Multiple sequence alignment - TraesCS5D01G271800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G271800 chr5D 100.000 2549 0 0 1 2549 375310258 375307710 0.000000e+00 4708.0
1 TraesCS5D01G271800 chr5A 90.805 1827 116 30 758 2549 476666930 476665121 0.000000e+00 2396.0
2 TraesCS5D01G271800 chr5A 85.455 715 62 21 46 734 476667702 476667004 0.000000e+00 706.0
3 TraesCS5D01G271800 chr5A 97.917 48 1 0 1 48 476667766 476667719 1.630000e-12 84.2
4 TraesCS5D01G271800 chr5B 94.425 1130 50 9 890 2009 448129547 448128421 0.000000e+00 1725.0
5 TraesCS5D01G271800 chr5B 86.993 715 61 21 46 734 448130526 448129818 0.000000e+00 776.0
6 TraesCS5D01G271800 chr5B 83.773 493 52 6 2070 2547 448128420 448127941 2.330000e-120 442.0
7 TraesCS5D01G271800 chr7B 88.889 180 15 4 1282 1457 191904434 191904256 1.540000e-52 217.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G271800 chr5D 375307710 375310258 2548 True 4708.000000 4708 100.000000 1 2549 1 chr5D.!!$R1 2548
1 TraesCS5D01G271800 chr5A 476665121 476667766 2645 True 1062.066667 2396 91.392333 1 2549 3 chr5A.!!$R1 2548
2 TraesCS5D01G271800 chr5B 448127941 448130526 2585 True 981.000000 1725 88.397000 46 2547 3 chr5B.!!$R1 2501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 980 0.037046 TCGGCGGTCCCTTTTAGAAC 60.037 55.0 7.21 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1890 2063 0.105504 AAGCCCTCCAAAAGCAAGGT 60.106 50.0 0.0 0.0 0.0 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
200 221 1.276989 CCAATCCCAAACAGCATGCTT 59.723 47.619 19.98 7.04 42.53 3.91
205 226 2.557924 TCCCAAACAGCATGCTTTACTG 59.442 45.455 19.98 12.68 42.53 2.74
239 263 1.765314 GCATGTATGGAGAGTCCCTGT 59.235 52.381 0.00 0.00 35.03 4.00
255 279 1.202687 CCTGTCTTGGCTGTGTTCTGA 60.203 52.381 0.00 0.00 0.00 3.27
281 305 6.791887 TTGAATTCAAGACTGTAGAAGCTG 57.208 37.500 16.91 0.00 0.00 4.24
282 306 6.101650 TGAATTCAAGACTGTAGAAGCTGA 57.898 37.500 5.45 0.00 0.00 4.26
283 307 6.162079 TGAATTCAAGACTGTAGAAGCTGAG 58.838 40.000 5.45 0.00 0.00 3.35
284 308 5.736951 ATTCAAGACTGTAGAAGCTGAGT 57.263 39.130 0.00 0.00 0.00 3.41
285 309 4.775058 TCAAGACTGTAGAAGCTGAGTC 57.225 45.455 0.00 0.00 35.97 3.36
340 364 4.714632 TCAAGTGAACCTTCCACCTAAAG 58.285 43.478 0.00 0.00 35.23 1.85
371 395 7.010460 CGAATGATGAAGTTTAGTATGCTGTGA 59.990 37.037 0.00 0.00 0.00 3.58
380 404 6.425114 AGTTTAGTATGCTGTGACAGTTTGAG 59.575 38.462 14.82 0.00 33.43 3.02
414 438 6.491745 TCAATGGCTTGTGTTTTGTCCTATTA 59.508 34.615 0.00 0.00 33.87 0.98
415 439 5.957842 TGGCTTGTGTTTTGTCCTATTAG 57.042 39.130 0.00 0.00 0.00 1.73
447 473 5.039645 ACTCCAGAATCATTTCTCCCCTAA 58.960 41.667 0.00 0.00 40.28 2.69
459 485 0.251608 TCCCCTAACAAAAGCCAGGC 60.252 55.000 1.84 1.84 0.00 4.85
480 506 4.263243 GGCCAAGTAGATGGAGCTATCATT 60.263 45.833 0.00 0.00 43.54 2.57
493 519 8.529424 TGGAGCTATCATTCATTTTTCAGATT 57.471 30.769 0.00 0.00 0.00 2.40
544 572 8.861033 TTGCTGATATATTGACAAAAGAATGC 57.139 30.769 0.00 0.00 0.00 3.56
587 623 9.305925 GAGAGAATTTCATGTCAGTTTTTGTTT 57.694 29.630 0.00 0.00 0.00 2.83
600 636 9.255304 GTCAGTTTTTGTTTAAGAAATATGGCA 57.745 29.630 0.00 0.00 0.00 4.92
602 638 9.260002 CAGTTTTTGTTTAAGAAATATGGCAGT 57.740 29.630 0.00 0.00 0.00 4.40
621 657 6.653320 TGGCAGTCTTTATTAAATCACGACTT 59.347 34.615 6.21 0.00 0.00 3.01
629 665 9.180678 CTTTATTAAATCACGACTTGCAAAAGT 57.819 29.630 0.00 0.00 35.34 2.66
635 671 2.287915 CACGACTTGCAAAAGTACAGCT 59.712 45.455 0.00 0.00 32.22 4.24
637 673 2.654987 GACTTGCAAAAGTACAGCTGC 58.345 47.619 15.27 0.00 32.22 5.25
642 678 3.210227 TGCAAAAGTACAGCTGCAGTAA 58.790 40.909 15.27 0.00 39.77 2.24
643 679 3.820467 TGCAAAAGTACAGCTGCAGTAAT 59.180 39.130 15.27 2.78 39.77 1.89
644 680 4.278170 TGCAAAAGTACAGCTGCAGTAATT 59.722 37.500 15.27 11.30 39.77 1.40
646 682 6.016693 TGCAAAAGTACAGCTGCAGTAATTAA 60.017 34.615 15.27 3.18 39.77 1.40
650 686 6.037786 AGTACAGCTGCAGTAATTAAGTGA 57.962 37.500 15.27 0.00 0.00 3.41
655 691 6.486657 ACAGCTGCAGTAATTAAGTGAAAGAA 59.513 34.615 15.27 0.00 0.00 2.52
755 801 3.578282 ACACATAGCTTTTCTTTTGGGGG 59.422 43.478 0.00 0.00 0.00 5.40
770 866 3.670105 GGGGGAATGACACACACAT 57.330 52.632 0.00 0.00 0.00 3.21
772 868 2.643551 GGGGGAATGACACACACATAG 58.356 52.381 0.00 0.00 0.00 2.23
781 877 9.489084 GGAATGACACACACATAGCTAATATTA 57.511 33.333 0.00 0.00 0.00 0.98
853 974 4.583086 TTTTTCGGCGGTCCCTTT 57.417 50.000 7.21 0.00 0.00 3.11
855 976 1.978454 TTTTTCGGCGGTCCCTTTTA 58.022 45.000 7.21 0.00 0.00 1.52
856 977 1.525941 TTTTCGGCGGTCCCTTTTAG 58.474 50.000 7.21 0.00 0.00 1.85
859 980 0.037046 TCGGCGGTCCCTTTTAGAAC 60.037 55.000 7.21 0.00 0.00 3.01
862 983 2.737679 CGGCGGTCCCTTTTAGAACTAG 60.738 54.545 0.00 0.00 0.00 2.57
864 985 3.519579 GCGGTCCCTTTTAGAACTAGTC 58.480 50.000 0.00 0.00 0.00 2.59
866 987 3.512724 CGGTCCCTTTTAGAACTAGTCCA 59.487 47.826 0.00 0.00 0.00 4.02
868 989 5.361857 CGGTCCCTTTTAGAACTAGTCCATA 59.638 44.000 0.00 0.00 0.00 2.74
872 993 9.327628 GTCCCTTTTAGAACTAGTCCATATTTC 57.672 37.037 0.00 0.00 0.00 2.17
874 995 9.907229 CCCTTTTAGAACTAGTCCATATTTCTT 57.093 33.333 0.00 0.00 35.60 2.52
923 1088 0.106669 GGCCCACTAAAGATCACCCC 60.107 60.000 0.00 0.00 0.00 4.95
932 1097 3.441500 AAAGATCACCCCACTTCTTCC 57.558 47.619 0.00 0.00 0.00 3.46
937 1102 0.984230 CACCCCACTTCTTCCTAGCA 59.016 55.000 0.00 0.00 0.00 3.49
1472 1644 2.748647 TGTCCGAGTGATCCGCGA 60.749 61.111 8.23 0.00 0.00 5.87
1509 1681 0.965866 GCCTCCAAACCTAGGTTGCC 60.966 60.000 27.75 8.93 38.47 4.52
1679 1852 0.706433 AAATGCCCTGTCATGTCCCT 59.294 50.000 0.00 0.00 0.00 4.20
1691 1864 5.144100 TGTCATGTCCCTAAACATTTTGGT 58.856 37.500 4.50 0.00 37.78 3.67
1692 1865 5.600484 TGTCATGTCCCTAAACATTTTGGTT 59.400 36.000 4.50 0.00 37.78 3.67
1702 1875 1.001815 ACATTTTGGTTTGTCTCGGCG 60.002 47.619 0.00 0.00 0.00 6.46
1751 1924 8.962884 ATTTATTTCCTTGGTCATAATTTGCC 57.037 30.769 0.00 0.00 0.00 4.52
1776 1949 2.093869 TGCTTTCGGGAGCGTAATTAGT 60.094 45.455 6.48 0.00 45.64 2.24
1778 1951 4.202182 TGCTTTCGGGAGCGTAATTAGTAT 60.202 41.667 6.48 0.00 45.64 2.12
1810 1983 1.663135 GTCTCTCTTCGCCTGAAATGC 59.337 52.381 0.00 0.00 32.66 3.56
1910 2084 1.146982 ACCTTGCTTTTGGAGGGCTTA 59.853 47.619 0.00 0.00 40.67 3.09
1920 2094 2.124411 TGGAGGGCTTAGGTATTGTCC 58.876 52.381 0.00 0.00 0.00 4.02
1925 2099 2.104963 GGGCTTAGGTATTGTCCCTCTG 59.895 54.545 0.00 0.00 33.35 3.35
2027 2201 9.527157 TGATCAGGACCTATCTTTATAGAAGAG 57.473 37.037 0.00 0.00 37.84 2.85
2032 2206 8.729047 AGGACCTATCTTTATAGAAGAGACAGA 58.271 37.037 0.00 0.00 37.84 3.41
2077 2252 7.305474 ACTAAATAAATTTGAGTCTTGGCACG 58.695 34.615 0.00 0.00 0.00 5.34
2083 2258 2.281070 AGTCTTGGCACGTGCTGG 60.281 61.111 36.84 25.74 41.70 4.85
2106 2284 6.120220 GGAAGCTTGGCCTTTATTTCTACTA 58.880 40.000 2.10 0.00 0.00 1.82
2179 2357 5.798934 TGTTTGAACATTTGTTGCAAATTGC 59.201 32.000 11.58 11.58 38.56 3.56
2199 2377 3.565902 TGCGATGAACCATGTTGTGTAAA 59.434 39.130 0.00 0.00 0.00 2.01
2244 2424 8.128582 TCATGAACAGTTACACACTTGAATTTC 58.871 33.333 0.00 0.00 30.92 2.17
2276 2456 6.320434 TGTGAAGGATGTGTAATCCCATTA 57.680 37.500 0.69 0.00 38.98 1.90
2284 2464 9.745018 AGGATGTGTAATCCCATTATATTTCTG 57.255 33.333 0.69 0.00 38.98 3.02
2328 2508 6.966534 ATTTGCTCTGGTTATTGGATTAGG 57.033 37.500 0.00 0.00 0.00 2.69
2338 2518 8.326765 TGGTTATTGGATTAGGAGCTAGTTAA 57.673 34.615 0.00 0.00 0.00 2.01
2448 2643 6.772770 TGCATTGATTTGTTTCATGTCAAG 57.227 33.333 0.00 0.00 32.93 3.02
2515 2710 8.812972 AGACACCATTAACTCTGAACAATAGTA 58.187 33.333 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
223 244 2.432510 CCAAGACAGGGACTCTCCATAC 59.567 54.545 0.00 0.00 38.64 2.39
231 252 1.056700 ACACAGCCAAGACAGGGACT 61.057 55.000 0.00 0.00 43.88 3.85
232 253 0.179018 AACACAGCCAAGACAGGGAC 60.179 55.000 0.00 0.00 0.00 4.46
239 263 0.761187 AGCTCAGAACACAGCCAAGA 59.239 50.000 0.00 0.00 36.17 3.02
277 301 1.217511 CGGCTCACATGACTCAGCT 59.782 57.895 0.00 0.00 32.14 4.24
278 302 0.179089 ATCGGCTCACATGACTCAGC 60.179 55.000 0.00 0.37 0.00 4.26
279 303 2.306341 AATCGGCTCACATGACTCAG 57.694 50.000 0.00 0.00 0.00 3.35
280 304 2.349590 CAAATCGGCTCACATGACTCA 58.650 47.619 0.00 0.00 0.00 3.41
281 305 1.063174 GCAAATCGGCTCACATGACTC 59.937 52.381 0.00 0.00 0.00 3.36
282 306 1.089920 GCAAATCGGCTCACATGACT 58.910 50.000 0.00 0.00 0.00 3.41
283 307 0.804364 TGCAAATCGGCTCACATGAC 59.196 50.000 0.00 0.00 34.04 3.06
284 308 0.804364 GTGCAAATCGGCTCACATGA 59.196 50.000 0.00 0.00 34.04 3.07
285 309 0.806868 AGTGCAAATCGGCTCACATG 59.193 50.000 0.00 0.00 34.04 3.21
340 364 7.621991 CATACTAAACTTCATCATTCGTCCAC 58.378 38.462 0.00 0.00 0.00 4.02
350 374 6.591834 ACTGTCACAGCATACTAAACTTCATC 59.408 38.462 4.13 0.00 34.37 2.92
371 395 4.613925 TTGATCAGCTCTCTCAAACTGT 57.386 40.909 0.00 0.00 0.00 3.55
380 404 2.355132 CACAAGCCATTGATCAGCTCTC 59.645 50.000 8.26 0.00 38.83 3.20
414 438 9.525826 AGAAATGATTCTGGAGTATGAAAAACT 57.474 29.630 0.00 0.00 44.25 2.66
415 439 9.780413 GAGAAATGATTCTGGAGTATGAAAAAC 57.220 33.333 0.00 0.00 45.91 2.43
447 473 1.144913 TCTACTTGGCCTGGCTTTTGT 59.855 47.619 19.68 14.13 0.00 2.83
459 485 6.106648 TGAATGATAGCTCCATCTACTTGG 57.893 41.667 0.00 0.00 38.18 3.61
480 506 7.173218 ACTTCTACGCTCAAATCTGAAAAATGA 59.827 33.333 0.00 0.00 0.00 2.57
493 519 6.328641 ACTTCTAGAAACTTCTACGCTCAA 57.671 37.500 6.63 0.00 38.70 3.02
558 586 9.304731 CAAAAACTGACATGAAATTCTCTCAAA 57.695 29.630 0.00 0.00 0.00 2.69
559 587 8.469200 ACAAAAACTGACATGAAATTCTCTCAA 58.531 29.630 0.00 0.00 0.00 3.02
560 588 7.999679 ACAAAAACTGACATGAAATTCTCTCA 58.000 30.769 0.00 0.00 0.00 3.27
561 589 8.862550 AACAAAAACTGACATGAAATTCTCTC 57.137 30.769 0.00 0.00 0.00 3.20
573 601 9.255304 GCCATATTTCTTAAACAAAAACTGACA 57.745 29.630 0.00 0.00 0.00 3.58
574 602 9.255304 TGCCATATTTCTTAAACAAAAACTGAC 57.745 29.630 0.00 0.00 0.00 3.51
575 603 9.474920 CTGCCATATTTCTTAAACAAAAACTGA 57.525 29.630 0.00 0.00 0.00 3.41
576 604 9.260002 ACTGCCATATTTCTTAAACAAAAACTG 57.740 29.630 0.00 0.00 0.00 3.16
600 636 7.667043 TGCAAGTCGTGATTTAATAAAGACT 57.333 32.000 5.27 5.27 38.89 3.24
602 638 9.393249 CTTTTGCAAGTCGTGATTTAATAAAGA 57.607 29.630 0.00 0.00 0.00 2.52
621 657 1.679139 ACTGCAGCTGTACTTTTGCA 58.321 45.000 15.27 14.75 43.62 4.08
629 665 7.158697 TCTTTCACTTAATTACTGCAGCTGTA 58.841 34.615 15.27 10.46 0.00 2.74
635 671 5.992829 TCGGTTCTTTCACTTAATTACTGCA 59.007 36.000 0.00 0.00 0.00 4.41
637 673 6.425721 TGGTCGGTTCTTTCACTTAATTACTG 59.574 38.462 0.00 0.00 0.00 2.74
642 678 6.702716 TTTTGGTCGGTTCTTTCACTTAAT 57.297 33.333 0.00 0.00 0.00 1.40
643 679 6.544564 AGATTTTGGTCGGTTCTTTCACTTAA 59.455 34.615 0.00 0.00 0.00 1.85
644 680 6.059484 AGATTTTGGTCGGTTCTTTCACTTA 58.941 36.000 0.00 0.00 0.00 2.24
646 682 4.461198 AGATTTTGGTCGGTTCTTTCACT 58.539 39.130 0.00 0.00 0.00 3.41
650 686 7.761038 ATTTCTAGATTTTGGTCGGTTCTTT 57.239 32.000 0.00 0.00 0.00 2.52
655 691 8.674607 GTGAATTATTTCTAGATTTTGGTCGGT 58.325 33.333 0.00 0.00 32.78 4.69
733 779 3.578282 CCCCCAAAAGAAAAGCTATGTGT 59.422 43.478 0.00 0.00 0.00 3.72
734 780 4.192429 CCCCCAAAAGAAAAGCTATGTG 57.808 45.455 0.00 0.00 0.00 3.21
752 798 2.643551 CTATGTGTGTGTCATTCCCCC 58.356 52.381 0.00 0.00 0.00 5.40
755 801 7.969536 ATATTAGCTATGTGTGTGTCATTCC 57.030 36.000 0.00 0.00 0.00 3.01
845 966 5.695424 ATGGACTAGTTCTAAAAGGGACC 57.305 43.478 2.07 0.00 0.00 4.46
872 993 8.420374 TGGAAGTAGCGAGTATATTTTCAAAG 57.580 34.615 0.00 0.00 0.00 2.77
874 995 7.279313 GGTTGGAAGTAGCGAGTATATTTTCAA 59.721 37.037 0.00 0.00 0.00 2.69
875 996 6.759827 GGTTGGAAGTAGCGAGTATATTTTCA 59.240 38.462 0.00 0.00 0.00 2.69
882 1003 2.694109 GGAGGTTGGAAGTAGCGAGTAT 59.306 50.000 0.00 0.00 0.00 2.12
883 1004 2.097825 GGAGGTTGGAAGTAGCGAGTA 58.902 52.381 0.00 0.00 0.00 2.59
885 1006 0.179134 CGGAGGTTGGAAGTAGCGAG 60.179 60.000 0.00 0.00 0.00 5.03
886 1007 1.888018 CGGAGGTTGGAAGTAGCGA 59.112 57.895 0.00 0.00 0.00 4.93
887 1008 4.496670 CGGAGGTTGGAAGTAGCG 57.503 61.111 0.00 0.00 0.00 4.26
923 1088 2.435805 TGGGCTATGCTAGGAAGAAGTG 59.564 50.000 0.00 0.00 0.00 3.16
932 1097 2.555199 GTCAGTGTTGGGCTATGCTAG 58.445 52.381 0.00 0.00 0.00 3.42
937 1102 1.705186 ACTTGGTCAGTGTTGGGCTAT 59.295 47.619 0.00 0.00 32.83 2.97
1450 1622 2.060980 GGATCACTCGGACAGGGCT 61.061 63.158 0.00 0.00 0.00 5.19
1490 1662 0.965866 GGCAACCTAGGTTTGGAGGC 60.966 60.000 24.99 22.31 36.17 4.70
1509 1681 4.637483 TTGGAAGCAAAACAGAACAGAG 57.363 40.909 0.00 0.00 0.00 3.35
1536 1708 4.518970 GGTACATCACAAGTTCACAACCAT 59.481 41.667 0.00 0.00 0.00 3.55
1672 1845 6.326323 AGACAAACCAAAATGTTTAGGGACAT 59.674 34.615 0.00 0.00 41.83 3.06
1679 1852 4.612943 GCCGAGACAAACCAAAATGTTTA 58.387 39.130 0.00 0.00 36.33 2.01
1691 1864 4.751060 AGATAATACAACGCCGAGACAAA 58.249 39.130 0.00 0.00 0.00 2.83
1692 1865 4.380841 AGATAATACAACGCCGAGACAA 57.619 40.909 0.00 0.00 0.00 3.18
1751 1924 0.739462 TACGCTCCCGAAAGCATGTG 60.739 55.000 9.25 0.00 42.62 3.21
1776 1949 7.309255 GGCGAAGAGAGACAGGTATAATCAATA 60.309 40.741 0.00 0.00 0.00 1.90
1778 1951 5.221263 GGCGAAGAGAGACAGGTATAATCAA 60.221 44.000 0.00 0.00 0.00 2.57
1890 2063 0.105504 AAGCCCTCCAAAAGCAAGGT 60.106 50.000 0.00 0.00 0.00 3.50
1891 2064 1.821136 CTAAGCCCTCCAAAAGCAAGG 59.179 52.381 0.00 0.00 0.00 3.61
1910 2084 1.972588 AAGGCAGAGGGACAATACCT 58.027 50.000 0.00 0.00 42.18 3.08
1920 2094 4.281688 TCATTGGAAAAGAAAAGGCAGAGG 59.718 41.667 0.00 0.00 0.00 3.69
1925 2099 5.636543 CACTCATCATTGGAAAAGAAAAGGC 59.363 40.000 0.00 0.00 0.00 4.35
2064 2239 1.595109 CAGCACGTGCCAAGACTCA 60.595 57.895 35.51 0.00 43.38 3.41
2072 2247 2.980233 AAGCTTCCAGCACGTGCC 60.980 61.111 35.51 19.63 45.56 5.01
2077 2252 1.466851 AAAGGCCAAGCTTCCAGCAC 61.467 55.000 5.01 4.68 45.56 4.40
2083 2258 7.048512 TCTAGTAGAAATAAAGGCCAAGCTTC 58.951 38.462 5.01 0.66 0.00 3.86
2153 2331 7.009357 GCAATTTGCAACAAATGTTCAAACAAT 59.991 29.630 16.35 10.14 44.26 2.71
2179 2357 5.937187 TGATTTACACAACATGGTTCATCG 58.063 37.500 0.00 0.00 0.00 3.84
2186 2364 9.912634 ATTTTAACTCTGATTTACACAACATGG 57.087 29.630 0.00 0.00 0.00 3.66
2218 2398 7.566760 AATTCAAGTGTGTAACTGTTCATGA 57.433 32.000 0.00 0.00 39.81 3.07
2265 2445 7.942341 TGGTGTCCAGAAATATAATGGGATTAC 59.058 37.037 0.00 0.00 34.71 1.89
2276 2456 4.280819 CCAACCATGGTGTCCAGAAATAT 58.719 43.478 20.60 0.00 42.18 1.28
2306 2486 6.073447 TCCTAATCCAATAACCAGAGCAAA 57.927 37.500 0.00 0.00 0.00 3.68
2338 2518 3.357203 TCTCCTGACTTTCTATCACGCT 58.643 45.455 0.00 0.00 0.00 5.07
2351 2531 8.894768 ATATAGTGCAAAGTTATTCTCCTGAC 57.105 34.615 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.