Multiple sequence alignment - TraesCS5D01G271900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G271900 chr5D 100.000 4133 0 0 1 4133 375313368 375309236 0.000000e+00 7633
1 TraesCS5D01G271900 chr5A 90.756 3202 159 56 711 3844 476670136 476667004 0.000000e+00 4146
2 TraesCS5D01G271900 chr5A 83.273 275 24 17 3868 4127 476666930 476666663 2.480000e-57 233
3 TraesCS5D01G271900 chr5A 81.140 228 39 2 305 532 476672561 476672338 3.280000e-41 180
4 TraesCS5D01G271900 chr5B 89.004 1546 103 28 2346 3844 448131343 448129818 0.000000e+00 1851
5 TraesCS5D01G271900 chr5B 90.761 985 71 12 711 1686 448133090 448132117 0.000000e+00 1297
6 TraesCS5D01G271900 chr5B 93.154 409 25 2 1951 2358 448131924 448131518 7.650000e-167 597
7 TraesCS5D01G271900 chr5B 95.620 137 2 3 4000 4133 448129547 448129412 2.500000e-52 217
8 TraesCS5D01G271900 chr3D 88.403 595 57 9 974 1567 502125561 502126144 0.000000e+00 706
9 TraesCS5D01G271900 chr3D 89.749 517 53 0 2635 3151 502126664 502127180 0.000000e+00 662
10 TraesCS5D01G271900 chr3D 87.640 356 44 0 1959 2314 502126202 502126557 8.270000e-112 414
11 TraesCS5D01G271900 chr3A 88.067 595 58 10 991 1584 641558055 641558637 0.000000e+00 693
12 TraesCS5D01G271900 chr3A 88.743 533 58 2 2620 3151 641559120 641559651 0.000000e+00 651
13 TraesCS5D01G271900 chr3A 87.360 356 45 0 1959 2314 641558679 641559034 3.850000e-110 409
14 TraesCS5D01G271900 chr3B 87.430 533 67 0 2619 3151 663408494 663409026 7.590000e-172 614
15 TraesCS5D01G271900 chr3B 86.492 533 70 1 2619 3151 663335474 663336004 5.950000e-163 584
16 TraesCS5D01G271900 chr3B 84.272 515 74 5 1033 1546 663364047 663364555 2.870000e-136 496
17 TraesCS5D01G271900 chr3B 83.398 512 75 8 1037 1546 663291229 663291732 2.250000e-127 466


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G271900 chr5D 375309236 375313368 4132 True 7633.000000 7633 100.000000 1 4133 1 chr5D.!!$R1 4132
1 TraesCS5D01G271900 chr5A 476666663 476672561 5898 True 1519.666667 4146 85.056333 305 4127 3 chr5A.!!$R1 3822
2 TraesCS5D01G271900 chr5B 448129412 448133090 3678 True 990.500000 1851 92.134750 711 4133 4 chr5B.!!$R1 3422
3 TraesCS5D01G271900 chr3D 502125561 502127180 1619 False 594.000000 706 88.597333 974 3151 3 chr3D.!!$F1 2177
4 TraesCS5D01G271900 chr3A 641558055 641559651 1596 False 584.333333 693 88.056667 991 3151 3 chr3A.!!$F1 2160
5 TraesCS5D01G271900 chr3B 663408494 663409026 532 False 614.000000 614 87.430000 2619 3151 1 chr3B.!!$F4 532
6 TraesCS5D01G271900 chr3B 663335474 663336004 530 False 584.000000 584 86.492000 2619 3151 1 chr3B.!!$F2 532
7 TraesCS5D01G271900 chr3B 663364047 663364555 508 False 496.000000 496 84.272000 1033 1546 1 chr3B.!!$F3 513
8 TraesCS5D01G271900 chr3B 663291229 663291732 503 False 466.000000 466 83.398000 1037 1546 1 chr3B.!!$F1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 206 0.030908 GATCGAGGGAACTAGTGGCG 59.969 60.0 0.0 0.0 44.43 5.69 F
226 227 0.034960 CTGGGGAGTCGAGTGAGAGA 60.035 60.0 0.0 0.0 0.00 3.10 F
643 644 0.107848 CGGCTTCCATAAGAACGGGT 60.108 55.0 0.0 0.0 34.37 5.28 F
1720 3883 0.250467 AGAAGCACACACATTCGCCT 60.250 50.0 0.0 0.0 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 3827 0.110056 GCTGAAGGCGAATGTGTGTG 60.110 55.000 0.00 0.00 0.00 3.82 R
1755 3918 1.687628 GTTCTGTCTCGAGTGAACCG 58.312 55.000 24.12 10.84 34.47 4.44 R
2451 4805 2.366972 TTGGCCTAGGAGGGGAGC 60.367 66.667 14.75 0.00 35.37 4.70 R
3342 5717 0.179018 AACACAGCCAAGACAGGGAC 60.179 55.000 0.00 0.00 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.823460 GAGGAAGAGGAGCTCACCAG 59.177 60.000 17.19 0.00 33.91 4.00
20 21 0.411452 AGGAAGAGGAGCTCACCAGA 59.589 55.000 17.19 0.00 33.91 3.86
21 22 0.823460 GGAAGAGGAGCTCACCAGAG 59.177 60.000 17.19 0.00 44.96 3.35
22 23 1.618345 GGAAGAGGAGCTCACCAGAGA 60.618 57.143 17.19 0.00 44.98 3.10
23 24 1.750778 GAAGAGGAGCTCACCAGAGAG 59.249 57.143 17.19 0.00 44.98 3.20
29 30 2.363018 CTCACCAGAGAGCGGGGA 60.363 66.667 0.00 0.00 44.98 4.81
30 31 2.363018 TCACCAGAGAGCGGGGAG 60.363 66.667 0.00 0.00 30.47 4.30
31 32 3.465403 CACCAGAGAGCGGGGAGG 61.465 72.222 0.00 0.00 33.18 4.30
32 33 4.787280 ACCAGAGAGCGGGGAGGG 62.787 72.222 0.00 0.00 33.18 4.30
33 34 4.465446 CCAGAGAGCGGGGAGGGA 62.465 72.222 0.00 0.00 0.00 4.20
34 35 2.123077 CAGAGAGCGGGGAGGGAT 60.123 66.667 0.00 0.00 0.00 3.85
35 36 2.123077 AGAGAGCGGGGAGGGATG 60.123 66.667 0.00 0.00 0.00 3.51
36 37 2.123251 GAGAGCGGGGAGGGATGA 60.123 66.667 0.00 0.00 0.00 2.92
37 38 2.123077 AGAGCGGGGAGGGATGAG 60.123 66.667 0.00 0.00 0.00 2.90
38 39 2.123251 GAGCGGGGAGGGATGAGA 60.123 66.667 0.00 0.00 0.00 3.27
39 40 2.444895 AGCGGGGAGGGATGAGAC 60.445 66.667 0.00 0.00 0.00 3.36
40 41 3.917760 GCGGGGAGGGATGAGACG 61.918 72.222 0.00 0.00 0.00 4.18
41 42 3.227276 CGGGGAGGGATGAGACGG 61.227 72.222 0.00 0.00 0.00 4.79
42 43 3.551407 GGGGAGGGATGAGACGGC 61.551 72.222 0.00 0.00 0.00 5.68
43 44 3.551407 GGGAGGGATGAGACGGCC 61.551 72.222 0.00 0.00 0.00 6.13
44 45 2.444895 GGAGGGATGAGACGGCCT 60.445 66.667 0.00 0.00 0.00 5.19
45 46 2.503382 GGAGGGATGAGACGGCCTC 61.503 68.421 0.00 0.00 42.30 4.70
52 53 4.900154 GAGACGGCCTCAAGTGAG 57.100 61.111 0.00 1.05 41.58 3.51
53 54 1.446966 GAGACGGCCTCAAGTGAGC 60.447 63.158 0.00 0.00 41.58 4.26
54 55 1.882989 GAGACGGCCTCAAGTGAGCT 61.883 60.000 0.00 0.00 41.58 4.09
55 56 1.446966 GACGGCCTCAAGTGAGCTC 60.447 63.158 6.82 6.82 40.75 4.09
56 57 2.159819 GACGGCCTCAAGTGAGCTCA 62.160 60.000 13.74 13.74 40.75 4.26
57 58 1.220206 CGGCCTCAAGTGAGCTCAT 59.780 57.895 21.47 0.83 40.75 2.90
58 59 1.088340 CGGCCTCAAGTGAGCTCATG 61.088 60.000 21.47 15.35 40.75 3.07
59 60 1.375098 GGCCTCAAGTGAGCTCATGC 61.375 60.000 21.47 14.75 40.75 4.06
60 61 1.703438 GCCTCAAGTGAGCTCATGCG 61.703 60.000 21.47 9.97 45.42 4.73
61 62 0.108472 CCTCAAGTGAGCTCATGCGA 60.108 55.000 21.47 14.74 45.42 5.10
62 63 1.279152 CTCAAGTGAGCTCATGCGAG 58.721 55.000 21.47 19.81 45.42 5.03
63 64 0.108472 TCAAGTGAGCTCATGCGAGG 60.108 55.000 21.47 7.03 45.42 4.63
64 65 1.088340 CAAGTGAGCTCATGCGAGGG 61.088 60.000 21.47 2.05 45.42 4.30
65 66 2.866085 AAGTGAGCTCATGCGAGGGC 62.866 60.000 21.47 3.98 45.42 5.19
81 82 4.704833 GCAGGGCGAGCTCCAACA 62.705 66.667 8.47 0.00 0.00 3.33
82 83 2.032528 CAGGGCGAGCTCCAACAA 59.967 61.111 8.47 0.00 0.00 2.83
83 84 2.037136 CAGGGCGAGCTCCAACAAG 61.037 63.158 8.47 0.00 0.00 3.16
84 85 2.747855 GGGCGAGCTCCAACAAGG 60.748 66.667 8.47 0.00 39.47 3.61
85 86 3.435186 GGCGAGCTCCAACAAGGC 61.435 66.667 8.47 3.38 37.29 4.35
86 87 2.669569 GCGAGCTCCAACAAGGCA 60.670 61.111 8.47 0.00 37.29 4.75
87 88 2.684843 GCGAGCTCCAACAAGGCAG 61.685 63.158 8.47 0.00 37.29 4.85
88 89 2.037136 CGAGCTCCAACAAGGCAGG 61.037 63.158 8.47 0.00 37.29 4.85
89 90 1.676967 GAGCTCCAACAAGGCAGGG 60.677 63.158 0.87 0.00 37.29 4.45
90 91 3.376918 GCTCCAACAAGGCAGGGC 61.377 66.667 0.00 0.00 37.29 5.19
108 109 4.441695 CGGAGCTGCTTGGCGAGA 62.442 66.667 5.76 0.00 37.29 4.04
109 110 2.188994 GGAGCTGCTTGGCGAGAT 59.811 61.111 5.76 0.00 37.29 2.75
110 111 1.886777 GGAGCTGCTTGGCGAGATC 60.887 63.158 5.76 0.00 37.29 2.75
111 112 1.153489 GAGCTGCTTGGCGAGATCA 60.153 57.895 5.76 0.00 37.29 2.92
112 113 1.152989 GAGCTGCTTGGCGAGATCAG 61.153 60.000 5.76 5.49 37.29 2.90
113 114 2.178890 GCTGCTTGGCGAGATCAGG 61.179 63.158 5.76 0.00 0.00 3.86
114 115 2.124983 TGCTTGGCGAGATCAGGC 60.125 61.111 5.76 7.64 37.67 4.85
115 116 3.267860 GCTTGGCGAGATCAGGCG 61.268 66.667 5.76 4.65 36.92 5.52
116 117 2.496341 CTTGGCGAGATCAGGCGA 59.504 61.111 0.00 7.24 36.92 5.54
117 118 1.591059 CTTGGCGAGATCAGGCGAG 60.591 63.158 14.53 14.53 38.94 5.03
118 119 3.723235 TTGGCGAGATCAGGCGAGC 62.723 63.158 9.52 0.00 36.92 5.03
119 120 3.910490 GGCGAGATCAGGCGAGCT 61.910 66.667 6.80 0.00 41.70 4.09
122 123 2.334653 GAGATCAGGCGAGCTCCG 59.665 66.667 8.47 4.62 46.83 4.63
123 124 2.124109 AGATCAGGCGAGCTCCGA 60.124 61.111 8.47 0.00 41.76 4.55
124 125 2.400896 GAGATCAGGCGAGCTCCGAC 62.401 65.000 8.47 5.68 46.83 4.79
132 133 4.200283 GAGCTCCGACGAGGGCAG 62.200 72.222 0.87 3.34 41.52 4.85
151 152 4.767255 GCGGGAGGTGCCAGTGAG 62.767 72.222 0.00 0.00 38.95 3.51
152 153 2.997315 CGGGAGGTGCCAGTGAGA 60.997 66.667 0.00 0.00 38.95 3.27
153 154 2.665603 GGGAGGTGCCAGTGAGAC 59.334 66.667 0.00 0.00 38.95 3.36
154 155 2.665603 GGAGGTGCCAGTGAGACC 59.334 66.667 0.00 0.00 36.34 3.85
155 156 2.262915 GAGGTGCCAGTGAGACCG 59.737 66.667 0.00 0.00 34.72 4.79
156 157 2.203640 AGGTGCCAGTGAGACCGA 60.204 61.111 0.00 0.00 34.72 4.69
157 158 2.219325 GAGGTGCCAGTGAGACCGAG 62.219 65.000 0.00 0.00 34.72 4.63
158 159 2.262915 GTGCCAGTGAGACCGAGG 59.737 66.667 0.00 0.00 0.00 4.63
159 160 3.695606 TGCCAGTGAGACCGAGGC 61.696 66.667 0.00 0.00 45.41 4.70
160 161 4.803426 GCCAGTGAGACCGAGGCG 62.803 72.222 0.00 0.00 35.42 5.52
172 173 2.813908 GAGGCGGCGTTCGATGTT 60.814 61.111 9.37 0.00 42.43 2.71
173 174 3.083600 GAGGCGGCGTTCGATGTTG 62.084 63.158 9.37 0.00 42.43 3.33
174 175 4.160635 GGCGGCGTTCGATGTTGG 62.161 66.667 9.37 0.00 42.43 3.77
175 176 3.115892 GCGGCGTTCGATGTTGGA 61.116 61.111 9.37 0.00 42.43 3.53
176 177 3.081133 CGGCGTTCGATGTTGGAG 58.919 61.111 0.00 0.00 42.43 3.86
177 178 2.452813 CGGCGTTCGATGTTGGAGG 61.453 63.158 0.00 0.00 42.43 4.30
178 179 2.750888 GGCGTTCGATGTTGGAGGC 61.751 63.158 0.00 0.00 0.00 4.70
179 180 3.081133 CGTTCGATGTTGGAGGCG 58.919 61.111 0.00 0.00 0.00 5.52
180 181 2.452813 CGTTCGATGTTGGAGGCGG 61.453 63.158 0.00 0.00 0.00 6.13
181 182 1.375523 GTTCGATGTTGGAGGCGGT 60.376 57.895 0.00 0.00 0.00 5.68
182 183 0.953960 GTTCGATGTTGGAGGCGGTT 60.954 55.000 0.00 0.00 0.00 4.44
183 184 0.953471 TTCGATGTTGGAGGCGGTTG 60.953 55.000 0.00 0.00 0.00 3.77
184 185 2.398554 CGATGTTGGAGGCGGTTGG 61.399 63.158 0.00 0.00 0.00 3.77
185 186 2.035626 ATGTTGGAGGCGGTTGGG 59.964 61.111 0.00 0.00 0.00 4.12
186 187 3.583882 ATGTTGGAGGCGGTTGGGG 62.584 63.158 0.00 0.00 0.00 4.96
187 188 3.961414 GTTGGAGGCGGTTGGGGA 61.961 66.667 0.00 0.00 0.00 4.81
188 189 2.938798 TTGGAGGCGGTTGGGGAT 60.939 61.111 0.00 0.00 0.00 3.85
189 190 2.978946 TTGGAGGCGGTTGGGGATC 61.979 63.158 0.00 0.00 0.00 3.36
190 191 4.547367 GGAGGCGGTTGGGGATCG 62.547 72.222 0.00 0.00 34.13 3.69
191 192 3.467226 GAGGCGGTTGGGGATCGA 61.467 66.667 0.00 0.00 32.14 3.59
192 193 3.447025 GAGGCGGTTGGGGATCGAG 62.447 68.421 0.00 0.00 32.14 4.04
193 194 4.547367 GGCGGTTGGGGATCGAGG 62.547 72.222 0.00 0.00 32.14 4.63
194 195 4.547367 GCGGTTGGGGATCGAGGG 62.547 72.222 0.00 0.00 32.14 4.30
195 196 2.762459 CGGTTGGGGATCGAGGGA 60.762 66.667 0.00 0.00 32.14 4.20
196 197 2.363975 CGGTTGGGGATCGAGGGAA 61.364 63.158 0.00 0.00 32.14 3.97
197 198 1.223763 GGTTGGGGATCGAGGGAAC 59.776 63.158 0.00 0.00 0.00 3.62
199 200 1.492764 GTTGGGGATCGAGGGAACTA 58.507 55.000 0.00 0.00 44.43 2.24
200 201 1.413077 GTTGGGGATCGAGGGAACTAG 59.587 57.143 0.00 0.00 44.43 2.57
201 202 0.635009 TGGGGATCGAGGGAACTAGT 59.365 55.000 0.00 0.00 44.43 2.57
202 203 1.041437 GGGGATCGAGGGAACTAGTG 58.959 60.000 0.00 0.00 44.43 2.74
203 204 1.041437 GGGATCGAGGGAACTAGTGG 58.959 60.000 0.00 0.00 44.43 4.00
204 205 0.389757 GGATCGAGGGAACTAGTGGC 59.610 60.000 0.00 0.00 44.43 5.01
205 206 0.030908 GATCGAGGGAACTAGTGGCG 59.969 60.000 0.00 0.00 44.43 5.69
206 207 1.392710 ATCGAGGGAACTAGTGGCGG 61.393 60.000 0.00 0.00 44.43 6.13
207 208 2.187163 GAGGGAACTAGTGGCGGC 59.813 66.667 0.00 0.00 44.43 6.53
208 209 2.284699 AGGGAACTAGTGGCGGCT 60.285 61.111 11.43 0.00 40.61 5.52
209 210 2.125106 GGGAACTAGTGGCGGCTG 60.125 66.667 11.43 0.27 0.00 4.85
210 211 2.125106 GGAACTAGTGGCGGCTGG 60.125 66.667 11.43 0.00 0.00 4.85
211 212 2.125106 GAACTAGTGGCGGCTGGG 60.125 66.667 11.43 0.30 0.00 4.45
212 213 3.682292 GAACTAGTGGCGGCTGGGG 62.682 68.421 11.43 0.68 0.00 4.96
213 214 4.715130 ACTAGTGGCGGCTGGGGA 62.715 66.667 11.43 0.00 0.00 4.81
214 215 3.854669 CTAGTGGCGGCTGGGGAG 61.855 72.222 11.43 0.00 0.00 4.30
215 216 4.715130 TAGTGGCGGCTGGGGAGT 62.715 66.667 11.43 0.00 0.00 3.85
221 222 4.135153 CGGCTGGGGAGTCGAGTG 62.135 72.222 0.00 0.00 0.00 3.51
222 223 2.680352 GGCTGGGGAGTCGAGTGA 60.680 66.667 0.00 0.00 0.00 3.41
223 224 2.716017 GGCTGGGGAGTCGAGTGAG 61.716 68.421 0.00 0.00 0.00 3.51
224 225 1.679305 GCTGGGGAGTCGAGTGAGA 60.679 63.158 0.00 0.00 0.00 3.27
225 226 1.662438 GCTGGGGAGTCGAGTGAGAG 61.662 65.000 0.00 0.00 0.00 3.20
226 227 0.034960 CTGGGGAGTCGAGTGAGAGA 60.035 60.000 0.00 0.00 0.00 3.10
227 228 0.404426 TGGGGAGTCGAGTGAGAGAA 59.596 55.000 0.00 0.00 0.00 2.87
228 229 1.203013 TGGGGAGTCGAGTGAGAGAAA 60.203 52.381 0.00 0.00 0.00 2.52
229 230 1.893801 GGGGAGTCGAGTGAGAGAAAA 59.106 52.381 0.00 0.00 0.00 2.29
230 231 2.299297 GGGGAGTCGAGTGAGAGAAAAA 59.701 50.000 0.00 0.00 0.00 1.94
245 246 4.973174 AAAAAGGGGCTGGCATGA 57.027 50.000 2.88 0.00 0.00 3.07
246 247 3.404636 AAAAAGGGGCTGGCATGAT 57.595 47.368 2.88 0.00 0.00 2.45
247 248 1.660242 AAAAAGGGGCTGGCATGATT 58.340 45.000 2.88 0.00 0.00 2.57
248 249 0.906775 AAAAGGGGCTGGCATGATTG 59.093 50.000 2.88 0.00 0.00 2.67
249 250 0.252375 AAAGGGGCTGGCATGATTGT 60.252 50.000 2.88 0.00 0.00 2.71
250 251 0.252375 AAGGGGCTGGCATGATTGTT 60.252 50.000 2.88 0.00 0.00 2.83
251 252 0.252375 AGGGGCTGGCATGATTGTTT 60.252 50.000 2.88 0.00 0.00 2.83
252 253 0.614812 GGGGCTGGCATGATTGTTTT 59.385 50.000 2.88 0.00 0.00 2.43
253 254 1.405933 GGGGCTGGCATGATTGTTTTC 60.406 52.381 2.88 0.00 0.00 2.29
254 255 1.275856 GGGCTGGCATGATTGTTTTCA 59.724 47.619 2.88 0.00 0.00 2.69
255 256 2.093341 GGGCTGGCATGATTGTTTTCAT 60.093 45.455 2.88 0.00 36.79 2.57
262 263 4.555718 CATGATTGTTTTCATGTGTGCG 57.444 40.909 6.32 0.00 45.15 5.34
263 264 3.978718 TGATTGTTTTCATGTGTGCGA 57.021 38.095 0.00 0.00 0.00 5.10
264 265 4.502171 TGATTGTTTTCATGTGTGCGAT 57.498 36.364 0.00 0.00 0.00 4.58
265 266 4.228317 TGATTGTTTTCATGTGTGCGATG 58.772 39.130 0.00 0.00 0.00 3.84
266 267 2.702898 TGTTTTCATGTGTGCGATGG 57.297 45.000 0.00 0.00 0.00 3.51
267 268 1.952990 TGTTTTCATGTGTGCGATGGT 59.047 42.857 0.00 0.00 0.00 3.55
268 269 2.287487 TGTTTTCATGTGTGCGATGGTG 60.287 45.455 0.00 0.00 0.00 4.17
269 270 1.603456 TTTCATGTGTGCGATGGTGT 58.397 45.000 0.00 0.00 0.00 4.16
270 271 1.603456 TTCATGTGTGCGATGGTGTT 58.397 45.000 0.00 0.00 0.00 3.32
271 272 1.155889 TCATGTGTGCGATGGTGTTC 58.844 50.000 0.00 0.00 0.00 3.18
272 273 0.179217 CATGTGTGCGATGGTGTTCG 60.179 55.000 0.00 0.00 41.99 3.95
273 274 1.298157 ATGTGTGCGATGGTGTTCGG 61.298 55.000 0.00 0.00 39.49 4.30
274 275 3.047280 TGTGCGATGGTGTTCGGC 61.047 61.111 0.00 0.00 39.49 5.54
275 276 2.742372 GTGCGATGGTGTTCGGCT 60.742 61.111 0.00 0.00 39.49 5.52
276 277 2.434185 TGCGATGGTGTTCGGCTC 60.434 61.111 0.00 0.00 39.49 4.70
277 278 3.554692 GCGATGGTGTTCGGCTCG 61.555 66.667 0.00 0.00 39.49 5.03
278 279 2.180769 CGATGGTGTTCGGCTCGA 59.819 61.111 0.00 0.00 35.50 4.04
279 280 1.874019 CGATGGTGTTCGGCTCGAG 60.874 63.158 8.45 8.45 37.14 4.04
280 281 1.215647 GATGGTGTTCGGCTCGAGT 59.784 57.895 15.13 0.00 37.14 4.18
281 282 1.078759 GATGGTGTTCGGCTCGAGTG 61.079 60.000 15.13 7.39 37.14 3.51
282 283 2.432628 GGTGTTCGGCTCGAGTGG 60.433 66.667 15.13 6.41 37.14 4.00
283 284 2.649034 GTGTTCGGCTCGAGTGGA 59.351 61.111 15.13 8.84 37.14 4.02
284 285 1.006571 GTGTTCGGCTCGAGTGGAA 60.007 57.895 15.13 14.37 37.14 3.53
285 286 0.389948 GTGTTCGGCTCGAGTGGAAT 60.390 55.000 15.13 0.00 37.14 3.01
286 287 1.135199 GTGTTCGGCTCGAGTGGAATA 60.135 52.381 15.13 12.67 37.14 1.75
287 288 1.754803 TGTTCGGCTCGAGTGGAATAT 59.245 47.619 15.13 0.00 37.14 1.28
288 289 2.167693 TGTTCGGCTCGAGTGGAATATT 59.832 45.455 15.13 0.00 37.14 1.28
289 290 2.795175 TCGGCTCGAGTGGAATATTC 57.205 50.000 15.13 6.93 0.00 1.75
290 291 2.307768 TCGGCTCGAGTGGAATATTCT 58.692 47.619 15.13 0.00 0.00 2.40
291 292 2.693591 TCGGCTCGAGTGGAATATTCTT 59.306 45.455 15.13 1.87 0.00 2.52
292 293 3.132289 TCGGCTCGAGTGGAATATTCTTT 59.868 43.478 15.13 1.52 0.00 2.52
293 294 3.871594 CGGCTCGAGTGGAATATTCTTTT 59.128 43.478 15.13 1.18 0.00 2.27
294 295 4.332819 CGGCTCGAGTGGAATATTCTTTTT 59.667 41.667 15.13 0.00 0.00 1.94
346 347 8.958060 ATTCCAAGCTCTAATATAGGTAGTGA 57.042 34.615 0.00 0.00 0.00 3.41
380 381 3.057596 CCGTTTTATTTTGCAGGAGCTCA 60.058 43.478 17.19 0.00 42.74 4.26
381 382 3.914364 CGTTTTATTTTGCAGGAGCTCAC 59.086 43.478 17.19 5.01 42.74 3.51
383 384 5.288804 GTTTTATTTTGCAGGAGCTCACAA 58.711 37.500 17.19 13.50 42.74 3.33
384 385 5.726980 TTTATTTTGCAGGAGCTCACAAT 57.273 34.783 17.19 3.04 42.74 2.71
388 389 2.229675 TGCAGGAGCTCACAATATCG 57.770 50.000 17.19 0.00 42.74 2.92
395 396 4.526262 AGGAGCTCACAATATCGCTAGAAT 59.474 41.667 17.19 0.00 31.96 2.40
396 397 4.862018 GGAGCTCACAATATCGCTAGAATC 59.138 45.833 17.19 0.00 31.96 2.52
412 413 1.672881 GAATCTCATGGGTTTGAGCCG 59.327 52.381 0.00 0.00 42.37 5.52
414 415 0.690192 TCTCATGGGTTTGAGCCGAA 59.310 50.000 0.00 0.00 42.37 4.30
423 424 4.524714 TGGGTTTGAGCCGAATTTTCATTA 59.475 37.500 0.00 0.00 38.98 1.90
443 444 9.676861 TTCATTACACTGATTCTGATGATTCTT 57.323 29.630 0.00 0.00 0.00 2.52
447 448 6.660800 ACACTGATTCTGATGATTCTTGGAT 58.339 36.000 0.00 0.00 0.00 3.41
448 449 6.542735 ACACTGATTCTGATGATTCTTGGATG 59.457 38.462 0.00 0.00 0.00 3.51
451 452 7.445707 ACTGATTCTGATGATTCTTGGATGATG 59.554 37.037 0.00 0.00 0.00 3.07
455 456 5.826208 TCTGATGATTCTTGGATGATGTTGG 59.174 40.000 0.00 0.00 0.00 3.77
463 464 3.438216 TGGATGATGTTGGAGAAGCAA 57.562 42.857 0.00 0.00 0.00 3.91
464 465 3.349927 TGGATGATGTTGGAGAAGCAAG 58.650 45.455 0.00 0.00 0.00 4.01
466 467 3.376546 GGATGATGTTGGAGAAGCAAGTC 59.623 47.826 0.00 0.00 0.00 3.01
467 468 2.416747 TGATGTTGGAGAAGCAAGTCG 58.583 47.619 0.00 0.00 0.00 4.18
469 470 0.756294 TGTTGGAGAAGCAAGTCGGA 59.244 50.000 0.00 0.00 0.00 4.55
471 472 1.048601 TTGGAGAAGCAAGTCGGAGT 58.951 50.000 0.00 0.00 0.00 3.85
492 493 7.254137 GGAGTTCTTTTCAGCTTATTGATTCC 58.746 38.462 0.00 0.00 0.00 3.01
493 494 7.163001 AGTTCTTTTCAGCTTATTGATTCCC 57.837 36.000 0.00 0.00 0.00 3.97
496 497 5.653769 TCTTTTCAGCTTATTGATTCCCCAG 59.346 40.000 0.00 0.00 0.00 4.45
497 498 3.582998 TCAGCTTATTGATTCCCCAGG 57.417 47.619 0.00 0.00 0.00 4.45
501 502 2.498167 CTTATTGATTCCCCAGGCTCG 58.502 52.381 0.00 0.00 0.00 5.03
502 503 0.764890 TATTGATTCCCCAGGCTCGG 59.235 55.000 0.00 0.00 0.00 4.63
509 510 2.429930 CCCAGGCTCGGTTGTTGA 59.570 61.111 0.00 0.00 0.00 3.18
532 533 7.680730 TGAGAATCACCTTAAAAGAACTAGCT 58.319 34.615 0.00 0.00 42.56 3.32
533 534 7.819900 TGAGAATCACCTTAAAAGAACTAGCTC 59.180 37.037 0.00 0.00 42.56 4.09
536 537 9.654663 GAATCACCTTAAAAGAACTAGCTCTAA 57.345 33.333 0.00 0.00 0.00 2.10
537 538 9.660180 AATCACCTTAAAAGAACTAGCTCTAAG 57.340 33.333 0.00 0.00 0.00 2.18
539 540 8.088981 TCACCTTAAAAGAACTAGCTCTAAGTG 58.911 37.037 0.00 0.00 0.00 3.16
540 541 7.873505 CACCTTAAAAGAACTAGCTCTAAGTGT 59.126 37.037 0.00 0.00 0.00 3.55
541 542 7.873505 ACCTTAAAAGAACTAGCTCTAAGTGTG 59.126 37.037 0.00 0.00 0.00 3.82
542 543 7.873505 CCTTAAAAGAACTAGCTCTAAGTGTGT 59.126 37.037 0.00 0.00 0.00 3.72
543 544 8.589335 TTAAAAGAACTAGCTCTAAGTGTGTG 57.411 34.615 0.00 0.00 0.00 3.82
544 545 4.181309 AGAACTAGCTCTAAGTGTGTGC 57.819 45.455 0.00 0.00 0.00 4.57
545 546 3.829601 AGAACTAGCTCTAAGTGTGTGCT 59.170 43.478 0.00 0.00 37.72 4.40
546 547 3.859411 ACTAGCTCTAAGTGTGTGCTC 57.141 47.619 0.00 0.00 35.47 4.26
547 548 2.494073 ACTAGCTCTAAGTGTGTGCTCC 59.506 50.000 0.00 0.00 35.47 4.70
548 549 1.638529 AGCTCTAAGTGTGTGCTCCT 58.361 50.000 0.00 0.00 0.00 3.69
549 550 1.548269 AGCTCTAAGTGTGTGCTCCTC 59.452 52.381 0.00 0.00 0.00 3.71
550 551 1.273606 GCTCTAAGTGTGTGCTCCTCA 59.726 52.381 0.00 0.00 0.00 3.86
551 552 2.289072 GCTCTAAGTGTGTGCTCCTCAA 60.289 50.000 0.00 0.00 0.00 3.02
552 553 3.803715 GCTCTAAGTGTGTGCTCCTCAAA 60.804 47.826 0.00 0.00 0.00 2.69
553 554 4.380531 CTCTAAGTGTGTGCTCCTCAAAA 58.619 43.478 0.00 0.00 0.00 2.44
554 555 4.776349 TCTAAGTGTGTGCTCCTCAAAAA 58.224 39.130 0.00 0.00 0.00 1.94
555 556 5.376625 TCTAAGTGTGTGCTCCTCAAAAAT 58.623 37.500 0.00 0.00 0.00 1.82
556 557 6.530120 TCTAAGTGTGTGCTCCTCAAAAATA 58.470 36.000 0.00 0.00 0.00 1.40
557 558 6.995686 TCTAAGTGTGTGCTCCTCAAAAATAA 59.004 34.615 0.00 0.00 0.00 1.40
558 559 6.463995 AAGTGTGTGCTCCTCAAAAATAAA 57.536 33.333 0.00 0.00 0.00 1.40
559 560 5.831997 AGTGTGTGCTCCTCAAAAATAAAC 58.168 37.500 0.00 0.00 0.00 2.01
560 561 5.359576 AGTGTGTGCTCCTCAAAAATAAACA 59.640 36.000 0.00 0.00 0.00 2.83
561 562 5.458779 GTGTGTGCTCCTCAAAAATAAACAC 59.541 40.000 0.00 0.00 36.73 3.32
562 563 5.359576 TGTGTGCTCCTCAAAAATAAACACT 59.640 36.000 0.00 0.00 37.04 3.55
563 564 5.687285 GTGTGCTCCTCAAAAATAAACACTG 59.313 40.000 0.00 0.00 34.13 3.66
564 565 5.592282 TGTGCTCCTCAAAAATAAACACTGA 59.408 36.000 0.00 0.00 0.00 3.41
565 566 6.265196 TGTGCTCCTCAAAAATAAACACTGAT 59.735 34.615 0.00 0.00 0.00 2.90
566 567 6.583806 GTGCTCCTCAAAAATAAACACTGATG 59.416 38.462 0.00 0.00 0.00 3.07
567 568 5.574443 GCTCCTCAAAAATAAACACTGATGC 59.426 40.000 0.00 0.00 0.00 3.91
568 569 6.571150 GCTCCTCAAAAATAAACACTGATGCT 60.571 38.462 0.00 0.00 0.00 3.79
569 570 7.288810 TCCTCAAAAATAAACACTGATGCTT 57.711 32.000 0.00 0.00 0.00 3.91
570 571 8.402798 TCCTCAAAAATAAACACTGATGCTTA 57.597 30.769 0.00 0.00 0.00 3.09
571 572 8.855110 TCCTCAAAAATAAACACTGATGCTTAA 58.145 29.630 0.00 0.00 0.00 1.85
572 573 9.643693 CCTCAAAAATAAACACTGATGCTTAAT 57.356 29.630 0.00 0.00 0.00 1.40
599 600 5.043737 TGGTTTATTCCTTATAAGCGCCT 57.956 39.130 2.29 0.00 32.45 5.52
614 615 2.987046 GCGCCTTGCATTATACAAGAC 58.013 47.619 6.74 0.00 45.99 3.01
619 620 5.295787 CGCCTTGCATTATACAAGACCTAAA 59.704 40.000 6.74 0.00 45.99 1.85
620 621 6.017109 CGCCTTGCATTATACAAGACCTAAAT 60.017 38.462 6.74 0.00 45.99 1.40
621 622 7.172532 CGCCTTGCATTATACAAGACCTAAATA 59.827 37.037 6.74 0.00 45.99 1.40
622 623 9.014297 GCCTTGCATTATACAAGACCTAAATAT 57.986 33.333 6.74 0.00 45.99 1.28
625 626 8.771920 TGCATTATACAAGACCTAAATATCCG 57.228 34.615 0.00 0.00 0.00 4.18
626 627 7.822334 TGCATTATACAAGACCTAAATATCCGG 59.178 37.037 0.00 0.00 0.00 5.14
628 629 7.549147 TTATACAAGACCTAAATATCCGGCT 57.451 36.000 0.00 0.00 0.00 5.52
629 630 4.772886 ACAAGACCTAAATATCCGGCTT 57.227 40.909 0.00 0.00 0.00 4.35
630 631 4.704965 ACAAGACCTAAATATCCGGCTTC 58.295 43.478 0.00 0.00 0.00 3.86
632 633 3.314693 AGACCTAAATATCCGGCTTCCA 58.685 45.455 0.00 0.00 0.00 3.53
633 634 3.910627 AGACCTAAATATCCGGCTTCCAT 59.089 43.478 0.00 0.00 0.00 3.41
634 635 5.091552 AGACCTAAATATCCGGCTTCCATA 58.908 41.667 0.00 0.00 0.00 2.74
635 636 5.546499 AGACCTAAATATCCGGCTTCCATAA 59.454 40.000 0.00 0.00 0.00 1.90
636 637 5.805728 ACCTAAATATCCGGCTTCCATAAG 58.194 41.667 0.00 0.00 35.68 1.73
637 638 5.546499 ACCTAAATATCCGGCTTCCATAAGA 59.454 40.000 0.00 0.00 34.37 2.10
638 639 6.043938 ACCTAAATATCCGGCTTCCATAAGAA 59.956 38.462 0.00 0.00 34.37 2.52
640 641 2.240493 ATCCGGCTTCCATAAGAACG 57.760 50.000 0.00 0.00 34.37 3.95
641 642 2.690326 CCGGCTTCCATAAGAACGG 58.310 57.895 0.00 7.11 43.51 4.44
642 643 0.814010 CCGGCTTCCATAAGAACGGG 60.814 60.000 11.49 0.00 44.42 5.28
643 644 0.107848 CGGCTTCCATAAGAACGGGT 60.108 55.000 0.00 0.00 34.37 5.28
644 645 1.664873 GGCTTCCATAAGAACGGGTC 58.335 55.000 0.00 0.00 34.37 4.46
645 646 1.209747 GGCTTCCATAAGAACGGGTCT 59.790 52.381 0.00 0.00 38.69 3.85
648 649 1.271856 TCCATAAGAACGGGTCTGCA 58.728 50.000 0.00 0.00 36.40 4.41
649 650 1.207089 TCCATAAGAACGGGTCTGCAG 59.793 52.381 7.63 7.63 36.40 4.41
650 651 1.656652 CATAAGAACGGGTCTGCAGG 58.343 55.000 15.13 0.00 36.40 4.85
651 652 1.066143 CATAAGAACGGGTCTGCAGGT 60.066 52.381 15.13 0.00 36.40 4.00
657 2747 0.251474 ACGGGTCTGCAGGTACTACA 60.251 55.000 15.13 0.00 36.02 2.74
673 2763 7.867403 CAGGTACTACAATTTCAAGTGCATTTT 59.133 33.333 0.00 0.00 36.02 1.82
697 2787 5.831997 ACTCATTTAAGCAAGTCAAACACC 58.168 37.500 0.00 0.00 0.00 4.16
698 2788 5.195001 TCATTTAAGCAAGTCAAACACCC 57.805 39.130 0.00 0.00 0.00 4.61
700 2790 1.989706 TAAGCAAGTCAAACACCCCC 58.010 50.000 0.00 0.00 0.00 5.40
701 2791 0.261696 AAGCAAGTCAAACACCCCCT 59.738 50.000 0.00 0.00 0.00 4.79
702 2792 1.145571 AGCAAGTCAAACACCCCCTA 58.854 50.000 0.00 0.00 0.00 3.53
703 2793 1.497286 AGCAAGTCAAACACCCCCTAA 59.503 47.619 0.00 0.00 0.00 2.69
705 2795 2.696187 GCAAGTCAAACACCCCCTAAAA 59.304 45.455 0.00 0.00 0.00 1.52
706 2796 3.133183 GCAAGTCAAACACCCCCTAAAAA 59.867 43.478 0.00 0.00 0.00 1.94
727 2817 3.782889 AAACAAGTCAAACACAGCTCC 57.217 42.857 0.00 0.00 0.00 4.70
732 2822 1.079503 GTCAAACACAGCTCCCGATC 58.920 55.000 0.00 0.00 0.00 3.69
740 2830 3.100191 GCTCCCGATCGATTCGCG 61.100 66.667 18.66 0.00 46.71 5.87
763 2853 2.704342 AAACAACCGGTCCGACTCCG 62.704 60.000 14.39 0.00 46.49 4.63
818 2908 2.436109 GCTCACCCCCTTTCAGCA 59.564 61.111 0.00 0.00 0.00 4.41
819 2909 1.676967 GCTCACCCCCTTTCAGCAG 60.677 63.158 0.00 0.00 0.00 4.24
820 2910 1.676967 CTCACCCCCTTTCAGCAGC 60.677 63.158 0.00 0.00 0.00 5.25
861 2951 1.419387 CCACATCATCTTCCTCCTCCC 59.581 57.143 0.00 0.00 0.00 4.30
913 3003 4.643387 ACCGCAAAAGCCGAGCCT 62.643 61.111 0.00 0.00 0.00 4.58
914 3004 3.365265 CCGCAAAAGCCGAGCCTT 61.365 61.111 0.00 0.00 0.00 4.35
994 3084 2.801162 CGAGCACACGAGTCACCG 60.801 66.667 0.00 0.00 35.09 4.94
1310 3404 3.525545 GGACTACCCGCCCGAGTC 61.526 72.222 0.00 0.00 39.12 3.36
1426 3520 2.032528 CCAGCGCCCAGAAGAACA 59.967 61.111 2.29 0.00 0.00 3.18
1498 3592 2.184322 GGCTCGTCGGCTTCATCA 59.816 61.111 5.82 0.00 34.85 3.07
1622 3721 2.107950 TACATTGGCGAAACCTCTGG 57.892 50.000 0.00 0.00 40.22 3.86
1659 3758 6.828502 ATGTAGTGTAGTCATGTAAATGCG 57.171 37.500 0.00 0.00 0.00 4.73
1692 3805 6.811170 GTCTAATCCTTTCACTCTGAACTCTG 59.189 42.308 0.00 0.00 35.89 3.35
1706 3827 7.013274 ACTCTGAACTCTGATGATACTAGAAGC 59.987 40.741 0.00 0.00 0.00 3.86
1717 3880 5.102313 TGATACTAGAAGCACACACATTCG 58.898 41.667 0.00 0.00 0.00 3.34
1718 3881 2.069273 ACTAGAAGCACACACATTCGC 58.931 47.619 0.00 0.00 0.00 4.70
1720 3883 0.250467 AGAAGCACACACATTCGCCT 60.250 50.000 0.00 0.00 0.00 5.52
1742 3905 5.182001 CCTTCAGCTGCTGTTATTAGTTGTT 59.818 40.000 27.24 0.00 32.61 2.83
1743 3906 6.371548 CCTTCAGCTGCTGTTATTAGTTGTTA 59.628 38.462 27.24 2.21 32.61 2.41
1744 3907 6.721571 TCAGCTGCTGTTATTAGTTGTTAC 57.278 37.500 27.24 0.00 32.61 2.50
1773 3936 1.266175 GTCGGTTCACTCGAGACAGAA 59.734 52.381 21.68 16.30 37.31 3.02
1779 3942 4.090034 GTTCACTCGAGACAGAACGATAC 58.910 47.826 21.68 5.09 37.86 2.24
1781 3944 4.752146 TCACTCGAGACAGAACGATACTA 58.248 43.478 21.68 0.00 37.86 1.82
1782 3945 5.358090 TCACTCGAGACAGAACGATACTAT 58.642 41.667 21.68 0.00 37.86 2.12
1783 3946 5.816258 TCACTCGAGACAGAACGATACTATT 59.184 40.000 21.68 0.00 37.86 1.73
1784 3947 6.315642 TCACTCGAGACAGAACGATACTATTT 59.684 38.462 21.68 0.00 37.86 1.40
1785 3948 6.412362 CACTCGAGACAGAACGATACTATTTG 59.588 42.308 21.68 0.00 37.86 2.32
1786 3949 5.817988 TCGAGACAGAACGATACTATTTGG 58.182 41.667 0.00 0.00 33.62 3.28
1788 3951 6.539826 TCGAGACAGAACGATACTATTTGGTA 59.460 38.462 0.00 0.00 33.62 3.25
1791 3954 8.289939 AGACAGAACGATACTATTTGGTAAGA 57.710 34.615 0.00 0.00 0.00 2.10
1793 3956 9.530633 GACAGAACGATACTATTTGGTAAGATT 57.469 33.333 0.00 0.00 0.00 2.40
1796 3959 9.694137 AGAACGATACTATTTGGTAAGATTAGC 57.306 33.333 0.00 0.00 0.00 3.09
1799 3962 9.998106 ACGATACTATTTGGTAAGATTAGCAAT 57.002 29.630 15.64 9.85 46.57 3.56
1804 3967 9.686683 ACTATTTGGTAAGATTAGCAATCAGTT 57.313 29.630 15.64 6.60 46.57 3.16
1806 3969 7.994425 TTTGGTAAGATTAGCAATCAGTTCA 57.006 32.000 15.64 0.00 46.57 3.18
1809 3972 9.679661 TTGGTAAGATTAGCAATCAGTTCATAA 57.320 29.630 11.98 0.00 43.69 1.90
1810 3973 9.851686 TGGTAAGATTAGCAATCAGTTCATAAT 57.148 29.630 2.14 0.00 40.42 1.28
1870 4033 6.697395 TCAGTTGCTGTTATTAGCTCTTACA 58.303 36.000 0.00 0.00 44.01 2.41
1894 4057 8.540388 ACATGTTATATGTCCACTACAGACTTT 58.460 33.333 0.00 0.00 42.70 2.66
1910 4073 7.316544 ACAGACTTTAAACACACTTTGGTAG 57.683 36.000 0.00 0.00 0.00 3.18
1916 4079 8.403236 ACTTTAAACACACTTTGGTAGAATCAC 58.597 33.333 0.00 0.00 0.00 3.06
1930 4093 9.793259 TTGGTAGAATCACTGAACTAGAAAAAT 57.207 29.630 0.00 0.00 0.00 1.82
2040 4203 7.611770 CAATGTCTCTATATACGGGGATTTCA 58.388 38.462 0.00 0.00 0.00 2.69
2060 4223 3.322541 TCAACACTCCTAACAATGACGGA 59.677 43.478 0.00 0.00 0.00 4.69
2219 4382 2.854185 GTGCGCTATCAAATTTGGAAGC 59.146 45.455 24.28 24.28 34.87 3.86
2422 4776 0.542702 CACTTTGAGGCATTGGGGGT 60.543 55.000 0.00 0.00 0.00 4.95
2464 4818 4.944069 CCCGGCTCCCCTCCTAGG 62.944 77.778 0.82 0.82 34.30 3.02
2473 4827 1.691219 CCCTCCTAGGCCAAGCAAA 59.309 57.895 5.01 0.00 32.73 3.68
2474 4828 0.394899 CCCTCCTAGGCCAAGCAAAG 60.395 60.000 5.01 0.00 32.73 2.77
2475 4829 0.620556 CCTCCTAGGCCAAGCAAAGA 59.379 55.000 5.01 0.00 0.00 2.52
2667 5022 4.092968 GGGAACGTTAGTGATGTGACATTC 59.907 45.833 0.00 0.00 0.00 2.67
2805 5160 4.645667 TGTTCGTTTCATCAACATCTCG 57.354 40.909 0.00 0.00 34.68 4.04
2932 5287 0.693092 TGGGGGCCTGTATGACTACC 60.693 60.000 0.84 0.00 0.00 3.18
2940 5295 1.681793 CTGTATGACTACCGACCTGGG 59.318 57.143 0.00 0.00 44.64 4.45
3310 5685 1.276989 CCAATCCCAAACAGCATGCTT 59.723 47.619 19.98 7.04 42.53 3.91
3315 5690 2.557924 TCCCAAACAGCATGCTTTACTG 59.442 45.455 19.98 12.68 42.53 2.74
3349 5727 1.765314 GCATGTATGGAGAGTCCCTGT 59.235 52.381 0.00 0.00 35.03 4.00
3365 5743 1.202687 CCTGTCTTGGCTGTGTTCTGA 60.203 52.381 0.00 0.00 0.00 3.27
3391 5769 6.791887 TTGAATTCAAGACTGTAGAAGCTG 57.208 37.500 16.91 0.00 0.00 4.24
3392 5770 6.101650 TGAATTCAAGACTGTAGAAGCTGA 57.898 37.500 5.45 0.00 0.00 4.26
3393 5771 6.162079 TGAATTCAAGACTGTAGAAGCTGAG 58.838 40.000 5.45 0.00 0.00 3.35
3394 5772 5.736951 ATTCAAGACTGTAGAAGCTGAGT 57.263 39.130 0.00 0.00 0.00 3.41
3395 5773 4.775058 TCAAGACTGTAGAAGCTGAGTC 57.225 45.455 0.00 0.00 35.97 3.36
3450 5828 4.714632 TCAAGTGAACCTTCCACCTAAAG 58.285 43.478 0.00 0.00 35.23 1.85
3481 5859 7.010460 CGAATGATGAAGTTTAGTATGCTGTGA 59.990 37.037 0.00 0.00 0.00 3.58
3490 5868 6.425114 AGTTTAGTATGCTGTGACAGTTTGAG 59.575 38.462 14.82 0.00 33.43 3.02
3524 5902 6.491745 TCAATGGCTTGTGTTTTGTCCTATTA 59.508 34.615 0.00 0.00 33.87 0.98
3525 5903 5.957842 TGGCTTGTGTTTTGTCCTATTAG 57.042 39.130 0.00 0.00 0.00 1.73
3557 5937 5.039645 ACTCCAGAATCATTTCTCCCCTAA 58.960 41.667 0.00 0.00 40.28 2.69
3569 5949 0.251608 TCCCCTAACAAAAGCCAGGC 60.252 55.000 1.84 1.84 0.00 4.85
3590 5970 4.263243 GGCCAAGTAGATGGAGCTATCATT 60.263 45.833 0.00 0.00 43.54 2.57
3603 5983 8.529424 TGGAGCTATCATTCATTTTTCAGATT 57.471 30.769 0.00 0.00 0.00 2.40
3654 6036 8.861033 TTGCTGATATATTGACAAAAGAATGC 57.139 30.769 0.00 0.00 0.00 3.56
3697 6087 9.305925 GAGAGAATTTCATGTCAGTTTTTGTTT 57.694 29.630 0.00 0.00 0.00 2.83
3710 6100 9.255304 GTCAGTTTTTGTTTAAGAAATATGGCA 57.745 29.630 0.00 0.00 0.00 4.92
3712 6102 9.260002 CAGTTTTTGTTTAAGAAATATGGCAGT 57.740 29.630 0.00 0.00 0.00 4.40
3731 6121 6.653320 TGGCAGTCTTTATTAAATCACGACTT 59.347 34.615 6.21 0.00 0.00 3.01
3739 6129 9.180678 CTTTATTAAATCACGACTTGCAAAAGT 57.819 29.630 0.00 0.00 35.34 2.66
3745 6135 2.287915 CACGACTTGCAAAAGTACAGCT 59.712 45.455 0.00 0.00 32.22 4.24
3747 6137 2.654987 GACTTGCAAAAGTACAGCTGC 58.345 47.619 15.27 0.00 32.22 5.25
3752 6142 3.210227 TGCAAAAGTACAGCTGCAGTAA 58.790 40.909 15.27 0.00 39.77 2.24
3753 6143 3.820467 TGCAAAAGTACAGCTGCAGTAAT 59.180 39.130 15.27 2.78 39.77 1.89
3754 6144 4.278170 TGCAAAAGTACAGCTGCAGTAATT 59.722 37.500 15.27 11.30 39.77 1.40
3756 6146 6.016693 TGCAAAAGTACAGCTGCAGTAATTAA 60.017 34.615 15.27 3.18 39.77 1.40
3760 6150 6.037786 AGTACAGCTGCAGTAATTAAGTGA 57.962 37.500 15.27 0.00 0.00 3.41
3765 6155 6.486657 ACAGCTGCAGTAATTAAGTGAAAGAA 59.513 34.615 15.27 0.00 0.00 2.52
3865 6265 3.578282 ACACATAGCTTTTCTTTTGGGGG 59.422 43.478 0.00 0.00 0.00 5.40
3880 6330 3.670105 GGGGGAATGACACACACAT 57.330 52.632 0.00 0.00 0.00 3.21
3882 6332 2.643551 GGGGGAATGACACACACATAG 58.356 52.381 0.00 0.00 0.00 2.23
3891 6341 9.489084 GGAATGACACACACATAGCTAATATTA 57.511 33.333 0.00 0.00 0.00 0.98
3963 6438 4.583086 TTTTTCGGCGGTCCCTTT 57.417 50.000 7.21 0.00 0.00 3.11
3965 6440 1.978454 TTTTTCGGCGGTCCCTTTTA 58.022 45.000 7.21 0.00 0.00 1.52
3966 6441 1.525941 TTTTCGGCGGTCCCTTTTAG 58.474 50.000 7.21 0.00 0.00 1.85
3969 6444 0.037046 TCGGCGGTCCCTTTTAGAAC 60.037 55.000 7.21 0.00 0.00 3.01
3972 6447 2.737679 CGGCGGTCCCTTTTAGAACTAG 60.738 54.545 0.00 0.00 0.00 2.57
3974 6449 3.519579 GCGGTCCCTTTTAGAACTAGTC 58.480 50.000 0.00 0.00 0.00 2.59
3976 6451 3.512724 CGGTCCCTTTTAGAACTAGTCCA 59.487 47.826 0.00 0.00 0.00 4.02
3978 6453 5.361857 CGGTCCCTTTTAGAACTAGTCCATA 59.638 44.000 0.00 0.00 0.00 2.74
3982 6457 9.327628 GTCCCTTTTAGAACTAGTCCATATTTC 57.672 37.037 0.00 0.00 0.00 2.17
3984 6459 9.907229 CCCTTTTAGAACTAGTCCATATTTCTT 57.093 33.333 0.00 0.00 35.60 2.52
4033 6552 0.106669 GGCCCACTAAAGATCACCCC 60.107 60.000 0.00 0.00 0.00 4.95
4042 6561 3.441500 AAAGATCACCCCACTTCTTCC 57.558 47.619 0.00 0.00 0.00 3.46
4047 6566 0.984230 CACCCCACTTCTTCCTAGCA 59.016 55.000 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.750778 CTCTCTGGTGAGCTCCTCTTC 59.249 57.143 12.15 0.00 40.03 2.87
5 6 3.594453 CTCTCTGGTGAGCTCCTCT 57.406 57.895 12.15 0.00 40.03 3.69
12 13 2.363018 TCCCCGCTCTCTGGTGAG 60.363 66.667 0.00 0.00 41.51 3.51
13 14 2.363018 CTCCCCGCTCTCTGGTGA 60.363 66.667 0.00 0.00 0.00 4.02
14 15 3.465403 CCTCCCCGCTCTCTGGTG 61.465 72.222 0.00 0.00 0.00 4.17
15 16 4.787280 CCCTCCCCGCTCTCTGGT 62.787 72.222 0.00 0.00 0.00 4.00
17 18 2.123077 ATCCCTCCCCGCTCTCTG 60.123 66.667 0.00 0.00 0.00 3.35
19 20 2.123251 TCATCCCTCCCCGCTCTC 60.123 66.667 0.00 0.00 0.00 3.20
20 21 2.123077 CTCATCCCTCCCCGCTCT 60.123 66.667 0.00 0.00 0.00 4.09
21 22 2.123251 TCTCATCCCTCCCCGCTC 60.123 66.667 0.00 0.00 0.00 5.03
22 23 2.444895 GTCTCATCCCTCCCCGCT 60.445 66.667 0.00 0.00 0.00 5.52
23 24 3.917760 CGTCTCATCCCTCCCCGC 61.918 72.222 0.00 0.00 0.00 6.13
24 25 3.227276 CCGTCTCATCCCTCCCCG 61.227 72.222 0.00 0.00 0.00 5.73
25 26 3.551407 GCCGTCTCATCCCTCCCC 61.551 72.222 0.00 0.00 0.00 4.81
26 27 3.551407 GGCCGTCTCATCCCTCCC 61.551 72.222 0.00 0.00 0.00 4.30
27 28 2.444895 AGGCCGTCTCATCCCTCC 60.445 66.667 0.00 0.00 0.00 4.30
28 29 1.758514 TGAGGCCGTCTCATCCCTC 60.759 63.158 0.00 0.00 46.71 4.30
29 30 2.364560 TGAGGCCGTCTCATCCCT 59.635 61.111 0.00 0.00 46.71 4.20
35 36 1.446966 GCTCACTTGAGGCCGTCTC 60.447 63.158 8.32 0.00 42.29 3.36
36 37 1.882989 GAGCTCACTTGAGGCCGTCT 61.883 60.000 9.40 0.00 42.29 4.18
37 38 1.446966 GAGCTCACTTGAGGCCGTC 60.447 63.158 9.40 0.00 42.29 4.79
38 39 1.548357 ATGAGCTCACTTGAGGCCGT 61.548 55.000 20.97 0.00 42.29 5.68
39 40 1.088340 CATGAGCTCACTTGAGGCCG 61.088 60.000 20.97 0.00 42.29 6.13
40 41 1.375098 GCATGAGCTCACTTGAGGCC 61.375 60.000 20.97 0.00 42.29 5.19
41 42 1.703438 CGCATGAGCTCACTTGAGGC 61.703 60.000 20.97 14.29 42.29 4.70
42 43 0.108472 TCGCATGAGCTCACTTGAGG 60.108 55.000 20.97 10.12 42.29 3.86
43 44 1.279152 CTCGCATGAGCTCACTTGAG 58.721 55.000 20.97 20.45 44.75 3.02
44 45 0.108472 CCTCGCATGAGCTCACTTGA 60.108 55.000 20.97 15.26 41.13 3.02
45 46 1.088340 CCCTCGCATGAGCTCACTTG 61.088 60.000 20.97 15.87 41.13 3.16
46 47 1.220206 CCCTCGCATGAGCTCACTT 59.780 57.895 20.97 0.00 41.13 3.16
47 48 2.898738 CCCTCGCATGAGCTCACT 59.101 61.111 20.97 5.66 41.13 3.41
48 49 2.894387 GCCCTCGCATGAGCTCAC 60.894 66.667 20.97 6.39 41.13 3.51
49 50 3.381333 CTGCCCTCGCATGAGCTCA 62.381 63.158 20.79 20.79 46.11 4.26
50 51 2.588314 CTGCCCTCGCATGAGCTC 60.588 66.667 6.82 6.82 46.11 4.09
51 52 4.172512 CCTGCCCTCGCATGAGCT 62.173 66.667 0.00 0.00 46.11 4.09
64 65 4.704833 TGTTGGAGCTCGCCCTGC 62.705 66.667 7.83 0.00 0.00 4.85
65 66 2.032528 TTGTTGGAGCTCGCCCTG 59.967 61.111 7.83 0.00 0.00 4.45
66 67 2.348998 CTTGTTGGAGCTCGCCCT 59.651 61.111 7.83 0.00 0.00 5.19
67 68 2.747855 CCTTGTTGGAGCTCGCCC 60.748 66.667 7.83 0.00 38.35 6.13
68 69 3.435186 GCCTTGTTGGAGCTCGCC 61.435 66.667 7.83 0.00 38.35 5.54
69 70 2.669569 TGCCTTGTTGGAGCTCGC 60.670 61.111 7.83 4.02 38.35 5.03
70 71 2.037136 CCTGCCTTGTTGGAGCTCG 61.037 63.158 7.83 0.00 38.35 5.03
71 72 1.676967 CCCTGCCTTGTTGGAGCTC 60.677 63.158 4.71 4.71 38.35 4.09
72 73 2.437897 CCCTGCCTTGTTGGAGCT 59.562 61.111 0.00 0.00 38.35 4.09
73 74 3.376918 GCCCTGCCTTGTTGGAGC 61.377 66.667 0.00 0.00 38.35 4.70
74 75 2.677875 GGCCCTGCCTTGTTGGAG 60.678 66.667 0.00 0.00 46.69 3.86
91 92 3.729965 ATCTCGCCAAGCAGCTCCG 62.730 63.158 0.00 0.00 0.00 4.63
92 93 1.886777 GATCTCGCCAAGCAGCTCC 60.887 63.158 0.00 0.00 0.00 4.70
93 94 1.152989 CTGATCTCGCCAAGCAGCTC 61.153 60.000 0.00 0.00 0.00 4.09
94 95 1.153409 CTGATCTCGCCAAGCAGCT 60.153 57.895 0.00 0.00 0.00 4.24
95 96 2.178890 CCTGATCTCGCCAAGCAGC 61.179 63.158 0.00 0.00 0.00 5.25
96 97 2.178890 GCCTGATCTCGCCAAGCAG 61.179 63.158 0.00 0.00 0.00 4.24
97 98 2.124983 GCCTGATCTCGCCAAGCA 60.125 61.111 0.00 0.00 0.00 3.91
98 99 3.267860 CGCCTGATCTCGCCAAGC 61.268 66.667 0.00 0.00 0.00 4.01
99 100 1.591059 CTCGCCTGATCTCGCCAAG 60.591 63.158 0.00 0.00 0.00 3.61
100 101 2.496341 CTCGCCTGATCTCGCCAA 59.504 61.111 0.00 0.00 0.00 4.52
101 102 4.212913 GCTCGCCTGATCTCGCCA 62.213 66.667 0.00 0.00 0.00 5.69
102 103 3.839642 GAGCTCGCCTGATCTCGCC 62.840 68.421 0.00 0.00 28.61 5.54
103 104 2.354539 GAGCTCGCCTGATCTCGC 60.355 66.667 0.00 0.00 28.61 5.03
104 105 2.334653 GGAGCTCGCCTGATCTCG 59.665 66.667 7.83 0.00 38.07 4.04
105 106 2.190170 TCGGAGCTCGCCTGATCTC 61.190 63.158 7.83 0.00 36.78 2.75
106 107 2.124109 TCGGAGCTCGCCTGATCT 60.124 61.111 7.83 0.00 39.05 2.75
107 108 2.026879 GTCGGAGCTCGCCTGATC 59.973 66.667 7.83 0.00 39.05 2.92
108 109 3.893763 CGTCGGAGCTCGCCTGAT 61.894 66.667 7.83 0.00 39.05 2.90
110 111 4.544689 CTCGTCGGAGCTCGCCTG 62.545 72.222 7.83 0.00 39.05 4.85
115 116 4.200283 CTGCCCTCGTCGGAGCTC 62.200 72.222 4.71 4.71 39.06 4.09
134 135 4.767255 CTCACTGGCACCTCCCGC 62.767 72.222 0.00 0.00 0.00 6.13
135 136 2.997315 TCTCACTGGCACCTCCCG 60.997 66.667 0.00 0.00 0.00 5.14
136 137 2.665603 GTCTCACTGGCACCTCCC 59.334 66.667 0.00 0.00 0.00 4.30
137 138 2.665603 GGTCTCACTGGCACCTCC 59.334 66.667 0.00 0.00 0.00 4.30
138 139 2.219325 CTCGGTCTCACTGGCACCTC 62.219 65.000 0.00 0.00 0.00 3.85
139 140 2.203640 TCGGTCTCACTGGCACCT 60.204 61.111 0.00 0.00 0.00 4.00
140 141 2.262915 CTCGGTCTCACTGGCACC 59.737 66.667 0.00 0.00 0.00 5.01
141 142 2.262915 CCTCGGTCTCACTGGCAC 59.737 66.667 0.00 0.00 0.00 5.01
142 143 3.695606 GCCTCGGTCTCACTGGCA 61.696 66.667 0.00 0.00 42.79 4.92
143 144 4.803426 CGCCTCGGTCTCACTGGC 62.803 72.222 0.00 0.00 40.14 4.85
144 145 4.135153 CCGCCTCGGTCTCACTGG 62.135 72.222 0.00 0.00 42.73 4.00
155 156 2.813908 AACATCGAACGCCGCCTC 60.814 61.111 0.00 0.00 38.37 4.70
156 157 3.118454 CAACATCGAACGCCGCCT 61.118 61.111 0.00 0.00 38.37 5.52
157 158 4.160635 CCAACATCGAACGCCGCC 62.161 66.667 0.00 0.00 38.37 6.13
158 159 3.083600 CTCCAACATCGAACGCCGC 62.084 63.158 0.00 0.00 38.37 6.53
159 160 2.452813 CCTCCAACATCGAACGCCG 61.453 63.158 0.00 0.00 40.25 6.46
160 161 2.750888 GCCTCCAACATCGAACGCC 61.751 63.158 0.00 0.00 0.00 5.68
161 162 2.785258 GCCTCCAACATCGAACGC 59.215 61.111 0.00 0.00 0.00 4.84
162 163 2.452813 CCGCCTCCAACATCGAACG 61.453 63.158 0.00 0.00 0.00 3.95
163 164 0.953960 AACCGCCTCCAACATCGAAC 60.954 55.000 0.00 0.00 0.00 3.95
164 165 0.953471 CAACCGCCTCCAACATCGAA 60.953 55.000 0.00 0.00 0.00 3.71
165 166 1.375396 CAACCGCCTCCAACATCGA 60.375 57.895 0.00 0.00 0.00 3.59
166 167 2.398554 CCAACCGCCTCCAACATCG 61.399 63.158 0.00 0.00 0.00 3.84
167 168 2.046285 CCCAACCGCCTCCAACATC 61.046 63.158 0.00 0.00 0.00 3.06
168 169 2.035626 CCCAACCGCCTCCAACAT 59.964 61.111 0.00 0.00 0.00 2.71
169 170 4.278513 CCCCAACCGCCTCCAACA 62.279 66.667 0.00 0.00 0.00 3.33
170 171 3.282374 ATCCCCAACCGCCTCCAAC 62.282 63.158 0.00 0.00 0.00 3.77
171 172 2.938798 ATCCCCAACCGCCTCCAA 60.939 61.111 0.00 0.00 0.00 3.53
172 173 3.407967 GATCCCCAACCGCCTCCA 61.408 66.667 0.00 0.00 0.00 3.86
173 174 4.547367 CGATCCCCAACCGCCTCC 62.547 72.222 0.00 0.00 0.00 4.30
174 175 3.447025 CTCGATCCCCAACCGCCTC 62.447 68.421 0.00 0.00 0.00 4.70
175 176 3.470888 CTCGATCCCCAACCGCCT 61.471 66.667 0.00 0.00 0.00 5.52
176 177 4.547367 CCTCGATCCCCAACCGCC 62.547 72.222 0.00 0.00 0.00 6.13
177 178 4.547367 CCCTCGATCCCCAACCGC 62.547 72.222 0.00 0.00 0.00 5.68
178 179 2.363975 TTCCCTCGATCCCCAACCG 61.364 63.158 0.00 0.00 0.00 4.44
179 180 1.223763 GTTCCCTCGATCCCCAACC 59.776 63.158 0.00 0.00 0.00 3.77
180 181 1.413077 CTAGTTCCCTCGATCCCCAAC 59.587 57.143 0.00 0.00 0.00 3.77
181 182 1.007963 ACTAGTTCCCTCGATCCCCAA 59.992 52.381 0.00 0.00 0.00 4.12
182 183 0.635009 ACTAGTTCCCTCGATCCCCA 59.365 55.000 0.00 0.00 0.00 4.96
183 184 1.041437 CACTAGTTCCCTCGATCCCC 58.959 60.000 0.00 0.00 0.00 4.81
184 185 1.041437 CCACTAGTTCCCTCGATCCC 58.959 60.000 0.00 0.00 0.00 3.85
185 186 0.389757 GCCACTAGTTCCCTCGATCC 59.610 60.000 0.00 0.00 0.00 3.36
186 187 0.030908 CGCCACTAGTTCCCTCGATC 59.969 60.000 0.00 0.00 0.00 3.69
187 188 1.392710 CCGCCACTAGTTCCCTCGAT 61.393 60.000 0.00 0.00 0.00 3.59
188 189 2.050350 CCGCCACTAGTTCCCTCGA 61.050 63.158 0.00 0.00 0.00 4.04
189 190 2.494918 CCGCCACTAGTTCCCTCG 59.505 66.667 0.00 0.00 0.00 4.63
190 191 2.187163 GCCGCCACTAGTTCCCTC 59.813 66.667 0.00 0.00 0.00 4.30
191 192 2.284699 AGCCGCCACTAGTTCCCT 60.285 61.111 0.00 0.00 0.00 4.20
192 193 2.125106 CAGCCGCCACTAGTTCCC 60.125 66.667 0.00 0.00 0.00 3.97
193 194 2.125106 CCAGCCGCCACTAGTTCC 60.125 66.667 0.00 0.00 0.00 3.62
194 195 2.125106 CCCAGCCGCCACTAGTTC 60.125 66.667 0.00 0.00 0.00 3.01
195 196 3.717294 CCCCAGCCGCCACTAGTT 61.717 66.667 0.00 0.00 0.00 2.24
196 197 4.715130 TCCCCAGCCGCCACTAGT 62.715 66.667 0.00 0.00 0.00 2.57
197 198 3.854669 CTCCCCAGCCGCCACTAG 61.855 72.222 0.00 0.00 0.00 2.57
198 199 4.715130 ACTCCCCAGCCGCCACTA 62.715 66.667 0.00 0.00 0.00 2.74
204 205 4.135153 CACTCGACTCCCCAGCCG 62.135 72.222 0.00 0.00 0.00 5.52
205 206 2.680352 TCACTCGACTCCCCAGCC 60.680 66.667 0.00 0.00 0.00 4.85
206 207 1.662438 CTCTCACTCGACTCCCCAGC 61.662 65.000 0.00 0.00 0.00 4.85
207 208 0.034960 TCTCTCACTCGACTCCCCAG 60.035 60.000 0.00 0.00 0.00 4.45
208 209 0.404426 TTCTCTCACTCGACTCCCCA 59.596 55.000 0.00 0.00 0.00 4.96
209 210 1.546961 TTTCTCTCACTCGACTCCCC 58.453 55.000 0.00 0.00 0.00 4.81
210 211 3.662247 TTTTTCTCTCACTCGACTCCC 57.338 47.619 0.00 0.00 0.00 4.30
228 229 1.279846 CAATCATGCCAGCCCCTTTTT 59.720 47.619 0.00 0.00 0.00 1.94
229 230 0.906775 CAATCATGCCAGCCCCTTTT 59.093 50.000 0.00 0.00 0.00 2.27
230 231 0.252375 ACAATCATGCCAGCCCCTTT 60.252 50.000 0.00 0.00 0.00 3.11
231 232 0.252375 AACAATCATGCCAGCCCCTT 60.252 50.000 0.00 0.00 0.00 3.95
232 233 0.252375 AAACAATCATGCCAGCCCCT 60.252 50.000 0.00 0.00 0.00 4.79
233 234 0.614812 AAAACAATCATGCCAGCCCC 59.385 50.000 0.00 0.00 0.00 5.80
234 235 1.275856 TGAAAACAATCATGCCAGCCC 59.724 47.619 0.00 0.00 0.00 5.19
235 236 2.747396 TGAAAACAATCATGCCAGCC 57.253 45.000 0.00 0.00 0.00 4.85
242 243 4.502171 TCGCACACATGAAAACAATCAT 57.498 36.364 0.00 0.00 40.64 2.45
243 244 3.978718 TCGCACACATGAAAACAATCA 57.021 38.095 0.00 0.00 0.00 2.57
244 245 3.609373 CCATCGCACACATGAAAACAATC 59.391 43.478 0.00 0.00 0.00 2.67
245 246 3.005684 ACCATCGCACACATGAAAACAAT 59.994 39.130 0.00 0.00 0.00 2.71
246 247 2.360483 ACCATCGCACACATGAAAACAA 59.640 40.909 0.00 0.00 0.00 2.83
247 248 1.952990 ACCATCGCACACATGAAAACA 59.047 42.857 0.00 0.00 0.00 2.83
248 249 2.287547 ACACCATCGCACACATGAAAAC 60.288 45.455 0.00 0.00 0.00 2.43
249 250 1.952990 ACACCATCGCACACATGAAAA 59.047 42.857 0.00 0.00 0.00 2.29
250 251 1.603456 ACACCATCGCACACATGAAA 58.397 45.000 0.00 0.00 0.00 2.69
251 252 1.535028 GAACACCATCGCACACATGAA 59.465 47.619 0.00 0.00 0.00 2.57
252 253 1.155889 GAACACCATCGCACACATGA 58.844 50.000 0.00 0.00 0.00 3.07
253 254 0.179217 CGAACACCATCGCACACATG 60.179 55.000 0.00 0.00 35.85 3.21
254 255 1.298157 CCGAACACCATCGCACACAT 61.298 55.000 0.00 0.00 41.40 3.21
255 256 1.958715 CCGAACACCATCGCACACA 60.959 57.895 0.00 0.00 41.40 3.72
256 257 2.860293 CCGAACACCATCGCACAC 59.140 61.111 0.00 0.00 41.40 3.82
257 258 3.047280 GCCGAACACCATCGCACA 61.047 61.111 0.00 0.00 41.40 4.57
258 259 2.740714 GAGCCGAACACCATCGCAC 61.741 63.158 0.00 0.00 41.40 5.34
259 260 2.434185 GAGCCGAACACCATCGCA 60.434 61.111 0.00 0.00 41.40 5.10
260 261 3.554692 CGAGCCGAACACCATCGC 61.555 66.667 0.00 0.00 41.40 4.58
261 262 1.874019 CTCGAGCCGAACACCATCG 60.874 63.158 0.00 0.00 42.37 3.84
262 263 1.078759 CACTCGAGCCGAACACCATC 61.079 60.000 13.61 0.00 34.74 3.51
263 264 1.079819 CACTCGAGCCGAACACCAT 60.080 57.895 13.61 0.00 34.74 3.55
264 265 2.338620 CACTCGAGCCGAACACCA 59.661 61.111 13.61 0.00 34.74 4.17
265 266 2.430382 TTCCACTCGAGCCGAACACC 62.430 60.000 13.61 0.00 34.74 4.16
266 267 0.389948 ATTCCACTCGAGCCGAACAC 60.390 55.000 13.61 0.00 34.74 3.32
267 268 1.179152 TATTCCACTCGAGCCGAACA 58.821 50.000 13.61 0.14 34.74 3.18
268 269 2.510768 ATATTCCACTCGAGCCGAAC 57.489 50.000 13.61 0.00 34.74 3.95
269 270 2.693591 AGAATATTCCACTCGAGCCGAA 59.306 45.455 13.61 14.43 34.74 4.30
270 271 2.307768 AGAATATTCCACTCGAGCCGA 58.692 47.619 13.61 5.01 0.00 5.54
271 272 2.802787 AGAATATTCCACTCGAGCCG 57.197 50.000 13.61 3.62 0.00 5.52
272 273 5.819825 AAAAAGAATATTCCACTCGAGCC 57.180 39.130 13.61 0.00 0.00 4.70
292 293 2.103153 TATGCCACCAACCCCAAAAA 57.897 45.000 0.00 0.00 0.00 1.94
293 294 2.304180 CAATATGCCACCAACCCCAAAA 59.696 45.455 0.00 0.00 0.00 2.44
294 295 1.905215 CAATATGCCACCAACCCCAAA 59.095 47.619 0.00 0.00 0.00 3.28
295 296 1.566211 CAATATGCCACCAACCCCAA 58.434 50.000 0.00 0.00 0.00 4.12
296 297 0.325110 CCAATATGCCACCAACCCCA 60.325 55.000 0.00 0.00 0.00 4.96
297 298 0.032615 TCCAATATGCCACCAACCCC 60.033 55.000 0.00 0.00 0.00 4.95
298 299 1.688197 CATCCAATATGCCACCAACCC 59.312 52.381 0.00 0.00 0.00 4.11
299 300 2.387757 ACATCCAATATGCCACCAACC 58.612 47.619 0.00 0.00 0.00 3.77
300 301 5.789643 ATTACATCCAATATGCCACCAAC 57.210 39.130 0.00 0.00 0.00 3.77
301 302 5.304101 GGAATTACATCCAATATGCCACCAA 59.696 40.000 0.00 0.00 39.42 3.67
302 303 4.832266 GGAATTACATCCAATATGCCACCA 59.168 41.667 0.00 0.00 39.42 4.17
303 304 4.832266 TGGAATTACATCCAATATGCCACC 59.168 41.667 0.00 0.00 46.36 4.61
336 337 9.948964 AACGGTTTAAATTAAGTCACTACCTAT 57.051 29.630 0.00 0.00 0.00 2.57
337 338 9.777297 AAACGGTTTAAATTAAGTCACTACCTA 57.223 29.630 3.90 0.00 0.00 3.08
338 339 8.681486 AAACGGTTTAAATTAAGTCACTACCT 57.319 30.769 3.90 0.00 0.00 3.08
354 355 5.010213 AGCTCCTGCAAAATAAAACGGTTTA 59.990 36.000 8.33 8.33 42.74 2.01
355 356 4.055360 GCTCCTGCAAAATAAAACGGTTT 58.945 39.130 2.90 2.90 39.41 3.27
360 361 4.870363 TGTGAGCTCCTGCAAAATAAAAC 58.130 39.130 12.15 0.00 42.74 2.43
365 366 4.036027 CGATATTGTGAGCTCCTGCAAAAT 59.964 41.667 12.15 2.49 42.74 1.82
372 373 3.491342 TCTAGCGATATTGTGAGCTCCT 58.509 45.455 12.15 0.00 40.73 3.69
380 381 5.247110 ACCCATGAGATTCTAGCGATATTGT 59.753 40.000 0.00 0.00 0.00 2.71
381 382 5.728471 ACCCATGAGATTCTAGCGATATTG 58.272 41.667 0.00 0.00 0.00 1.90
383 384 6.014242 TCAAACCCATGAGATTCTAGCGATAT 60.014 38.462 0.00 0.00 0.00 1.63
384 385 5.304357 TCAAACCCATGAGATTCTAGCGATA 59.696 40.000 0.00 0.00 0.00 2.92
423 424 6.058553 TCCAAGAATCATCAGAATCAGTGT 57.941 37.500 0.00 0.00 0.00 3.55
443 444 3.245016 ACTTGCTTCTCCAACATCATCCA 60.245 43.478 0.00 0.00 0.00 3.41
447 448 2.416747 CGACTTGCTTCTCCAACATCA 58.583 47.619 0.00 0.00 0.00 3.07
448 449 1.734465 CCGACTTGCTTCTCCAACATC 59.266 52.381 0.00 0.00 0.00 3.06
451 452 1.270358 ACTCCGACTTGCTTCTCCAAC 60.270 52.381 0.00 0.00 0.00 3.77
455 456 2.734276 AGAACTCCGACTTGCTTCTC 57.266 50.000 0.00 0.00 0.00 2.87
463 464 3.477210 AAGCTGAAAAGAACTCCGACT 57.523 42.857 0.00 0.00 0.00 4.18
464 465 5.408604 TCAATAAGCTGAAAAGAACTCCGAC 59.591 40.000 0.00 0.00 0.00 4.79
466 467 5.862924 TCAATAAGCTGAAAAGAACTCCG 57.137 39.130 0.00 0.00 0.00 4.63
467 468 7.254137 GGAATCAATAAGCTGAAAAGAACTCC 58.746 38.462 0.00 0.00 0.00 3.85
469 470 6.153510 GGGGAATCAATAAGCTGAAAAGAACT 59.846 38.462 0.00 0.00 0.00 3.01
471 472 6.015918 TGGGGAATCAATAAGCTGAAAAGAA 58.984 36.000 0.00 0.00 0.00 2.52
492 493 1.672356 CTCAACAACCGAGCCTGGG 60.672 63.158 0.00 0.00 0.00 4.45
493 494 0.250295 TTCTCAACAACCGAGCCTGG 60.250 55.000 0.00 0.00 0.00 4.45
496 497 1.464997 GTGATTCTCAACAACCGAGCC 59.535 52.381 0.00 0.00 0.00 4.70
497 498 1.464997 GGTGATTCTCAACAACCGAGC 59.535 52.381 0.00 0.00 33.38 5.03
501 502 7.272037 TCTTTTAAGGTGATTCTCAACAACC 57.728 36.000 0.00 0.00 36.30 3.77
502 503 8.406297 AGTTCTTTTAAGGTGATTCTCAACAAC 58.594 33.333 0.00 0.00 36.30 3.32
509 510 7.912719 AGAGCTAGTTCTTTTAAGGTGATTCT 58.087 34.615 2.81 0.00 0.00 2.40
518 519 7.170998 GCACACACTTAGAGCTAGTTCTTTTAA 59.829 37.037 14.78 2.49 0.00 1.52
519 520 6.645415 GCACACACTTAGAGCTAGTTCTTTTA 59.355 38.462 14.78 0.00 0.00 1.52
529 530 1.548269 GAGGAGCACACACTTAGAGCT 59.452 52.381 0.00 0.00 38.43 4.09
532 533 4.415881 TTTTGAGGAGCACACACTTAGA 57.584 40.909 0.00 0.00 0.00 2.10
533 534 5.695851 ATTTTTGAGGAGCACACACTTAG 57.304 39.130 0.00 0.00 0.00 2.18
536 537 5.359576 TGTTTATTTTTGAGGAGCACACACT 59.640 36.000 0.00 0.00 0.00 3.55
537 538 5.458779 GTGTTTATTTTTGAGGAGCACACAC 59.541 40.000 0.00 0.00 33.68 3.82
539 540 5.687285 CAGTGTTTATTTTTGAGGAGCACAC 59.313 40.000 0.00 0.00 33.66 3.82
540 541 5.592282 TCAGTGTTTATTTTTGAGGAGCACA 59.408 36.000 0.00 0.00 0.00 4.57
541 542 6.072112 TCAGTGTTTATTTTTGAGGAGCAC 57.928 37.500 0.00 0.00 0.00 4.40
542 543 6.680810 CATCAGTGTTTATTTTTGAGGAGCA 58.319 36.000 0.00 0.00 0.00 4.26
543 544 5.574443 GCATCAGTGTTTATTTTTGAGGAGC 59.426 40.000 0.00 0.00 0.00 4.70
544 545 6.917533 AGCATCAGTGTTTATTTTTGAGGAG 58.082 36.000 0.00 0.00 0.00 3.69
545 546 6.899393 AGCATCAGTGTTTATTTTTGAGGA 57.101 33.333 0.00 0.00 0.00 3.71
546 547 9.643693 ATTAAGCATCAGTGTTTATTTTTGAGG 57.356 29.630 0.00 0.00 32.19 3.86
556 557 9.777297 AAACCAATTTATTAAGCATCAGTGTTT 57.223 25.926 0.00 0.00 33.16 2.83
571 572 9.908152 GCGCTTATAAGGAATAAACCAATTTAT 57.092 29.630 14.28 0.00 41.82 1.40
572 573 8.354426 GGCGCTTATAAGGAATAAACCAATTTA 58.646 33.333 14.28 0.00 34.78 1.40
573 574 7.069455 AGGCGCTTATAAGGAATAAACCAATTT 59.931 33.333 14.28 0.00 29.59 1.82
574 575 6.549736 AGGCGCTTATAAGGAATAAACCAATT 59.450 34.615 14.28 0.00 29.59 2.32
575 576 6.068670 AGGCGCTTATAAGGAATAAACCAAT 58.931 36.000 14.28 0.00 29.59 3.16
576 577 5.442391 AGGCGCTTATAAGGAATAAACCAA 58.558 37.500 14.28 0.00 29.59 3.67
577 578 5.043737 AGGCGCTTATAAGGAATAAACCA 57.956 39.130 14.28 0.00 29.59 3.67
578 579 5.758924 CAAGGCGCTTATAAGGAATAAACC 58.241 41.667 14.28 1.18 29.59 3.27
579 580 5.212934 GCAAGGCGCTTATAAGGAATAAAC 58.787 41.667 14.28 0.00 37.77 2.01
580 581 4.884744 TGCAAGGCGCTTATAAGGAATAAA 59.115 37.500 14.28 0.00 43.06 1.40
586 587 5.411361 TGTATAATGCAAGGCGCTTATAAGG 59.589 40.000 14.28 5.73 43.06 2.69
587 588 6.480524 TGTATAATGCAAGGCGCTTATAAG 57.519 37.500 7.64 8.20 43.06 1.73
590 591 5.049405 GTCTTGTATAATGCAAGGCGCTTAT 60.049 40.000 7.64 4.92 42.44 1.73
596 597 6.693315 TTTAGGTCTTGTATAATGCAAGGC 57.307 37.500 10.85 9.30 44.97 4.35
599 600 9.214957 CGGATATTTAGGTCTTGTATAATGCAA 57.785 33.333 0.00 0.00 0.00 4.08
606 607 6.435292 AAGCCGGATATTTAGGTCTTGTAT 57.565 37.500 5.05 0.00 0.00 2.29
610 611 3.714798 TGGAAGCCGGATATTTAGGTCTT 59.285 43.478 5.05 0.00 0.00 3.01
613 614 5.546499 TCTTATGGAAGCCGGATATTTAGGT 59.454 40.000 5.05 0.00 32.21 3.08
614 615 6.049955 TCTTATGGAAGCCGGATATTTAGG 57.950 41.667 5.05 0.00 32.21 2.69
619 620 3.306780 CCGTTCTTATGGAAGCCGGATAT 60.307 47.826 5.05 0.00 43.79 1.63
620 621 2.036733 CCGTTCTTATGGAAGCCGGATA 59.963 50.000 5.05 0.00 43.79 2.59
621 622 1.202651 CCGTTCTTATGGAAGCCGGAT 60.203 52.381 5.05 0.00 43.79 4.18
622 623 0.177141 CCGTTCTTATGGAAGCCGGA 59.823 55.000 5.05 0.00 43.79 5.14
623 624 0.814010 CCCGTTCTTATGGAAGCCGG 60.814 60.000 0.00 0.00 42.19 6.13
624 625 0.107848 ACCCGTTCTTATGGAAGCCG 60.108 55.000 0.00 0.00 34.23 5.52
625 626 1.209747 AGACCCGTTCTTATGGAAGCC 59.790 52.381 0.00 0.00 34.23 4.35
626 627 2.280628 CAGACCCGTTCTTATGGAAGC 58.719 52.381 0.00 0.00 34.23 3.86
628 629 1.626321 TGCAGACCCGTTCTTATGGAA 59.374 47.619 0.00 0.00 31.54 3.53
629 630 1.207089 CTGCAGACCCGTTCTTATGGA 59.793 52.381 8.42 0.00 31.54 3.41
630 631 1.656652 CTGCAGACCCGTTCTTATGG 58.343 55.000 8.42 0.00 28.96 2.74
632 633 1.276622 ACCTGCAGACCCGTTCTTAT 58.723 50.000 17.39 0.00 28.96 1.73
633 634 1.547372 GTACCTGCAGACCCGTTCTTA 59.453 52.381 17.39 0.00 28.96 2.10
634 635 0.320697 GTACCTGCAGACCCGTTCTT 59.679 55.000 17.39 0.00 28.96 2.52
635 636 0.542232 AGTACCTGCAGACCCGTTCT 60.542 55.000 17.39 4.70 33.33 3.01
636 637 1.135170 GTAGTACCTGCAGACCCGTTC 60.135 57.143 17.39 2.17 0.00 3.95
637 638 0.893447 GTAGTACCTGCAGACCCGTT 59.107 55.000 17.39 0.00 0.00 4.44
638 639 0.251474 TGTAGTACCTGCAGACCCGT 60.251 55.000 17.39 6.95 0.00 5.28
640 641 3.629142 AATTGTAGTACCTGCAGACCC 57.371 47.619 17.39 1.48 0.00 4.46
641 642 4.575885 TGAAATTGTAGTACCTGCAGACC 58.424 43.478 17.39 1.88 0.00 3.85
642 643 5.701290 ACTTGAAATTGTAGTACCTGCAGAC 59.299 40.000 17.39 6.33 0.00 3.51
643 644 5.700832 CACTTGAAATTGTAGTACCTGCAGA 59.299 40.000 17.39 0.00 0.00 4.26
644 645 5.617751 GCACTTGAAATTGTAGTACCTGCAG 60.618 44.000 6.78 6.78 0.00 4.41
645 646 4.215399 GCACTTGAAATTGTAGTACCTGCA 59.785 41.667 0.00 0.00 0.00 4.41
648 649 7.524717 AAATGCACTTGAAATTGTAGTACCT 57.475 32.000 0.00 0.00 0.00 3.08
649 650 9.124807 GTAAAATGCACTTGAAATTGTAGTACC 57.875 33.333 0.00 0.00 0.00 3.34
650 651 9.893305 AGTAAAATGCACTTGAAATTGTAGTAC 57.107 29.630 0.00 0.00 0.00 2.73
673 2763 6.016610 GGGTGTTTGACTTGCTTAAATGAGTA 60.017 38.462 0.00 0.00 0.00 2.59
705 2795 4.494484 GGAGCTGTGTTTGACTTGTTTTT 58.506 39.130 0.00 0.00 0.00 1.94
706 2796 3.119137 GGGAGCTGTGTTTGACTTGTTTT 60.119 43.478 0.00 0.00 0.00 2.43
707 2797 2.427095 GGGAGCTGTGTTTGACTTGTTT 59.573 45.455 0.00 0.00 0.00 2.83
708 2798 2.024414 GGGAGCTGTGTTTGACTTGTT 58.976 47.619 0.00 0.00 0.00 2.83
709 2799 1.680338 GGGAGCTGTGTTTGACTTGT 58.320 50.000 0.00 0.00 0.00 3.16
714 2804 0.389817 CGATCGGGAGCTGTGTTTGA 60.390 55.000 7.38 0.00 0.00 2.69
732 2822 0.429363 GGTTGTTTTTGCGCGAATCG 59.571 50.000 12.10 0.00 42.12 3.34
740 2830 0.593008 GTCGGACCGGTTGTTTTTGC 60.593 55.000 15.25 0.00 0.00 3.68
763 2853 0.461693 GTGCTGACTGGGAGCTGATC 60.462 60.000 0.00 0.00 37.35 2.92
818 2908 1.318576 CGAGAAAGGGGTTTGTTGCT 58.681 50.000 0.00 0.00 0.00 3.91
819 2909 0.318699 GCGAGAAAGGGGTTTGTTGC 60.319 55.000 0.00 0.00 0.00 4.17
820 2910 0.313987 GGCGAGAAAGGGGTTTGTTG 59.686 55.000 0.00 0.00 0.00 3.33
864 2954 3.362399 ATGTCGCCGTCAGGAGCAG 62.362 63.158 0.00 0.00 41.02 4.24
865 2955 3.381983 ATGTCGCCGTCAGGAGCA 61.382 61.111 0.00 0.00 41.02 4.26
866 2956 2.887568 CATGTCGCCGTCAGGAGC 60.888 66.667 0.00 0.00 41.02 4.70
868 2958 2.571757 GACATGTCGCCGTCAGGA 59.428 61.111 10.69 0.00 41.02 3.86
869 2959 2.509336 GGACATGTCGCCGTCAGG 60.509 66.667 19.33 0.00 41.62 3.86
870 2960 1.517257 GAGGACATGTCGCCGTCAG 60.517 63.158 19.33 0.00 33.66 3.51
913 3003 2.589442 AAGGAACCGCACGCGAAA 60.589 55.556 15.93 0.00 42.83 3.46
914 3004 3.039588 GAAGGAACCGCACGCGAA 61.040 61.111 15.93 0.00 42.83 4.70
985 3075 3.853330 CATTGCGGCGGTGACTCG 61.853 66.667 9.78 0.00 0.00 4.18
1008 3098 4.814041 AGCAGGAGGAGAGGGGGC 62.814 72.222 0.00 0.00 0.00 5.80
1426 3520 0.745845 GCGTTCCAGCTGACCATGAT 60.746 55.000 17.39 0.00 0.00 2.45
1498 3592 2.049433 CGCGACGTCCTTGGAGTT 60.049 61.111 10.58 0.00 0.00 3.01
1622 3721 8.311650 ACTACACTACATTTGTTCAATCAGTC 57.688 34.615 0.00 0.00 0.00 3.51
1659 3758 5.241662 AGTGAAAGGATTAGACAAGTCAGC 58.758 41.667 2.72 0.00 0.00 4.26
1692 3805 6.074623 CGAATGTGTGTGCTTCTAGTATCATC 60.075 42.308 0.00 0.00 0.00 2.92
1706 3827 0.110056 GCTGAAGGCGAATGTGTGTG 60.110 55.000 0.00 0.00 0.00 3.82
1717 3880 3.274288 ACTAATAACAGCAGCTGAAGGC 58.726 45.455 29.70 0.63 42.19 4.35
1718 3881 4.697352 ACAACTAATAACAGCAGCTGAAGG 59.303 41.667 29.70 13.62 35.18 3.46
1720 3883 6.934645 AGTAACAACTAATAACAGCAGCTGAA 59.065 34.615 29.70 16.32 35.18 3.02
1742 3905 4.555313 CGAGTGAACCGACAACAAGTAGTA 60.555 45.833 0.00 0.00 0.00 1.82
1743 3906 3.714391 GAGTGAACCGACAACAAGTAGT 58.286 45.455 0.00 0.00 0.00 2.73
1744 3907 2.724690 CGAGTGAACCGACAACAAGTAG 59.275 50.000 0.00 0.00 0.00 2.57
1755 3918 1.687628 GTTCTGTCTCGAGTGAACCG 58.312 55.000 24.12 10.84 34.47 4.44
1773 3936 9.998106 ATTGCTAATCTTACCAAATAGTATCGT 57.002 29.630 0.00 0.00 0.00 3.73
1781 3944 8.579850 TGAACTGATTGCTAATCTTACCAAAT 57.420 30.769 9.34 0.00 38.72 2.32
1782 3945 7.994425 TGAACTGATTGCTAATCTTACCAAA 57.006 32.000 9.34 0.00 38.72 3.28
1783 3946 9.679661 TTATGAACTGATTGCTAATCTTACCAA 57.320 29.630 9.34 0.00 38.72 3.67
1784 3947 9.851686 ATTATGAACTGATTGCTAATCTTACCA 57.148 29.630 9.34 4.80 38.72 3.25
1894 4057 7.276658 TCAGTGATTCTACCAAAGTGTGTTTA 58.723 34.615 0.00 0.00 0.00 2.01
1947 4110 8.681486 AGAATGCAAGCATATATCAAGTAACA 57.319 30.769 8.12 0.00 35.31 2.41
2040 4203 4.345859 TTCCGTCATTGTTAGGAGTGTT 57.654 40.909 0.00 0.00 33.89 3.32
2060 4223 6.016360 TGTTGTTTGAATCCTCGATGTCAATT 60.016 34.615 0.00 0.00 30.51 2.32
2219 4382 4.104776 TCTCAAAGTTGAAAAAGCTTGCG 58.895 39.130 0.00 0.00 36.64 4.85
2390 4744 5.587388 CCTCAAAGTGGCAATCAACATAT 57.413 39.130 0.00 0.00 0.00 1.78
2450 4804 4.499116 TGGCCTAGGAGGGGAGCC 62.499 72.222 14.75 4.83 44.13 4.70
2451 4805 2.366972 TTGGCCTAGGAGGGGAGC 60.367 66.667 14.75 0.00 35.37 4.70
2464 4818 8.197439 ACCTGTTAATTATTATCTTTGCTTGGC 58.803 33.333 0.00 0.00 0.00 4.52
2473 4827 9.561069 CCAAGCACTACCTGTTAATTATTATCT 57.439 33.333 0.00 0.00 0.00 1.98
2474 4828 8.784043 CCCAAGCACTACCTGTTAATTATTATC 58.216 37.037 0.00 0.00 0.00 1.75
2475 4829 7.230712 GCCCAAGCACTACCTGTTAATTATTAT 59.769 37.037 0.00 0.00 39.53 1.28
2603 4958 4.141892 CCAAATCAGGATGCTTAAATGGCA 60.142 41.667 0.00 0.00 44.05 4.92
2605 4960 5.595542 TCTCCAAATCAGGATGCTTAAATGG 59.404 40.000 0.00 0.00 36.99 3.16
2667 5022 3.311106 AGTGCGCATTTTGATGTTTGAG 58.689 40.909 15.91 0.00 0.00 3.02
2805 5160 5.668558 AAACACCGTTTTCTGATACTGAC 57.331 39.130 0.00 0.00 0.00 3.51
2963 5318 0.882042 CAGCATCATACCGCCAGTCC 60.882 60.000 0.00 0.00 0.00 3.85
3054 5409 0.459759 GGAAGAGGAGCGGGTTAACG 60.460 60.000 0.00 0.00 0.00 3.18
3333 5708 2.432510 CCAAGACAGGGACTCTCCATAC 59.567 54.545 0.00 0.00 38.64 2.39
3341 5716 1.056700 ACACAGCCAAGACAGGGACT 61.057 55.000 0.00 0.00 43.88 3.85
3342 5717 0.179018 AACACAGCCAAGACAGGGAC 60.179 55.000 0.00 0.00 0.00 4.46
3349 5727 0.761187 AGCTCAGAACACAGCCAAGA 59.239 50.000 0.00 0.00 36.17 3.02
3387 5765 1.217511 CGGCTCACATGACTCAGCT 59.782 57.895 0.00 0.00 32.14 4.24
3388 5766 0.179089 ATCGGCTCACATGACTCAGC 60.179 55.000 0.00 0.37 0.00 4.26
3389 5767 2.306341 AATCGGCTCACATGACTCAG 57.694 50.000 0.00 0.00 0.00 3.35
3390 5768 2.349590 CAAATCGGCTCACATGACTCA 58.650 47.619 0.00 0.00 0.00 3.41
3391 5769 1.063174 GCAAATCGGCTCACATGACTC 59.937 52.381 0.00 0.00 0.00 3.36
3392 5770 1.089920 GCAAATCGGCTCACATGACT 58.910 50.000 0.00 0.00 0.00 3.41
3393 5771 0.804364 TGCAAATCGGCTCACATGAC 59.196 50.000 0.00 0.00 34.04 3.06
3394 5772 0.804364 GTGCAAATCGGCTCACATGA 59.196 50.000 0.00 0.00 34.04 3.07
3395 5773 0.806868 AGTGCAAATCGGCTCACATG 59.193 50.000 0.00 0.00 34.04 3.21
3450 5828 7.621991 CATACTAAACTTCATCATTCGTCCAC 58.378 38.462 0.00 0.00 0.00 4.02
3460 5838 6.591834 ACTGTCACAGCATACTAAACTTCATC 59.408 38.462 4.13 0.00 34.37 2.92
3481 5859 4.613925 TTGATCAGCTCTCTCAAACTGT 57.386 40.909 0.00 0.00 0.00 3.55
3490 5868 2.355132 CACAAGCCATTGATCAGCTCTC 59.645 50.000 8.26 0.00 38.83 3.20
3524 5902 9.525826 AGAAATGATTCTGGAGTATGAAAAACT 57.474 29.630 0.00 0.00 44.25 2.66
3525 5903 9.780413 GAGAAATGATTCTGGAGTATGAAAAAC 57.220 33.333 0.00 0.00 45.91 2.43
3557 5937 1.144913 TCTACTTGGCCTGGCTTTTGT 59.855 47.619 19.68 14.13 0.00 2.83
3569 5949 6.106648 TGAATGATAGCTCCATCTACTTGG 57.893 41.667 0.00 0.00 38.18 3.61
3590 5970 7.173218 ACTTCTACGCTCAAATCTGAAAAATGA 59.827 33.333 0.00 0.00 0.00 2.57
3603 5983 6.328641 ACTTCTAGAAACTTCTACGCTCAA 57.671 37.500 6.63 0.00 38.70 3.02
3668 6050 9.304731 CAAAAACTGACATGAAATTCTCTCAAA 57.695 29.630 0.00 0.00 0.00 2.69
3669 6051 8.469200 ACAAAAACTGACATGAAATTCTCTCAA 58.531 29.630 0.00 0.00 0.00 3.02
3670 6052 7.999679 ACAAAAACTGACATGAAATTCTCTCA 58.000 30.769 0.00 0.00 0.00 3.27
3671 6053 8.862550 AACAAAAACTGACATGAAATTCTCTC 57.137 30.769 0.00 0.00 0.00 3.20
3683 6065 9.255304 GCCATATTTCTTAAACAAAAACTGACA 57.745 29.630 0.00 0.00 0.00 3.58
3684 6066 9.255304 TGCCATATTTCTTAAACAAAAACTGAC 57.745 29.630 0.00 0.00 0.00 3.51
3685 6067 9.474920 CTGCCATATTTCTTAAACAAAAACTGA 57.525 29.630 0.00 0.00 0.00 3.41
3686 6068 9.260002 ACTGCCATATTTCTTAAACAAAAACTG 57.740 29.630 0.00 0.00 0.00 3.16
3710 6100 7.667043 TGCAAGTCGTGATTTAATAAAGACT 57.333 32.000 5.27 5.27 38.89 3.24
3712 6102 9.393249 CTTTTGCAAGTCGTGATTTAATAAAGA 57.607 29.630 0.00 0.00 0.00 2.52
3731 6121 1.679139 ACTGCAGCTGTACTTTTGCA 58.321 45.000 15.27 14.75 43.62 4.08
3739 6129 7.158697 TCTTTCACTTAATTACTGCAGCTGTA 58.841 34.615 15.27 10.46 0.00 2.74
3745 6135 5.992829 TCGGTTCTTTCACTTAATTACTGCA 59.007 36.000 0.00 0.00 0.00 4.41
3747 6137 6.425721 TGGTCGGTTCTTTCACTTAATTACTG 59.574 38.462 0.00 0.00 0.00 2.74
3752 6142 6.702716 TTTTGGTCGGTTCTTTCACTTAAT 57.297 33.333 0.00 0.00 0.00 1.40
3753 6143 6.544564 AGATTTTGGTCGGTTCTTTCACTTAA 59.455 34.615 0.00 0.00 0.00 1.85
3754 6144 6.059484 AGATTTTGGTCGGTTCTTTCACTTA 58.941 36.000 0.00 0.00 0.00 2.24
3756 6146 4.461198 AGATTTTGGTCGGTTCTTTCACT 58.539 39.130 0.00 0.00 0.00 3.41
3760 6150 7.761038 ATTTCTAGATTTTGGTCGGTTCTTT 57.239 32.000 0.00 0.00 0.00 2.52
3765 6155 8.674607 GTGAATTATTTCTAGATTTTGGTCGGT 58.325 33.333 0.00 0.00 32.78 4.69
3844 6244 4.192429 CCCCCAAAAGAAAAGCTATGTG 57.808 45.455 0.00 0.00 0.00 3.21
3862 6262 2.643551 CTATGTGTGTGTCATTCCCCC 58.356 52.381 0.00 0.00 0.00 5.40
3865 6265 7.969536 ATATTAGCTATGTGTGTGTCATTCC 57.030 36.000 0.00 0.00 0.00 3.01
3955 6430 5.695424 ATGGACTAGTTCTAAAAGGGACC 57.305 43.478 2.07 0.00 0.00 4.46
3982 6457 8.420374 TGGAAGTAGCGAGTATATTTTCAAAG 57.580 34.615 0.00 0.00 0.00 2.77
3984 6459 7.279313 GGTTGGAAGTAGCGAGTATATTTTCAA 59.721 37.037 0.00 0.00 0.00 2.69
3985 6460 6.759827 GGTTGGAAGTAGCGAGTATATTTTCA 59.240 38.462 0.00 0.00 0.00 2.69
3992 6467 2.694109 GGAGGTTGGAAGTAGCGAGTAT 59.306 50.000 0.00 0.00 0.00 2.12
3993 6468 2.097825 GGAGGTTGGAAGTAGCGAGTA 58.902 52.381 0.00 0.00 0.00 2.59
3995 6470 0.179134 CGGAGGTTGGAAGTAGCGAG 60.179 60.000 0.00 0.00 0.00 5.03
3996 6471 1.888018 CGGAGGTTGGAAGTAGCGA 59.112 57.895 0.00 0.00 0.00 4.93
3997 6472 4.496670 CGGAGGTTGGAAGTAGCG 57.503 61.111 0.00 0.00 0.00 4.26
4033 6552 2.435805 TGGGCTATGCTAGGAAGAAGTG 59.564 50.000 0.00 0.00 0.00 3.16
4042 6561 2.555199 GTCAGTGTTGGGCTATGCTAG 58.445 52.381 0.00 0.00 0.00 3.42
4047 6566 1.705186 ACTTGGTCAGTGTTGGGCTAT 59.295 47.619 0.00 0.00 32.83 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.