250 677950961 677951113 3.420000e-32 150.0
29 TraesCS5D01G272200 chr5A 88.235 51 6 0 4361 4411 503051595 503051645 1.650000e-05 62.1
30 TraesCS5D01G272200 chr7A 93.225 679 42 4 2423 3099 24849207 24849883 0.000000e+00 996.0
31 TraesCS5D01G272200 chr7A 86.735 196 20 4 2418 2613 516479736 516479925 4.300000e-51 213.0
32 TraesCS5D01G272200 chr7A 86.316 190 22 2 2293 2482 24849110 24849295 2.590000e-48 204.0
33 TraesCS5D01G272200 chr7A 84.772 197 24 5 2418 2613 184036350 184036159 5.600000e-45 193.0
34 TraesCS5D01G272200 chr2D 80.761 473 81 8 5014 5480 45475811 45476279 1.450000e-95 361.0
35 TraesCS5D01G272200 chr2D 80.460 174 21 7 2425 2596 45879387 45879225 2.680000e-23 121.0
36 TraesCS5D01G272200 chr6B 80.376 479 82 10 5009 5480 153970187 153969714 2.430000e-93 353.0
37 TraesCS5D01G272200 chr7B 80.084 477 86 8 5009 5480 103952801 103952329 4.060000e-91 346.0
38 TraesCS5D01G272200 chr7B 86.598 194 17 5 2423 2615 559138723 559138538 7.200000e-49 206.0
39 TraesCS5D01G272200 chr7B 77.338 278 54 9 2291 2566 60047926 60048196 7.350000e-34 156.0
40 TraesCS5D01G272200 chr7B 75.410 305 59 14 5120 5417 104556828 104556533 3.440000e-27 134.0
41 TraesCS5D01G272200 chr7B 83.099 142 23 1 2329 2470 567565281 567565141 1.600000e-25 128.0
42 TraesCS5D01G272200 chr7B 78.667 150 28 4 2298 2445 485166656 485166509 4.520000e-16 97.1
43 TraesCS5D01G272200 chr3A 78.412 403 76 9 5048 5444 595460655 595460258 9.110000e-63 252.0
44 TraesCS5D01G272200 chr3A 96.575 146 5 0 2950 3095 725124175 725124320 5.480000e-60 243.0
45 TraesCS5D01G272200 chr1B 88.208 212 24 1 2 212 204405778 204405567 9.110000e-63 252.0
46 TraesCS5D01G272200 chr1B 84.153 183 13 9 359 534 204405393 204405220 4.390000e-36 163.0
47 TraesCS5D01G272200 chr1B 91.509 106 9 0 238 343 204405484 204405379 4.420000e-31 147.0
48 TraesCS5D01G272200 chr1B 80.488 164 30 2 5057 5220 495151642 495151803 2.070000e-24 124.0
49 TraesCS5D01G272200 chr1A 88.095 210 24 1 4 212 166321794 166322003 1.180000e-61 248.0
50 TraesCS5D01G272200 chr1A 84.153 183 15 9 359 534 166322171 166322346 1.220000e-36 165.0
51 TraesCS5D01G272200 chr1A 82.883 111 13 5 611 716 166322409 166322518 1.630000e-15 95.3
52 TraesCS5D01G272200 chr1D 87.619 210 25 1 4 212 132854785 132854576 5.480000e-60 243.0
53 TraesCS5D01G272200 chr1D 84.153 183 13 9 359 534 132854402 132854229 4.390000e-36 163.0
54 TraesCS5D01G272200 chr1D 82.353 187 28 1 5057 5243 371262980 371263161 2.040000e-34 158.0
55 TraesCS5D01G272200 chr1D 91.509 106 9 0 238 343 132854493 132854388 4.420000e-31 147.0
56 TraesCS5D01G272200 chr1D 84.028 144 20 3 2289 2430 28185636 28185778 9.580000e-28 135.0
57 TraesCS5D01G272200 chr1D 90.000 70 6 1 647 716 132853972 132853904 7.560000e-14 89.8
58 TraesCS5D01G272200 chr4D 79.464 336 52 14 2772 3105 76602888 76602568 7.140000e-54 222.0
59 TraesCS5D01G272200 chr4D 77.377 305 49 16 2453 2750 8278154 8278445 4.390000e-36 163.0
60 TraesCS5D01G272200 chr4D 85.350 157 21 2 4098 4253 497668768 497668613 1.580000e-35 161.0
61 TraesCS5D01G272200 chr4D 84.314 153 24 0 4098 4250 497647986 497648138 3.420000e-32 150.0
62 TraesCS5D01G272200 chr6A 85.890 163 23 0 2289 2451 536221453 536221291 2.030000e-39 174.0
63 TraesCS5D01G272200 chr3D 78.148 270 44 11 2291 2556 168572699 168572957 2.040000e-34 158.0
64 TraesCS5D01G272200 chr4B 80.769 182 32 1 4075 4253 638844340 638844521 7.400000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G272200 chr5D 375406121 375411600 5479 True 10120.000 10120 100.00000 1 5480 1 chr5D.!!$R1 5479
1 TraesCS5D01G272200 chr5B 448273097 448279464 6367 True 739.875 2750 90.52325 1 5480 8 chr5B.!!$R7 5479
2 TraesCS5D01G272200 chr5B 441638195 441638775 580 True 363.000 363 78.21600 3194 3766 1 chr5B.!!$R3 572
3 TraesCS5D01G272200 chr5A 476689576 476691758 2182 True 776.500 1325 88.34700 3933 5480 2 chr5A.!!$R4 1547
4 TraesCS5D01G272200 chr5A 476752431 476755576 3145 True 731.000 1321 91.06125 47 3936 4 chr5A.!!$R5 3889
5 TraesCS5D01G272200 chr5A 474816883 474817463 580 True 379.000 379 78.73100 3194 3766 1 chr5A.!!$R2 572
6 TraesCS5D01G272200 chr7A 24849110 24849883 773 False 600.000 996 89.77050 2293 3099 2 chr7A.!!$F2 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
946 2190 0.179073 TAGAGCAATCGAGCAAGGGC 60.179 55.0 0.0 0.0 41.61 5.19 F
1134 2378 0.028902 GTGCAAACGTGTCCCTGTTC 59.971 55.0 0.0 0.0 0.00 3.18 F
1631 3608 0.033601 TTGGCATTCCGTTGGGCTAT 60.034 50.0 0.0 0.0 34.14 2.97 F
2448 4479 0.673437 CAGGCCGTGTTGTGGAAAAT 59.327 50.0 0.0 0.0 0.00 1.82 F
2822 4855 0.394565 GGGACATAGAGGCTGCGAAT 59.605 55.0 0.0 0.0 0.00 3.34 F
2854 4887 0.923358 GTGAGGGAGGAGAGAGAGGA 59.077 60.0 0.0 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2453 4484 0.165079 CGTAACATGACCCGTGTTGC 59.835 55.000 13.11 11.08 42.56 4.17 R
2455 4486 0.680618 TCCGTAACATGACCCGTGTT 59.319 50.000 0.00 9.19 44.42 3.32 R
2456 4487 0.680618 TTCCGTAACATGACCCGTGT 59.319 50.000 0.00 0.00 34.83 4.49 R
4324 6365 0.666913 TAGCCTTCGTCGAGCATACC 59.333 55.000 8.91 0.00 0.00 2.73 R
4411 6452 1.079819 GACGGCTGCTGAGCTTGTA 60.080 57.895 16.72 0.00 45.44 2.41 R
4678 6721 1.541233 CCCGTGTCTGAAGCTCTGTTT 60.541 52.381 0.00 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 115 3.353029 CGTGAACGTGGCCATGCA 61.353 61.111 25.30 12.92 34.11 3.96
250 291 1.369091 CGAACCGCATCCTTCAAGGG 61.369 60.000 2.75 0.00 35.59 3.95
256 297 0.749454 GCATCCTTCAAGGGCGACAT 60.749 55.000 2.75 0.00 35.59 3.06
292 333 1.558756 AGAGCTCCTGGTGGAATTCAG 59.441 52.381 10.93 0.00 42.66 3.02
333 374 3.399440 AGAAGTTCTGTGCTGAGAAGG 57.601 47.619 4.10 0.00 32.53 3.46
334 375 2.703007 AGAAGTTCTGTGCTGAGAAGGT 59.297 45.455 4.10 0.00 32.53 3.50
432 473 2.871022 CAGCAGCAGATATCTGTGGTTC 59.129 50.000 28.92 14.97 45.45 3.62
464 505 6.401047 AGTGATTCCATAAAATGATGCTGG 57.599 37.500 0.00 0.00 0.00 4.85
468 509 7.550196 GTGATTCCATAAAATGATGCTGGTTTT 59.450 33.333 0.00 0.00 0.00 2.43
484 525 5.660460 CTGGTTTTGTTTCTTGCCTAACTT 58.340 37.500 0.00 0.00 0.00 2.66
496 537 4.778213 TGCCTAACTTGAGGAATGCTAT 57.222 40.909 0.00 0.00 39.15 2.97
503 544 7.601886 CCTAACTTGAGGAATGCTATGTAGATG 59.398 40.741 0.00 0.00 39.15 2.90
534 575 0.605589 GCCTTTTGCCGTACAGGTCT 60.606 55.000 0.00 0.00 43.70 3.85
535 576 1.156736 CCTTTTGCCGTACAGGTCTG 58.843 55.000 0.00 0.00 43.70 3.51
536 577 1.270625 CCTTTTGCCGTACAGGTCTGA 60.271 52.381 4.84 0.00 43.70 3.27
540 581 2.623878 TGCCGTACAGGTCTGAAAAA 57.376 45.000 4.84 0.00 43.70 1.94
567 608 7.805163 TGATGGTTTTAGATGGACATCTACAT 58.195 34.615 18.82 17.53 46.69 2.29
569 610 8.682936 ATGGTTTTAGATGGACATCTACATTC 57.317 34.615 18.82 11.21 46.69 2.67
570 611 7.861629 TGGTTTTAGATGGACATCTACATTCT 58.138 34.615 18.82 0.00 46.69 2.40
571 612 8.988060 TGGTTTTAGATGGACATCTACATTCTA 58.012 33.333 18.82 3.86 46.69 2.10
572 613 9.262358 GGTTTTAGATGGACATCTACATTCTAC 57.738 37.037 18.82 9.45 46.69 2.59
573 614 9.817809 GTTTTAGATGGACATCTACATTCTACA 57.182 33.333 18.82 2.61 46.69 2.74
575 616 8.768501 TTAGATGGACATCTACATTCTACAGT 57.231 34.615 18.82 0.00 46.69 3.55
576 617 9.862149 TTAGATGGACATCTACATTCTACAGTA 57.138 33.333 18.82 0.93 46.69 2.74
577 618 8.172352 AGATGGACATCTACATTCTACAGTAC 57.828 38.462 12.86 0.00 45.69 2.73
578 619 8.001875 AGATGGACATCTACATTCTACAGTACT 58.998 37.037 12.86 0.00 45.69 2.73
579 620 7.334844 TGGACATCTACATTCTACAGTACTG 57.665 40.000 21.44 21.44 0.00 2.74
580 621 6.321435 TGGACATCTACATTCTACAGTACTGG 59.679 42.308 26.12 10.11 34.19 4.00
581 622 6.150396 ACATCTACATTCTACAGTACTGGC 57.850 41.667 26.12 0.00 34.19 4.85
582 623 5.656859 ACATCTACATTCTACAGTACTGGCA 59.343 40.000 26.12 12.82 34.19 4.92
703 750 5.197224 TCATGAGATCCTCCCAACATTTT 57.803 39.130 0.00 0.00 0.00 1.82
705 752 6.122277 TCATGAGATCCTCCCAACATTTTAC 58.878 40.000 0.00 0.00 0.00 2.01
730 1954 3.745803 GCCGAGGAAGACGACGGT 61.746 66.667 0.00 0.00 42.57 4.83
753 1977 2.982130 GCGAGGGCCTCAAAGAGA 59.018 61.111 31.69 0.00 0.00 3.10
754 1978 1.448717 GCGAGGGCCTCAAAGAGAC 60.449 63.158 31.69 8.92 0.00 3.36
792 2016 1.825341 GCCTTTTGATGGATGGGCC 59.175 57.895 0.00 0.00 34.19 5.80
795 2019 0.457035 CTTTTGATGGATGGGCCGTG 59.543 55.000 1.02 0.00 40.66 4.94
798 2022 0.621082 TTGATGGATGGGCCGTGTTA 59.379 50.000 1.02 0.00 40.66 2.41
810 2034 1.463528 GCCGTGTTATGTGCGAACTTC 60.464 52.381 0.00 0.00 0.00 3.01
818 2042 2.357034 TGCGAACTTCCTGTCGGC 60.357 61.111 0.00 0.00 0.00 5.54
840 2064 0.322816 ACGGCCCGTGTAGTTAGAGA 60.323 55.000 8.62 0.00 39.18 3.10
841 2065 0.381089 CGGCCCGTGTAGTTAGAGAG 59.619 60.000 0.00 0.00 0.00 3.20
842 2066 0.745468 GGCCCGTGTAGTTAGAGAGG 59.255 60.000 0.00 0.00 0.00 3.69
843 2067 0.745468 GCCCGTGTAGTTAGAGAGGG 59.255 60.000 0.00 0.00 40.27 4.30
844 2068 0.745468 CCCGTGTAGTTAGAGAGGGC 59.255 60.000 0.00 0.00 0.00 5.19
845 2069 1.685491 CCCGTGTAGTTAGAGAGGGCT 60.685 57.143 0.00 0.00 0.00 5.19
846 2070 1.405821 CCGTGTAGTTAGAGAGGGCTG 59.594 57.143 0.00 0.00 0.00 4.85
847 2071 2.093106 CGTGTAGTTAGAGAGGGCTGT 58.907 52.381 0.00 0.00 0.00 4.40
848 2072 2.492484 CGTGTAGTTAGAGAGGGCTGTT 59.508 50.000 0.00 0.00 0.00 3.16
849 2073 3.693085 CGTGTAGTTAGAGAGGGCTGTTA 59.307 47.826 0.00 0.00 0.00 2.41
850 2074 4.157289 CGTGTAGTTAGAGAGGGCTGTTAA 59.843 45.833 0.00 0.00 0.00 2.01
851 2075 5.409211 GTGTAGTTAGAGAGGGCTGTTAAC 58.591 45.833 0.00 0.00 0.00 2.01
852 2076 5.047519 GTGTAGTTAGAGAGGGCTGTTAACA 60.048 44.000 8.28 8.28 0.00 2.41
853 2077 4.810191 AGTTAGAGAGGGCTGTTAACAG 57.190 45.455 27.85 27.85 46.40 3.16
854 2078 3.515901 AGTTAGAGAGGGCTGTTAACAGG 59.484 47.826 31.42 16.60 43.94 4.00
862 2086 0.242017 GCTGTTAACAGGCCTTGCTG 59.758 55.000 31.42 9.17 43.94 4.41
863 2087 1.609208 CTGTTAACAGGCCTTGCTGT 58.391 50.000 25.19 0.00 40.20 4.40
864 2088 1.956477 CTGTTAACAGGCCTTGCTGTT 59.044 47.619 25.19 8.09 44.69 3.16
865 2089 1.680735 TGTTAACAGGCCTTGCTGTTG 59.319 47.619 16.23 1.53 42.82 3.33
866 2090 1.000274 GTTAACAGGCCTTGCTGTTGG 60.000 52.381 16.23 0.00 42.82 3.77
867 2091 0.539438 TAACAGGCCTTGCTGTTGGG 60.539 55.000 16.23 0.00 42.82 4.12
873 2117 1.856265 GCCTTGCTGTTGGGTTCTCG 61.856 60.000 0.00 0.00 0.00 4.04
891 2135 3.324268 TCTCGTGTCGACCCTAGATAGAT 59.676 47.826 14.12 0.00 0.00 1.98
892 2136 4.525874 TCTCGTGTCGACCCTAGATAGATA 59.474 45.833 14.12 0.00 0.00 1.98
895 2139 5.187381 TCGTGTCGACCCTAGATAGATAGAT 59.813 44.000 14.12 0.00 0.00 1.98
896 2140 6.379417 TCGTGTCGACCCTAGATAGATAGATA 59.621 42.308 14.12 0.00 0.00 1.98
900 2144 6.927381 GTCGACCCTAGATAGATAGATAGAGC 59.073 46.154 3.51 0.00 0.00 4.09
901 2145 5.924254 CGACCCTAGATAGATAGATAGAGCG 59.076 48.000 0.00 0.00 0.00 5.03
902 2146 6.239092 CGACCCTAGATAGATAGATAGAGCGA 60.239 46.154 0.00 0.00 0.00 4.93
903 2147 6.823497 ACCCTAGATAGATAGATAGAGCGAC 58.177 44.000 0.00 0.00 0.00 5.19
904 2148 6.183361 ACCCTAGATAGATAGATAGAGCGACC 60.183 46.154 0.00 0.00 0.00 4.79
905 2149 6.042781 CCCTAGATAGATAGATAGAGCGACCT 59.957 46.154 0.00 0.00 0.00 3.85
906 2150 7.419750 CCCTAGATAGATAGATAGAGCGACCTT 60.420 44.444 0.00 0.00 0.00 3.50
907 2151 7.656137 CCTAGATAGATAGATAGAGCGACCTTC 59.344 44.444 0.00 0.00 0.00 3.46
908 2152 7.195374 AGATAGATAGATAGAGCGACCTTCT 57.805 40.000 0.00 0.00 0.00 2.85
909 2153 7.272978 AGATAGATAGATAGAGCGACCTTCTC 58.727 42.308 0.00 0.00 0.00 2.87
910 2154 4.585879 AGATAGATAGAGCGACCTTCTCC 58.414 47.826 0.00 0.00 0.00 3.71
911 2155 2.738587 AGATAGAGCGACCTTCTCCA 57.261 50.000 0.00 0.00 0.00 3.86
912 2156 3.019799 AGATAGAGCGACCTTCTCCAA 57.980 47.619 0.00 0.00 0.00 3.53
913 2157 3.366396 AGATAGAGCGACCTTCTCCAAA 58.634 45.455 0.00 0.00 0.00 3.28
914 2158 3.769844 AGATAGAGCGACCTTCTCCAAAA 59.230 43.478 0.00 0.00 0.00 2.44
915 2159 2.464157 AGAGCGACCTTCTCCAAAAG 57.536 50.000 0.00 0.00 0.00 2.27
916 2160 1.971357 AGAGCGACCTTCTCCAAAAGA 59.029 47.619 0.00 0.00 0.00 2.52
917 2161 2.368875 AGAGCGACCTTCTCCAAAAGAA 59.631 45.455 0.00 0.00 41.81 2.52
918 2162 3.139077 GAGCGACCTTCTCCAAAAGAAA 58.861 45.455 0.00 0.00 43.39 2.52
919 2163 3.551846 AGCGACCTTCTCCAAAAGAAAA 58.448 40.909 0.00 0.00 43.39 2.29
920 2164 3.951680 AGCGACCTTCTCCAAAAGAAAAA 59.048 39.130 0.00 0.00 43.39 1.94
921 2165 4.036852 AGCGACCTTCTCCAAAAGAAAAAG 59.963 41.667 0.00 0.00 43.39 2.27
922 2166 4.036380 GCGACCTTCTCCAAAAGAAAAAGA 59.964 41.667 0.00 0.00 43.39 2.52
923 2167 5.278512 GCGACCTTCTCCAAAAGAAAAAGAT 60.279 40.000 0.00 0.00 43.39 2.40
924 2168 6.072673 GCGACCTTCTCCAAAAGAAAAAGATA 60.073 38.462 0.00 0.00 43.39 1.98
925 2169 7.522374 CGACCTTCTCCAAAAGAAAAAGATAG 58.478 38.462 0.00 0.00 43.39 2.08
926 2170 7.387948 CGACCTTCTCCAAAAGAAAAAGATAGA 59.612 37.037 0.00 0.00 43.39 1.98
927 2171 9.237187 GACCTTCTCCAAAAGAAAAAGATAGAT 57.763 33.333 0.00 0.00 43.39 1.98
932 2176 9.606631 TCTCCAAAAGAAAAAGATAGATAGAGC 57.393 33.333 0.00 0.00 0.00 4.09
933 2177 9.388506 CTCCAAAAGAAAAAGATAGATAGAGCA 57.611 33.333 0.00 0.00 0.00 4.26
934 2178 9.739276 TCCAAAAGAAAAAGATAGATAGAGCAA 57.261 29.630 0.00 0.00 0.00 3.91
946 2190 0.179073 TAGAGCAATCGAGCAAGGGC 60.179 55.000 0.00 0.00 41.61 5.19
1008 2252 2.202878 CGTCGTACCATGGGGCTG 60.203 66.667 18.09 2.80 37.90 4.85
1009 2253 2.513897 GTCGTACCATGGGGCTGC 60.514 66.667 18.09 0.00 37.90 5.25
1010 2254 2.687200 TCGTACCATGGGGCTGCT 60.687 61.111 18.09 0.00 37.90 4.24
1011 2255 2.514592 CGTACCATGGGGCTGCTG 60.515 66.667 18.09 0.00 37.90 4.41
1012 2256 2.124151 GTACCATGGGGCTGCTGG 60.124 66.667 18.09 1.39 37.90 4.85
1013 2257 4.127744 TACCATGGGGCTGCTGGC 62.128 66.667 18.09 8.77 37.90 4.85
1031 2275 3.482783 GCTCAAGCGCCTCGTGTC 61.483 66.667 2.29 0.00 0.00 3.67
1032 2276 2.811317 CTCAAGCGCCTCGTGTCC 60.811 66.667 2.29 0.00 0.00 4.02
1033 2277 4.717629 TCAAGCGCCTCGTGTCCG 62.718 66.667 2.29 0.00 0.00 4.79
1063 2307 1.664321 CCGGAAGACTCGATCCCGTT 61.664 60.000 0.00 0.00 38.61 4.44
1123 2367 2.563976 CGTTCTGATCTTGTGCAAACG 58.436 47.619 0.00 0.00 33.17 3.60
1126 2370 2.560504 TCTGATCTTGTGCAAACGTGT 58.439 42.857 0.00 0.00 0.00 4.49
1134 2378 0.028902 GTGCAAACGTGTCCCTGTTC 59.971 55.000 0.00 0.00 0.00 3.18
1149 2393 3.133003 CCCTGTTCGAGATGGTACTGAAT 59.867 47.826 0.00 0.00 0.00 2.57
1150 2394 4.341235 CCCTGTTCGAGATGGTACTGAATA 59.659 45.833 0.00 0.00 0.00 1.75
1171 2415 2.665000 CGTGGCATGAGACCTGGT 59.335 61.111 0.00 0.00 0.00 4.00
1187 2431 4.086457 ACCTGGTGTTTTCTTGTCAACTT 58.914 39.130 0.00 0.00 0.00 2.66
1191 2435 6.183360 CCTGGTGTTTTCTTGTCAACTTATGT 60.183 38.462 0.00 0.00 0.00 2.29
1199 2443 8.450578 TTTCTTGTCAACTTATGTCAATGTCT 57.549 30.769 0.00 0.00 36.66 3.41
1201 2445 6.427853 TCTTGTCAACTTATGTCAATGTCTGG 59.572 38.462 0.00 0.00 36.66 3.86
1269 2513 1.073199 CCGGTGGCCAAGAGAAAGT 59.927 57.895 7.24 0.00 0.00 2.66
1287 2531 1.891919 TGCTCGCCCTGTCAACAAC 60.892 57.895 0.00 0.00 0.00 3.32
1296 2540 3.659786 CCCTGTCAACAACAAGACGATA 58.340 45.455 0.00 0.00 37.45 2.92
1328 3082 3.443925 GCCAAAAGGAGGAGGCGC 61.444 66.667 0.00 0.00 37.41 6.53
1436 3394 7.428826 CACTTTCAGAGTTGCTTTTTAGGAAT 58.571 34.615 0.00 0.00 36.10 3.01
1440 3398 7.687941 TCAGAGTTGCTTTTTAGGAATAAGG 57.312 36.000 0.00 0.00 0.00 2.69
1450 3408 8.967918 GCTTTTTAGGAATAAGGAATAACAGGT 58.032 33.333 0.00 0.00 0.00 4.00
1481 3441 7.754851 TTTTCTGGTTTCTTACTGTATTCCC 57.245 36.000 0.00 0.00 0.00 3.97
1482 3442 6.442541 TTCTGGTTTCTTACTGTATTCCCA 57.557 37.500 0.00 0.00 0.00 4.37
1490 3450 6.466885 TCTTACTGTATTCCCAACTAGAGC 57.533 41.667 0.00 0.00 0.00 4.09
1533 3493 7.778382 AGGAACAAGTAAAGAATAACAGGTGTT 59.222 33.333 0.24 0.24 41.73 3.32
1535 3495 9.797556 GAACAAGTAAAGAATAACAGGTGTTTT 57.202 29.630 0.00 0.00 39.31 2.43
1554 3531 3.883830 TTTTGTGTGTGATTGCCAACT 57.116 38.095 0.00 0.00 0.00 3.16
1556 3533 4.991153 TTTGTGTGTGATTGCCAACTAA 57.009 36.364 0.00 0.00 0.00 2.24
1575 3552 0.324943 ATGACACTGTCGGGGAAAGG 59.675 55.000 4.71 0.00 34.95 3.11
1577 3554 0.320508 GACACTGTCGGGGAAAGGAC 60.321 60.000 0.00 0.00 0.00 3.85
1585 3562 0.036294 CGGGGAAAGGACACTTCTCC 60.036 60.000 0.00 0.00 35.41 3.71
1631 3608 0.033601 TTGGCATTCCGTTGGGCTAT 60.034 50.000 0.00 0.00 34.14 2.97
1665 3688 4.499472 TCCATATCGTCCTATTTCCCCTT 58.501 43.478 0.00 0.00 0.00 3.95
1703 3726 2.029110 CGCCTCCACAATTCCAATGTTT 60.029 45.455 0.00 0.00 0.00 2.83
1808 3831 1.750351 TGTGTATCTCGCGCGTTATC 58.250 50.000 30.98 17.10 0.00 1.75
1826 3849 1.071471 CAAGTTCCTGGACACGCCT 59.929 57.895 0.00 0.00 37.63 5.52
1946 3969 0.882927 TTGAGAAAACACTCGGGCGG 60.883 55.000 0.00 0.00 39.49 6.13
2063 4086 4.202121 TGAAGAAGTCGTACTTTCAGTGCT 60.202 41.667 2.51 0.00 38.80 4.40
2206 4237 4.944930 CGGGTATTGTGGAGGTATTTTTCA 59.055 41.667 0.00 0.00 0.00 2.69
2211 4242 8.190784 GGTATTGTGGAGGTATTTTTCAAGATG 58.809 37.037 0.00 0.00 0.00 2.90
2217 4248 6.371548 TGGAGGTATTTTTCAAGATGAGTTCG 59.628 38.462 0.00 0.00 0.00 3.95
2227 4258 7.643528 TTCAAGATGAGTTCGCATATATGAC 57.356 36.000 17.10 5.96 0.00 3.06
2236 4267 7.970614 TGAGTTCGCATATATGACAGTATGATC 59.029 37.037 17.10 3.10 39.69 2.92
2296 4327 2.962859 AGTCAAAACTTCAAGGGCCAT 58.037 42.857 6.18 0.00 28.74 4.40
2328 4359 2.526077 GCCGGCGGATCTTTTTAAAAG 58.474 47.619 33.44 10.89 0.00 2.27
2329 4360 2.162809 GCCGGCGGATCTTTTTAAAAGA 59.837 45.455 33.44 20.42 0.00 2.52
2330 4361 3.181490 GCCGGCGGATCTTTTTAAAAGAT 60.181 43.478 33.44 26.87 39.53 2.40
2376 4407 1.899814 TGGCAGATTTAGTGACCGAGT 59.100 47.619 0.00 0.00 0.00 4.18
2399 4430 6.540189 AGTGTCATCCTCTATTATTGCAACAC 59.460 38.462 0.00 0.28 33.99 3.32
2405 4436 2.020720 CTATTATTGCAACACGGGCCA 58.979 47.619 4.39 0.00 0.00 5.36
2417 4448 1.112315 ACGGGCCATGTTGCAGAAAA 61.112 50.000 4.39 0.00 0.00 2.29
2444 4475 2.203139 CACAGGCCGTGTTGTGGA 60.203 61.111 13.69 0.00 40.69 4.02
2445 4476 1.821759 CACAGGCCGTGTTGTGGAA 60.822 57.895 13.69 0.00 40.69 3.53
2446 4477 1.077357 ACAGGCCGTGTTGTGGAAA 60.077 52.632 0.00 0.00 34.94 3.13
2447 4478 0.681564 ACAGGCCGTGTTGTGGAAAA 60.682 50.000 0.00 0.00 34.94 2.29
2448 4479 0.673437 CAGGCCGTGTTGTGGAAAAT 59.327 50.000 0.00 0.00 0.00 1.82
2449 4480 1.068434 CAGGCCGTGTTGTGGAAAATT 59.932 47.619 0.00 0.00 0.00 1.82
2450 4481 1.760029 AGGCCGTGTTGTGGAAAATTT 59.240 42.857 0.00 0.00 0.00 1.82
2451 4482 2.131972 GGCCGTGTTGTGGAAAATTTC 58.868 47.619 0.00 0.00 0.00 2.17
2452 4483 2.223947 GGCCGTGTTGTGGAAAATTTCT 60.224 45.455 5.65 0.00 0.00 2.52
2453 4484 2.794350 GCCGTGTTGTGGAAAATTTCTG 59.206 45.455 5.65 0.00 0.00 3.02
2454 4485 2.794350 CCGTGTTGTGGAAAATTTCTGC 59.206 45.455 5.65 0.14 0.00 4.26
2455 4486 3.443037 CGTGTTGTGGAAAATTTCTGCA 58.557 40.909 5.65 2.67 0.00 4.41
2456 4487 3.862267 CGTGTTGTGGAAAATTTCTGCAA 59.138 39.130 5.65 8.19 0.00 4.08
2457 4488 4.259770 CGTGTTGTGGAAAATTTCTGCAAC 60.260 41.667 24.12 24.12 0.00 4.17
2458 4489 4.629200 GTGTTGTGGAAAATTTCTGCAACA 59.371 37.500 26.86 26.86 0.00 3.33
2459 4490 4.629200 TGTTGTGGAAAATTTCTGCAACAC 59.371 37.500 26.86 17.90 0.00 3.32
2491 4522 6.642950 TGTTACGGAAATTTTTGCAACATAGG 59.357 34.615 0.00 0.00 0.00 2.57
2500 4531 5.590530 TTTTGCAACATAGGTCAAGTTGT 57.409 34.783 0.00 0.00 43.31 3.32
2504 4535 5.804639 TGCAACATAGGTCAAGTTGTAGAT 58.195 37.500 2.11 0.00 43.31 1.98
2505 4536 6.237901 TGCAACATAGGTCAAGTTGTAGATT 58.762 36.000 2.11 0.00 43.31 2.40
2544 4575 8.367156 ACACAGGTCTTGTTGCAAAATAATTAT 58.633 29.630 0.00 0.00 38.16 1.28
2615 4647 4.568760 TGTTTCGGAAAAGAAATTGCAACC 59.431 37.500 0.00 0.00 41.46 3.77
2618 4650 2.476241 CGGAAAAGAAATTGCAACCAGC 59.524 45.455 0.00 0.00 45.96 4.85
2635 4667 5.212532 ACCAGCATTTTGTTGCAGATTTA 57.787 34.783 0.00 0.00 45.23 1.40
2685 4717 7.749126 GGGATTATTTCTACAAAACAACACTCG 59.251 37.037 0.00 0.00 0.00 4.18
2700 4732 4.088823 ACACTCGTACGGTAGTCAAATC 57.911 45.455 16.52 0.00 0.00 2.17
2701 4733 3.096461 CACTCGTACGGTAGTCAAATCG 58.904 50.000 16.52 0.00 0.00 3.34
2702 4734 2.744202 ACTCGTACGGTAGTCAAATCGT 59.256 45.455 16.52 0.00 39.30 3.73
2746 4779 1.454847 TTGCAGAAACGGGTGCCTT 60.455 52.632 0.00 0.00 39.04 4.35
2789 4822 1.142870 GGGCATAGTAATCCAGCACCA 59.857 52.381 0.00 0.00 0.00 4.17
2822 4855 0.394565 GGGACATAGAGGCTGCGAAT 59.605 55.000 0.00 0.00 0.00 3.34
2836 4869 2.432510 CTGCGAATTTAGAGGAGAGGGT 59.567 50.000 0.00 0.00 0.00 4.34
2854 4887 0.923358 GTGAGGGAGGAGAGAGAGGA 59.077 60.000 0.00 0.00 0.00 3.71
2855 4888 1.286553 GTGAGGGAGGAGAGAGAGGAA 59.713 57.143 0.00 0.00 0.00 3.36
2893 4926 4.253257 GAGGAGACGGGCGCGTAG 62.253 72.222 29.59 0.00 0.00 3.51
2927 4960 4.415150 CGGTGGCAGGAGCATGGT 62.415 66.667 0.00 0.00 44.61 3.55
2931 4964 4.828296 GGCAGGAGCATGGTGGGG 62.828 72.222 0.00 0.00 44.61 4.96
2958 4991 2.303549 ATCCAGCCGCGGAGAAGAAG 62.304 60.000 33.48 9.44 38.83 2.85
2989 5022 5.669447 AGGGAGAAGATAAGGATGTGATGTT 59.331 40.000 0.00 0.00 0.00 2.71
3002 5035 6.652481 AGGATGTGATGTTGTAGACTTTTCTG 59.348 38.462 0.00 0.00 32.75 3.02
3062 5095 2.578981 GCGTAGAAGGCGACGGAC 60.579 66.667 0.00 0.00 42.35 4.79
3072 5105 2.732094 CGACGGACGGAACACACC 60.732 66.667 0.00 0.00 38.46 4.16
3099 5132 3.105937 GTCGGTTGAACACAAGCTTTTC 58.894 45.455 0.00 0.00 39.09 2.29
3100 5133 2.098443 TCGGTTGAACACAAGCTTTTCC 59.902 45.455 0.00 0.00 39.09 3.13
3101 5134 2.798145 CGGTTGAACACAAGCTTTTCCC 60.798 50.000 0.00 0.00 39.09 3.97
3102 5135 2.167487 GGTTGAACACAAGCTTTTCCCA 59.833 45.455 0.00 0.00 38.48 4.37
3103 5136 3.368948 GGTTGAACACAAGCTTTTCCCAA 60.369 43.478 0.00 0.00 38.48 4.12
3104 5137 4.249661 GTTGAACACAAGCTTTTCCCAAA 58.750 39.130 0.00 0.00 0.00 3.28
3105 5138 3.855858 TGAACACAAGCTTTTCCCAAAC 58.144 40.909 0.00 0.00 0.00 2.93
3106 5139 3.513515 TGAACACAAGCTTTTCCCAAACT 59.486 39.130 0.00 0.00 0.00 2.66
3107 5140 4.020662 TGAACACAAGCTTTTCCCAAACTT 60.021 37.500 0.00 0.00 0.00 2.66
3108 5141 4.123497 ACACAAGCTTTTCCCAAACTTC 57.877 40.909 0.00 0.00 0.00 3.01
3304 5337 1.502231 GACTTGCTCGCTTGACAAGA 58.498 50.000 19.51 0.00 42.71 3.02
3622 5655 2.679837 CCTTGTTCATTATGCTCGTGCT 59.320 45.455 11.19 0.00 40.48 4.40
3799 5840 7.966812 ACATAACCTTGACATATCTATGCAGA 58.033 34.615 0.00 0.00 37.19 4.26
3872 5913 4.521943 CGGATTTTTCTTCATGATCGAGC 58.478 43.478 0.00 0.00 0.00 5.03
3939 5980 2.189594 TTCTGGATGCTTGTCCTGTG 57.810 50.000 5.24 0.00 39.12 3.66
4098 6139 2.307392 TGAATTGATTTCCGGAGACCCA 59.693 45.455 3.34 0.00 33.04 4.51
4134 6175 1.304381 AGAACACCGGCATGGCAAT 60.304 52.632 20.37 2.97 43.94 3.56
4161 6202 2.496899 ATGTGACGATCAAGGGCTTT 57.503 45.000 0.00 0.00 0.00 3.51
4300 6341 3.520290 TTGACGACGGAATTGCTAGAT 57.480 42.857 0.00 0.00 0.00 1.98
4301 6342 2.809446 TGACGACGGAATTGCTAGATG 58.191 47.619 0.00 0.00 0.00 2.90
4302 6343 1.523095 GACGACGGAATTGCTAGATGC 59.477 52.381 0.00 0.00 43.25 3.91
4411 6452 3.482436 TCCACGGTCAAGCTAAATGTTT 58.518 40.909 0.00 0.00 0.00 2.83
4444 6485 3.057734 AGCCGTCGCTATGCTATAAAAC 58.942 45.455 0.00 0.00 46.08 2.43
4453 6494 7.063074 GTCGCTATGCTATAAAACCGTATGAAT 59.937 37.037 0.00 0.00 0.00 2.57
4455 6496 9.031360 CGCTATGCTATAAAACCGTATGAATAT 57.969 33.333 0.00 0.00 0.00 1.28
4668 6711 1.266178 TGCTACTACTTGCCTGCAGA 58.734 50.000 17.39 0.00 0.00 4.26
4669 6712 1.623311 TGCTACTACTTGCCTGCAGAA 59.377 47.619 17.39 0.72 0.00 3.02
4670 6713 2.003301 GCTACTACTTGCCTGCAGAAC 58.997 52.381 17.39 7.59 0.00 3.01
4671 6714 2.612972 GCTACTACTTGCCTGCAGAACA 60.613 50.000 17.39 10.51 0.00 3.18
4672 6715 2.867109 ACTACTTGCCTGCAGAACAT 57.133 45.000 17.39 1.73 0.00 2.71
4673 6716 3.981071 ACTACTTGCCTGCAGAACATA 57.019 42.857 17.39 2.86 0.00 2.29
4674 6717 3.866651 ACTACTTGCCTGCAGAACATAG 58.133 45.455 17.39 13.96 0.00 2.23
4675 6718 2.867109 ACTTGCCTGCAGAACATAGT 57.133 45.000 17.39 14.70 0.00 2.12
4676 6719 2.430465 ACTTGCCTGCAGAACATAGTG 58.570 47.619 17.39 6.63 0.00 2.74
4677 6720 2.224621 ACTTGCCTGCAGAACATAGTGT 60.225 45.455 17.39 7.19 0.00 3.55
4678 6721 3.007940 ACTTGCCTGCAGAACATAGTGTA 59.992 43.478 17.39 0.00 0.00 2.90
4696 6739 3.182572 GTGTAAACAGAGCTTCAGACACG 59.817 47.826 0.00 0.00 0.00 4.49
4736 6779 1.468914 GAGCGGGAGTTTTCATGGTTC 59.531 52.381 0.00 0.00 0.00 3.62
4762 6805 2.094649 ACGCACTAGGCTACAGACTTTC 60.095 50.000 0.00 0.00 41.67 2.62
4785 6828 1.203013 GGCTTAAAAGGTCACCCTGGT 60.203 52.381 0.00 0.00 41.56 4.00
4849 6893 4.174009 CTCCATTGCTGCAAAGATGAAAG 58.826 43.478 20.06 9.98 0.00 2.62
4853 6897 1.203038 TGCTGCAAAGATGAAAGGGGA 60.203 47.619 0.00 0.00 0.00 4.81
4860 7385 4.268359 CAAAGATGAAAGGGGAAGGAGAG 58.732 47.826 0.00 0.00 0.00 3.20
4945 7915 5.244785 AGCGAGTATAATCGACAGACAAA 57.755 39.130 25.30 0.00 45.56 2.83
4946 7916 5.035443 AGCGAGTATAATCGACAGACAAAC 58.965 41.667 25.30 5.02 45.56 2.93
4947 7917 4.086227 GCGAGTATAATCGACAGACAAACG 60.086 45.833 25.30 0.00 45.56 3.60
4948 7918 5.260900 CGAGTATAATCGACAGACAAACGA 58.739 41.667 17.16 0.00 45.56 3.85
4949 7919 5.907945 CGAGTATAATCGACAGACAAACGAT 59.092 40.000 17.16 0.00 45.56 3.73
4950 7920 6.085198 CGAGTATAATCGACAGACAAACGATC 59.915 42.308 17.16 0.00 45.56 3.69
4952 7922 7.255569 AGTATAATCGACAGACAAACGATCAA 58.744 34.615 0.00 0.00 44.13 2.57
4953 7923 4.647291 AATCGACAGACAAACGATCAAC 57.353 40.909 0.00 0.00 44.13 3.18
4957 7927 4.330347 TCGACAGACAAACGATCAACAAAA 59.670 37.500 0.00 0.00 0.00 2.44
4958 7928 5.025190 CGACAGACAAACGATCAACAAAAA 58.975 37.500 0.00 0.00 0.00 1.94
5000 7970 3.741955 AGCCTCCTTCTTCCTCCTATTT 58.258 45.455 0.00 0.00 0.00 1.40
5001 7971 3.457749 AGCCTCCTTCTTCCTCCTATTTG 59.542 47.826 0.00 0.00 0.00 2.32
5002 7972 3.814625 CCTCCTTCTTCCTCCTATTTGC 58.185 50.000 0.00 0.00 0.00 3.68
5006 7976 3.944015 CCTTCTTCCTCCTATTTGCACTG 59.056 47.826 0.00 0.00 0.00 3.66
5017 7987 5.012664 TCCTATTTGCACTGGACAGTAAAGA 59.987 40.000 4.41 0.44 40.20 2.52
5064 8035 4.394729 TGTTGTACCAGGATTTGAAGACC 58.605 43.478 0.00 0.00 0.00 3.85
5065 8036 4.141367 TGTTGTACCAGGATTTGAAGACCA 60.141 41.667 0.00 0.00 0.00 4.02
5080 8051 1.204941 AGACCACAATAGTCACTCGCC 59.795 52.381 0.00 0.00 36.68 5.54
5098 8069 1.611491 GCCCCTTGAGACGAGATCTAG 59.389 57.143 0.00 0.00 38.00 2.43
5118 8089 2.163010 AGAAATGGCTGAAGCAACATCG 59.837 45.455 4.43 0.00 44.36 3.84
5132 8103 0.392998 ACATCGGTTGGAGCATCACC 60.393 55.000 0.00 0.00 36.25 4.02
5140 8111 2.401766 GGAGCATCACCCAACGCAG 61.402 63.158 0.00 0.00 36.25 5.18
5145 8116 1.078709 CATCACCCAACGCAGTACAG 58.921 55.000 0.00 0.00 45.00 2.74
5156 8127 1.394917 CGCAGTACAGACTTGCAATCC 59.605 52.381 0.00 0.00 31.73 3.01
5164 8135 2.163010 CAGACTTGCAATCCATCACCAC 59.837 50.000 0.00 0.00 0.00 4.16
5166 8137 0.819582 CTTGCAATCCATCACCACCC 59.180 55.000 0.00 0.00 0.00 4.61
5172 8143 0.695924 ATCCATCACCACCCGTTCAA 59.304 50.000 0.00 0.00 0.00 2.69
5185 8156 3.215975 CCCGTTCAAAGGGTTGTAGAAA 58.784 45.455 0.00 0.00 43.89 2.52
5198 8169 3.520290 TGTAGAAACTAGACCATGCCG 57.480 47.619 0.00 0.00 0.00 5.69
5209 8180 0.895100 ACCATGCCGCAGAACAACAT 60.895 50.000 0.00 0.00 0.00 2.71
5211 8182 0.457166 CATGCCGCAGAACAACATGG 60.457 55.000 0.00 0.00 35.57 3.66
5221 8192 4.217118 GCAGAACAACATGGAAGAAGATGT 59.783 41.667 0.00 0.00 34.16 3.06
5226 8197 7.884877 AGAACAACATGGAAGAAGATGTCATAA 59.115 33.333 0.00 0.00 31.43 1.90
5230 8201 5.468072 ACATGGAAGAAGATGTCATAATCGC 59.532 40.000 0.00 0.00 0.00 4.58
5271 8242 6.314896 CCAATATCTCTCCTTGAAAGACACAC 59.685 42.308 0.00 0.00 0.00 3.82
5301 8272 5.594317 GCCAAGATCTAAAAGGAGCCAATAA 59.406 40.000 0.00 0.00 0.00 1.40
5334 8305 2.086054 AACTCTCACATGCCTTCGTC 57.914 50.000 0.00 0.00 0.00 4.20
5336 8307 1.416813 CTCTCACATGCCTTCGTCGC 61.417 60.000 0.00 0.00 0.00 5.19
5337 8308 2.792290 CTCACATGCCTTCGTCGCG 61.792 63.158 0.00 0.00 0.00 5.87
5338 8309 3.853330 CACATGCCTTCGTCGCGG 61.853 66.667 6.13 0.00 0.00 6.46
5339 8310 4.063967 ACATGCCTTCGTCGCGGA 62.064 61.111 6.13 0.00 0.00 5.54
5355 8326 0.749049 CGGAGCCAGATCAGACATCA 59.251 55.000 0.00 0.00 0.00 3.07
5365 8336 3.776969 AGATCAGACATCAAGGTAGGCAA 59.223 43.478 0.00 0.00 0.00 4.52
5372 8343 2.859165 TCAAGGTAGGCAAAGACCAG 57.141 50.000 0.00 0.00 38.27 4.00
5393 8364 3.833070 AGAGAGACCTTATTCCAACACGT 59.167 43.478 0.00 0.00 0.00 4.49
5412 8383 2.512286 ATCGCTGCCACCACATCG 60.512 61.111 0.00 0.00 0.00 3.84
5425 8396 0.723459 CACATCGTCGACGTCGTCAA 60.723 55.000 34.40 18.06 40.80 3.18
5427 8398 0.179233 CATCGTCGACGTCGTCAAGA 60.179 55.000 34.40 26.82 40.80 3.02
5433 8404 1.847999 TCGACGTCGTCAAGAAAACAC 59.152 47.619 34.40 0.00 40.80 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 115 4.682778 ATATTTGCATGCAGCCAGAATT 57.317 36.364 21.50 4.07 44.83 2.17
250 291 2.548057 TCAAACAGAACCTTCATGTCGC 59.452 45.455 0.00 0.00 0.00 5.19
256 297 4.130118 GAGCTCTTCAAACAGAACCTTCA 58.870 43.478 6.43 0.00 31.61 3.02
292 333 2.321213 GTGTCAGCACCCTTCACAC 58.679 57.895 0.00 0.00 39.61 3.82
333 374 3.313274 TTTTTGACGCGTCTTCTTCAC 57.687 42.857 36.27 11.98 0.00 3.18
432 473 6.573664 TTTTATGGAATCACTTCACTGTGG 57.426 37.500 8.11 0.00 38.40 4.17
464 505 5.748630 CCTCAAGTTAGGCAAGAAACAAAAC 59.251 40.000 0.00 0.00 0.00 2.43
468 509 4.431416 TCCTCAAGTTAGGCAAGAAACA 57.569 40.909 0.00 0.00 36.51 2.83
484 525 3.906218 AGCCATCTACATAGCATTCCTCA 59.094 43.478 0.00 0.00 0.00 3.86
551 592 9.286170 GTACTGTAGAATGTAGATGTCCATCTA 57.714 37.037 11.96 11.96 45.69 1.98
567 608 2.831526 TCAGCATGCCAGTACTGTAGAA 59.168 45.455 21.18 2.10 34.76 2.10
569 610 2.967599 TCAGCATGCCAGTACTGTAG 57.032 50.000 21.18 8.35 34.76 2.74
570 611 3.183793 CATCAGCATGCCAGTACTGTA 57.816 47.619 21.18 10.49 34.76 2.74
571 612 2.034104 CATCAGCATGCCAGTACTGT 57.966 50.000 21.18 0.01 34.76 3.55
581 622 1.179152 TGGAACCAAGCATCAGCATG 58.821 50.000 0.00 0.00 45.49 4.06
582 623 2.154567 ATGGAACCAAGCATCAGCAT 57.845 45.000 0.00 0.00 45.49 3.79
703 750 1.497716 TCTTCCTCGGCATCTAGGGTA 59.502 52.381 0.00 0.00 33.40 3.69
705 752 0.676736 GTCTTCCTCGGCATCTAGGG 59.323 60.000 0.00 0.00 33.40 3.53
782 2006 0.550914 ACATAACACGGCCCATCCAT 59.449 50.000 0.00 0.00 34.01 3.41
792 2016 2.066262 AGGAAGTTCGCACATAACACG 58.934 47.619 0.00 0.00 0.00 4.49
795 2019 2.092211 CGACAGGAAGTTCGCACATAAC 59.908 50.000 0.00 0.00 0.00 1.89
798 2022 0.670546 CCGACAGGAAGTTCGCACAT 60.671 55.000 0.00 0.00 41.02 3.21
840 2064 3.922366 AGGCCTGTTAACAGCCCT 58.078 55.556 28.11 28.11 45.94 5.19
841 2065 1.877576 GCAAGGCCTGTTAACAGCCC 61.878 60.000 29.67 27.65 41.49 5.19
842 2066 0.895559 AGCAAGGCCTGTTAACAGCC 60.896 55.000 27.05 27.49 42.47 4.85
843 2067 0.242017 CAGCAAGGCCTGTTAACAGC 59.758 55.000 27.05 21.34 42.47 4.40
844 2068 1.609208 ACAGCAAGGCCTGTTAACAG 58.391 50.000 25.79 25.79 43.19 3.16
845 2069 3.819245 ACAGCAAGGCCTGTTAACA 57.181 47.368 5.69 8.28 43.19 2.41
851 2075 1.809567 GAACCCAACAGCAAGGCCTG 61.810 60.000 5.69 1.10 38.78 4.85
852 2076 1.531602 GAACCCAACAGCAAGGCCT 60.532 57.895 0.00 0.00 0.00 5.19
853 2077 1.527433 GAGAACCCAACAGCAAGGCC 61.527 60.000 0.00 0.00 0.00 5.19
854 2078 1.856265 CGAGAACCCAACAGCAAGGC 61.856 60.000 0.00 0.00 0.00 4.35
856 2080 0.588252 CACGAGAACCCAACAGCAAG 59.412 55.000 0.00 0.00 0.00 4.01
857 2081 0.107410 ACACGAGAACCCAACAGCAA 60.107 50.000 0.00 0.00 0.00 3.91
858 2082 0.531974 GACACGAGAACCCAACAGCA 60.532 55.000 0.00 0.00 0.00 4.41
859 2083 1.557443 CGACACGAGAACCCAACAGC 61.557 60.000 0.00 0.00 0.00 4.40
860 2084 0.031585 TCGACACGAGAACCCAACAG 59.968 55.000 0.00 0.00 0.00 3.16
862 2086 0.942884 GGTCGACACGAGAACCCAAC 60.943 60.000 18.91 0.00 36.23 3.77
863 2087 1.364901 GGTCGACACGAGAACCCAA 59.635 57.895 18.91 0.00 36.23 4.12
864 2088 2.567497 GGGTCGACACGAGAACCCA 61.567 63.158 18.91 0.00 39.52 4.51
865 2089 0.962356 TAGGGTCGACACGAGAACCC 60.962 60.000 18.91 7.27 46.39 4.11
866 2090 0.450983 CTAGGGTCGACACGAGAACC 59.549 60.000 21.92 9.29 45.59 3.62
867 2091 1.446907 TCTAGGGTCGACACGAGAAC 58.553 55.000 25.81 2.68 36.23 3.01
873 2117 7.784037 TCTATCTATCTATCTAGGGTCGACAC 58.216 42.308 18.91 15.14 0.00 3.67
891 2135 3.859061 TGGAGAAGGTCGCTCTATCTA 57.141 47.619 0.00 0.00 32.98 1.98
892 2136 2.738587 TGGAGAAGGTCGCTCTATCT 57.261 50.000 0.00 0.00 32.98 1.98
895 2139 3.162666 TCTTTTGGAGAAGGTCGCTCTA 58.837 45.455 0.00 0.00 32.98 2.43
896 2140 1.971357 TCTTTTGGAGAAGGTCGCTCT 59.029 47.619 0.00 0.00 32.98 4.09
900 2144 5.751243 TCTTTTTCTTTTGGAGAAGGTCG 57.249 39.130 0.00 0.00 44.80 4.79
901 2145 8.622948 TCTATCTTTTTCTTTTGGAGAAGGTC 57.377 34.615 0.00 0.00 44.80 3.85
906 2150 9.606631 GCTCTATCTATCTTTTTCTTTTGGAGA 57.393 33.333 0.00 0.00 0.00 3.71
907 2151 9.388506 TGCTCTATCTATCTTTTTCTTTTGGAG 57.611 33.333 0.00 0.00 0.00 3.86
908 2152 9.739276 TTGCTCTATCTATCTTTTTCTTTTGGA 57.261 29.630 0.00 0.00 0.00 3.53
912 2156 9.823647 TCGATTGCTCTATCTATCTTTTTCTTT 57.176 29.630 0.00 0.00 0.00 2.52
913 2157 9.474920 CTCGATTGCTCTATCTATCTTTTTCTT 57.525 33.333 0.00 0.00 0.00 2.52
914 2158 7.598493 GCTCGATTGCTCTATCTATCTTTTTCT 59.402 37.037 0.00 0.00 0.00 2.52
915 2159 7.383572 TGCTCGATTGCTCTATCTATCTTTTTC 59.616 37.037 0.00 0.00 0.00 2.29
916 2160 7.212976 TGCTCGATTGCTCTATCTATCTTTTT 58.787 34.615 0.00 0.00 0.00 1.94
917 2161 6.753180 TGCTCGATTGCTCTATCTATCTTTT 58.247 36.000 0.00 0.00 0.00 2.27
918 2162 6.338214 TGCTCGATTGCTCTATCTATCTTT 57.662 37.500 0.00 0.00 0.00 2.52
919 2163 5.973899 TGCTCGATTGCTCTATCTATCTT 57.026 39.130 0.00 0.00 0.00 2.40
920 2164 5.105797 CCTTGCTCGATTGCTCTATCTATCT 60.106 44.000 0.00 0.00 0.00 1.98
921 2165 5.101628 CCTTGCTCGATTGCTCTATCTATC 58.898 45.833 0.00 0.00 0.00 2.08
922 2166 4.081752 CCCTTGCTCGATTGCTCTATCTAT 60.082 45.833 0.00 0.00 0.00 1.98
923 2167 3.256879 CCCTTGCTCGATTGCTCTATCTA 59.743 47.826 0.00 0.00 0.00 1.98
924 2168 2.036992 CCCTTGCTCGATTGCTCTATCT 59.963 50.000 0.00 0.00 0.00 1.98
925 2169 2.411904 CCCTTGCTCGATTGCTCTATC 58.588 52.381 0.00 0.00 0.00 2.08
926 2170 1.542108 GCCCTTGCTCGATTGCTCTAT 60.542 52.381 0.00 0.00 33.53 1.98
927 2171 0.179073 GCCCTTGCTCGATTGCTCTA 60.179 55.000 0.00 0.00 33.53 2.43
928 2172 1.451028 GCCCTTGCTCGATTGCTCT 60.451 57.895 0.00 0.00 33.53 4.09
929 2173 2.817423 CGCCCTTGCTCGATTGCTC 61.817 63.158 0.00 0.00 34.43 4.26
930 2174 2.821366 CGCCCTTGCTCGATTGCT 60.821 61.111 0.00 0.00 34.43 3.91
931 2175 3.880846 CCGCCCTTGCTCGATTGC 61.881 66.667 0.00 0.00 34.43 3.56
932 2176 3.880846 GCCGCCCTTGCTCGATTG 61.881 66.667 0.00 0.00 34.43 2.67
987 2231 2.760799 CCCATGGTACGACGGGGA 60.761 66.667 11.73 0.00 41.49 4.81
989 2233 4.540735 GCCCCATGGTACGACGGG 62.541 72.222 11.73 1.40 38.52 5.28
994 2238 2.514592 CAGCAGCCCCATGGTACG 60.515 66.667 11.73 0.00 0.00 3.67
1014 2258 3.482783 GACACGAGGCGCTTGAGC 61.483 66.667 7.64 0.00 37.78 4.26
1015 2259 2.811317 GGACACGAGGCGCTTGAG 60.811 66.667 7.64 0.00 0.00 3.02
1016 2260 4.717629 CGGACACGAGGCGCTTGA 62.718 66.667 7.64 0.00 44.60 3.02
1037 2281 2.579738 GAGTCTTCCGGTCCTGCC 59.420 66.667 0.00 0.00 0.00 4.85
1038 2282 1.668101 ATCGAGTCTTCCGGTCCTGC 61.668 60.000 0.00 0.00 0.00 4.85
1039 2283 0.382515 GATCGAGTCTTCCGGTCCTG 59.617 60.000 0.00 0.00 31.48 3.86
1040 2284 2.796500 GATCGAGTCTTCCGGTCCT 58.204 57.895 0.00 0.00 31.48 3.85
1042 2286 1.734748 GGGATCGAGTCTTCCGGTC 59.265 63.158 0.00 0.00 36.50 4.79
1043 2287 2.119655 CGGGATCGAGTCTTCCGGT 61.120 63.158 0.00 0.00 39.00 5.28
1044 2288 1.664321 AACGGGATCGAGTCTTCCGG 61.664 60.000 9.00 8.66 44.36 5.14
1045 2289 0.525668 CAACGGGATCGAGTCTTCCG 60.526 60.000 2.61 2.61 45.42 4.30
1046 2290 0.531200 ACAACGGGATCGAGTCTTCC 59.469 55.000 0.00 0.00 40.11 3.46
1047 2291 1.630148 CACAACGGGATCGAGTCTTC 58.370 55.000 0.00 0.00 40.11 2.87
1048 2292 0.246635 CCACAACGGGATCGAGTCTT 59.753 55.000 0.00 0.00 40.11 3.01
1049 2293 0.898789 ACCACAACGGGATCGAGTCT 60.899 55.000 0.00 0.00 40.22 3.24
1053 2297 0.108520 GCTTACCACAACGGGATCGA 60.109 55.000 0.00 0.00 40.22 3.59
1063 2307 3.605749 GAGGCGGCAGCTTACCACA 62.606 63.158 13.08 0.00 44.37 4.17
1099 2343 0.723981 GCACAAGATCAGAACGGAGC 59.276 55.000 0.00 0.00 0.00 4.70
1102 2346 2.662791 CGTTTGCACAAGATCAGAACGG 60.663 50.000 6.62 0.00 35.93 4.44
1123 2367 0.608640 ACCATCTCGAACAGGGACAC 59.391 55.000 1.88 0.00 27.95 3.67
1126 2370 2.100197 CAGTACCATCTCGAACAGGGA 58.900 52.381 1.88 0.00 0.00 4.20
1134 2378 4.148871 CACGCATTATTCAGTACCATCTCG 59.851 45.833 0.00 0.00 0.00 4.04
1171 2415 8.465999 ACATTGACATAAGTTGACAAGAAAACA 58.534 29.630 0.00 0.00 41.94 2.83
1227 2471 2.867333 ATCGACGTACCTGCAGCACG 62.867 60.000 27.47 27.47 41.32 5.34
1269 2513 1.891919 GTTGTTGACAGGGCGAGCA 60.892 57.895 0.00 0.00 0.00 4.26
1296 2540 0.035317 TTGGCAGCTTGATGACGAGT 59.965 50.000 0.00 0.00 0.00 4.18
1310 3064 2.034066 CGCCTCCTCCTTTTGGCA 59.966 61.111 0.00 0.00 45.13 4.92
1311 3065 3.443925 GCGCCTCCTCCTTTTGGC 61.444 66.667 0.00 0.00 41.76 4.52
1463 3423 7.618137 TCTAGTTGGGAATACAGTAAGAAACC 58.382 38.462 0.00 0.00 0.00 3.27
1471 3431 4.965532 AGATGCTCTAGTTGGGAATACAGT 59.034 41.667 0.00 0.00 0.00 3.55
1472 3432 5.543507 AGATGCTCTAGTTGGGAATACAG 57.456 43.478 0.00 0.00 0.00 2.74
1474 3434 9.593134 CATAATAGATGCTCTAGTTGGGAATAC 57.407 37.037 0.00 0.00 31.67 1.89
1475 3435 8.260818 GCATAATAGATGCTCTAGTTGGGAATA 58.739 37.037 2.29 0.00 41.52 1.75
1476 3436 7.108847 GCATAATAGATGCTCTAGTTGGGAAT 58.891 38.462 2.29 0.00 41.52 3.01
1477 3437 6.467677 GCATAATAGATGCTCTAGTTGGGAA 58.532 40.000 2.29 0.00 41.52 3.97
1478 3438 6.042638 GCATAATAGATGCTCTAGTTGGGA 57.957 41.667 2.29 0.00 41.52 4.37
1503 3463 9.892130 CCTGTTATTCTTTACTTGTTCCTAGAT 57.108 33.333 0.00 0.00 0.00 1.98
1508 3468 7.506328 ACACCTGTTATTCTTTACTTGTTCC 57.494 36.000 0.00 0.00 0.00 3.62
1509 3469 9.797556 AAAACACCTGTTATTCTTTACTTGTTC 57.202 29.630 0.00 0.00 37.25 3.18
1533 3493 4.199432 AGTTGGCAATCACACACAAAAA 57.801 36.364 1.92 0.00 0.00 1.94
1535 3495 4.991153 TTAGTTGGCAATCACACACAAA 57.009 36.364 1.92 0.00 0.00 2.83
1543 3520 4.397420 ACAGTGTCATTAGTTGGCAATCA 58.603 39.130 1.92 0.00 42.79 2.57
1544 3521 4.436050 CGACAGTGTCATTAGTTGGCAATC 60.436 45.833 22.66 0.00 42.79 2.67
1554 3531 2.027561 CCTTTCCCCGACAGTGTCATTA 60.028 50.000 22.66 2.54 32.09 1.90
1556 3533 0.324943 CCTTTCCCCGACAGTGTCAT 59.675 55.000 22.66 0.00 32.09 3.06
1575 3552 9.167311 ACATTAAGAATTACATGGAGAAGTGTC 57.833 33.333 0.00 0.00 0.00 3.67
1585 3562 9.607988 TGTGGTAGGTACATTAAGAATTACATG 57.392 33.333 0.00 0.00 0.00 3.21
1631 3608 5.421056 AGGACGATATGGAAGTTGAGTAACA 59.579 40.000 0.00 0.00 39.30 2.41
1665 3688 0.102481 GCGAGCCGATCCTTCAACTA 59.898 55.000 0.00 0.00 0.00 2.24
1703 3726 3.576982 ACACACGAATGGGAGAAGAGTTA 59.423 43.478 0.00 0.00 31.57 2.24
1808 3831 0.535102 AAGGCGTGTCCAGGAACTTG 60.535 55.000 0.00 0.00 34.60 3.16
1826 3849 1.217916 TGTGAAGGTGAGGTTGGGAA 58.782 50.000 0.00 0.00 0.00 3.97
1946 3969 2.880890 AGCTTGAATGTCTTCACACCAC 59.119 45.455 0.00 0.00 41.05 4.16
2063 4086 9.710818 AAGACCAGAGAAAGTAGTATACCATTA 57.289 33.333 0.00 0.00 44.47 1.90
2178 4209 3.277142 ACCTCCACAATACCCGAATTC 57.723 47.619 0.00 0.00 0.00 2.17
2206 4237 6.753180 ACTGTCATATATGCGAACTCATCTT 58.247 36.000 7.92 0.00 0.00 2.40
2211 4242 8.187480 AGATCATACTGTCATATATGCGAACTC 58.813 37.037 7.92 0.00 0.00 3.01
2284 4315 2.397751 CGTAGCATGGCCCTTGAAG 58.602 57.895 0.00 0.00 0.00 3.02
2376 4407 5.523552 CGTGTTGCAATAATAGAGGATGACA 59.476 40.000 0.59 0.00 0.00 3.58
2380 4411 4.389374 CCCGTGTTGCAATAATAGAGGAT 58.611 43.478 0.59 0.00 0.00 3.24
2399 4430 0.247185 ATTTTCTGCAACATGGCCCG 59.753 50.000 0.00 0.00 0.00 6.13
2430 4461 1.408969 AATTTTCCACAACACGGCCT 58.591 45.000 0.00 0.00 0.00 5.19
2431 4462 2.131972 GAAATTTTCCACAACACGGCC 58.868 47.619 0.00 0.00 0.00 6.13
2432 4463 2.794350 CAGAAATTTTCCACAACACGGC 59.206 45.455 5.52 0.00 0.00 5.68
2433 4464 2.794350 GCAGAAATTTTCCACAACACGG 59.206 45.455 5.52 0.00 0.00 4.94
2434 4465 3.443037 TGCAGAAATTTTCCACAACACG 58.557 40.909 5.52 0.00 0.00 4.49
2435 4466 4.629200 TGTTGCAGAAATTTTCCACAACAC 59.371 37.500 27.15 14.73 44.30 3.32
2436 4467 4.629200 GTGTTGCAGAAATTTTCCACAACA 59.371 37.500 27.15 27.15 45.64 3.33
2437 4468 4.259770 CGTGTTGCAGAAATTTTCCACAAC 60.260 41.667 24.28 24.28 42.09 3.32
2438 4469 3.862267 CGTGTTGCAGAAATTTTCCACAA 59.138 39.130 5.52 7.71 0.00 3.33
2439 4470 3.443037 CGTGTTGCAGAAATTTTCCACA 58.557 40.909 5.52 2.03 0.00 4.17
2440 4471 2.794350 CCGTGTTGCAGAAATTTTCCAC 59.206 45.455 5.52 5.67 0.00 4.02
2441 4472 2.223923 CCCGTGTTGCAGAAATTTTCCA 60.224 45.455 5.52 0.00 0.00 3.53
2442 4473 2.223947 ACCCGTGTTGCAGAAATTTTCC 60.224 45.455 5.52 0.00 0.00 3.13
2443 4474 3.049912 GACCCGTGTTGCAGAAATTTTC 58.950 45.455 0.66 0.66 0.00 2.29
2444 4475 2.428890 TGACCCGTGTTGCAGAAATTTT 59.571 40.909 0.00 0.00 0.00 1.82
2445 4476 2.028130 TGACCCGTGTTGCAGAAATTT 58.972 42.857 0.00 0.00 0.00 1.82
2446 4477 1.686355 TGACCCGTGTTGCAGAAATT 58.314 45.000 0.00 0.00 0.00 1.82
2447 4478 1.541147 CATGACCCGTGTTGCAGAAAT 59.459 47.619 0.00 0.00 0.00 2.17
2448 4479 0.950836 CATGACCCGTGTTGCAGAAA 59.049 50.000 0.00 0.00 0.00 2.52
2449 4480 0.179032 ACATGACCCGTGTTGCAGAA 60.179 50.000 0.00 0.00 28.11 3.02
2450 4481 0.179032 AACATGACCCGTGTTGCAGA 60.179 50.000 0.00 0.00 41.32 4.26
2451 4482 1.196808 GTAACATGACCCGTGTTGCAG 59.803 52.381 13.11 0.00 42.56 4.41
2452 4483 1.231221 GTAACATGACCCGTGTTGCA 58.769 50.000 13.11 0.00 42.56 4.08
2453 4484 0.165079 CGTAACATGACCCGTGTTGC 59.835 55.000 13.11 11.08 42.56 4.17
2454 4485 0.793861 CCGTAACATGACCCGTGTTG 59.206 55.000 13.11 0.24 42.56 3.33
2455 4486 0.680618 TCCGTAACATGACCCGTGTT 59.319 50.000 0.00 9.19 44.42 3.32
2456 4487 0.680618 TTCCGTAACATGACCCGTGT 59.319 50.000 0.00 0.00 34.83 4.49
2457 4488 1.798283 TTTCCGTAACATGACCCGTG 58.202 50.000 0.00 0.00 0.00 4.94
2458 4489 2.773993 ATTTCCGTAACATGACCCGT 57.226 45.000 0.00 0.00 0.00 5.28
2459 4490 4.428615 AAAATTTCCGTAACATGACCCG 57.571 40.909 0.00 0.00 0.00 5.28
2513 4544 2.480224 CAACAAGACCTGTGTTGCAG 57.520 50.000 7.04 0.00 46.63 4.41
2519 4550 8.761575 ATAATTATTTTGCAACAAGACCTGTG 57.238 30.769 0.00 0.00 38.67 3.66
2615 4647 7.060174 GCAAAATAAATCTGCAACAAAATGCTG 59.940 33.333 0.67 0.53 46.54 4.41
2659 4691 7.749126 CGAGTGTTGTTTTGTAGAAATAATCCC 59.251 37.037 0.00 0.00 0.00 3.85
2685 4717 1.922545 GGCACGATTTGACTACCGTAC 59.077 52.381 0.00 0.00 33.62 3.67
2688 4720 1.393539 CTTGGCACGATTTGACTACCG 59.606 52.381 0.00 0.00 32.31 4.02
2700 4732 1.522258 GTTGTTGCAAATCTTGGCACG 59.478 47.619 0.00 0.00 40.23 5.34
2701 4733 1.866601 GGTTGTTGCAAATCTTGGCAC 59.133 47.619 0.00 0.00 40.23 5.01
2702 4734 1.202627 GGGTTGTTGCAAATCTTGGCA 60.203 47.619 0.00 0.00 38.46 4.92
2746 4779 1.159285 CTCAGCACGAAGGCATTTGA 58.841 50.000 5.12 0.00 35.83 2.69
2789 4822 1.299976 GTCCCTTTCCAGGTCGCAT 59.700 57.895 0.00 0.00 38.79 4.73
2822 4855 2.008400 TCCCTCACCCTCTCCTCTAAA 58.992 52.381 0.00 0.00 0.00 1.85
2836 4869 1.568597 CTTCCTCTCTCTCCTCCCTCA 59.431 57.143 0.00 0.00 0.00 3.86
2854 4887 6.086011 TCTTCTTCTACATCTCCTCCTCTT 57.914 41.667 0.00 0.00 0.00 2.85
2855 4888 5.399038 CCTCTTCTTCTACATCTCCTCCTCT 60.399 48.000 0.00 0.00 0.00 3.69
2911 4944 2.753043 CACCATGCTCCTGCCACC 60.753 66.667 0.00 0.00 38.71 4.61
2942 4975 1.079819 TTCTTCTTCTCCGCGGCTG 60.080 57.895 23.51 16.18 0.00 4.85
2958 4991 6.325286 ACATCCTTATCTTCTCCCTGTACTTC 59.675 42.308 0.00 0.00 0.00 3.01
2989 5022 4.899457 TCCTTGTCTCCAGAAAAGTCTACA 59.101 41.667 5.89 0.00 37.62 2.74
3002 5035 2.103941 CAGGCCTTATCTCCTTGTCTCC 59.896 54.545 0.00 0.00 0.00 3.71
3038 5071 2.820037 GCCTTCTACGCTGGCCAC 60.820 66.667 0.00 0.00 40.71 5.01
3085 5118 4.123497 AGTTTGGGAAAAGCTTGTGTTC 57.877 40.909 0.00 0.00 0.00 3.18
3107 5140 8.908786 AGACAAGAATAGAGTCAAACATTTGA 57.091 30.769 2.89 2.89 44.31 2.69
3304 5337 2.949644 GTCCACCTTAAACAGTTGCAGT 59.050 45.455 0.00 0.00 0.00 4.40
3591 5624 8.218338 AGCATAATGAACAAGGTTAGATTCAG 57.782 34.615 0.00 0.00 34.71 3.02
3622 5655 2.171659 TGGCATAATGGACGGAAGCTTA 59.828 45.455 0.00 0.00 0.00 3.09
3799 5840 5.296780 CAGGTAAGATTGGCGTATTGAACAT 59.703 40.000 0.00 0.00 0.00 2.71
3939 5980 4.202151 ACAGCCAAGACAAAATTCTCCAAC 60.202 41.667 0.00 0.00 0.00 3.77
4035 6076 2.665165 ACCTGTGTGCATTGGAAGAAA 58.335 42.857 0.00 0.00 0.00 2.52
4134 6175 5.359756 CCCTTGATCGTCACATTCTTGATA 58.640 41.667 0.00 0.00 0.00 2.15
4252 6293 3.557228 ATCAAGGTCTTCAGAGCCATC 57.443 47.619 2.33 0.00 43.11 3.51
4324 6365 0.666913 TAGCCTTCGTCGAGCATACC 59.333 55.000 8.91 0.00 0.00 2.73
4411 6452 1.079819 GACGGCTGCTGAGCTTGTA 60.080 57.895 16.72 0.00 45.44 2.41
4455 6496 9.267071 TGCTAGGATAGATAATTGGCATAACTA 57.733 33.333 0.00 0.00 42.77 2.24
4471 6512 6.852853 CGCAACATTTAACATTGCTAGGATAG 59.147 38.462 12.98 0.00 45.22 2.08
4475 6516 4.732784 ACGCAACATTTAACATTGCTAGG 58.267 39.130 12.98 3.91 45.22 3.02
4478 6519 4.615949 TCAACGCAACATTTAACATTGCT 58.384 34.783 12.98 1.97 45.22 3.91
4480 6521 6.145209 TCCAATCAACGCAACATTTAACATTG 59.855 34.615 0.00 0.00 0.00 2.82
4591 6632 5.690409 ACTATTACACAACAGAACACTCACG 59.310 40.000 0.00 0.00 0.00 4.35
4634 6675 6.276847 AGTAGTAGCATATTCACAGCTTGAC 58.723 40.000 0.00 0.00 39.68 3.18
4668 6711 6.647067 GTCTGAAGCTCTGTTTACACTATGTT 59.353 38.462 0.00 0.00 0.00 2.71
4669 6712 6.159988 GTCTGAAGCTCTGTTTACACTATGT 58.840 40.000 0.00 0.00 0.00 2.29
4670 6713 6.090088 GTGTCTGAAGCTCTGTTTACACTATG 59.910 42.308 8.78 0.00 34.58 2.23
4671 6714 6.159988 GTGTCTGAAGCTCTGTTTACACTAT 58.840 40.000 8.78 0.00 34.58 2.12
4672 6715 5.529791 GTGTCTGAAGCTCTGTTTACACTA 58.470 41.667 8.78 0.00 34.58 2.74
4673 6716 4.372656 GTGTCTGAAGCTCTGTTTACACT 58.627 43.478 8.78 0.00 34.58 3.55
4674 6717 3.182572 CGTGTCTGAAGCTCTGTTTACAC 59.817 47.826 0.00 0.00 34.18 2.90
4675 6718 3.381045 CGTGTCTGAAGCTCTGTTTACA 58.619 45.455 0.00 0.00 0.00 2.41
4676 6719 2.731976 CCGTGTCTGAAGCTCTGTTTAC 59.268 50.000 0.00 0.00 0.00 2.01
4677 6720 2.288825 CCCGTGTCTGAAGCTCTGTTTA 60.289 50.000 0.00 0.00 0.00 2.01
4678 6721 1.541233 CCCGTGTCTGAAGCTCTGTTT 60.541 52.381 0.00 0.00 0.00 2.83
4725 6768 2.477375 GTGCGTACTCGAACCATGAAAA 59.523 45.455 0.00 0.00 39.51 2.29
4785 6828 4.441495 CCTGTGCTATGGTCGTCTTCATAA 60.441 45.833 0.00 0.00 0.00 1.90
4870 7395 5.488919 TCAGATCTAAGGGTGTCTTTTCCAT 59.511 40.000 0.00 0.00 36.93 3.41
4872 7397 5.422214 TCAGATCTAAGGGTGTCTTTTCC 57.578 43.478 0.00 0.00 36.93 3.13
4910 7608 8.487970 CGATTATACTCGCTATTGTTTTCATGT 58.512 33.333 0.00 0.00 0.00 3.21
4911 7609 8.699749 TCGATTATACTCGCTATTGTTTTCATG 58.300 33.333 7.56 0.00 38.52 3.07
4913 7611 7.703197 TGTCGATTATACTCGCTATTGTTTTCA 59.297 33.333 7.56 0.00 38.52 2.69
4914 7612 8.057812 TGTCGATTATACTCGCTATTGTTTTC 57.942 34.615 7.56 0.00 38.52 2.29
4916 7614 7.378995 GTCTGTCGATTATACTCGCTATTGTTT 59.621 37.037 7.56 0.00 38.52 2.83
4917 7615 6.856938 GTCTGTCGATTATACTCGCTATTGTT 59.143 38.462 7.56 0.00 38.52 2.83
4918 7616 6.017357 TGTCTGTCGATTATACTCGCTATTGT 60.017 38.462 7.56 0.00 38.52 2.71
4921 7619 6.555812 TTGTCTGTCGATTATACTCGCTAT 57.444 37.500 7.56 0.00 38.52 2.97
4922 7620 5.996669 TTGTCTGTCGATTATACTCGCTA 57.003 39.130 7.56 0.00 38.52 4.26
4923 7621 4.895224 TTGTCTGTCGATTATACTCGCT 57.105 40.909 7.56 0.00 38.52 4.93
4924 7622 4.086227 CGTTTGTCTGTCGATTATACTCGC 60.086 45.833 7.56 4.29 38.52 5.03
4925 7623 5.260900 TCGTTTGTCTGTCGATTATACTCG 58.739 41.667 6.16 6.16 39.99 4.18
4935 7905 3.852471 TTGTTGATCGTTTGTCTGTCG 57.148 42.857 0.00 0.00 0.00 4.35
4958 7928 9.717942 GAGGCTAGTATGATTCTCAATGTATTT 57.282 33.333 0.00 0.00 0.00 1.40
4959 7929 8.317679 GGAGGCTAGTATGATTCTCAATGTATT 58.682 37.037 0.00 0.00 0.00 1.89
4960 7930 7.677745 AGGAGGCTAGTATGATTCTCAATGTAT 59.322 37.037 0.00 0.00 0.00 2.29
4961 7931 7.013220 AGGAGGCTAGTATGATTCTCAATGTA 58.987 38.462 0.00 0.00 0.00 2.29
4962 7932 5.843421 AGGAGGCTAGTATGATTCTCAATGT 59.157 40.000 0.00 0.00 0.00 2.71
4963 7933 6.357579 AGGAGGCTAGTATGATTCTCAATG 57.642 41.667 0.00 0.00 0.00 2.82
4964 7934 6.786959 AGAAGGAGGCTAGTATGATTCTCAAT 59.213 38.462 0.00 0.00 0.00 2.57
4965 7935 6.139671 AGAAGGAGGCTAGTATGATTCTCAA 58.860 40.000 0.00 0.00 0.00 3.02
4966 7936 5.710646 AGAAGGAGGCTAGTATGATTCTCA 58.289 41.667 0.00 0.00 0.00 3.27
4967 7937 6.295067 GGAAGAAGGAGGCTAGTATGATTCTC 60.295 46.154 0.00 0.00 0.00 2.87
4968 7938 5.542251 GGAAGAAGGAGGCTAGTATGATTCT 59.458 44.000 0.00 0.00 0.00 2.40
4969 7939 5.542251 AGGAAGAAGGAGGCTAGTATGATTC 59.458 44.000 0.00 0.00 0.00 2.52
4984 7954 3.944015 CAGTGCAAATAGGAGGAAGAAGG 59.056 47.826 0.00 0.00 0.00 3.46
5000 7970 4.338118 CCTTTTTCTTTACTGTCCAGTGCA 59.662 41.667 10.15 0.00 42.52 4.57
5001 7971 4.261614 CCCTTTTTCTTTACTGTCCAGTGC 60.262 45.833 10.15 0.00 42.52 4.40
5002 7972 5.008712 GTCCCTTTTTCTTTACTGTCCAGTG 59.991 44.000 10.15 0.00 42.52 3.66
5006 7976 6.004574 AGATGTCCCTTTTTCTTTACTGTCC 58.995 40.000 0.00 0.00 0.00 4.02
5017 7987 3.321968 GGTCTTTGCAGATGTCCCTTTTT 59.678 43.478 0.00 0.00 0.00 1.94
5064 8035 0.537188 AGGGGCGAGTGACTATTGTG 59.463 55.000 0.00 0.00 0.00 3.33
5065 8036 1.066143 CAAGGGGCGAGTGACTATTGT 60.066 52.381 0.00 0.00 0.00 2.71
5080 8051 5.508825 CCATTTCTAGATCTCGTCTCAAGGG 60.509 48.000 0.00 0.00 38.42 3.95
5098 8069 2.523015 CGATGTTGCTTCAGCCATTTC 58.477 47.619 0.00 0.00 41.18 2.17
5118 8089 4.841441 TTGGGTGATGCTCCAACC 57.159 55.556 6.11 6.11 44.13 3.77
5132 8103 0.512952 GCAAGTCTGTACTGCGTTGG 59.487 55.000 12.58 0.00 35.62 3.77
5140 8111 3.375299 GGTGATGGATTGCAAGTCTGTAC 59.625 47.826 4.94 0.31 0.00 2.90
5145 8116 1.474077 GGTGGTGATGGATTGCAAGTC 59.526 52.381 4.94 2.88 0.00 3.01
5156 8127 0.881118 CCTTTGAACGGGTGGTGATG 59.119 55.000 0.00 0.00 0.00 3.07
5166 8137 5.987347 TCTAGTTTCTACAACCCTTTGAACG 59.013 40.000 0.00 0.00 36.48 3.95
5172 8143 5.803470 GCATGGTCTAGTTTCTACAACCCTT 60.803 44.000 0.00 0.00 0.00 3.95
5185 8156 0.108138 GTTCTGCGGCATGGTCTAGT 60.108 55.000 1.75 0.00 0.00 2.57
5198 8169 4.217118 ACATCTTCTTCCATGTTGTTCTGC 59.783 41.667 0.00 0.00 28.27 4.26
5209 8180 4.380531 GGCGATTATGACATCTTCTTCCA 58.619 43.478 0.00 0.00 0.00 3.53
5211 8182 3.120854 GCGGCGATTATGACATCTTCTTC 60.121 47.826 12.98 0.00 0.00 2.87
5221 8192 2.412870 CTATTGGTGCGGCGATTATGA 58.587 47.619 12.98 0.00 0.00 2.15
5226 8197 2.591715 GGCTATTGGTGCGGCGAT 60.592 61.111 12.98 0.00 0.00 4.58
5230 8201 3.211963 GGCTGGCTATTGGTGCGG 61.212 66.667 0.00 0.00 0.00 5.69
5271 8242 4.785301 TCCTTTTAGATCTTGGCAGATGG 58.215 43.478 0.00 0.00 40.14 3.51
5301 8272 2.711009 TGAGAGTTTGTGTCCCCAGATT 59.289 45.455 0.00 0.00 0.00 2.40
5334 8305 2.279120 GTCTGATCTGGCTCCGCG 60.279 66.667 0.00 0.00 0.00 6.46
5336 8307 0.749049 TGATGTCTGATCTGGCTCCG 59.251 55.000 5.76 0.00 0.00 4.63
5337 8308 2.485124 CCTTGATGTCTGATCTGGCTCC 60.485 54.545 5.76 0.00 0.00 4.70
5338 8309 2.170187 ACCTTGATGTCTGATCTGGCTC 59.830 50.000 5.76 2.05 0.00 4.70
5339 8310 2.194859 ACCTTGATGTCTGATCTGGCT 58.805 47.619 5.76 0.00 0.00 4.75
5343 8314 3.378512 TGCCTACCTTGATGTCTGATCT 58.621 45.455 0.00 0.00 0.00 2.75
5348 8319 3.307762 GGTCTTTGCCTACCTTGATGTCT 60.308 47.826 0.00 0.00 32.72 3.41
5355 8326 2.569404 CTCTCTGGTCTTTGCCTACCTT 59.431 50.000 0.00 0.00 36.67 3.50
5365 8336 4.689062 TGGAATAAGGTCTCTCTGGTCTT 58.311 43.478 0.00 0.00 0.00 3.01
5372 8343 4.174762 GACGTGTTGGAATAAGGTCTCTC 58.825 47.826 0.00 0.00 0.00 3.20
5393 8364 1.450134 GATGTGGTGGCAGCGATGA 60.450 57.895 4.02 0.00 0.00 2.92
5412 8383 1.847999 TGTTTTCTTGACGACGTCGAC 59.152 47.619 41.52 34.87 43.02 4.20
5433 8404 9.382244 CGTCTTGTTTTCTATTTCTTAGGTTTG 57.618 33.333 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.