Multiple sequence alignment - TraesCS5D01G271100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G271100 chr5D 100.000 2637 0 0 1 2637 374660846 374663482 0.000000e+00 4870
1 TraesCS5D01G271100 chr5B 85.258 2503 129 101 1 2405 447401733 447404093 0.000000e+00 2357
2 TraesCS5D01G271100 chr5A 83.044 2135 111 89 324 2325 476402191 476404207 0.000000e+00 1705
3 TraesCS5D01G271100 chr5A 87.879 330 19 5 4 328 476401665 476401978 4.150000e-98 368
4 TraesCS5D01G271100 chr5A 87.255 102 8 3 2400 2497 476404300 476404400 7.720000e-21 111
5 TraesCS5D01G271100 chr5A 88.043 92 8 1 2546 2637 476404403 476404491 3.590000e-19 106
6 TraesCS5D01G271100 chr7A 80.989 526 66 27 999 1498 222785741 222785224 1.140000e-103 387
7 TraesCS5D01G271100 chr7D 79.278 526 78 23 999 1498 210125198 210124678 3.250000e-89 339
8 TraesCS5D01G271100 chr7B 79.127 527 74 22 999 1498 191139081 191139598 5.440000e-87 331


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G271100 chr5D 374660846 374663482 2636 False 4870.0 4870 100.00000 1 2637 1 chr5D.!!$F1 2636
1 TraesCS5D01G271100 chr5B 447401733 447404093 2360 False 2357.0 2357 85.25800 1 2405 1 chr5B.!!$F1 2404
2 TraesCS5D01G271100 chr5A 476401665 476404491 2826 False 572.5 1705 86.55525 4 2637 4 chr5A.!!$F1 2633
3 TraesCS5D01G271100 chr7A 222785224 222785741 517 True 387.0 387 80.98900 999 1498 1 chr7A.!!$R1 499
4 TraesCS5D01G271100 chr7D 210124678 210125198 520 True 339.0 339 79.27800 999 1498 1 chr7D.!!$R1 499
5 TraesCS5D01G271100 chr7B 191139081 191139598 517 False 331.0 331 79.12700 999 1498 1 chr7B.!!$F1 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 199 0.179234 TGGTATGGTATGGTGGTGCG 59.821 55.0 0.0 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1980 2406 0.456312 GCGAAGACAGAGTACCACCG 60.456 60.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 34 7.786178 AGCGATATTTTCTATTAGCACACAA 57.214 32.000 0.00 0.00 0.00 3.33
48 58 2.693591 AGATAAACGAATGGGCGAGAGA 59.306 45.455 0.00 0.00 34.83 3.10
62 72 1.608590 CGAGAGATGAAGAGAGGAGCC 59.391 57.143 0.00 0.00 0.00 4.70
137 147 5.239525 CAGCTTCCCTTAATTTTATCCCGAG 59.760 44.000 0.00 0.00 0.00 4.63
174 184 3.101437 CGGGCTATGGTATGGTATGGTA 58.899 50.000 0.00 0.00 0.00 3.25
175 185 3.709653 CGGGCTATGGTATGGTATGGTAT 59.290 47.826 0.00 0.00 0.00 2.73
176 186 4.442893 CGGGCTATGGTATGGTATGGTATG 60.443 50.000 0.00 0.00 0.00 2.39
177 187 4.141482 GGGCTATGGTATGGTATGGTATGG 60.141 50.000 0.00 0.00 0.00 2.74
178 188 4.473559 GGCTATGGTATGGTATGGTATGGT 59.526 45.833 0.00 0.00 0.00 3.55
179 189 5.664006 GGCTATGGTATGGTATGGTATGGTA 59.336 44.000 0.00 0.00 0.00 3.25
181 191 7.217200 GCTATGGTATGGTATGGTATGGTATG 58.783 42.308 0.00 0.00 0.00 2.39
182 192 6.575244 ATGGTATGGTATGGTATGGTATGG 57.425 41.667 0.00 0.00 0.00 2.74
183 193 5.416858 TGGTATGGTATGGTATGGTATGGT 58.583 41.667 0.00 0.00 0.00 3.55
184 194 5.249622 TGGTATGGTATGGTATGGTATGGTG 59.750 44.000 0.00 0.00 0.00 4.17
185 195 4.927267 ATGGTATGGTATGGTATGGTGG 57.073 45.455 0.00 0.00 0.00 4.61
186 196 3.671079 TGGTATGGTATGGTATGGTGGT 58.329 45.455 0.00 0.00 0.00 4.16
187 197 3.392947 TGGTATGGTATGGTATGGTGGTG 59.607 47.826 0.00 0.00 0.00 4.17
188 198 2.656947 ATGGTATGGTATGGTGGTGC 57.343 50.000 0.00 0.00 0.00 5.01
189 199 0.179234 TGGTATGGTATGGTGGTGCG 59.821 55.000 0.00 0.00 0.00 5.34
190 200 0.179468 GGTATGGTATGGTGGTGCGT 59.821 55.000 0.00 0.00 0.00 5.24
191 201 1.413445 GGTATGGTATGGTGGTGCGTA 59.587 52.381 0.00 0.00 0.00 4.42
192 202 2.547218 GGTATGGTATGGTGGTGCGTAG 60.547 54.545 0.00 0.00 0.00 3.51
230 240 0.822121 ACGCCTTCCAAGTTCCAACC 60.822 55.000 0.00 0.00 0.00 3.77
495 738 4.868900 GCAACGCGGCTATGCACG 62.869 66.667 12.47 0.00 39.81 5.34
496 739 4.222589 CAACGCGGCTATGCACGG 62.223 66.667 12.47 0.00 34.75 4.94
502 745 4.830765 GGCTATGCACGGCCACGA 62.831 66.667 22.18 0.00 46.84 4.35
503 746 3.564027 GCTATGCACGGCCACGAC 61.564 66.667 2.24 0.00 44.60 4.34
504 747 3.254654 CTATGCACGGCCACGACG 61.255 66.667 2.24 0.00 44.60 5.12
549 792 1.303643 CAGCCCAGTTGACCCTTCC 60.304 63.158 0.00 0.00 0.00 3.46
550 793 2.359975 GCCCAGTTGACCCTTCCG 60.360 66.667 0.00 0.00 0.00 4.30
596 857 4.753662 CGTGGACGGGGAGGGAGA 62.754 72.222 0.00 0.00 35.37 3.71
627 889 4.397832 TCCTTTACCGGCCCGCAC 62.398 66.667 0.00 0.00 0.00 5.34
741 1003 0.251608 AACCGGAAATCCCAACCCAG 60.252 55.000 9.46 0.00 34.14 4.45
843 1114 1.456892 CCCGATAAAAAGGGCCCCC 60.457 63.158 21.43 0.00 41.34 5.40
892 1163 2.828661 TCCAATTCTCCTCTCCTCGA 57.171 50.000 0.00 0.00 0.00 4.04
897 1168 0.256464 TTCTCCTCTCCTCGACCTCC 59.744 60.000 0.00 0.00 0.00 4.30
899 1170 2.517402 CCTCTCCTCGACCTCCCG 60.517 72.222 0.00 0.00 0.00 5.14
900 1171 2.590645 CTCTCCTCGACCTCCCGA 59.409 66.667 0.00 0.00 37.03 5.14
901 1172 1.149627 CTCTCCTCGACCTCCCGAT 59.850 63.158 0.00 0.00 37.96 4.18
902 1173 0.887387 CTCTCCTCGACCTCCCGATC 60.887 65.000 0.00 0.00 37.96 3.69
903 1174 1.149627 CTCCTCGACCTCCCGATCT 59.850 63.158 0.00 0.00 37.96 2.75
907 1178 0.887387 CTCGACCTCCCGATCTCTCC 60.887 65.000 0.00 0.00 37.96 3.71
909 1180 1.230497 GACCTCCCGATCTCTCCCA 59.770 63.158 0.00 0.00 0.00 4.37
910 1181 0.825840 GACCTCCCGATCTCTCCCAG 60.826 65.000 0.00 0.00 0.00 4.45
911 1182 1.289982 ACCTCCCGATCTCTCCCAGA 61.290 60.000 0.00 0.00 34.78 3.86
912 1183 0.825840 CCTCCCGATCTCTCCCAGAC 60.826 65.000 0.00 0.00 32.26 3.51
915 1186 1.395826 CCCGATCTCTCCCAGACCAC 61.396 65.000 0.00 0.00 32.26 4.16
917 1188 1.395826 CGATCTCTCCCAGACCACCC 61.396 65.000 0.00 0.00 32.26 4.61
918 1189 0.325671 GATCTCTCCCAGACCACCCA 60.326 60.000 0.00 0.00 32.26 4.51
980 1270 2.133641 GCAAACCAACCAGCCACCT 61.134 57.895 0.00 0.00 0.00 4.00
994 1306 1.433053 CCACCTCGTGCGTGTTTGAA 61.433 55.000 5.71 0.00 31.34 2.69
996 1308 1.088306 ACCTCGTGCGTGTTTGAAAA 58.912 45.000 0.00 0.00 0.00 2.29
1167 1488 2.428085 GCCGTCTTCCTCCTCCTCC 61.428 68.421 0.00 0.00 0.00 4.30
1168 1489 1.308326 CCGTCTTCCTCCTCCTCCT 59.692 63.158 0.00 0.00 0.00 3.69
1170 1491 0.753848 CGTCTTCCTCCTCCTCCTCC 60.754 65.000 0.00 0.00 0.00 4.30
1499 1853 3.257393 CCAAGATCGTCAGGTTCTGAAG 58.743 50.000 0.00 2.10 42.46 3.02
1501 1855 2.175202 AGATCGTCAGGTTCTGAAGCT 58.825 47.619 15.86 15.86 42.46 3.74
1509 1863 3.297134 AGGTTCTGAAGCTGAAACCAA 57.703 42.857 20.26 0.00 37.93 3.67
1510 1864 3.217626 AGGTTCTGAAGCTGAAACCAAG 58.782 45.455 20.26 0.00 37.93 3.61
1511 1865 2.294512 GGTTCTGAAGCTGAAACCAAGG 59.705 50.000 12.08 0.00 0.00 3.61
1512 1866 2.276732 TCTGAAGCTGAAACCAAGGG 57.723 50.000 0.00 0.00 0.00 3.95
1513 1867 1.202927 TCTGAAGCTGAAACCAAGGGG 60.203 52.381 0.00 0.00 41.29 4.79
1514 1868 0.850100 TGAAGCTGAAACCAAGGGGA 59.150 50.000 0.00 0.00 38.05 4.81
1517 1871 2.001076 AGCTGAAACCAAGGGGAAAG 57.999 50.000 0.00 0.00 38.05 2.62
1524 1878 5.215845 TGAAACCAAGGGGAAAGAAGAATT 58.784 37.500 0.00 0.00 38.05 2.17
1569 1935 4.124970 CAAAGAATCATCTCATCGAGGCA 58.875 43.478 0.00 0.00 33.77 4.75
1687 2067 3.459828 TGGGAGGTAAAGATGTGGATGA 58.540 45.455 0.00 0.00 0.00 2.92
1773 2156 6.698008 TGAAATGGATTGGATGTGTATGTC 57.302 37.500 0.00 0.00 0.00 3.06
1778 2161 5.308014 TGGATTGGATGTGTATGTCTATGC 58.692 41.667 0.00 0.00 0.00 3.14
1782 2165 5.722021 TGGATGTGTATGTCTATGCGTAT 57.278 39.130 0.00 0.00 0.00 3.06
1788 2171 6.203647 TGTGTATGTCTATGCGTATGTGTAC 58.796 40.000 0.00 0.00 0.00 2.90
1826 2221 8.574251 TTAATCTAGTAGCCAATTCTTTTGCA 57.426 30.769 0.00 0.00 0.00 4.08
1827 2222 7.651027 AATCTAGTAGCCAATTCTTTTGCAT 57.349 32.000 0.00 0.00 0.00 3.96
1873 2296 1.529010 GGCCGGCCATGATTGATCA 60.529 57.895 40.73 0.00 41.70 2.92
1874 2297 1.108727 GGCCGGCCATGATTGATCAA 61.109 55.000 40.73 11.26 40.69 2.57
1875 2298 0.313043 GCCGGCCATGATTGATCAAG 59.687 55.000 18.11 0.71 40.69 3.02
1876 2299 1.971481 CCGGCCATGATTGATCAAGA 58.029 50.000 14.54 3.35 40.69 3.02
1877 2300 1.878088 CCGGCCATGATTGATCAAGAG 59.122 52.381 14.54 3.58 40.69 2.85
1938 2361 3.122850 CCTGATTGCCGGGCATTC 58.877 61.111 28.38 28.38 38.76 2.67
1968 2394 6.493115 CCATGGCATGTTTAAGTGGGATATTA 59.507 38.462 24.80 0.00 0.00 0.98
1973 2399 9.830975 GGCATGTTTAAGTGGGATATTAAAATT 57.169 29.630 0.00 0.00 33.84 1.82
2035 2470 2.665185 GTCCACACGCACCACTCC 60.665 66.667 0.00 0.00 0.00 3.85
2036 2471 3.157949 TCCACACGCACCACTCCA 61.158 61.111 0.00 0.00 0.00 3.86
2037 2472 2.032528 CCACACGCACCACTCCAT 59.967 61.111 0.00 0.00 0.00 3.41
2038 2473 1.600636 CCACACGCACCACTCCATT 60.601 57.895 0.00 0.00 0.00 3.16
2039 2474 1.172180 CCACACGCACCACTCCATTT 61.172 55.000 0.00 0.00 0.00 2.32
2040 2475 1.518325 CACACGCACCACTCCATTTA 58.482 50.000 0.00 0.00 0.00 1.40
2041 2476 1.464608 CACACGCACCACTCCATTTAG 59.535 52.381 0.00 0.00 0.00 1.85
2042 2477 0.447801 CACGCACCACTCCATTTAGC 59.552 55.000 0.00 0.00 0.00 3.09
2043 2478 1.715585 CGCACCACTCCATTTAGCG 59.284 57.895 0.00 0.00 37.68 4.26
2044 2479 0.739462 CGCACCACTCCATTTAGCGA 60.739 55.000 0.00 0.00 45.78 4.93
2045 2480 1.448985 GCACCACTCCATTTAGCGAA 58.551 50.000 0.00 0.00 0.00 4.70
2046 2481 1.130561 GCACCACTCCATTTAGCGAAC 59.869 52.381 0.00 0.00 0.00 3.95
2047 2482 2.422597 CACCACTCCATTTAGCGAACA 58.577 47.619 0.00 0.00 0.00 3.18
2048 2483 2.159627 CACCACTCCATTTAGCGAACAC 59.840 50.000 0.00 0.00 0.00 3.32
2049 2484 2.224426 ACCACTCCATTTAGCGAACACA 60.224 45.455 0.00 0.00 0.00 3.72
2050 2485 2.811431 CCACTCCATTTAGCGAACACAA 59.189 45.455 0.00 0.00 0.00 3.33
2051 2486 3.364964 CCACTCCATTTAGCGAACACAAC 60.365 47.826 0.00 0.00 0.00 3.32
2052 2487 3.249799 CACTCCATTTAGCGAACACAACA 59.750 43.478 0.00 0.00 0.00 3.33
2135 2601 1.883926 GGTGCGATTTTTAGTGGGTGT 59.116 47.619 0.00 0.00 0.00 4.16
2144 2611 5.873179 TTTTTAGTGGGTGTGAATCGATC 57.127 39.130 0.00 0.00 0.00 3.69
2262 2753 3.841255 TCTCTTCTTTTTCCTCCTCCCTC 59.159 47.826 0.00 0.00 0.00 4.30
2264 2755 1.670059 TCTTTTTCCTCCTCCCTCCC 58.330 55.000 0.00 0.00 0.00 4.30
2265 2756 0.626382 CTTTTTCCTCCTCCCTCCCC 59.374 60.000 0.00 0.00 0.00 4.81
2266 2757 0.198696 TTTTTCCTCCTCCCTCCCCT 59.801 55.000 0.00 0.00 0.00 4.79
2267 2758 0.550147 TTTTCCTCCTCCCTCCCCTG 60.550 60.000 0.00 0.00 0.00 4.45
2268 2759 3.642741 TTCCTCCTCCCTCCCCTGC 62.643 68.421 0.00 0.00 0.00 4.85
2285 2776 2.818132 CCCTCCCTGCTCGTGATC 59.182 66.667 0.00 0.00 0.00 2.92
2327 2824 1.140816 GTTGCTGACTCGTTCCTGAC 58.859 55.000 0.00 0.00 0.00 3.51
2328 2825 1.040646 TTGCTGACTCGTTCCTGACT 58.959 50.000 0.00 0.00 0.00 3.41
2329 2826 0.598562 TGCTGACTCGTTCCTGACTC 59.401 55.000 0.00 0.00 0.00 3.36
2330 2827 0.455295 GCTGACTCGTTCCTGACTCG 60.455 60.000 0.00 0.00 0.00 4.18
2331 2828 0.875728 CTGACTCGTTCCTGACTCGT 59.124 55.000 0.00 0.00 0.00 4.18
2332 2829 0.873054 TGACTCGTTCCTGACTCGTC 59.127 55.000 0.00 0.00 0.00 4.20
2333 2830 0.168568 GACTCGTTCCTGACTCGTCC 59.831 60.000 0.00 0.00 0.00 4.79
2334 2831 0.250814 ACTCGTTCCTGACTCGTCCT 60.251 55.000 0.00 0.00 0.00 3.85
2335 2832 0.882474 CTCGTTCCTGACTCGTCCTT 59.118 55.000 0.00 0.00 0.00 3.36
2336 2833 0.596577 TCGTTCCTGACTCGTCCTTG 59.403 55.000 0.00 0.00 0.00 3.61
2337 2834 0.596577 CGTTCCTGACTCGTCCTTGA 59.403 55.000 0.00 0.00 0.00 3.02
2349 2847 4.636206 ACTCGTCCTTGATTAATCTTTGGC 59.364 41.667 16.24 5.35 0.00 4.52
2350 2848 3.945285 TCGTCCTTGATTAATCTTTGGCC 59.055 43.478 16.24 0.00 0.00 5.36
2351 2849 3.947834 CGTCCTTGATTAATCTTTGGCCT 59.052 43.478 16.24 0.00 0.00 5.19
2352 2850 4.201950 CGTCCTTGATTAATCTTTGGCCTG 60.202 45.833 16.24 0.00 0.00 4.85
2357 2855 1.185315 TTAATCTTTGGCCTGCCTGC 58.815 50.000 9.97 0.00 36.94 4.85
2378 2876 1.153429 GCCGATGGTAGGCGAGTTT 60.153 57.895 0.00 0.00 45.58 2.66
2379 2877 1.429148 GCCGATGGTAGGCGAGTTTG 61.429 60.000 0.00 0.00 45.58 2.93
2380 2878 0.108329 CCGATGGTAGGCGAGTTTGT 60.108 55.000 0.00 0.00 0.00 2.83
2383 2881 2.423577 GATGGTAGGCGAGTTTGTGTT 58.576 47.619 0.00 0.00 0.00 3.32
2403 2901 1.579964 CTTGCTCATGCCTGCGTGAA 61.580 55.000 14.42 0.00 40.88 3.18
2404 2902 1.579964 TTGCTCATGCCTGCGTGAAG 61.580 55.000 14.42 9.93 40.88 3.02
2405 2903 2.758089 GCTCATGCCTGCGTGAAGG 61.758 63.158 14.42 5.98 40.88 3.46
2411 2909 4.785453 CCTGCGTGAAGGCTCCCC 62.785 72.222 0.00 0.00 0.00 4.81
2454 2985 2.952714 GCAACTGGAGCCTTCATGT 58.047 52.632 0.00 0.00 0.00 3.21
2464 2999 1.349026 AGCCTTCATGTACACTGCACT 59.651 47.619 0.00 0.00 0.00 4.40
2468 3003 1.511850 TCATGTACACTGCACTGTGC 58.488 50.000 25.15 25.15 45.29 4.57
2485 3020 2.816672 TGTGCTGACAAAGACAAACACA 59.183 40.909 0.00 0.00 34.43 3.72
2490 3025 4.736793 GCTGACAAAGACAAACACATCAAG 59.263 41.667 0.00 0.00 0.00 3.02
2497 3032 8.253113 ACAAAGACAAACACATCAAGAAAATCT 58.747 29.630 0.00 0.00 0.00 2.40
2498 3033 9.090692 CAAAGACAAACACATCAAGAAAATCTT 57.909 29.630 0.00 0.00 37.14 2.40
2501 3036 9.903682 AGACAAACACATCAAGAAAATCTTATG 57.096 29.630 0.00 1.57 33.78 1.90
2502 3037 9.683069 GACAAACACATCAAGAAAATCTTATGT 57.317 29.630 0.00 2.09 33.78 2.29
2503 3038 9.467258 ACAAACACATCAAGAAAATCTTATGTG 57.533 29.630 23.15 23.15 43.78 3.21
2504 3039 8.918658 CAAACACATCAAGAAAATCTTATGTGG 58.081 33.333 25.41 16.89 43.28 4.17
2505 3040 7.161773 ACACATCAAGAAAATCTTATGTGGG 57.838 36.000 25.41 15.83 43.28 4.61
2506 3041 6.947733 ACACATCAAGAAAATCTTATGTGGGA 59.052 34.615 25.41 10.38 43.28 4.37
2507 3042 7.616935 ACACATCAAGAAAATCTTATGTGGGAT 59.383 33.333 25.41 14.64 43.28 3.85
2508 3043 8.133627 CACATCAAGAAAATCTTATGTGGGATC 58.866 37.037 20.44 0.00 40.23 3.36
2509 3044 8.057623 ACATCAAGAAAATCTTATGTGGGATCT 58.942 33.333 11.15 0.00 33.78 2.75
2510 3045 7.870509 TCAAGAAAATCTTATGTGGGATCTG 57.129 36.000 0.00 0.00 33.78 2.90
2511 3046 6.319658 TCAAGAAAATCTTATGTGGGATCTGC 59.680 38.462 0.00 0.00 33.78 4.26
2512 3047 4.818546 AGAAAATCTTATGTGGGATCTGCG 59.181 41.667 0.00 0.00 0.00 5.18
2513 3048 2.847327 ATCTTATGTGGGATCTGCGG 57.153 50.000 0.00 0.00 0.00 5.69
2514 3049 0.758734 TCTTATGTGGGATCTGCGGG 59.241 55.000 0.00 0.00 0.00 6.13
2515 3050 0.886490 CTTATGTGGGATCTGCGGGC 60.886 60.000 0.00 0.00 0.00 6.13
2516 3051 2.337879 TTATGTGGGATCTGCGGGCC 62.338 60.000 0.00 0.00 0.00 5.80
2521 3056 3.626924 GGATCTGCGGGCCCGTAT 61.627 66.667 42.53 32.07 42.09 3.06
2522 3057 2.048127 GATCTGCGGGCCCGTATC 60.048 66.667 42.53 34.32 42.09 2.24
2523 3058 2.524394 ATCTGCGGGCCCGTATCT 60.524 61.111 42.53 26.11 42.09 1.98
2524 3059 1.228769 ATCTGCGGGCCCGTATCTA 60.229 57.895 42.53 27.01 42.09 1.98
2525 3060 0.614979 ATCTGCGGGCCCGTATCTAT 60.615 55.000 42.53 27.91 42.09 1.98
2526 3061 1.079819 CTGCGGGCCCGTATCTATG 60.080 63.158 42.53 23.95 42.09 2.23
2527 3062 1.816863 CTGCGGGCCCGTATCTATGT 61.817 60.000 42.53 0.00 42.09 2.29
2528 3063 1.374252 GCGGGCCCGTATCTATGTG 60.374 63.158 42.53 13.94 42.09 3.21
2529 3064 1.374252 CGGGCCCGTATCTATGTGC 60.374 63.158 36.64 0.00 34.35 4.57
2530 3065 1.752198 GGGCCCGTATCTATGTGCA 59.248 57.895 5.69 0.00 0.00 4.57
2531 3066 0.602905 GGGCCCGTATCTATGTGCAC 60.603 60.000 5.69 10.75 0.00 4.57
2532 3067 0.602905 GGCCCGTATCTATGTGCACC 60.603 60.000 15.69 0.00 0.00 5.01
2533 3068 0.944311 GCCCGTATCTATGTGCACCG 60.944 60.000 15.69 8.42 0.00 4.94
2534 3069 0.671796 CCCGTATCTATGTGCACCGA 59.328 55.000 15.69 8.70 0.00 4.69
2535 3070 1.335964 CCCGTATCTATGTGCACCGAG 60.336 57.143 15.69 11.52 0.00 4.63
2536 3071 1.607148 CCGTATCTATGTGCACCGAGA 59.393 52.381 15.69 16.67 0.00 4.04
2537 3072 2.034179 CCGTATCTATGTGCACCGAGAA 59.966 50.000 15.69 5.36 0.00 2.87
2538 3073 3.490249 CCGTATCTATGTGCACCGAGAAA 60.490 47.826 15.69 0.00 0.00 2.52
2539 3074 4.299155 CGTATCTATGTGCACCGAGAAAT 58.701 43.478 15.69 2.05 0.00 2.17
2540 3075 4.745125 CGTATCTATGTGCACCGAGAAATT 59.255 41.667 15.69 4.84 0.00 1.82
2541 3076 5.332581 CGTATCTATGTGCACCGAGAAATTG 60.333 44.000 15.69 1.04 0.00 2.32
2542 3077 3.937814 TCTATGTGCACCGAGAAATTGT 58.062 40.909 15.69 0.00 0.00 2.71
2543 3078 3.932710 TCTATGTGCACCGAGAAATTGTC 59.067 43.478 15.69 0.00 0.00 3.18
2544 3079 2.254546 TGTGCACCGAGAAATTGTCT 57.745 45.000 15.69 0.00 40.25 3.41
2551 3086 2.557056 ACCGAGAAATTGTCTGACGAGA 59.443 45.455 3.80 0.00 36.41 4.04
2558 3093 6.925211 AGAAATTGTCTGACGAGATGAGTAA 58.075 36.000 3.80 0.00 34.29 2.24
2559 3094 7.551585 AGAAATTGTCTGACGAGATGAGTAAT 58.448 34.615 3.80 0.00 34.29 1.89
2560 3095 8.037758 AGAAATTGTCTGACGAGATGAGTAATT 58.962 33.333 3.80 0.00 34.29 1.40
2590 3125 1.379309 GCAAATCGGGCCCCTGTTA 60.379 57.895 18.66 0.00 0.00 2.41
2594 3129 2.300437 CAAATCGGGCCCCTGTTAAAAA 59.700 45.455 18.66 0.00 0.00 1.94
2627 3162 4.524714 TCTTCGTCTCTGAAACTCTTGGAT 59.475 41.667 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 30 4.662145 GCCCATTCGTTTATCTTCTTGTG 58.338 43.478 0.00 0.00 0.00 3.33
21 31 3.374058 CGCCCATTCGTTTATCTTCTTGT 59.626 43.478 0.00 0.00 0.00 3.16
22 32 3.621268 TCGCCCATTCGTTTATCTTCTTG 59.379 43.478 0.00 0.00 0.00 3.02
23 33 3.869065 TCGCCCATTCGTTTATCTTCTT 58.131 40.909 0.00 0.00 0.00 2.52
24 34 3.132289 TCTCGCCCATTCGTTTATCTTCT 59.868 43.478 0.00 0.00 0.00 2.85
48 58 2.790791 CGGCGGCTCCTCTCTTCAT 61.791 63.158 7.61 0.00 0.00 2.57
109 119 6.015095 GGGATAAAATTAAGGGAAGCTGGATG 60.015 42.308 0.00 0.00 0.00 3.51
174 184 1.491668 TCTACGCACCACCATACCAT 58.508 50.000 0.00 0.00 0.00 3.55
175 185 1.138069 CATCTACGCACCACCATACCA 59.862 52.381 0.00 0.00 0.00 3.25
176 186 1.540363 CCATCTACGCACCACCATACC 60.540 57.143 0.00 0.00 0.00 2.73
177 187 1.411246 TCCATCTACGCACCACCATAC 59.589 52.381 0.00 0.00 0.00 2.39
178 188 1.783071 TCCATCTACGCACCACCATA 58.217 50.000 0.00 0.00 0.00 2.74
179 189 0.908910 TTCCATCTACGCACCACCAT 59.091 50.000 0.00 0.00 0.00 3.55
181 191 0.535335 TCTTCCATCTACGCACCACC 59.465 55.000 0.00 0.00 0.00 4.61
182 192 2.271800 CTTCTTCCATCTACGCACCAC 58.728 52.381 0.00 0.00 0.00 4.16
183 193 1.405526 GCTTCTTCCATCTACGCACCA 60.406 52.381 0.00 0.00 0.00 4.17
184 194 1.291132 GCTTCTTCCATCTACGCACC 58.709 55.000 0.00 0.00 0.00 5.01
185 195 1.291132 GGCTTCTTCCATCTACGCAC 58.709 55.000 0.00 0.00 0.00 5.34
186 196 0.179111 CGGCTTCTTCCATCTACGCA 60.179 55.000 0.00 0.00 0.00 5.24
187 197 1.491505 GCGGCTTCTTCCATCTACGC 61.492 60.000 0.00 0.00 38.94 4.42
188 198 1.209275 CGCGGCTTCTTCCATCTACG 61.209 60.000 0.00 0.00 0.00 3.51
189 199 0.102481 TCGCGGCTTCTTCCATCTAC 59.898 55.000 6.13 0.00 0.00 2.59
190 200 0.102481 GTCGCGGCTTCTTCCATCTA 59.898 55.000 1.90 0.00 0.00 1.98
191 201 1.153549 GTCGCGGCTTCTTCCATCT 60.154 57.895 1.90 0.00 0.00 2.90
192 202 2.517450 CGTCGCGGCTTCTTCCATC 61.517 63.158 9.90 0.00 0.00 3.51
440 681 0.031010 AGGGGTAGGATGGTCAGGTC 60.031 60.000 0.00 0.00 0.00 3.85
487 730 3.254654 CGTCGTGGCCGTGCATAG 61.255 66.667 0.00 0.00 35.01 2.23
500 743 3.107661 GTTGGGGTACGTGCGTCG 61.108 66.667 0.00 0.00 46.00 5.12
501 744 3.107661 CGTTGGGGTACGTGCGTC 61.108 66.667 0.00 0.00 36.80 5.19
507 750 1.980772 AGAGGGACGTTGGGGTACG 60.981 63.158 0.00 0.00 46.52 3.67
508 751 1.595357 CAGAGGGACGTTGGGGTAC 59.405 63.158 0.00 0.00 0.00 3.34
509 752 1.611261 CCAGAGGGACGTTGGGGTA 60.611 63.158 0.00 0.00 35.59 3.69
510 753 2.928396 CCAGAGGGACGTTGGGGT 60.928 66.667 0.00 0.00 35.59 4.95
511 754 2.606519 TCCAGAGGGACGTTGGGG 60.607 66.667 3.47 0.00 38.64 4.96
580 841 2.760385 CTCTCCCTCCCCGTCCAC 60.760 72.222 0.00 0.00 0.00 4.02
656 918 4.261888 CCGTTTCGGTCAGGTCAG 57.738 61.111 0.00 0.00 42.73 3.51
843 1114 1.133976 GTGTGGAATGGAGGGGAGATG 60.134 57.143 0.00 0.00 0.00 2.90
892 1163 1.231641 CTGGGAGAGATCGGGAGGT 59.768 63.158 0.00 0.00 0.00 3.85
897 1168 1.395826 GGTGGTCTGGGAGAGATCGG 61.396 65.000 0.00 0.00 34.02 4.18
899 1170 0.325671 TGGGTGGTCTGGGAGAGATC 60.326 60.000 0.00 0.00 31.63 2.75
900 1171 0.618968 GTGGGTGGTCTGGGAGAGAT 60.619 60.000 0.00 0.00 31.63 2.75
901 1172 1.229209 GTGGGTGGTCTGGGAGAGA 60.229 63.158 0.00 0.00 0.00 3.10
902 1173 2.294078 GGTGGGTGGTCTGGGAGAG 61.294 68.421 0.00 0.00 0.00 3.20
903 1174 2.203938 GGTGGGTGGTCTGGGAGA 60.204 66.667 0.00 0.00 0.00 3.71
907 1178 3.330720 GGGAGGTGGGTGGTCTGG 61.331 72.222 0.00 0.00 0.00 3.86
980 1270 3.406728 TGATTTTTCAAACACGCACGA 57.593 38.095 0.00 0.00 0.00 4.35
994 1306 2.491152 CCGCTGCGCCATGATTTT 59.509 55.556 18.00 0.00 0.00 1.82
996 1308 3.779850 ATCCCGCTGCGCCATGATT 62.780 57.895 18.00 0.00 0.00 2.57
1167 1488 1.391157 CCGGCAGAGAAGAGGAGGAG 61.391 65.000 0.00 0.00 0.00 3.69
1168 1489 1.380515 CCGGCAGAGAAGAGGAGGA 60.381 63.158 0.00 0.00 0.00 3.71
1170 1491 3.087666 GCCCGGCAGAGAAGAGGAG 62.088 68.421 3.91 0.00 0.00 3.69
1499 1853 1.995376 TCTTTCCCCTTGGTTTCAGC 58.005 50.000 0.00 0.00 0.00 4.26
1501 1855 3.963476 TCTTCTTTCCCCTTGGTTTCA 57.037 42.857 0.00 0.00 0.00 2.69
1502 1856 5.304357 TGAATTCTTCTTTCCCCTTGGTTTC 59.696 40.000 7.05 0.00 0.00 2.78
1503 1857 5.215845 TGAATTCTTCTTTCCCCTTGGTTT 58.784 37.500 7.05 0.00 0.00 3.27
1504 1858 4.814967 TGAATTCTTCTTTCCCCTTGGTT 58.185 39.130 7.05 0.00 0.00 3.67
1506 1860 4.666512 TCTGAATTCTTCTTTCCCCTTGG 58.333 43.478 7.05 0.00 0.00 3.61
1507 1861 6.847421 ATTCTGAATTCTTCTTTCCCCTTG 57.153 37.500 7.05 0.00 0.00 3.61
1508 1862 6.438741 GGAATTCTGAATTCTTCTTTCCCCTT 59.561 38.462 31.14 3.50 45.17 3.95
1509 1863 5.954752 GGAATTCTGAATTCTTCTTTCCCCT 59.045 40.000 31.14 3.16 45.17 4.79
1510 1864 5.716703 TGGAATTCTGAATTCTTCTTTCCCC 59.283 40.000 31.14 18.50 45.17 4.81
1511 1865 6.626844 GCTGGAATTCTGAATTCTTCTTTCCC 60.627 42.308 31.14 19.05 45.17 3.97
1512 1866 6.328714 GCTGGAATTCTGAATTCTTCTTTCC 58.671 40.000 31.14 20.47 45.17 3.13
1513 1867 6.328714 GGCTGGAATTCTGAATTCTTCTTTC 58.671 40.000 31.14 19.30 45.17 2.62
1514 1868 5.105997 CGGCTGGAATTCTGAATTCTTCTTT 60.106 40.000 31.14 6.49 45.17 2.52
1517 1871 3.941483 TCGGCTGGAATTCTGAATTCTTC 59.059 43.478 31.14 22.38 45.17 2.87
1524 1878 1.221840 GCCTCGGCTGGAATTCTGA 59.778 57.895 5.23 0.00 38.26 3.27
1583 1949 2.254459 CAGCATAATACTAGCGGCTCG 58.746 52.381 5.39 1.91 0.00 5.03
1584 1950 3.305398 ACAGCATAATACTAGCGGCTC 57.695 47.619 5.39 0.00 0.00 4.70
1585 1951 3.181465 ACAACAGCATAATACTAGCGGCT 60.181 43.478 7.98 7.98 0.00 5.52
1586 1952 3.131396 ACAACAGCATAATACTAGCGGC 58.869 45.455 0.00 0.00 0.00 6.53
1587 1953 5.050490 AGAACAACAGCATAATACTAGCGG 58.950 41.667 0.00 0.00 0.00 5.52
1661 2036 5.650283 TCCACATCTTTACCTCCCATTTTT 58.350 37.500 0.00 0.00 0.00 1.94
1687 2067 4.819630 TCACACACGCTATTCTTTCCTTTT 59.180 37.500 0.00 0.00 0.00 2.27
1859 2282 4.825634 TGATTCTCTTGATCAATCATGGCC 59.174 41.667 8.96 0.00 36.56 5.36
1860 2283 6.206829 TGATGATTCTCTTGATCAATCATGGC 59.793 38.462 20.75 11.29 43.95 4.40
1861 2284 7.745620 TGATGATTCTCTTGATCAATCATGG 57.254 36.000 20.75 5.89 43.95 3.66
1873 2296 8.818622 TTCCTTCAATGATTGATGATTCTCTT 57.181 30.769 19.08 0.00 39.84 2.85
1874 2297 8.998277 ATTCCTTCAATGATTGATGATTCTCT 57.002 30.769 19.08 0.00 39.84 3.10
1875 2298 8.847196 TGATTCCTTCAATGATTGATGATTCTC 58.153 33.333 19.08 11.64 39.84 2.87
1876 2299 8.762481 TGATTCCTTCAATGATTGATGATTCT 57.238 30.769 19.08 4.57 39.84 2.40
1877 2300 9.811995 TTTGATTCCTTCAATGATTGATGATTC 57.188 29.630 19.08 17.06 43.73 2.52
1938 2361 1.405105 CTTAAACATGCCATGGACCCG 59.595 52.381 18.40 2.33 33.60 5.28
1968 2394 3.568443 AGTACCACCGGTTCCAAATTTT 58.432 40.909 2.97 0.00 37.09 1.82
1973 2399 0.682852 CAGAGTACCACCGGTTCCAA 59.317 55.000 2.97 0.00 37.09 3.53
1974 2400 0.470456 ACAGAGTACCACCGGTTCCA 60.470 55.000 2.97 0.00 37.09 3.53
1980 2406 0.456312 GCGAAGACAGAGTACCACCG 60.456 60.000 0.00 0.00 0.00 4.94
2035 2470 6.509317 AAAATGTGTTGTGTTCGCTAAATG 57.491 33.333 0.00 0.00 0.00 2.32
2036 2471 8.698854 CATAAAAATGTGTTGTGTTCGCTAAAT 58.301 29.630 0.00 0.00 0.00 1.40
2037 2472 7.168302 CCATAAAAATGTGTTGTGTTCGCTAAA 59.832 33.333 0.00 0.00 0.00 1.85
2038 2473 6.638873 CCATAAAAATGTGTTGTGTTCGCTAA 59.361 34.615 0.00 0.00 0.00 3.09
2039 2474 6.146216 CCATAAAAATGTGTTGTGTTCGCTA 58.854 36.000 0.00 0.00 0.00 4.26
2040 2475 4.981674 CCATAAAAATGTGTTGTGTTCGCT 59.018 37.500 0.00 0.00 0.00 4.93
2041 2476 4.375908 GCCATAAAAATGTGTTGTGTTCGC 60.376 41.667 0.00 0.00 0.00 4.70
2042 2477 4.981674 AGCCATAAAAATGTGTTGTGTTCG 59.018 37.500 0.00 0.00 0.00 3.95
2043 2478 6.478344 TCAAGCCATAAAAATGTGTTGTGTTC 59.522 34.615 0.00 0.00 0.00 3.18
2044 2479 6.344500 TCAAGCCATAAAAATGTGTTGTGTT 58.656 32.000 0.00 0.00 0.00 3.32
2045 2480 5.911752 TCAAGCCATAAAAATGTGTTGTGT 58.088 33.333 0.00 0.00 0.00 3.72
2046 2481 7.360269 GGAATCAAGCCATAAAAATGTGTTGTG 60.360 37.037 0.00 0.00 0.00 3.33
2047 2482 6.650390 GGAATCAAGCCATAAAAATGTGTTGT 59.350 34.615 0.00 0.00 0.00 3.32
2048 2483 6.875195 AGGAATCAAGCCATAAAAATGTGTTG 59.125 34.615 0.00 0.00 0.00 3.33
2049 2484 6.875195 CAGGAATCAAGCCATAAAAATGTGTT 59.125 34.615 0.00 0.00 0.00 3.32
2050 2485 6.400568 CAGGAATCAAGCCATAAAAATGTGT 58.599 36.000 0.00 0.00 0.00 3.72
2051 2486 5.813672 CCAGGAATCAAGCCATAAAAATGTG 59.186 40.000 0.00 0.00 0.00 3.21
2052 2487 5.721000 TCCAGGAATCAAGCCATAAAAATGT 59.279 36.000 0.00 0.00 0.00 2.71
2144 2611 3.487202 CCAACCACACCGCGATCG 61.487 66.667 11.69 11.69 0.00 3.69
2265 2756 4.463879 CACGAGCAGGGAGGGCAG 62.464 72.222 0.00 0.00 0.00 4.85
2267 2758 3.453070 GATCACGAGCAGGGAGGGC 62.453 68.421 0.00 0.00 34.57 5.19
2268 2759 2.818132 GATCACGAGCAGGGAGGG 59.182 66.667 0.00 0.00 34.57 4.30
2269 2760 2.121538 TCGATCACGAGCAGGGAGG 61.122 63.158 0.00 0.00 43.81 4.30
2270 2761 3.514417 TCGATCACGAGCAGGGAG 58.486 61.111 0.00 0.00 43.81 4.30
2285 2776 3.659089 AAAGACGACCGGCCCATCG 62.659 63.158 19.10 19.10 43.97 3.84
2308 2805 1.140816 GTCAGGAACGAGTCAGCAAC 58.859 55.000 0.00 0.00 0.00 4.17
2327 2824 4.035675 GGCCAAAGATTAATCAAGGACGAG 59.964 45.833 17.56 0.00 0.00 4.18
2328 2825 3.945285 GGCCAAAGATTAATCAAGGACGA 59.055 43.478 17.56 0.00 0.00 4.20
2329 2826 3.947834 AGGCCAAAGATTAATCAAGGACG 59.052 43.478 17.56 1.37 30.57 4.79
2330 2827 4.440663 GCAGGCCAAAGATTAATCAAGGAC 60.441 45.833 17.56 16.25 0.00 3.85
2331 2828 3.701040 GCAGGCCAAAGATTAATCAAGGA 59.299 43.478 17.56 0.00 0.00 3.36
2332 2829 3.181472 GGCAGGCCAAAGATTAATCAAGG 60.181 47.826 17.56 15.22 35.81 3.61
2333 2830 3.703052 AGGCAGGCCAAAGATTAATCAAG 59.297 43.478 17.56 6.54 38.92 3.02
2334 2831 3.448301 CAGGCAGGCCAAAGATTAATCAA 59.552 43.478 17.56 0.00 38.92 2.57
2335 2832 3.025978 CAGGCAGGCCAAAGATTAATCA 58.974 45.455 17.56 0.00 38.92 2.57
2336 2833 2.223900 GCAGGCAGGCCAAAGATTAATC 60.224 50.000 13.63 7.41 38.92 1.75
2337 2834 1.758862 GCAGGCAGGCCAAAGATTAAT 59.241 47.619 13.63 0.00 38.92 1.40
2352 2850 4.175337 TACCATCGGCAGGCAGGC 62.175 66.667 0.00 0.00 39.93 4.85
2362 2860 0.999406 CACAAACTCGCCTACCATCG 59.001 55.000 0.00 0.00 0.00 3.84
2378 2876 1.241165 CAGGCATGAGCAAGAACACA 58.759 50.000 0.00 0.00 44.61 3.72
2379 2877 0.109412 GCAGGCATGAGCAAGAACAC 60.109 55.000 0.62 0.00 44.61 3.32
2380 2878 1.579964 CGCAGGCATGAGCAAGAACA 61.580 55.000 0.62 0.00 44.61 3.18
2383 2881 2.036571 CACGCAGGCATGAGCAAGA 61.037 57.895 0.62 0.00 44.61 3.02
2405 2903 4.008933 AGTGACACGCAGGGGAGC 62.009 66.667 0.00 0.00 0.00 4.70
2408 2906 1.374252 GTACAGTGACACGCAGGGG 60.374 63.158 0.00 0.00 0.00 4.79
2409 2907 0.667487 CAGTACAGTGACACGCAGGG 60.667 60.000 0.00 0.00 0.00 4.45
2410 2908 0.667487 CCAGTACAGTGACACGCAGG 60.667 60.000 0.00 0.00 0.00 4.85
2411 2909 1.284982 GCCAGTACAGTGACACGCAG 61.285 60.000 0.00 0.00 0.00 5.18
2449 2980 1.511850 GCACAGTGCAGTGTACATGA 58.488 50.000 26.21 0.00 44.26 3.07
2464 2999 2.816672 TGTGTTTGTCTTTGTCAGCACA 59.183 40.909 0.00 0.00 33.70 4.57
2468 3003 6.122850 TCTTGATGTGTTTGTCTTTGTCAG 57.877 37.500 0.00 0.00 0.00 3.51
2485 3020 7.014038 GCAGATCCCACATAAGATTTTCTTGAT 59.986 37.037 0.07 0.00 37.29 2.57
2490 3025 4.023707 CCGCAGATCCCACATAAGATTTTC 60.024 45.833 0.00 0.00 0.00 2.29
2497 3032 1.148273 GCCCGCAGATCCCACATAA 59.852 57.895 0.00 0.00 0.00 1.90
2498 3033 2.818169 GGCCCGCAGATCCCACATA 61.818 63.158 0.00 0.00 0.00 2.29
2499 3034 4.195334 GGCCCGCAGATCCCACAT 62.195 66.667 0.00 0.00 0.00 3.21
2504 3039 3.591254 GATACGGGCCCGCAGATCC 62.591 68.421 43.58 22.22 44.19 3.36
2505 3040 1.248785 TAGATACGGGCCCGCAGATC 61.249 60.000 43.58 36.73 44.19 2.75
2506 3041 0.614979 ATAGATACGGGCCCGCAGAT 60.615 55.000 43.58 32.28 44.19 2.90
2507 3042 1.228769 ATAGATACGGGCCCGCAGA 60.229 57.895 43.58 29.07 44.19 4.26
2508 3043 1.079819 CATAGATACGGGCCCGCAG 60.080 63.158 43.58 19.63 44.19 5.18
2509 3044 1.835267 ACATAGATACGGGCCCGCA 60.835 57.895 43.58 33.75 44.19 5.69
2510 3045 1.374252 CACATAGATACGGGCCCGC 60.374 63.158 43.58 27.54 44.19 6.13
2511 3046 1.374252 GCACATAGATACGGGCCCG 60.374 63.158 42.17 42.17 46.03 6.13
2512 3047 0.602905 GTGCACATAGATACGGGCCC 60.603 60.000 13.57 13.57 0.00 5.80
2513 3048 0.602905 GGTGCACATAGATACGGGCC 60.603 60.000 20.43 0.00 0.00 5.80
2514 3049 0.944311 CGGTGCACATAGATACGGGC 60.944 60.000 20.43 0.00 0.00 6.13
2515 3050 0.671796 TCGGTGCACATAGATACGGG 59.328 55.000 20.43 0.00 0.00 5.28
2516 3051 1.607148 TCTCGGTGCACATAGATACGG 59.393 52.381 20.43 5.53 0.00 4.02
2517 3052 3.349488 TTCTCGGTGCACATAGATACG 57.651 47.619 20.43 11.08 0.00 3.06
2518 3053 5.523916 ACAATTTCTCGGTGCACATAGATAC 59.476 40.000 20.43 0.00 0.00 2.24
2519 3054 5.670485 ACAATTTCTCGGTGCACATAGATA 58.330 37.500 20.43 14.91 0.00 1.98
2520 3055 4.517285 ACAATTTCTCGGTGCACATAGAT 58.483 39.130 20.43 3.73 0.00 1.98
2521 3056 3.932710 GACAATTTCTCGGTGCACATAGA 59.067 43.478 20.43 16.98 0.00 1.98
2522 3057 3.935203 AGACAATTTCTCGGTGCACATAG 59.065 43.478 20.43 14.84 0.00 2.23
2523 3058 3.684305 CAGACAATTTCTCGGTGCACATA 59.316 43.478 20.43 4.56 28.96 2.29
2524 3059 2.485426 CAGACAATTTCTCGGTGCACAT 59.515 45.455 20.43 0.00 28.96 3.21
2525 3060 1.872952 CAGACAATTTCTCGGTGCACA 59.127 47.619 20.43 0.00 28.96 4.57
2526 3061 2.096218 GTCAGACAATTTCTCGGTGCAC 60.096 50.000 8.80 8.80 28.96 4.57
2527 3062 2.143122 GTCAGACAATTTCTCGGTGCA 58.857 47.619 0.00 0.00 28.96 4.57
2528 3063 1.126846 CGTCAGACAATTTCTCGGTGC 59.873 52.381 0.41 0.00 28.96 5.01
2529 3064 2.663602 CTCGTCAGACAATTTCTCGGTG 59.336 50.000 0.41 0.00 28.96 4.94
2530 3065 2.557056 TCTCGTCAGACAATTTCTCGGT 59.443 45.455 0.41 0.00 28.96 4.69
2531 3066 3.217599 TCTCGTCAGACAATTTCTCGG 57.782 47.619 0.41 0.00 28.96 4.63
2532 3067 4.415735 TCATCTCGTCAGACAATTTCTCG 58.584 43.478 0.41 0.00 28.96 4.04
2533 3068 5.406649 ACTCATCTCGTCAGACAATTTCTC 58.593 41.667 0.41 0.00 28.96 2.87
2534 3069 5.398603 ACTCATCTCGTCAGACAATTTCT 57.601 39.130 0.41 0.00 33.33 2.52
2535 3070 7.763172 ATTACTCATCTCGTCAGACAATTTC 57.237 36.000 0.41 0.00 0.00 2.17
2536 3071 9.823647 ATAATTACTCATCTCGTCAGACAATTT 57.176 29.630 0.41 0.00 0.00 1.82
2538 3073 9.900710 GTATAATTACTCATCTCGTCAGACAAT 57.099 33.333 0.41 0.00 0.00 2.71
2539 3074 8.899771 TGTATAATTACTCATCTCGTCAGACAA 58.100 33.333 0.41 0.00 0.00 3.18
2540 3075 8.446599 TGTATAATTACTCATCTCGTCAGACA 57.553 34.615 0.41 0.00 0.00 3.41
2541 3076 9.335891 CATGTATAATTACTCATCTCGTCAGAC 57.664 37.037 0.00 0.00 0.00 3.51
2542 3077 8.515414 CCATGTATAATTACTCATCTCGTCAGA 58.485 37.037 0.00 0.00 0.00 3.27
2543 3078 8.300286 ACCATGTATAATTACTCATCTCGTCAG 58.700 37.037 0.00 0.00 0.00 3.51
2544 3079 8.082242 CACCATGTATAATTACTCATCTCGTCA 58.918 37.037 0.00 0.00 0.00 4.35
2551 3086 5.304778 TGCGCACCATGTATAATTACTCAT 58.695 37.500 5.66 0.00 0.00 2.90
2558 3093 3.058293 CCGATTTGCGCACCATGTATAAT 60.058 43.478 11.12 4.10 39.11 1.28
2559 3094 2.289274 CCGATTTGCGCACCATGTATAA 59.711 45.455 11.12 0.00 39.11 0.98
2560 3095 1.870402 CCGATTTGCGCACCATGTATA 59.130 47.619 11.12 0.00 39.11 1.47
2594 3129 3.259374 TCAGAGACGAAGAGCCTGATTTT 59.741 43.478 0.00 0.00 0.00 1.82
2597 3132 2.136298 TCAGAGACGAAGAGCCTGAT 57.864 50.000 0.00 0.00 0.00 2.90
2599 3134 2.029470 AGTTTCAGAGACGAAGAGCCTG 60.029 50.000 0.00 0.00 0.00 4.85
2600 3135 2.230266 GAGTTTCAGAGACGAAGAGCCT 59.770 50.000 0.00 0.00 0.00 4.58
2608 3143 4.179926 TCATCCAAGAGTTTCAGAGACG 57.820 45.455 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.