Multiple sequence alignment - TraesCS5D01G270600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G270600 chr5D 100.000 4700 0 0 1 4700 374294334 374299033 0.000000e+00 8680.0
1 TraesCS5D01G270600 chr5D 96.820 849 12 4 3865 4700 468339452 468338606 0.000000e+00 1404.0
2 TraesCS5D01G270600 chr5D 96.580 848 15 3 3866 4700 468324561 468325407 0.000000e+00 1393.0
3 TraesCS5D01G270600 chr5B 87.567 2252 103 54 2 2189 446011285 446009147 0.000000e+00 2444.0
4 TraesCS5D01G270600 chr5B 94.938 1284 55 4 841 2124 446411212 446412485 0.000000e+00 2002.0
5 TraesCS5D01G270600 chr5B 93.287 1147 49 8 1003 2147 447207183 447206063 0.000000e+00 1666.0
6 TraesCS5D01G270600 chr5B 91.026 1248 50 31 2201 3417 447205688 447204472 0.000000e+00 1628.0
7 TraesCS5D01G270600 chr5B 86.717 1182 103 32 2274 3417 446009077 446007912 0.000000e+00 1264.0
8 TraesCS5D01G270600 chr5B 90.516 949 51 17 2245 3167 446413053 446413988 0.000000e+00 1218.0
9 TraesCS5D01G270600 chr5B 93.475 659 28 4 3866 4511 530749056 530749712 0.000000e+00 965.0
10 TraesCS5D01G270600 chr5B 87.732 538 31 15 282 799 446365327 446365849 3.130000e-166 595.0
11 TraesCS5D01G270600 chr5B 85.106 329 19 9 477 800 447207746 447207443 4.570000e-80 309.0
12 TraesCS5D01G270600 chr5B 86.513 304 12 9 169 463 447208986 447208703 1.640000e-79 307.0
13 TraesCS5D01G270600 chr5B 88.797 241 13 5 3628 3865 446414537 446414766 2.770000e-72 283.0
14 TraesCS5D01G270600 chr5B 89.529 191 8 4 3657 3847 447204255 447204077 1.020000e-56 231.0
15 TraesCS5D01G270600 chr5B 93.571 140 9 0 1 140 447209301 447209162 4.770000e-50 209.0
16 TraesCS5D01G270600 chr5B 85.455 165 13 4 3678 3842 446829884 446830037 1.350000e-35 161.0
17 TraesCS5D01G270600 chr5B 94.949 99 5 0 1 99 446365020 446365118 6.300000e-34 156.0
18 TraesCS5D01G270600 chr5B 100.000 37 0 0 845 881 447207440 447207404 8.440000e-08 69.4
19 TraesCS5D01G270600 chr5B 100.000 33 0 0 2158 2190 446412959 446412991 1.410000e-05 62.1
20 TraesCS5D01G270600 chr5B 96.875 32 1 0 2190 2221 446009116 446009085 2.000000e-03 54.7
21 TraesCS5D01G270600 chr5A 92.895 1506 62 24 673 2155 476072442 476073925 0.000000e+00 2146.0
22 TraesCS5D01G270600 chr5A 88.478 920 63 21 2271 3177 476074000 476074889 0.000000e+00 1072.0
23 TraesCS5D01G270600 chr5A 90.144 416 29 7 214 622 476072023 476072433 8.950000e-147 531.0
24 TraesCS5D01G270600 chr5A 86.158 419 27 14 90 503 476079976 476080368 1.560000e-114 424.0
25 TraesCS5D01G270600 chr5A 91.195 159 11 2 3259 3417 476075046 476075201 3.680000e-51 213.0
26 TraesCS5D01G270600 chr5A 92.373 118 7 1 2 117 476071863 476071980 2.910000e-37 167.0
27 TraesCS5D01G270600 chr1D 96.816 848 11 4 3866 4700 410691372 410690528 0.000000e+00 1402.0
28 TraesCS5D01G270600 chr7B 94.276 856 19 7 3866 4700 6367769 6366923 0.000000e+00 1282.0
29 TraesCS5D01G270600 chr3B 94.249 852 27 6 3866 4700 95450795 95451641 0.000000e+00 1282.0
30 TraesCS5D01G270600 chr3B 83.539 729 106 11 2439 3163 252958229 252958947 0.000000e+00 669.0
31 TraesCS5D01G270600 chr3B 87.810 525 54 8 1625 2140 252957445 252957968 1.450000e-169 606.0
32 TraesCS5D01G270600 chr3B 85.319 470 50 12 1097 1562 252956910 252957364 7.120000e-128 468.0
33 TraesCS5D01G270600 chr3B 94.000 50 3 0 2308 2357 252958103 252958152 5.040000e-10 76.8
34 TraesCS5D01G270600 chr6A 91.340 843 41 18 3866 4700 474116035 474116853 0.000000e+00 1123.0
35 TraesCS5D01G270600 chr6A 90.855 842 42 14 3869 4700 410777003 410777819 0.000000e+00 1096.0
36 TraesCS5D01G270600 chr4B 89.164 849 54 19 3862 4700 195440460 195439640 0.000000e+00 1024.0
37 TraesCS5D01G270600 chr7A 88.941 850 48 22 3865 4700 692302346 692301529 0.000000e+00 1007.0
38 TraesCS5D01G270600 chr7A 85.714 336 37 8 1231 1559 221741695 221741364 1.250000e-90 344.0
39 TraesCS5D01G270600 chr3D 83.850 1065 133 25 1097 2140 174455356 174456402 0.000000e+00 977.0
40 TraesCS5D01G270600 chr3D 93.204 618 29 7 1572 2189 584112531 584111927 0.000000e+00 896.0
41 TraesCS5D01G270600 chr3D 83.951 729 103 11 2439 3163 174456666 174457384 0.000000e+00 686.0
42 TraesCS5D01G270600 chr3D 85.714 70 9 1 2308 2377 174456538 174456606 6.520000e-09 73.1
43 TraesCS5D01G270600 chr3A 83.448 725 105 13 2447 3163 213257704 213258421 0.000000e+00 660.0
44 TraesCS5D01G270600 chr3A 88.550 524 52 5 1625 2140 213256900 213257423 3.090000e-176 628.0
45 TraesCS5D01G270600 chr3A 85.501 469 51 9 1097 1562 213256373 213256827 1.530000e-129 473.0
46 TraesCS5D01G270600 chr3A 88.406 69 1 1 3866 3927 708544270 708544338 5.040000e-10 76.8
47 TraesCS5D01G270600 chr3A 92.000 50 4 0 2308 2357 213257547 213257596 2.350000e-08 71.3
48 TraesCS5D01G270600 chrUn 83.800 500 78 3 1628 2124 86286135 86286634 5.510000e-129 472.0
49 TraesCS5D01G270600 chr4D 80.071 567 61 29 4138 4700 313883593 313884111 1.600000e-99 374.0
50 TraesCS5D01G270600 chr7D 85.841 339 39 6 1231 1563 208656645 208656310 7.480000e-93 351.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G270600 chr5D 374294334 374299033 4699 False 8680.000000 8680 100.000000 1 4700 1 chr5D.!!$F1 4699
1 TraesCS5D01G270600 chr5D 468338606 468339452 846 True 1404.000000 1404 96.820000 3865 4700 1 chr5D.!!$R1 835
2 TraesCS5D01G270600 chr5D 468324561 468325407 846 False 1393.000000 1393 96.580000 3866 4700 1 chr5D.!!$F2 834
3 TraesCS5D01G270600 chr5B 446007912 446011285 3373 True 1254.233333 2444 90.386333 2 3417 3 chr5B.!!$R1 3415
4 TraesCS5D01G270600 chr5B 530749056 530749712 656 False 965.000000 965 93.475000 3866 4511 1 chr5B.!!$F2 645
5 TraesCS5D01G270600 chr5B 446411212 446414766 3554 False 891.275000 2002 93.562750 841 3865 4 chr5B.!!$F4 3024
6 TraesCS5D01G270600 chr5B 447204077 447209301 5224 True 631.342857 1666 91.290286 1 3847 7 chr5B.!!$R2 3846
7 TraesCS5D01G270600 chr5B 446365020 446365849 829 False 375.500000 595 91.340500 1 799 2 chr5B.!!$F3 798
8 TraesCS5D01G270600 chr5A 476071863 476075201 3338 False 825.800000 2146 91.017000 2 3417 5 chr5A.!!$F2 3415
9 TraesCS5D01G270600 chr1D 410690528 410691372 844 True 1402.000000 1402 96.816000 3866 4700 1 chr1D.!!$R1 834
10 TraesCS5D01G270600 chr7B 6366923 6367769 846 True 1282.000000 1282 94.276000 3866 4700 1 chr7B.!!$R1 834
11 TraesCS5D01G270600 chr3B 95450795 95451641 846 False 1282.000000 1282 94.249000 3866 4700 1 chr3B.!!$F1 834
12 TraesCS5D01G270600 chr3B 252956910 252958947 2037 False 454.950000 669 87.667000 1097 3163 4 chr3B.!!$F2 2066
13 TraesCS5D01G270600 chr6A 474116035 474116853 818 False 1123.000000 1123 91.340000 3866 4700 1 chr6A.!!$F2 834
14 TraesCS5D01G270600 chr6A 410777003 410777819 816 False 1096.000000 1096 90.855000 3869 4700 1 chr6A.!!$F1 831
15 TraesCS5D01G270600 chr4B 195439640 195440460 820 True 1024.000000 1024 89.164000 3862 4700 1 chr4B.!!$R1 838
16 TraesCS5D01G270600 chr7A 692301529 692302346 817 True 1007.000000 1007 88.941000 3865 4700 1 chr7A.!!$R2 835
17 TraesCS5D01G270600 chr3D 584111927 584112531 604 True 896.000000 896 93.204000 1572 2189 1 chr3D.!!$R1 617
18 TraesCS5D01G270600 chr3D 174455356 174457384 2028 False 578.700000 977 84.505000 1097 3163 3 chr3D.!!$F1 2066
19 TraesCS5D01G270600 chr3A 213256373 213258421 2048 False 458.075000 660 87.374750 1097 3163 4 chr3A.!!$F2 2066
20 TraesCS5D01G270600 chr4D 313883593 313884111 518 False 374.000000 374 80.071000 4138 4700 1 chr4D.!!$F1 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 2298 0.179094 TCCCGCGCCTATAACAACAG 60.179 55.000 0.00 0.0 0.00 3.16 F
1490 2818 1.062685 CGACGTCATCTCCCTCGTG 59.937 63.158 17.16 0.0 36.67 4.35 F
2226 4473 0.109781 CAAACATTTCGTGGGCTCGG 60.110 55.000 3.36 0.0 0.00 4.63 F
2229 4476 0.828022 ACATTTCGTGGGCTCGGATA 59.172 50.000 3.36 0.0 0.00 2.59 F
3509 6214 0.950836 TGTGCACCAGATGAAAACGG 59.049 50.000 15.69 0.0 0.00 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2148 4003 0.037882 TCCTCAAGTGCGCAGAGAAG 60.038 55.000 22.63 13.22 0.00 2.85 R
2306 4594 0.681175 GCAAAAGCCATTGGACCTGT 59.319 50.000 6.95 0.00 0.00 4.00 R
3607 6312 0.247736 GAGTGTGCCTCCTGAACGAT 59.752 55.000 0.00 0.00 33.79 3.73 R
3610 6315 0.394565 ACAGAGTGTGCCTCCTGAAC 59.605 55.000 0.00 0.00 41.47 3.18 R
4525 7280 4.701956 ACTTGAATTAGAATTGCACGGG 57.298 40.909 0.00 0.00 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.621794 GCCAATGATGAGTAATCGCAAC 58.378 45.455 0.00 0.00 38.22 4.17
55 60 1.798813 CAACTCCAGGTAACGCACTTC 59.201 52.381 0.00 0.00 46.39 3.01
61 68 0.319297 AGGTAACGCACTTCACGGTC 60.319 55.000 0.00 0.00 46.39 4.79
117 124 2.580326 CATTGCGGGCGTGCATTC 60.580 61.111 3.81 0.00 45.78 2.67
142 149 2.610833 GGGAAACGACATCGATTTACCC 59.389 50.000 8.54 6.78 43.02 3.69
143 150 3.528532 GGAAACGACATCGATTTACCCT 58.471 45.455 8.54 0.00 43.02 4.34
144 151 3.937079 GGAAACGACATCGATTTACCCTT 59.063 43.478 8.54 0.00 43.02 3.95
145 152 4.033702 GGAAACGACATCGATTTACCCTTC 59.966 45.833 8.54 0.00 43.02 3.46
146 153 4.467198 AACGACATCGATTTACCCTTCT 57.533 40.909 8.54 0.00 43.02 2.85
147 154 5.587388 AACGACATCGATTTACCCTTCTA 57.413 39.130 8.54 0.00 43.02 2.10
148 155 5.587388 ACGACATCGATTTACCCTTCTAA 57.413 39.130 8.54 0.00 43.02 2.10
149 156 5.346522 ACGACATCGATTTACCCTTCTAAC 58.653 41.667 8.54 0.00 43.02 2.34
150 157 4.440103 CGACATCGATTTACCCTTCTAACG 59.560 45.833 0.00 0.00 43.02 3.18
151 158 5.334724 ACATCGATTTACCCTTCTAACGT 57.665 39.130 0.00 0.00 0.00 3.99
152 159 5.727434 ACATCGATTTACCCTTCTAACGTT 58.273 37.500 5.88 5.88 0.00 3.99
153 160 5.809051 ACATCGATTTACCCTTCTAACGTTC 59.191 40.000 2.82 0.00 0.00 3.95
154 161 4.747810 TCGATTTACCCTTCTAACGTTCC 58.252 43.478 2.82 0.00 0.00 3.62
155 162 3.867493 CGATTTACCCTTCTAACGTTCCC 59.133 47.826 2.82 0.00 0.00 3.97
156 163 3.701205 TTTACCCTTCTAACGTTCCCC 57.299 47.619 2.82 0.00 0.00 4.81
157 164 1.571955 TACCCTTCTAACGTTCCCCC 58.428 55.000 2.82 0.00 0.00 5.40
432 627 2.357034 CCACGTCCGACCACCAAG 60.357 66.667 0.00 0.00 0.00 3.61
544 1681 4.035102 GCCCCGGCAGGAGTCTTT 62.035 66.667 3.68 0.00 41.02 2.52
545 1682 2.666098 GCCCCGGCAGGAGTCTTTA 61.666 63.158 3.68 0.00 41.02 1.85
546 1683 1.984288 GCCCCGGCAGGAGTCTTTAT 61.984 60.000 3.68 0.00 41.02 1.40
547 1684 0.546598 CCCCGGCAGGAGTCTTTATT 59.453 55.000 3.68 0.00 41.02 1.40
548 1685 1.766496 CCCCGGCAGGAGTCTTTATTA 59.234 52.381 3.68 0.00 41.02 0.98
550 1687 2.224305 CCCGGCAGGAGTCTTTATTAGG 60.224 54.545 3.68 0.00 41.02 2.69
591 1739 1.805945 GTCTGGACGCCACATCGAC 60.806 63.158 0.00 0.00 0.00 4.20
700 1857 1.412453 TTAGTGGTGTGGGGCTTCGT 61.412 55.000 0.00 0.00 0.00 3.85
842 2007 3.825160 GACACTTGGACCTGCCGCA 62.825 63.158 0.00 0.00 40.66 5.69
909 2081 6.754209 TGCATTTTCAAAACTGTAAATCACGT 59.246 30.769 0.00 0.00 0.00 4.49
969 2293 1.485032 CGTGTTCCCGCGCCTATAAC 61.485 60.000 0.00 2.04 37.82 1.89
974 2298 0.179094 TCCCGCGCCTATAACAACAG 60.179 55.000 0.00 0.00 0.00 3.16
1021 2345 3.381272 CACCTCAAGAAGCAACCAAGAAA 59.619 43.478 0.00 0.00 0.00 2.52
1490 2818 1.062685 CGACGTCATCTCCCTCGTG 59.937 63.158 17.16 0.00 36.67 4.35
1606 2949 2.619840 TTCCTGCTCGATCTCAGCGC 62.620 60.000 0.00 0.00 40.01 5.92
1708 3117 4.101790 GCGGCACCACCATGTTCG 62.102 66.667 0.00 0.00 39.03 3.95
2042 3458 1.376424 CCACGCTCTGCCTCATGTT 60.376 57.895 0.00 0.00 0.00 2.71
2126 3542 1.671850 GCTCAGCTTGCTTGGTACGTA 60.672 52.381 0.00 0.00 0.00 3.57
2127 3543 1.993370 CTCAGCTTGCTTGGTACGTAC 59.007 52.381 17.56 17.56 0.00 3.67
2128 3544 1.076332 CAGCTTGCTTGGTACGTACC 58.924 55.000 33.42 33.42 46.62 3.34
2148 4003 5.351948 ACCTTATCTTTCTTGCTCTCTCC 57.648 43.478 0.00 0.00 0.00 3.71
2149 4004 5.029474 ACCTTATCTTTCTTGCTCTCTCCT 58.971 41.667 0.00 0.00 0.00 3.69
2155 4017 4.220382 TCTTTCTTGCTCTCTCCTTCTCTG 59.780 45.833 0.00 0.00 0.00 3.35
2156 4018 1.824230 TCTTGCTCTCTCCTTCTCTGC 59.176 52.381 0.00 0.00 0.00 4.26
2222 4469 0.671251 TGGTCAAACATTTCGTGGGC 59.329 50.000 0.00 0.00 0.00 5.36
2224 4471 1.068541 GGTCAAACATTTCGTGGGCTC 60.069 52.381 0.00 0.00 0.00 4.70
2225 4472 0.871722 TCAAACATTTCGTGGGCTCG 59.128 50.000 0.00 0.00 0.00 5.03
2226 4473 0.109781 CAAACATTTCGTGGGCTCGG 60.110 55.000 3.36 0.00 0.00 4.63
2229 4476 0.828022 ACATTTCGTGGGCTCGGATA 59.172 50.000 3.36 0.00 0.00 2.59
2230 4477 1.208535 ACATTTCGTGGGCTCGGATAA 59.791 47.619 3.36 0.00 0.00 1.75
2231 4478 2.285083 CATTTCGTGGGCTCGGATAAA 58.715 47.619 3.36 0.00 0.00 1.40
2232 4479 2.476126 TTTCGTGGGCTCGGATAAAA 57.524 45.000 3.36 0.00 0.00 1.52
2233 4480 2.702592 TTCGTGGGCTCGGATAAAAT 57.297 45.000 3.36 0.00 0.00 1.82
2234 4481 2.702592 TCGTGGGCTCGGATAAAATT 57.297 45.000 3.36 0.00 0.00 1.82
2235 4482 2.285083 TCGTGGGCTCGGATAAAATTG 58.715 47.619 3.36 0.00 0.00 2.32
2236 4483 2.093394 TCGTGGGCTCGGATAAAATTGA 60.093 45.455 3.36 0.00 0.00 2.57
2237 4484 2.680841 CGTGGGCTCGGATAAAATTGAA 59.319 45.455 0.00 0.00 0.00 2.69
2238 4485 3.315191 CGTGGGCTCGGATAAAATTGAAT 59.685 43.478 0.00 0.00 0.00 2.57
2239 4486 4.610945 GTGGGCTCGGATAAAATTGAATG 58.389 43.478 0.00 0.00 0.00 2.67
2240 4487 4.338118 GTGGGCTCGGATAAAATTGAATGA 59.662 41.667 0.00 0.00 0.00 2.57
2241 4488 4.952957 TGGGCTCGGATAAAATTGAATGAA 59.047 37.500 0.00 0.00 0.00 2.57
2242 4489 5.163561 TGGGCTCGGATAAAATTGAATGAAC 60.164 40.000 0.00 0.00 0.00 3.18
2243 4490 5.281727 GGCTCGGATAAAATTGAATGAACC 58.718 41.667 0.00 0.00 0.00 3.62
2306 4594 5.429762 AGTTATCTGATGGGGATCTTTGTGA 59.570 40.000 0.00 0.00 0.00 3.58
2434 4778 4.022935 TGCAACAGAACTGAATGGATCAAC 60.023 41.667 8.87 0.00 37.67 3.18
2456 4803 1.481871 CTGATTTCATGCAGGGCCTT 58.518 50.000 1.32 0.00 0.00 4.35
2570 4917 3.708403 AGTGCACCAAGAATCATCTCA 57.292 42.857 14.63 0.00 33.77 3.27
2605 4957 4.488879 TCAGAGACAATCAATCTGTCACG 58.511 43.478 5.81 0.00 44.68 4.35
2622 4977 2.081212 CGTGAACTCACTCGACGGC 61.081 63.158 8.16 0.00 44.34 5.68
2623 4978 2.081212 GTGAACTCACTCGACGGCG 61.081 63.158 2.87 2.87 43.25 6.46
2624 4979 2.504244 GAACTCACTCGACGGCGG 60.504 66.667 12.58 3.71 38.28 6.13
2625 4980 3.966026 GAACTCACTCGACGGCGGG 62.966 68.421 10.28 10.28 45.58 6.13
3174 5529 3.846360 ACGCTAGGTAAGTTTACAGCTG 58.154 45.455 13.48 13.48 33.16 4.24
3254 5675 4.709397 ACTCTGGTACTGAATCCTCTTCTG 59.291 45.833 0.00 0.00 35.46 3.02
3369 5825 9.748708 CTGTAGACTGTAGGTTACTAGTAGTAG 57.251 40.741 9.90 2.87 31.47 2.57
3370 5826 9.261035 TGTAGACTGTAGGTTACTAGTAGTAGT 57.739 37.037 14.57 14.57 42.49 2.73
3417 5873 6.020971 TGTTGTACAGTGTATAGTCAGTGG 57.979 41.667 6.21 0.00 41.45 4.00
3418 5874 5.537295 TGTTGTACAGTGTATAGTCAGTGGT 59.463 40.000 6.21 0.00 41.45 4.16
3421 5877 8.896744 GTTGTACAGTGTATAGTCAGTGGTATA 58.103 37.037 6.21 0.00 41.45 1.47
3423 5879 8.488668 TGTACAGTGTATAGTCAGTGGTATAGA 58.511 37.037 6.21 0.00 41.45 1.98
3424 5880 9.504708 GTACAGTGTATAGTCAGTGGTATAGAT 57.495 37.037 6.21 0.00 41.45 1.98
3428 5884 9.742144 AGTGTATAGTCAGTGGTATAGATAAGG 57.258 37.037 0.00 0.00 0.00 2.69
3429 5885 8.460428 GTGTATAGTCAGTGGTATAGATAAGGC 58.540 40.741 0.00 0.00 0.00 4.35
3430 5886 6.761099 ATAGTCAGTGGTATAGATAAGGCG 57.239 41.667 0.00 0.00 0.00 5.52
3432 5888 5.326069 AGTCAGTGGTATAGATAAGGCGAT 58.674 41.667 0.00 0.00 0.00 4.58
3433 5889 5.775701 AGTCAGTGGTATAGATAAGGCGATT 59.224 40.000 0.00 0.00 0.00 3.34
3434 5890 5.864474 GTCAGTGGTATAGATAAGGCGATTG 59.136 44.000 0.00 0.00 0.00 2.67
3436 5892 5.635280 CAGTGGTATAGATAAGGCGATTGTG 59.365 44.000 0.00 0.00 0.00 3.33
3437 5893 4.389077 GTGGTATAGATAAGGCGATTGTGC 59.611 45.833 0.00 0.00 0.00 4.57
3438 5894 4.039852 TGGTATAGATAAGGCGATTGTGCA 59.960 41.667 0.00 0.00 36.28 4.57
3440 5896 2.698855 AGATAAGGCGATTGTGCAGT 57.301 45.000 0.00 0.00 36.28 4.40
3441 5897 2.555199 AGATAAGGCGATTGTGCAGTC 58.445 47.619 0.00 0.00 36.28 3.51
3443 5899 1.725641 TAAGGCGATTGTGCAGTCTG 58.274 50.000 0.00 0.00 36.28 3.51
3458 5914 4.054671 GCAGTCTGCAGTTGATCTATACC 58.945 47.826 20.16 0.00 44.26 2.73
3459 5915 4.626042 CAGTCTGCAGTTGATCTATACCC 58.374 47.826 14.67 0.00 0.00 3.69
3460 5916 4.100035 CAGTCTGCAGTTGATCTATACCCA 59.900 45.833 14.67 0.00 0.00 4.51
3461 5917 4.716784 AGTCTGCAGTTGATCTATACCCAA 59.283 41.667 14.67 0.00 0.00 4.12
3462 5918 4.811557 GTCTGCAGTTGATCTATACCCAAC 59.188 45.833 14.67 0.00 40.14 3.77
3464 5920 5.023533 TGCAGTTGATCTATACCCAACTC 57.976 43.478 0.00 0.00 45.93 3.01
3465 5921 4.716784 TGCAGTTGATCTATACCCAACTCT 59.283 41.667 0.00 0.00 45.93 3.24
3466 5922 5.897250 TGCAGTTGATCTATACCCAACTCTA 59.103 40.000 0.00 0.00 45.93 2.43
3467 5923 6.183360 TGCAGTTGATCTATACCCAACTCTAC 60.183 42.308 0.00 0.00 45.93 2.59
3469 5925 6.323996 CAGTTGATCTATACCCAACTCTACCA 59.676 42.308 0.00 0.00 45.93 3.25
3470 5926 7.015682 CAGTTGATCTATACCCAACTCTACCAT 59.984 40.741 0.00 0.00 45.93 3.55
3471 5927 6.918067 TGATCTATACCCAACTCTACCATG 57.082 41.667 0.00 0.00 0.00 3.66
3472 5928 6.382087 TGATCTATACCCAACTCTACCATGT 58.618 40.000 0.00 0.00 0.00 3.21
3473 5929 6.267699 TGATCTATACCCAACTCTACCATGTG 59.732 42.308 0.00 0.00 0.00 3.21
3489 6194 5.772825 CCATGTGGTTTCAGAAAAGAGAA 57.227 39.130 0.00 0.00 0.00 2.87
3490 6195 6.336842 CCATGTGGTTTCAGAAAAGAGAAT 57.663 37.500 0.00 0.00 0.00 2.40
3493 6198 6.135290 TGTGGTTTCAGAAAAGAGAATGTG 57.865 37.500 0.00 0.00 0.00 3.21
3499 6204 3.817084 TCAGAAAAGAGAATGTGCACCAG 59.183 43.478 15.69 0.00 0.00 4.00
3502 6207 4.458295 AGAAAAGAGAATGTGCACCAGATG 59.542 41.667 15.69 0.00 0.00 2.90
3505 6210 4.025040 AGAGAATGTGCACCAGATGAAA 57.975 40.909 15.69 0.00 0.00 2.69
3508 6213 2.995466 ATGTGCACCAGATGAAAACG 57.005 45.000 15.69 0.00 0.00 3.60
3509 6214 0.950836 TGTGCACCAGATGAAAACGG 59.049 50.000 15.69 0.00 0.00 4.44
3510 6215 1.234821 GTGCACCAGATGAAAACGGA 58.765 50.000 5.22 0.00 0.00 4.69
3512 6217 1.879380 TGCACCAGATGAAAACGGAAG 59.121 47.619 0.00 0.00 0.00 3.46
3513 6218 1.200020 GCACCAGATGAAAACGGAAGG 59.800 52.381 0.00 0.00 0.00 3.46
3514 6219 2.778299 CACCAGATGAAAACGGAAGGA 58.222 47.619 0.00 0.00 0.00 3.36
3515 6220 3.347216 CACCAGATGAAAACGGAAGGAT 58.653 45.455 0.00 0.00 0.00 3.24
3516 6221 3.127548 CACCAGATGAAAACGGAAGGATG 59.872 47.826 0.00 0.00 0.00 3.51
3517 6222 3.009033 ACCAGATGAAAACGGAAGGATGA 59.991 43.478 0.00 0.00 0.00 2.92
3518 6223 4.009675 CCAGATGAAAACGGAAGGATGAA 58.990 43.478 0.00 0.00 0.00 2.57
3519 6224 4.095483 CCAGATGAAAACGGAAGGATGAAG 59.905 45.833 0.00 0.00 0.00 3.02
3520 6225 4.095483 CAGATGAAAACGGAAGGATGAAGG 59.905 45.833 0.00 0.00 0.00 3.46
3521 6226 3.780804 TGAAAACGGAAGGATGAAGGA 57.219 42.857 0.00 0.00 0.00 3.36
3524 6229 3.790089 AAACGGAAGGATGAAGGAGTT 57.210 42.857 0.00 0.00 0.00 3.01
3525 6230 3.336138 AACGGAAGGATGAAGGAGTTC 57.664 47.619 0.00 0.00 0.00 3.01
3526 6231 1.204941 ACGGAAGGATGAAGGAGTTCG 59.795 52.381 0.00 0.00 35.17 3.95
3527 6232 1.471676 CGGAAGGATGAAGGAGTTCGG 60.472 57.143 0.00 0.00 35.17 4.30
3528 6233 1.555533 GGAAGGATGAAGGAGTTCGGT 59.444 52.381 0.00 0.00 35.17 4.69
3529 6234 2.764572 GGAAGGATGAAGGAGTTCGGTA 59.235 50.000 0.00 0.00 35.17 4.02
3530 6235 3.388350 GGAAGGATGAAGGAGTTCGGTAT 59.612 47.826 0.00 0.00 35.17 2.73
3531 6236 4.587684 GGAAGGATGAAGGAGTTCGGTATA 59.412 45.833 0.00 0.00 35.17 1.47
3532 6237 5.246429 GGAAGGATGAAGGAGTTCGGTATAT 59.754 44.000 0.00 0.00 35.17 0.86
3533 6238 6.239629 GGAAGGATGAAGGAGTTCGGTATATT 60.240 42.308 0.00 0.00 35.17 1.28
3534 6239 6.347859 AGGATGAAGGAGTTCGGTATATTC 57.652 41.667 0.00 0.00 35.17 1.75
3535 6240 5.839063 AGGATGAAGGAGTTCGGTATATTCA 59.161 40.000 0.00 0.00 35.17 2.57
3536 6241 5.927115 GGATGAAGGAGTTCGGTATATTCAC 59.073 44.000 0.00 0.00 35.17 3.18
3537 6242 5.925506 TGAAGGAGTTCGGTATATTCACA 57.074 39.130 0.00 0.00 35.17 3.58
3538 6243 6.479972 TGAAGGAGTTCGGTATATTCACAT 57.520 37.500 0.00 0.00 35.17 3.21
3539 6244 6.280643 TGAAGGAGTTCGGTATATTCACATG 58.719 40.000 0.00 0.00 35.17 3.21
3540 6245 5.215252 AGGAGTTCGGTATATTCACATGG 57.785 43.478 0.00 0.00 0.00 3.66
3541 6246 4.899457 AGGAGTTCGGTATATTCACATGGA 59.101 41.667 0.00 0.00 0.00 3.41
3542 6247 5.365605 AGGAGTTCGGTATATTCACATGGAA 59.634 40.000 0.00 0.00 40.46 3.53
3543 6248 6.053005 GGAGTTCGGTATATTCACATGGAAA 58.947 40.000 0.00 0.00 39.39 3.13
3544 6249 6.710744 GGAGTTCGGTATATTCACATGGAAAT 59.289 38.462 0.00 0.00 39.39 2.17
3545 6250 7.307989 GGAGTTCGGTATATTCACATGGAAATG 60.308 40.741 0.00 0.00 39.39 2.32
3546 6251 6.486657 AGTTCGGTATATTCACATGGAAATGG 59.513 38.462 0.00 0.00 39.39 3.16
3547 6252 6.181206 TCGGTATATTCACATGGAAATGGA 57.819 37.500 0.00 0.00 39.39 3.41
3548 6253 6.596621 TCGGTATATTCACATGGAAATGGAA 58.403 36.000 0.00 0.00 39.39 3.53
3549 6254 6.485313 TCGGTATATTCACATGGAAATGGAAC 59.515 38.462 0.00 0.00 39.39 3.62
3550 6255 6.293955 CGGTATATTCACATGGAAATGGAACC 60.294 42.308 0.00 5.40 39.39 3.62
3551 6256 5.772825 ATATTCACATGGAAATGGAACCG 57.227 39.130 0.00 0.00 39.39 4.44
3552 6257 1.173043 TCACATGGAAATGGAACCGC 58.827 50.000 0.00 0.00 0.00 5.68
3553 6258 1.176527 CACATGGAAATGGAACCGCT 58.823 50.000 0.00 0.00 0.00 5.52
3554 6259 1.545582 CACATGGAAATGGAACCGCTT 59.454 47.619 0.00 0.00 0.00 4.68
3555 6260 1.545582 ACATGGAAATGGAACCGCTTG 59.454 47.619 0.00 0.00 0.00 4.01
3556 6261 1.818060 CATGGAAATGGAACCGCTTGA 59.182 47.619 0.00 0.00 0.00 3.02
3557 6262 2.214376 TGGAAATGGAACCGCTTGAT 57.786 45.000 0.00 0.00 0.00 2.57
3558 6263 3.358111 TGGAAATGGAACCGCTTGATA 57.642 42.857 0.00 0.00 0.00 2.15
3559 6264 3.013921 TGGAAATGGAACCGCTTGATAC 58.986 45.455 0.00 0.00 0.00 2.24
3560 6265 3.013921 GGAAATGGAACCGCTTGATACA 58.986 45.455 0.00 0.00 0.00 2.29
3561 6266 3.442273 GGAAATGGAACCGCTTGATACAA 59.558 43.478 0.00 0.00 0.00 2.41
3562 6267 4.082463 GGAAATGGAACCGCTTGATACAAA 60.082 41.667 0.00 0.00 0.00 2.83
3563 6268 5.394115 GGAAATGGAACCGCTTGATACAAAT 60.394 40.000 0.00 0.00 0.00 2.32
3564 6269 5.659440 AATGGAACCGCTTGATACAAATT 57.341 34.783 0.00 0.00 0.00 1.82
3565 6270 5.659440 ATGGAACCGCTTGATACAAATTT 57.341 34.783 0.00 0.00 0.00 1.82
3566 6271 5.461032 TGGAACCGCTTGATACAAATTTT 57.539 34.783 0.00 0.00 0.00 1.82
3567 6272 6.576662 TGGAACCGCTTGATACAAATTTTA 57.423 33.333 0.00 0.00 0.00 1.52
3568 6273 6.383415 TGGAACCGCTTGATACAAATTTTAC 58.617 36.000 0.00 0.00 0.00 2.01
3569 6274 6.016192 TGGAACCGCTTGATACAAATTTTACA 60.016 34.615 0.00 0.00 0.00 2.41
3570 6275 7.033185 GGAACCGCTTGATACAAATTTTACAT 58.967 34.615 0.00 0.00 0.00 2.29
3571 6276 7.009174 GGAACCGCTTGATACAAATTTTACATG 59.991 37.037 0.00 0.00 0.00 3.21
3572 6277 5.804979 ACCGCTTGATACAAATTTTACATGC 59.195 36.000 0.00 0.00 0.00 4.06
3573 6278 5.231991 CCGCTTGATACAAATTTTACATGCC 59.768 40.000 0.00 0.00 0.00 4.40
3574 6279 5.052436 CGCTTGATACAAATTTTACATGCCG 60.052 40.000 0.00 0.00 0.00 5.69
3575 6280 5.804979 GCTTGATACAAATTTTACATGCCGT 59.195 36.000 0.00 0.00 0.00 5.68
3576 6281 6.020678 GCTTGATACAAATTTTACATGCCGTC 60.021 38.462 0.00 0.00 0.00 4.79
3577 6282 6.751514 TGATACAAATTTTACATGCCGTCT 57.248 33.333 0.00 0.00 0.00 4.18
3578 6283 6.781138 TGATACAAATTTTACATGCCGTCTC 58.219 36.000 0.00 0.00 0.00 3.36
3579 6284 4.078363 ACAAATTTTACATGCCGTCTCG 57.922 40.909 0.00 0.00 0.00 4.04
3580 6285 3.500680 ACAAATTTTACATGCCGTCTCGT 59.499 39.130 0.00 0.00 0.00 4.18
3581 6286 4.691685 ACAAATTTTACATGCCGTCTCGTA 59.308 37.500 0.00 0.00 0.00 3.43
3582 6287 5.163893 ACAAATTTTACATGCCGTCTCGTAG 60.164 40.000 0.00 0.00 0.00 3.51
3583 6288 3.853831 TTTTACATGCCGTCTCGTAGA 57.146 42.857 0.00 0.00 0.00 2.59
3584 6289 4.380841 TTTTACATGCCGTCTCGTAGAT 57.619 40.909 0.00 0.00 33.89 1.98
3585 6290 5.503662 TTTTACATGCCGTCTCGTAGATA 57.496 39.130 0.00 0.00 33.89 1.98
3586 6291 5.503662 TTTACATGCCGTCTCGTAGATAA 57.496 39.130 0.00 0.00 33.89 1.75
3587 6292 5.503662 TTACATGCCGTCTCGTAGATAAA 57.496 39.130 0.00 0.00 33.89 1.40
3588 6293 3.966154 ACATGCCGTCTCGTAGATAAAG 58.034 45.455 0.00 0.00 33.89 1.85
3589 6294 3.630769 ACATGCCGTCTCGTAGATAAAGA 59.369 43.478 0.00 0.00 33.89 2.52
3590 6295 4.097437 ACATGCCGTCTCGTAGATAAAGAA 59.903 41.667 0.00 0.00 33.89 2.52
3591 6296 4.707030 TGCCGTCTCGTAGATAAAGAAA 57.293 40.909 0.00 0.00 33.89 2.52
3592 6297 5.063180 TGCCGTCTCGTAGATAAAGAAAA 57.937 39.130 0.00 0.00 33.89 2.29
3593 6298 5.100259 TGCCGTCTCGTAGATAAAGAAAAG 58.900 41.667 0.00 0.00 33.89 2.27
3594 6299 5.106038 TGCCGTCTCGTAGATAAAGAAAAGA 60.106 40.000 0.00 0.00 33.89 2.52
3595 6300 5.803967 GCCGTCTCGTAGATAAAGAAAAGAA 59.196 40.000 0.00 0.00 33.89 2.52
3596 6301 6.476053 GCCGTCTCGTAGATAAAGAAAAGAAT 59.524 38.462 0.00 0.00 33.89 2.40
3597 6302 7.646922 GCCGTCTCGTAGATAAAGAAAAGAATA 59.353 37.037 0.00 0.00 33.89 1.75
3598 6303 9.680315 CCGTCTCGTAGATAAAGAAAAGAATAT 57.320 33.333 0.00 0.00 33.89 1.28
3611 6316 9.799106 AAAGAAAAGAATATGATCCCATATCGT 57.201 29.630 0.00 0.00 43.27 3.73
3612 6317 9.799106 AAGAAAAGAATATGATCCCATATCGTT 57.201 29.630 0.00 0.00 43.27 3.85
3613 6318 9.442047 AGAAAAGAATATGATCCCATATCGTTC 57.558 33.333 0.00 0.00 43.27 3.95
3614 6319 9.219603 GAAAAGAATATGATCCCATATCGTTCA 57.780 33.333 0.00 0.00 43.27 3.18
3615 6320 8.783833 AAAGAATATGATCCCATATCGTTCAG 57.216 34.615 0.00 0.00 43.27 3.02
3616 6321 6.882656 AGAATATGATCCCATATCGTTCAGG 58.117 40.000 0.00 0.00 43.27 3.86
3617 6322 6.669591 AGAATATGATCCCATATCGTTCAGGA 59.330 38.462 0.00 0.00 43.27 3.86
3618 6323 4.815533 ATGATCCCATATCGTTCAGGAG 57.184 45.455 0.00 0.00 0.00 3.69
3619 6324 2.899900 TGATCCCATATCGTTCAGGAGG 59.100 50.000 0.00 0.00 0.00 4.30
3620 6325 1.048601 TCCCATATCGTTCAGGAGGC 58.951 55.000 0.00 0.00 0.00 4.70
3621 6326 0.758734 CCCATATCGTTCAGGAGGCA 59.241 55.000 0.00 0.00 0.00 4.75
3622 6327 1.541233 CCCATATCGTTCAGGAGGCAC 60.541 57.143 0.00 0.00 0.00 5.01
3623 6328 1.138859 CCATATCGTTCAGGAGGCACA 59.861 52.381 0.00 0.00 0.00 4.57
3624 6329 2.205074 CATATCGTTCAGGAGGCACAC 58.795 52.381 0.00 0.00 0.00 3.82
3626 6331 0.247736 ATCGTTCAGGAGGCACACTC 59.752 55.000 0.00 0.00 45.84 3.51
3632 6337 1.827344 TCAGGAGGCACACTCTGTATG 59.173 52.381 0.00 0.00 45.83 2.39
3639 6344 2.079158 GCACACTCTGTATGCACACAT 58.921 47.619 0.00 0.00 39.23 3.21
3642 6347 4.333649 GCACACTCTGTATGCACACATAAT 59.666 41.667 0.00 0.00 40.42 1.28
3650 6355 7.508687 TCTGTATGCACACATAATTCCACTAT 58.491 34.615 0.00 0.00 40.42 2.12
3651 6356 7.442062 TCTGTATGCACACATAATTCCACTATG 59.558 37.037 0.00 0.00 40.42 2.23
3653 6358 6.872628 ATGCACACATAATTCCACTATGAG 57.127 37.500 0.00 0.00 33.67 2.90
3741 6449 6.238897 CGTCCCAAGCAATGCCTTTATTATTA 60.239 38.462 0.00 0.00 0.00 0.98
3742 6450 6.923508 GTCCCAAGCAATGCCTTTATTATTAC 59.076 38.462 0.00 0.00 0.00 1.89
3743 6451 6.838612 TCCCAAGCAATGCCTTTATTATTACT 59.161 34.615 0.00 0.00 0.00 2.24
3744 6452 8.001875 TCCCAAGCAATGCCTTTATTATTACTA 58.998 33.333 0.00 0.00 0.00 1.82
3745 6453 8.806146 CCCAAGCAATGCCTTTATTATTACTAT 58.194 33.333 0.00 0.00 0.00 2.12
3786 6494 0.603065 TATCGCTCCCGGTGATGATG 59.397 55.000 0.00 0.00 43.98 3.07
3804 6512 0.611200 TGGACCGGAACATTCGACAT 59.389 50.000 9.46 0.00 0.00 3.06
3815 6523 4.613925 ACATTCGACATGATATCCTGCT 57.386 40.909 7.81 0.00 0.00 4.24
3816 6524 4.313282 ACATTCGACATGATATCCTGCTG 58.687 43.478 7.81 1.69 0.00 4.41
3817 6525 2.445565 TCGACATGATATCCTGCTGC 57.554 50.000 7.81 0.00 0.00 5.25
3818 6526 1.001293 TCGACATGATATCCTGCTGCC 59.999 52.381 7.81 0.00 0.00 4.85
3819 6527 1.818642 GACATGATATCCTGCTGCCC 58.181 55.000 7.81 0.00 0.00 5.36
3842 6550 5.221106 CCATTGCAATCGTGGTTGATAAGAT 60.221 40.000 9.53 0.00 0.00 2.40
3971 6686 5.823312 GGACACCCCTAATTTTCCTAGAAA 58.177 41.667 0.00 0.00 0.00 2.52
4209 6936 1.953138 CGCCGCCTATTCTGCAGAG 60.953 63.158 17.43 6.41 0.00 3.35
4262 6989 1.819208 GCACAGGTATGCCGCATCA 60.819 57.895 9.71 0.00 39.86 3.07
4263 6990 1.779025 GCACAGGTATGCCGCATCAG 61.779 60.000 9.71 1.13 39.86 2.90
4264 6991 0.179076 CACAGGTATGCCGCATCAGA 60.179 55.000 9.71 0.00 40.50 3.27
4265 6992 0.179073 ACAGGTATGCCGCATCAGAC 60.179 55.000 9.71 2.48 40.50 3.51
4266 6993 0.882042 CAGGTATGCCGCATCAGACC 60.882 60.000 9.71 12.20 45.94 3.85
4267 6994 1.598130 GGTATGCCGCATCAGACCC 60.598 63.158 9.71 0.00 41.25 4.46
4268 6995 1.146041 GTATGCCGCATCAGACCCA 59.854 57.895 9.71 0.00 0.00 4.51
4269 6996 0.882042 GTATGCCGCATCAGACCCAG 60.882 60.000 9.71 0.00 0.00 4.45
4270 6997 2.043604 TATGCCGCATCAGACCCAGG 62.044 60.000 9.71 0.00 0.00 4.45
4272 6999 4.864334 CCGCATCAGACCCAGGCC 62.864 72.222 0.00 0.00 0.00 5.19
4273 7000 3.790437 CGCATCAGACCCAGGCCT 61.790 66.667 0.00 0.00 0.00 5.19
4274 7001 2.124403 GCATCAGACCCAGGCCTG 60.124 66.667 26.87 26.87 0.00 4.85
4275 7002 2.673200 GCATCAGACCCAGGCCTGA 61.673 63.158 34.91 13.90 42.78 3.86
4276 7003 4.847278 ATCAGACCCAGGCCTGAT 57.153 55.556 34.91 21.58 43.20 2.90
4277 7004 0.108207 CATCAGACCCAGGCCTGATC 59.892 60.000 34.91 27.90 45.39 2.92
4333 7086 6.677913 TGCCTCAGCTTTTTGTAAATCTTAC 58.322 36.000 0.00 0.00 40.80 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.374758 GAGTTGGTCCCTGTCGCAG 60.375 63.158 0.52 0.52 0.00 5.18
117 124 5.176958 GGTAAATCGATGTCGTTTCCCTATG 59.823 44.000 0.00 0.00 40.80 2.23
232 389 0.811281 GCTGAAATTTCTCCCCGTGG 59.189 55.000 18.64 1.58 0.00 4.94
544 1681 1.744014 GCGGGGCGAGAACCTAATA 59.256 57.895 0.00 0.00 0.00 0.98
545 1682 2.504519 GCGGGGCGAGAACCTAAT 59.495 61.111 0.00 0.00 0.00 1.73
573 1721 1.805945 GTCGATGTGGCGTCCAGAC 60.806 63.158 0.00 0.61 32.34 3.51
591 1739 2.945008 AGTAATGATTGACGCATGTGGG 59.055 45.455 11.65 0.00 0.00 4.61
682 1839 1.412453 AACGAAGCCCCACACCACTA 61.412 55.000 0.00 0.00 0.00 2.74
693 1850 0.738975 GCTATCCCCAAAACGAAGCC 59.261 55.000 0.00 0.00 0.00 4.35
694 1851 0.738975 GGCTATCCCCAAAACGAAGC 59.261 55.000 0.00 0.00 0.00 3.86
700 1857 4.163839 CCATTTTCATGGCTATCCCCAAAA 59.836 41.667 0.00 0.00 43.95 2.44
909 2081 3.113514 TTGGCAGGCGAGTTCACCA 62.114 57.895 0.00 0.00 0.00 4.17
969 2293 3.370672 GTGTCCAAAAAGTTTGGCTGTTG 59.629 43.478 13.79 0.00 39.38 3.33
974 2298 2.276201 GTGGTGTCCAAAAAGTTTGGC 58.724 47.619 13.79 9.99 39.38 4.52
1090 2414 4.530857 GGTCCATGGCCGGTCGAG 62.531 72.222 6.96 0.00 0.00 4.04
1490 2818 1.886777 GAGGATGAAGCTGCCGAGC 60.887 63.158 0.00 0.00 46.64 5.03
1606 2949 3.490759 GGCCGCACGATGTCAGTG 61.491 66.667 0.00 0.00 42.15 3.66
2042 3458 2.338620 CGGTGTTGTCGGAGCAGA 59.661 61.111 0.00 0.00 0.00 4.26
2126 3542 5.029474 AGGAGAGAGCAAGAAAGATAAGGT 58.971 41.667 0.00 0.00 0.00 3.50
2127 3543 5.612725 AGGAGAGAGCAAGAAAGATAAGG 57.387 43.478 0.00 0.00 0.00 2.69
2128 3544 6.877236 AGAAGGAGAGAGCAAGAAAGATAAG 58.123 40.000 0.00 0.00 0.00 1.73
2148 4003 0.037882 TCCTCAAGTGCGCAGAGAAG 60.038 55.000 22.63 13.22 0.00 2.85
2149 4004 0.392706 TTCCTCAAGTGCGCAGAGAA 59.607 50.000 22.63 13.53 0.00 2.87
2155 4017 1.537202 AGTCATTTTCCTCAAGTGCGC 59.463 47.619 0.00 0.00 0.00 6.09
2156 4018 2.666619 GCAGTCATTTTCCTCAAGTGCG 60.667 50.000 0.00 0.00 0.00 5.34
2222 4469 6.851609 TGTGGTTCATTCAATTTTATCCGAG 58.148 36.000 0.00 0.00 0.00 4.63
2224 4471 8.477984 AAATGTGGTTCATTCAATTTTATCCG 57.522 30.769 0.00 0.00 44.85 4.18
2229 4476 7.289310 AGGGAAAATGTGGTTCATTCAATTTT 58.711 30.769 0.00 0.00 44.85 1.82
2230 4477 6.840527 AGGGAAAATGTGGTTCATTCAATTT 58.159 32.000 0.00 0.00 44.85 1.82
2231 4478 6.438186 AGGGAAAATGTGGTTCATTCAATT 57.562 33.333 0.00 0.00 44.85 2.32
2232 4479 6.438186 AAGGGAAAATGTGGTTCATTCAAT 57.562 33.333 0.00 0.00 44.85 2.57
2233 4480 5.885449 AAGGGAAAATGTGGTTCATTCAA 57.115 34.783 0.00 0.00 44.85 2.69
2234 4481 5.454471 CCAAAGGGAAAATGTGGTTCATTCA 60.454 40.000 0.00 0.00 40.20 2.57
2235 4482 4.996758 CCAAAGGGAAAATGTGGTTCATTC 59.003 41.667 0.00 0.00 40.20 2.67
2236 4483 4.746395 GCCAAAGGGAAAATGTGGTTCATT 60.746 41.667 0.00 0.00 41.75 2.57
2237 4484 3.244526 GCCAAAGGGAAAATGTGGTTCAT 60.245 43.478 0.00 0.00 35.52 2.57
2238 4485 2.103941 GCCAAAGGGAAAATGTGGTTCA 59.896 45.455 0.00 0.00 35.59 3.18
2239 4486 2.103941 TGCCAAAGGGAAAATGTGGTTC 59.896 45.455 0.00 0.00 35.59 3.62
2240 4487 2.122768 TGCCAAAGGGAAAATGTGGTT 58.877 42.857 0.00 0.00 35.59 3.67
2241 4488 1.416030 GTGCCAAAGGGAAAATGTGGT 59.584 47.619 0.00 0.00 35.59 4.16
2242 4489 1.270785 GGTGCCAAAGGGAAAATGTGG 60.271 52.381 0.00 0.00 35.59 4.17
2243 4490 1.270785 GGGTGCCAAAGGGAAAATGTG 60.271 52.381 0.00 0.00 35.59 3.21
2250 4505 2.203422 CAACGGGTGCCAAAGGGA 60.203 61.111 0.00 0.00 35.59 4.20
2306 4594 0.681175 GCAAAAGCCATTGGACCTGT 59.319 50.000 6.95 0.00 0.00 4.00
2360 4648 5.776744 AGAAAAAGGCTAGAAAATGTGCAG 58.223 37.500 0.00 0.00 0.00 4.41
2434 4778 1.731700 CCCTGCATGAAATCAGCCG 59.268 57.895 0.00 0.00 0.00 5.52
2456 4803 2.430694 CCTCGTCATCCACAGGACAATA 59.569 50.000 0.00 0.00 32.55 1.90
2605 4957 2.081212 CGCCGTCGAGTGAGTTCAC 61.081 63.158 4.09 4.09 46.77 3.18
2622 4977 1.889105 CGATCAAGATGGTGCCCCG 60.889 63.158 0.00 0.00 0.00 5.73
2623 4978 2.189499 GCGATCAAGATGGTGCCCC 61.189 63.158 0.00 0.00 0.00 5.80
2624 4979 1.031571 TTGCGATCAAGATGGTGCCC 61.032 55.000 0.00 0.00 0.00 5.36
2625 4980 1.027357 ATTGCGATCAAGATGGTGCC 58.973 50.000 0.00 0.00 35.37 5.01
2626 4981 1.862815 GCATTGCGATCAAGATGGTGC 60.863 52.381 0.00 0.00 35.37 5.01
3174 5529 0.961019 TGAATTCCTGGTTGCACAGC 59.039 50.000 2.27 0.00 37.16 4.40
3369 5825 8.962679 CAACCTCAATATCCTCCTACTAGATAC 58.037 40.741 0.00 0.00 0.00 2.24
3370 5826 8.679725 ACAACCTCAATATCCTCCTACTAGATA 58.320 37.037 0.00 0.00 0.00 1.98
3371 5827 7.540183 ACAACCTCAATATCCTCCTACTAGAT 58.460 38.462 0.00 0.00 0.00 1.98
3417 5873 5.230942 ACTGCACAATCGCCTTATCTATAC 58.769 41.667 0.00 0.00 0.00 1.47
3418 5874 5.243954 AGACTGCACAATCGCCTTATCTATA 59.756 40.000 0.00 0.00 0.00 1.31
3421 5877 2.169352 AGACTGCACAATCGCCTTATCT 59.831 45.455 0.00 0.00 0.00 1.98
3423 5879 2.283298 CAGACTGCACAATCGCCTTAT 58.717 47.619 0.00 0.00 0.00 1.73
3424 5880 1.725641 CAGACTGCACAATCGCCTTA 58.274 50.000 0.00 0.00 0.00 2.69
3425 5881 1.580845 GCAGACTGCACAATCGCCTT 61.581 55.000 22.62 0.00 44.26 4.35
3426 5882 2.037136 GCAGACTGCACAATCGCCT 61.037 57.895 22.62 0.00 44.26 5.52
3427 5883 2.482374 GCAGACTGCACAATCGCC 59.518 61.111 22.62 0.00 44.26 5.54
3436 5892 4.054671 GGTATAGATCAACTGCAGACTGC 58.945 47.826 23.35 20.86 45.29 4.40
3437 5893 4.100035 TGGGTATAGATCAACTGCAGACTG 59.900 45.833 23.35 16.84 0.00 3.51
3438 5894 4.290093 TGGGTATAGATCAACTGCAGACT 58.710 43.478 23.35 12.96 0.00 3.24
3440 5896 4.716784 AGTTGGGTATAGATCAACTGCAGA 59.283 41.667 23.35 0.00 46.17 4.26
3441 5897 5.028549 AGTTGGGTATAGATCAACTGCAG 57.971 43.478 13.48 13.48 46.17 4.41
3446 5902 6.726490 TGGTAGAGTTGGGTATAGATCAAC 57.274 41.667 0.00 0.00 40.52 3.18
3449 5905 6.295349 CCACATGGTAGAGTTGGGTATAGATC 60.295 46.154 0.00 0.00 0.00 2.75
3450 5906 5.544176 CCACATGGTAGAGTTGGGTATAGAT 59.456 44.000 0.00 0.00 0.00 1.98
3452 5908 5.215252 CCACATGGTAGAGTTGGGTATAG 57.785 47.826 0.00 0.00 0.00 1.31
3467 5923 5.772825 TTCTCTTTTCTGAAACCACATGG 57.227 39.130 1.58 0.00 42.17 3.66
3469 5925 6.736794 GCACATTCTCTTTTCTGAAACCACAT 60.737 38.462 1.58 0.00 0.00 3.21
3470 5926 5.450412 GCACATTCTCTTTTCTGAAACCACA 60.450 40.000 1.58 0.00 0.00 4.17
3471 5927 4.978580 GCACATTCTCTTTTCTGAAACCAC 59.021 41.667 1.58 0.00 0.00 4.16
3472 5928 4.644234 TGCACATTCTCTTTTCTGAAACCA 59.356 37.500 1.58 0.00 0.00 3.67
3473 5929 4.978580 GTGCACATTCTCTTTTCTGAAACC 59.021 41.667 13.17 0.00 0.00 3.27
3479 6184 4.090761 TCTGGTGCACATTCTCTTTTCT 57.909 40.909 20.43 0.00 0.00 2.52
3481 6186 4.401022 TCATCTGGTGCACATTCTCTTTT 58.599 39.130 20.43 0.00 0.00 2.27
3483 6188 3.708403 TCATCTGGTGCACATTCTCTT 57.292 42.857 20.43 0.00 0.00 2.85
3484 6189 3.708403 TTCATCTGGTGCACATTCTCT 57.292 42.857 20.43 0.00 0.00 3.10
3488 6193 2.030007 CCGTTTTCATCTGGTGCACATT 60.030 45.455 20.43 0.00 0.00 2.71
3489 6194 1.541147 CCGTTTTCATCTGGTGCACAT 59.459 47.619 20.43 0.00 0.00 3.21
3490 6195 0.950836 CCGTTTTCATCTGGTGCACA 59.049 50.000 20.43 3.92 0.00 4.57
3493 6198 1.200020 CCTTCCGTTTTCATCTGGTGC 59.800 52.381 0.00 0.00 0.00 5.01
3499 6204 4.261801 TCCTTCATCCTTCCGTTTTCATC 58.738 43.478 0.00 0.00 0.00 2.92
3502 6207 3.676093 ACTCCTTCATCCTTCCGTTTTC 58.324 45.455 0.00 0.00 0.00 2.29
3505 6210 2.353803 CGAACTCCTTCATCCTTCCGTT 60.354 50.000 0.00 0.00 0.00 4.44
3508 6213 1.555533 ACCGAACTCCTTCATCCTTCC 59.444 52.381 0.00 0.00 0.00 3.46
3509 6214 4.674281 ATACCGAACTCCTTCATCCTTC 57.326 45.455 0.00 0.00 0.00 3.46
3510 6215 6.326583 TGAATATACCGAACTCCTTCATCCTT 59.673 38.462 0.00 0.00 0.00 3.36
3512 6217 5.927115 GTGAATATACCGAACTCCTTCATCC 59.073 44.000 0.00 0.00 0.00 3.51
3513 6218 6.513180 TGTGAATATACCGAACTCCTTCATC 58.487 40.000 0.00 0.00 0.00 2.92
3514 6219 6.479972 TGTGAATATACCGAACTCCTTCAT 57.520 37.500 0.00 0.00 0.00 2.57
3515 6220 5.925506 TGTGAATATACCGAACTCCTTCA 57.074 39.130 0.00 0.00 0.00 3.02
3516 6221 5.696724 CCATGTGAATATACCGAACTCCTTC 59.303 44.000 0.00 0.00 0.00 3.46
3517 6222 5.365605 TCCATGTGAATATACCGAACTCCTT 59.634 40.000 0.00 0.00 0.00 3.36
3518 6223 4.899457 TCCATGTGAATATACCGAACTCCT 59.101 41.667 0.00 0.00 0.00 3.69
3519 6224 5.209818 TCCATGTGAATATACCGAACTCC 57.790 43.478 0.00 0.00 0.00 3.85
3520 6225 7.307989 CCATTTCCATGTGAATATACCGAACTC 60.308 40.741 0.00 0.00 31.67 3.01
3521 6226 6.486657 CCATTTCCATGTGAATATACCGAACT 59.513 38.462 0.00 0.00 31.67 3.01
3524 6229 6.181206 TCCATTTCCATGTGAATATACCGA 57.819 37.500 0.00 0.00 31.67 4.69
3525 6230 6.293955 GGTTCCATTTCCATGTGAATATACCG 60.294 42.308 0.00 0.00 31.67 4.02
3526 6231 6.293955 CGGTTCCATTTCCATGTGAATATACC 60.294 42.308 0.00 0.00 31.67 2.73
3527 6232 6.668323 CGGTTCCATTTCCATGTGAATATAC 58.332 40.000 0.00 0.00 31.67 1.47
3528 6233 5.240623 GCGGTTCCATTTCCATGTGAATATA 59.759 40.000 0.00 0.00 31.67 0.86
3529 6234 4.037923 GCGGTTCCATTTCCATGTGAATAT 59.962 41.667 0.00 0.00 31.67 1.28
3530 6235 3.380004 GCGGTTCCATTTCCATGTGAATA 59.620 43.478 0.00 0.00 31.67 1.75
3531 6236 2.166254 GCGGTTCCATTTCCATGTGAAT 59.834 45.455 0.00 0.00 31.67 2.57
3532 6237 1.543802 GCGGTTCCATTTCCATGTGAA 59.456 47.619 0.00 0.00 0.00 3.18
3533 6238 1.173043 GCGGTTCCATTTCCATGTGA 58.827 50.000 0.00 0.00 0.00 3.58
3534 6239 1.176527 AGCGGTTCCATTTCCATGTG 58.823 50.000 0.00 0.00 0.00 3.21
3535 6240 1.545582 CAAGCGGTTCCATTTCCATGT 59.454 47.619 0.00 0.00 0.00 3.21
3536 6241 1.818060 TCAAGCGGTTCCATTTCCATG 59.182 47.619 0.00 0.00 0.00 3.66
3537 6242 2.214376 TCAAGCGGTTCCATTTCCAT 57.786 45.000 0.00 0.00 0.00 3.41
3538 6243 2.214376 ATCAAGCGGTTCCATTTCCA 57.786 45.000 0.00 0.00 0.00 3.53
3539 6244 3.013921 TGTATCAAGCGGTTCCATTTCC 58.986 45.455 0.00 0.00 0.00 3.13
3540 6245 4.695217 TTGTATCAAGCGGTTCCATTTC 57.305 40.909 0.00 0.00 0.00 2.17
3541 6246 5.659440 ATTTGTATCAAGCGGTTCCATTT 57.341 34.783 0.00 0.00 0.00 2.32
3542 6247 5.659440 AATTTGTATCAAGCGGTTCCATT 57.341 34.783 0.00 0.00 0.00 3.16
3543 6248 5.659440 AAATTTGTATCAAGCGGTTCCAT 57.341 34.783 0.00 0.00 0.00 3.41
3544 6249 5.461032 AAAATTTGTATCAAGCGGTTCCA 57.539 34.783 0.00 0.00 0.00 3.53
3545 6250 6.383415 TGTAAAATTTGTATCAAGCGGTTCC 58.617 36.000 0.00 0.00 0.00 3.62
3546 6251 7.462724 GCATGTAAAATTTGTATCAAGCGGTTC 60.463 37.037 0.00 0.00 0.00 3.62
3547 6252 6.310224 GCATGTAAAATTTGTATCAAGCGGTT 59.690 34.615 0.00 0.00 0.00 4.44
3548 6253 5.804979 GCATGTAAAATTTGTATCAAGCGGT 59.195 36.000 0.00 0.00 0.00 5.68
3549 6254 5.231991 GGCATGTAAAATTTGTATCAAGCGG 59.768 40.000 0.00 0.00 0.00 5.52
3550 6255 5.052436 CGGCATGTAAAATTTGTATCAAGCG 60.052 40.000 0.00 0.00 0.00 4.68
3551 6256 5.804979 ACGGCATGTAAAATTTGTATCAAGC 59.195 36.000 0.00 0.00 0.00 4.01
3552 6257 7.250569 AGACGGCATGTAAAATTTGTATCAAG 58.749 34.615 0.00 0.00 0.00 3.02
3553 6258 7.151999 AGACGGCATGTAAAATTTGTATCAA 57.848 32.000 0.00 0.00 0.00 2.57
3554 6259 6.456315 CGAGACGGCATGTAAAATTTGTATCA 60.456 38.462 0.00 0.00 0.00 2.15
3555 6260 5.901884 CGAGACGGCATGTAAAATTTGTATC 59.098 40.000 0.00 0.00 0.00 2.24
3556 6261 5.353123 ACGAGACGGCATGTAAAATTTGTAT 59.647 36.000 0.00 0.00 0.00 2.29
3557 6262 4.691685 ACGAGACGGCATGTAAAATTTGTA 59.308 37.500 0.00 0.00 0.00 2.41
3558 6263 3.500680 ACGAGACGGCATGTAAAATTTGT 59.499 39.130 0.00 0.00 0.00 2.83
3559 6264 4.078363 ACGAGACGGCATGTAAAATTTG 57.922 40.909 0.00 0.00 0.00 2.32
3560 6265 5.172934 TCTACGAGACGGCATGTAAAATTT 58.827 37.500 0.00 0.00 0.00 1.82
3561 6266 4.751060 TCTACGAGACGGCATGTAAAATT 58.249 39.130 0.00 0.00 0.00 1.82
3562 6267 4.380841 TCTACGAGACGGCATGTAAAAT 57.619 40.909 0.00 0.00 0.00 1.82
3563 6268 3.853831 TCTACGAGACGGCATGTAAAA 57.146 42.857 0.00 0.00 0.00 1.52
3564 6269 5.503662 TTATCTACGAGACGGCATGTAAA 57.496 39.130 0.00 0.00 0.00 2.01
3565 6270 5.297527 TCTTTATCTACGAGACGGCATGTAA 59.702 40.000 0.00 0.00 0.00 2.41
3566 6271 4.818005 TCTTTATCTACGAGACGGCATGTA 59.182 41.667 0.00 0.00 0.00 2.29
3567 6272 3.630769 TCTTTATCTACGAGACGGCATGT 59.369 43.478 0.00 0.00 0.00 3.21
3568 6273 4.224715 TCTTTATCTACGAGACGGCATG 57.775 45.455 0.00 0.00 0.00 4.06
3569 6274 4.913335 TTCTTTATCTACGAGACGGCAT 57.087 40.909 0.00 0.00 0.00 4.40
3570 6275 4.707030 TTTCTTTATCTACGAGACGGCA 57.293 40.909 0.00 0.00 0.00 5.69
3571 6276 5.338365 TCTTTTCTTTATCTACGAGACGGC 58.662 41.667 0.00 0.00 0.00 5.68
3572 6277 7.988904 ATTCTTTTCTTTATCTACGAGACGG 57.011 36.000 0.00 0.00 0.00 4.79
3585 6290 9.799106 ACGATATGGGATCATATTCTTTTCTTT 57.201 29.630 0.00 0.00 44.20 2.52
3586 6291 9.799106 AACGATATGGGATCATATTCTTTTCTT 57.201 29.630 0.00 0.00 44.20 2.52
3587 6292 9.442047 GAACGATATGGGATCATATTCTTTTCT 57.558 33.333 0.00 0.00 44.20 2.52
3588 6293 9.219603 TGAACGATATGGGATCATATTCTTTTC 57.780 33.333 0.00 0.00 44.20 2.29
3589 6294 9.224267 CTGAACGATATGGGATCATATTCTTTT 57.776 33.333 0.00 0.00 44.20 2.27
3590 6295 7.826252 CCTGAACGATATGGGATCATATTCTTT 59.174 37.037 0.00 0.00 44.20 2.52
3591 6296 7.180946 TCCTGAACGATATGGGATCATATTCTT 59.819 37.037 0.00 0.00 44.20 2.52
3592 6297 6.669591 TCCTGAACGATATGGGATCATATTCT 59.330 38.462 0.00 0.00 44.20 2.40
3593 6298 6.878317 TCCTGAACGATATGGGATCATATTC 58.122 40.000 0.00 0.00 44.20 1.75
3594 6299 6.126940 CCTCCTGAACGATATGGGATCATATT 60.127 42.308 0.00 0.00 44.20 1.28
3595 6300 5.365025 CCTCCTGAACGATATGGGATCATAT 59.635 44.000 0.00 0.00 46.14 1.78
3596 6301 4.711846 CCTCCTGAACGATATGGGATCATA 59.288 45.833 0.00 0.00 39.85 2.15
3597 6302 3.517100 CCTCCTGAACGATATGGGATCAT 59.483 47.826 0.00 0.00 37.40 2.45
3598 6303 2.899900 CCTCCTGAACGATATGGGATCA 59.100 50.000 0.00 0.00 0.00 2.92
3599 6304 2.354203 GCCTCCTGAACGATATGGGATC 60.354 54.545 0.00 0.00 0.00 3.36
3600 6305 1.625818 GCCTCCTGAACGATATGGGAT 59.374 52.381 0.00 0.00 0.00 3.85
3601 6306 1.048601 GCCTCCTGAACGATATGGGA 58.951 55.000 0.00 0.00 0.00 4.37
3602 6307 0.758734 TGCCTCCTGAACGATATGGG 59.241 55.000 0.00 0.00 0.00 4.00
3603 6308 1.138859 TGTGCCTCCTGAACGATATGG 59.861 52.381 0.00 0.00 0.00 2.74
3604 6309 2.159043 AGTGTGCCTCCTGAACGATATG 60.159 50.000 0.00 0.00 0.00 1.78
3605 6310 2.101582 GAGTGTGCCTCCTGAACGATAT 59.898 50.000 0.00 0.00 33.79 1.63
3606 6311 1.476891 GAGTGTGCCTCCTGAACGATA 59.523 52.381 0.00 0.00 33.79 2.92
3607 6312 0.247736 GAGTGTGCCTCCTGAACGAT 59.752 55.000 0.00 0.00 33.79 3.73
3608 6313 0.827925 AGAGTGTGCCTCCTGAACGA 60.828 55.000 0.00 0.00 41.47 3.85
3609 6314 0.668706 CAGAGTGTGCCTCCTGAACG 60.669 60.000 0.00 0.00 41.47 3.95
3610 6315 0.394565 ACAGAGTGTGCCTCCTGAAC 59.605 55.000 0.00 0.00 41.47 3.18
3611 6316 2.009681 TACAGAGTGTGCCTCCTGAA 57.990 50.000 0.00 0.00 41.47 3.02
3612 6317 1.827344 CATACAGAGTGTGCCTCCTGA 59.173 52.381 0.00 0.00 41.47 3.86
3613 6318 1.741732 GCATACAGAGTGTGCCTCCTG 60.742 57.143 7.53 0.00 43.18 3.86
3614 6319 0.539051 GCATACAGAGTGTGCCTCCT 59.461 55.000 7.53 0.00 43.18 3.69
3615 6320 3.071580 GCATACAGAGTGTGCCTCC 57.928 57.895 7.53 0.00 43.18 4.30
3620 6325 6.426980 AATTATGTGTGCATACAGAGTGTG 57.573 37.500 21.23 0.00 37.31 3.82
3621 6326 5.586243 GGAATTATGTGTGCATACAGAGTGT 59.414 40.000 21.23 7.12 37.31 3.55
3622 6327 5.585844 TGGAATTATGTGTGCATACAGAGTG 59.414 40.000 21.23 0.00 37.31 3.51
3623 6328 5.586243 GTGGAATTATGTGTGCATACAGAGT 59.414 40.000 21.23 11.24 37.31 3.24
3624 6329 5.819379 AGTGGAATTATGTGTGCATACAGAG 59.181 40.000 21.23 0.00 37.31 3.35
3626 6331 7.442062 TCATAGTGGAATTATGTGTGCATACAG 59.558 37.037 21.23 3.67 37.72 2.74
3632 6337 5.237344 GTCCTCATAGTGGAATTATGTGTGC 59.763 44.000 0.00 0.00 37.72 4.57
3639 6344 4.890988 TCCTGGTCCTCATAGTGGAATTA 58.109 43.478 0.00 0.00 35.10 1.40
3642 6347 2.940514 TCCTGGTCCTCATAGTGGAA 57.059 50.000 0.00 0.00 35.10 3.53
3650 6355 2.748209 TCATACGATCCTGGTCCTCA 57.252 50.000 0.00 0.00 0.00 3.86
3651 6356 3.862642 GCAATCATACGATCCTGGTCCTC 60.863 52.174 0.00 0.00 0.00 3.71
3653 6358 2.224281 TGCAATCATACGATCCTGGTCC 60.224 50.000 0.00 0.00 0.00 4.46
3741 6449 4.287766 GACAGGGAAAGGTGTCAATAGT 57.712 45.455 0.00 0.00 42.31 2.12
3786 6494 1.006832 CATGTCGAATGTTCCGGTCC 58.993 55.000 0.00 0.00 0.00 4.46
3804 6512 1.820483 GCAATGGGCAGCAGGATATCA 60.820 52.381 4.83 0.00 43.97 2.15
3816 6524 0.737019 CAACCACGATTGCAATGGGC 60.737 55.000 23.12 6.48 45.13 5.36
3817 6525 0.887247 TCAACCACGATTGCAATGGG 59.113 50.000 23.12 19.32 37.86 4.00
3818 6526 2.945447 ATCAACCACGATTGCAATGG 57.055 45.000 18.59 18.62 39.57 3.16
3819 6527 5.233957 TCTTATCAACCACGATTGCAATG 57.766 39.130 18.59 11.63 0.00 2.82
3825 6533 5.747197 GTGTCGTATCTTATCAACCACGATT 59.253 40.000 0.00 0.00 40.12 3.34
3842 6550 6.610456 TGTGTTAGTATCAAATCGTGTCGTA 58.390 36.000 0.00 0.00 0.00 3.43
3971 6686 1.334160 TGTGTGATGTACGGGTGTCT 58.666 50.000 0.00 0.00 0.00 3.41
4262 6989 0.980231 GTCTGATCAGGCCTGGGTCT 60.980 60.000 32.23 14.73 0.00 3.85
4263 6990 1.524482 GTCTGATCAGGCCTGGGTC 59.476 63.158 32.23 27.40 0.00 4.46
4264 6991 3.732938 GTCTGATCAGGCCTGGGT 58.267 61.111 32.23 21.10 0.00 4.51
4270 6997 0.259938 AATTGGGGGTCTGATCAGGC 59.740 55.000 22.42 20.93 0.00 4.85
4271 6998 1.475751 CGAATTGGGGGTCTGATCAGG 60.476 57.143 22.42 4.43 0.00 3.86
4272 6999 1.486310 TCGAATTGGGGGTCTGATCAG 59.514 52.381 17.07 17.07 0.00 2.90
4273 7000 1.209504 GTCGAATTGGGGGTCTGATCA 59.790 52.381 0.00 0.00 0.00 2.92
4274 7001 1.806623 CGTCGAATTGGGGGTCTGATC 60.807 57.143 0.00 0.00 0.00 2.92
4275 7002 0.178068 CGTCGAATTGGGGGTCTGAT 59.822 55.000 0.00 0.00 0.00 2.90
4276 7003 1.189524 ACGTCGAATTGGGGGTCTGA 61.190 55.000 0.00 0.00 0.00 3.27
4277 7004 1.019278 CACGTCGAATTGGGGGTCTG 61.019 60.000 0.00 0.00 0.00 3.51
4525 7280 4.701956 ACTTGAATTAGAATTGCACGGG 57.298 40.909 0.00 0.00 0.00 5.28
4622 7379 5.505181 TTCCATAAACTGAGCTTCTCCTT 57.495 39.130 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.