Multiple sequence alignment - TraesCS5D01G270300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G270300 chr5D 100.000 3612 0 0 1 3612 373950163 373953774 0.000000e+00 6671.0
1 TraesCS5D01G270300 chr5D 86.735 294 34 4 3319 3609 360752077 360752368 4.500000e-84 322.0
2 TraesCS5D01G270300 chr5D 95.758 165 7 0 2774 2938 498721907 498722071 2.140000e-67 267.0
3 TraesCS5D01G270300 chr5D 90.244 205 10 5 2771 2966 74461925 74461722 3.580000e-65 259.0
4 TraesCS5D01G270300 chr5D 94.915 59 3 0 1264 1322 547926052 547925994 3.840000e-15 93.5
5 TraesCS5D01G270300 chr5D 92.857 56 4 0 1264 1319 547840952 547840897 8.310000e-12 82.4
6 TraesCS5D01G270300 chr5D 90.476 42 2 2 2939 2980 530599658 530599697 2.000000e-03 54.7
7 TraesCS5D01G270300 chr5B 93.908 1264 44 13 1531 2775 445594338 445595587 0.000000e+00 1877.0
8 TraesCS5D01G270300 chr5B 90.583 1200 73 26 143 1327 445593046 445594220 0.000000e+00 1554.0
9 TraesCS5D01G270300 chr5B 85.895 553 64 10 2980 3524 445595650 445596196 8.700000e-161 577.0
10 TraesCS5D01G270300 chr5B 85.855 304 39 4 3311 3612 660343559 660343860 1.620000e-83 320.0
11 TraesCS5D01G270300 chr5B 82.209 163 12 5 1 150 445592620 445592778 1.360000e-24 124.0
12 TraesCS5D01G270300 chr5B 95.238 63 3 0 1264 1326 691798219 691798157 2.290000e-17 100.0
13 TraesCS5D01G270300 chr5B 93.220 59 4 0 1264 1322 691825096 691825038 1.790000e-13 87.9
14 TraesCS5D01G270300 chr5B 96.078 51 1 1 1405 1455 676857422 676857373 8.310000e-12 82.4
15 TraesCS5D01G270300 chr5B 97.826 46 1 0 1405 1450 676705652 676705607 2.990000e-11 80.5
16 TraesCS5D01G270300 chr5A 90.923 1267 57 30 1539 2779 475750171 475751405 0.000000e+00 1650.0
17 TraesCS5D01G270300 chr5A 87.592 814 55 26 1 786 475748173 475748968 0.000000e+00 902.0
18 TraesCS5D01G270300 chr5A 81.139 790 82 38 785 1545 475749399 475750150 4.050000e-159 571.0
19 TraesCS5D01G270300 chr5A 84.866 337 42 7 2987 3320 475752254 475752584 7.480000e-87 331.0
20 TraesCS5D01G270300 chr5A 86.395 294 36 3 3319 3609 461523742 461524034 5.820000e-83 318.0
21 TraesCS5D01G270300 chr5A 95.652 46 2 0 1405 1450 183026530 183026485 1.390000e-09 75.0
22 TraesCS5D01G270300 chr5A 96.970 33 0 1 2935 2966 547789167 547789135 2.000000e-03 54.7
23 TraesCS5D01G270300 chr5A 100.000 28 0 0 2939 2966 135063035 135063062 7.000000e-03 52.8
24 TraesCS5D01G270300 chr7D 87.500 296 34 3 3319 3612 623691721 623691427 4.470000e-89 339.0
25 TraesCS5D01G270300 chr7D 86.207 232 26 4 2980 3205 288465229 288465460 2.790000e-61 246.0
26 TraesCS5D01G270300 chr7D 83.333 132 19 2 3063 3194 582034173 582034045 6.340000e-23 119.0
27 TraesCS5D01G270300 chr4D 86.288 299 36 4 3317 3612 67272700 67272996 1.620000e-83 320.0
28 TraesCS5D01G270300 chr4D 86.047 301 34 6 3317 3612 459064506 459064803 2.090000e-82 316.0
29 TraesCS5D01G270300 chr4D 95.238 168 7 1 2770 2936 470150101 470149934 7.690000e-67 265.0
30 TraesCS5D01G270300 chr4D 95.556 45 2 0 1405 1449 258659560 258659516 5.000000e-09 73.1
31 TraesCS5D01G270300 chr4D 100.000 29 0 0 2938 2966 282517483 282517455 2.000000e-03 54.7
32 TraesCS5D01G270300 chr6D 85.809 303 39 3 3313 3612 287031182 287031483 5.820000e-83 318.0
33 TraesCS5D01G270300 chr6D 95.181 166 8 0 2774 2939 90890282 90890447 2.770000e-66 263.0
34 TraesCS5D01G270300 chr4B 85.294 306 39 5 3309 3612 483507517 483507818 9.740000e-81 311.0
35 TraesCS5D01G270300 chr4B 93.478 46 3 0 1405 1450 581488291 581488246 6.470000e-08 69.4
36 TraesCS5D01G270300 chr4B 100.000 30 0 0 2938 2967 5552755 5552726 5.040000e-04 56.5
37 TraesCS5D01G270300 chr4B 100.000 29 0 0 2938 2966 586319054 586319082 2.000000e-03 54.7
38 TraesCS5D01G270300 chr4B 100.000 28 0 0 1405 1432 153309221 153309248 7.000000e-03 52.8
39 TraesCS5D01G270300 chr1D 95.882 170 7 0 2768 2937 126223336 126223505 3.550000e-70 276.0
40 TraesCS5D01G270300 chr1D 96.386 166 6 0 2772 2937 160451493 160451658 1.280000e-69 274.0
41 TraesCS5D01G270300 chr1D 96.364 165 6 0 2772 2936 9764051 9764215 4.600000e-69 272.0
42 TraesCS5D01G270300 chr1D 84.549 233 31 3 2978 3206 240611204 240611435 3.630000e-55 226.0
43 TraesCS5D01G270300 chr1D 100.000 29 0 0 2939 2967 216825251 216825223 2.000000e-03 54.7
44 TraesCS5D01G270300 chr7B 94.643 168 9 0 2774 2941 488408077 488407910 9.950000e-66 261.0
45 TraesCS5D01G270300 chr7B 93.678 174 9 2 2772 2943 516791927 516791754 3.580000e-65 259.0
46 TraesCS5D01G270300 chr7B 84.066 182 24 2 3029 3205 363237749 363237568 1.720000e-38 171.0
47 TraesCS5D01G270300 chr7B 97.619 42 1 0 1405 1446 43863569 43863610 5.000000e-09 73.1
48 TraesCS5D01G270300 chr7B 95.556 45 2 0 1405 1449 749144939 749144983 5.000000e-09 73.1
49 TraesCS5D01G270300 chr6A 85.106 235 30 4 2979 3209 52397744 52397977 6.030000e-58 235.0
50 TraesCS5D01G270300 chr6A 95.652 46 2 0 1405 1450 162857868 162857823 1.390000e-09 75.0
51 TraesCS5D01G270300 chr6A 95.652 46 2 0 1405 1450 367715956 367715911 1.390000e-09 75.0
52 TraesCS5D01G270300 chr1B 84.255 235 31 4 2977 3206 333599891 333599658 1.310000e-54 224.0
53 TraesCS5D01G270300 chr1B 97.826 46 1 0 1405 1450 13440952 13440907 2.990000e-11 80.5
54 TraesCS5D01G270300 chr1B 95.833 48 2 0 1403 1450 663373348 663373301 1.080000e-10 78.7
55 TraesCS5D01G270300 chr4A 91.429 70 5 1 1255 1324 618529548 618529480 1.070000e-15 95.3
56 TraesCS5D01G270300 chr4A 90.476 63 6 0 1264 1326 618418788 618418726 2.310000e-12 84.2
57 TraesCS5D01G270300 chr4A 95.652 46 2 0 1405 1450 677402103 677402148 1.390000e-09 75.0
58 TraesCS5D01G270300 chr4A 100.000 29 0 0 2938 2966 702151162 702151190 2.000000e-03 54.7
59 TraesCS5D01G270300 chr3B 96.078 51 1 1 1405 1455 55470750 55470701 8.310000e-12 82.4
60 TraesCS5D01G270300 chr3B 97.778 45 1 0 1405 1449 705444373 705444329 1.080000e-10 78.7
61 TraesCS5D01G270300 chr6B 97.826 46 1 0 1405 1450 2726923 2726968 2.990000e-11 80.5
62 TraesCS5D01G270300 chr2A 97.778 45 1 0 1405 1449 704626224 704626180 1.080000e-10 78.7
63 TraesCS5D01G270300 chr2A 100.000 29 0 0 2939 2967 245943089 245943061 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G270300 chr5D 373950163 373953774 3611 False 6671.0 6671 100.00000 1 3612 1 chr5D.!!$F2 3611
1 TraesCS5D01G270300 chr5B 445592620 445596196 3576 False 1033.0 1877 88.14875 1 3524 4 chr5B.!!$F2 3523
2 TraesCS5D01G270300 chr5A 475748173 475752584 4411 False 863.5 1650 86.13000 1 3320 4 chr5A.!!$F3 3319

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
822 1570 0.52218 GAACTGTCGCTCTCCTTCGA 59.478 55.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2818 3683 0.104855 TGCTCCGTATGCAGTCCATC 59.895 55.0 0.0 0.0 35.31 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.569548 CGATGGATGAGTCGGATAGTTG 58.430 50.000 0.00 0.00 34.39 3.16
33 34 1.012086 TCGGATAGTTGGAGACGTCG 58.988 55.000 10.46 0.00 0.00 5.12
34 35 1.012086 CGGATAGTTGGAGACGTCGA 58.988 55.000 10.46 0.00 0.00 4.20
35 36 1.399440 CGGATAGTTGGAGACGTCGAA 59.601 52.381 10.46 1.64 0.00 3.71
37 38 2.223525 GGATAGTTGGAGACGTCGAAGG 60.224 54.545 10.46 0.00 0.00 3.46
362 661 0.534412 ACTCAAGAGCCGTGGATGAG 59.466 55.000 0.00 0.00 42.43 2.90
409 721 4.249661 GTGGCTTTGAAGAACAAAAACCA 58.750 39.130 0.00 0.00 45.97 3.67
443 755 4.676586 CGCACGGCCGTTGGTTTC 62.677 66.667 32.11 12.33 0.00 2.78
459 771 1.336755 GTTTCCACGTCAAGGCAACAT 59.663 47.619 1.90 0.00 33.33 2.71
557 870 3.113979 CGACGGCCGGTAAACCAC 61.114 66.667 31.76 8.72 35.14 4.16
793 1540 2.028130 CGCCACACCTTAGAGAGAGAT 58.972 52.381 0.00 0.00 0.00 2.75
795 1542 3.823873 CGCCACACCTTAGAGAGAGATAT 59.176 47.826 0.00 0.00 0.00 1.63
822 1570 0.522180 GAACTGTCGCTCTCCTTCGA 59.478 55.000 0.00 0.00 0.00 3.71
827 1575 3.839432 CGCTCTCCTTCGACCCCC 61.839 72.222 0.00 0.00 0.00 5.40
829 1577 2.362632 CTCTCCTTCGACCCCCGT 60.363 66.667 0.00 0.00 39.75 5.28
830 1578 1.077212 CTCTCCTTCGACCCCCGTA 60.077 63.158 0.00 0.00 39.75 4.02
831 1579 1.379044 TCTCCTTCGACCCCCGTAC 60.379 63.158 0.00 0.00 39.75 3.67
833 1581 3.464494 CCTTCGACCCCCGTACCC 61.464 72.222 0.00 0.00 39.75 3.69
834 1582 3.830192 CTTCGACCCCCGTACCCG 61.830 72.222 0.00 0.00 39.75 5.28
931 1684 5.560375 CGTCGTAGTACTTCCATATCCACAG 60.560 48.000 0.00 0.00 0.00 3.66
932 1685 4.277672 TCGTAGTACTTCCATATCCACAGC 59.722 45.833 0.00 0.00 0.00 4.40
937 1690 3.051581 ACTTCCATATCCACAGCTCCAT 58.948 45.455 0.00 0.00 0.00 3.41
981 1744 2.360852 CTCTGCCTTGCCTGGTGG 60.361 66.667 0.00 0.00 0.00 4.61
982 1745 3.177884 TCTGCCTTGCCTGGTGGT 61.178 61.111 0.00 0.00 35.27 4.16
983 1746 1.841302 CTCTGCCTTGCCTGGTGGTA 61.841 60.000 0.00 0.00 35.27 3.25
984 1747 1.207488 TCTGCCTTGCCTGGTGGTAT 61.207 55.000 0.00 0.00 35.27 2.73
985 1748 0.749454 CTGCCTTGCCTGGTGGTATC 60.749 60.000 0.00 0.00 35.27 2.24
986 1749 1.207488 TGCCTTGCCTGGTGGTATCT 61.207 55.000 0.00 0.00 35.27 1.98
987 1750 0.837272 GCCTTGCCTGGTGGTATCTA 59.163 55.000 0.00 0.00 35.27 1.98
988 1751 1.202698 GCCTTGCCTGGTGGTATCTAG 60.203 57.143 0.00 0.00 35.27 2.43
1010 1773 3.678806 GCTATGTCGACAATGGAGGTGAA 60.679 47.826 24.13 0.00 0.00 3.18
1226 1992 5.273944 GTCGTTAATGGATTCATTCCTTGC 58.726 41.667 1.37 0.00 45.68 4.01
1236 2002 1.824230 TCATTCCTTGCCCGAATTTGG 59.176 47.619 4.52 4.52 0.00 3.28
1277 2043 4.171103 GGGTTCCCCGACCATCCG 62.171 72.222 0.00 0.00 41.65 4.18
1329 2099 0.304705 CGAGGTACGCATGCATTTCC 59.695 55.000 19.57 13.52 34.51 3.13
1335 2105 1.153978 CGCATGCATTTCCGTTGCT 60.154 52.632 19.57 0.00 40.77 3.91
1396 2169 6.472887 AGTAGCACTAGAAAACTGCCAAATA 58.527 36.000 0.00 0.00 0.00 1.40
1405 2178 5.775195 AGAAAACTGCCAAATAAACCTAGCT 59.225 36.000 0.00 0.00 0.00 3.32
1406 2179 6.946009 AGAAAACTGCCAAATAAACCTAGCTA 59.054 34.615 0.00 0.00 0.00 3.32
1407 2180 6.759497 AAACTGCCAAATAAACCTAGCTAG 57.241 37.500 14.20 14.20 0.00 3.42
1408 2181 4.200092 ACTGCCAAATAAACCTAGCTAGC 58.800 43.478 15.74 6.62 0.00 3.42
1409 2182 4.199310 CTGCCAAATAAACCTAGCTAGCA 58.801 43.478 18.83 6.05 0.00 3.49
1411 2184 3.003793 GCCAAATAAACCTAGCTAGCAGC 59.996 47.826 18.83 0.00 42.84 5.25
1413 2186 4.823989 CCAAATAAACCTAGCTAGCAGCAT 59.176 41.667 18.83 0.00 45.56 3.79
1414 2187 5.049129 CCAAATAAACCTAGCTAGCAGCATC 60.049 44.000 18.83 0.00 45.56 3.91
1415 2188 4.963318 ATAAACCTAGCTAGCAGCATCA 57.037 40.909 18.83 0.00 45.56 3.07
1416 2189 3.634397 AAACCTAGCTAGCAGCATCAA 57.366 42.857 18.83 0.00 45.56 2.57
1417 2190 3.634397 AACCTAGCTAGCAGCATCAAA 57.366 42.857 18.83 0.00 45.56 2.69
1419 2192 2.503356 ACCTAGCTAGCAGCATCAAAGT 59.497 45.455 18.83 0.81 45.56 2.66
1420 2193 3.129871 CCTAGCTAGCAGCATCAAAGTC 58.870 50.000 18.83 0.00 45.56 3.01
1421 2194 2.035530 AGCTAGCAGCATCAAAGTCC 57.964 50.000 18.83 0.00 45.56 3.85
1424 2197 2.679059 GCTAGCAGCATCAAAGTCCAGA 60.679 50.000 10.63 0.00 41.89 3.86
1426 2199 3.083122 AGCAGCATCAAAGTCCAGAAT 57.917 42.857 0.00 0.00 0.00 2.40
1427 2200 4.226427 AGCAGCATCAAAGTCCAGAATA 57.774 40.909 0.00 0.00 0.00 1.75
1428 2201 4.789807 AGCAGCATCAAAGTCCAGAATAT 58.210 39.130 0.00 0.00 0.00 1.28
1429 2202 4.820716 AGCAGCATCAAAGTCCAGAATATC 59.179 41.667 0.00 0.00 0.00 1.63
1437 2210 4.927267 AAGTCCAGAATATCCACACCAA 57.073 40.909 0.00 0.00 0.00 3.67
1458 2231 6.638610 CCAAAATACATTGGCAATACTTCCA 58.361 36.000 13.23 0.00 43.11 3.53
1474 2270 1.448985 TCCAATTGAGCTGTAACGGC 58.551 50.000 7.12 0.00 35.73 5.68
1475 2271 0.096976 CCAATTGAGCTGTAACGGCG 59.903 55.000 7.12 4.80 41.21 6.46
1482 2278 3.118454 CTGTAACGGCGGTGGCAG 61.118 66.667 8.19 12.48 42.47 4.85
1521 2317 3.656045 CGGGGAACAAGCGCGTTT 61.656 61.111 8.43 4.71 0.00 3.60
1523 2319 2.548295 GGGGAACAAGCGCGTTTCA 61.548 57.895 4.81 0.00 0.00 2.69
1646 2470 1.048160 CAACCACCCCCTGTGCTTTT 61.048 55.000 0.00 0.00 44.01 2.27
1668 2492 5.437289 TGTGCAATGAGAACGAAATCTTT 57.563 34.783 0.00 0.00 0.00 2.52
1671 2495 5.340667 GTGCAATGAGAACGAAATCTTTGTC 59.659 40.000 0.00 0.00 34.66 3.18
1747 2574 2.525248 AACGATGGCGCGCATACAG 61.525 57.895 34.42 20.91 42.48 2.74
1771 2598 2.200373 AGATTTGTTGGCTAACCGCT 57.800 45.000 10.73 0.00 39.70 5.52
2000 2828 6.176975 TGTGAGCATTTATTAACTTCACCG 57.823 37.500 0.00 0.00 0.00 4.94
2070 2898 1.011968 TCCATGACTAACACGTGCGC 61.012 55.000 17.22 0.00 0.00 6.09
2437 3286 2.504244 CTCCGGTTCGTGCTCGTC 60.504 66.667 8.17 3.19 38.33 4.20
2527 3376 2.241880 CGCCACCGTCAACGACTTT 61.242 57.895 3.71 0.00 43.02 2.66
2542 3391 6.929049 TCAACGACTTTGAGTACTTCATCAAT 59.071 34.615 0.00 0.00 39.45 2.57
2617 3466 4.780275 AGAGTACGTAGGGTGAAAGAAC 57.220 45.455 0.00 0.00 0.00 3.01
2619 3468 1.988467 GTACGTAGGGTGAAAGAACGC 59.012 52.381 0.00 0.00 37.07 4.84
2620 3469 0.665369 ACGTAGGGTGAAAGAACGCG 60.665 55.000 3.53 3.53 38.01 6.01
2621 3470 1.349259 CGTAGGGTGAAAGAACGCGG 61.349 60.000 12.47 0.00 38.01 6.46
2622 3471 0.320160 GTAGGGTGAAAGAACGCGGT 60.320 55.000 12.47 1.91 38.01 5.68
2624 3473 1.595929 GGGTGAAAGAACGCGGTGA 60.596 57.895 12.47 0.00 0.00 4.02
2627 3476 0.384353 GTGAAAGAACGCGGTGAAGC 60.384 55.000 12.47 0.00 0.00 3.86
2628 3477 1.206831 GAAAGAACGCGGTGAAGCC 59.793 57.895 12.47 0.00 0.00 4.35
2629 3478 1.227853 AAAGAACGCGGTGAAGCCT 60.228 52.632 12.47 0.00 34.25 4.58
2630 3479 1.507141 AAAGAACGCGGTGAAGCCTG 61.507 55.000 12.47 0.00 34.25 4.85
2779 3644 9.551734 AAAAACAGTATACCGAATTATACTCCC 57.448 33.333 0.00 0.00 41.44 4.30
2780 3645 8.488308 AAACAGTATACCGAATTATACTCCCT 57.512 34.615 0.00 0.00 41.44 4.20
2781 3646 7.700022 ACAGTATACCGAATTATACTCCCTC 57.300 40.000 0.00 0.00 41.44 4.30
2782 3647 7.236529 ACAGTATACCGAATTATACTCCCTCA 58.763 38.462 0.00 0.00 41.44 3.86
2783 3648 7.393796 ACAGTATACCGAATTATACTCCCTCAG 59.606 40.741 0.00 1.82 41.44 3.35
2784 3649 7.393796 CAGTATACCGAATTATACTCCCTCAGT 59.606 40.741 0.00 0.00 41.44 3.41
2785 3650 7.949006 AGTATACCGAATTATACTCCCTCAGTT 59.051 37.037 0.00 0.00 39.96 3.16
2786 3651 5.532664 ACCGAATTATACTCCCTCAGTTC 57.467 43.478 0.00 0.00 36.43 3.01
2787 3652 4.344390 ACCGAATTATACTCCCTCAGTTCC 59.656 45.833 0.00 0.00 36.43 3.62
2788 3653 4.589374 CCGAATTATACTCCCTCAGTTCCT 59.411 45.833 0.00 0.00 36.43 3.36
2789 3654 5.773680 CCGAATTATACTCCCTCAGTTCCTA 59.226 44.000 0.00 0.00 36.43 2.94
2790 3655 6.267014 CCGAATTATACTCCCTCAGTTCCTAA 59.733 42.308 0.00 0.00 36.43 2.69
2791 3656 7.201974 CCGAATTATACTCCCTCAGTTCCTAAA 60.202 40.741 0.00 0.00 36.43 1.85
2792 3657 8.368668 CGAATTATACTCCCTCAGTTCCTAAAT 58.631 37.037 0.00 0.00 36.43 1.40
2798 3663 9.900112 ATACTCCCTCAGTTCCTAAATATAAGT 57.100 33.333 0.00 0.00 36.43 2.24
2799 3664 8.252624 ACTCCCTCAGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 26.56 3.01
2800 3665 8.068733 ACTCCCTCAGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 26.56 3.24
2801 3666 8.855804 TCCCTCAGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
2802 3667 9.280456 TCCCTCAGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
2803 3668 9.331282 CCCTCAGTTCCTAAATATAAGTCTTTG 57.669 37.037 0.00 0.00 0.00 2.77
2804 3669 9.892130 CCTCAGTTCCTAAATATAAGTCTTTGT 57.108 33.333 0.00 0.00 0.00 2.83
2819 3684 9.702253 ATAAGTCTTTGTAGAGATTCCACTAGA 57.298 33.333 0.00 0.00 0.00 2.43
2820 3685 8.602472 AAGTCTTTGTAGAGATTCCACTAGAT 57.398 34.615 0.00 0.00 0.00 1.98
2821 3686 8.006298 AGTCTTTGTAGAGATTCCACTAGATG 57.994 38.462 0.00 0.00 0.00 2.90
2833 3698 3.018598 CACTAGATGGACTGCATACGG 57.981 52.381 0.00 0.00 0.00 4.02
2834 3699 2.623416 CACTAGATGGACTGCATACGGA 59.377 50.000 0.00 0.00 0.00 4.69
2835 3700 2.887783 ACTAGATGGACTGCATACGGAG 59.112 50.000 0.00 0.00 36.48 4.63
2836 3701 0.390860 AGATGGACTGCATACGGAGC 59.609 55.000 0.00 0.00 32.91 4.70
2837 3702 0.104855 GATGGACTGCATACGGAGCA 59.895 55.000 0.00 0.00 40.19 4.26
2838 3703 0.541392 ATGGACTGCATACGGAGCAA 59.459 50.000 0.00 0.00 42.17 3.91
2839 3704 0.323302 TGGACTGCATACGGAGCAAA 59.677 50.000 0.00 0.00 42.17 3.68
2840 3705 1.271108 TGGACTGCATACGGAGCAAAA 60.271 47.619 0.00 0.00 42.17 2.44
2841 3706 1.130561 GGACTGCATACGGAGCAAAAC 59.869 52.381 0.00 0.00 42.17 2.43
2842 3707 0.796312 ACTGCATACGGAGCAAAACG 59.204 50.000 0.00 0.00 42.17 3.60
2843 3708 0.096976 CTGCATACGGAGCAAAACGG 59.903 55.000 0.00 0.00 42.17 4.44
2844 3709 0.320858 TGCATACGGAGCAAAACGGA 60.321 50.000 0.00 0.00 39.39 4.69
2845 3710 1.014352 GCATACGGAGCAAAACGGAT 58.986 50.000 0.00 0.00 33.05 4.18
2846 3711 2.737467 CATACGGAGCAAAACGGATG 57.263 50.000 0.00 0.00 43.96 3.51
2847 3712 2.684001 ATACGGAGCAAAACGGATGA 57.316 45.000 0.00 0.00 31.33 2.92
2848 3713 2.459060 TACGGAGCAAAACGGATGAA 57.541 45.000 0.00 0.00 0.00 2.57
2849 3714 1.821216 ACGGAGCAAAACGGATGAAT 58.179 45.000 0.00 0.00 0.00 2.57
2850 3715 1.737793 ACGGAGCAAAACGGATGAATC 59.262 47.619 0.00 0.00 0.00 2.52
2851 3716 2.009774 CGGAGCAAAACGGATGAATCT 58.990 47.619 0.00 0.00 0.00 2.40
2852 3717 3.194861 CGGAGCAAAACGGATGAATCTA 58.805 45.455 0.00 0.00 0.00 1.98
2853 3718 3.001330 CGGAGCAAAACGGATGAATCTAC 59.999 47.826 0.00 0.00 0.00 2.59
2854 3719 3.938963 GGAGCAAAACGGATGAATCTACA 59.061 43.478 0.00 0.00 0.00 2.74
2855 3720 4.201822 GGAGCAAAACGGATGAATCTACAC 60.202 45.833 0.00 0.00 0.00 2.90
2856 3721 4.579869 AGCAAAACGGATGAATCTACACT 58.420 39.130 0.00 0.00 0.00 3.55
2857 3722 5.003804 AGCAAAACGGATGAATCTACACTT 58.996 37.500 0.00 0.00 0.00 3.16
2858 3723 6.170506 AGCAAAACGGATGAATCTACACTTA 58.829 36.000 0.00 0.00 0.00 2.24
2859 3724 6.653320 AGCAAAACGGATGAATCTACACTTAA 59.347 34.615 0.00 0.00 0.00 1.85
2860 3725 7.174253 AGCAAAACGGATGAATCTACACTTAAA 59.826 33.333 0.00 0.00 0.00 1.52
2861 3726 7.806014 GCAAAACGGATGAATCTACACTTAAAA 59.194 33.333 0.00 0.00 0.00 1.52
2862 3727 9.840427 CAAAACGGATGAATCTACACTTAAAAT 57.160 29.630 0.00 0.00 0.00 1.82
2863 3728 9.840427 AAAACGGATGAATCTACACTTAAAATG 57.160 29.630 0.00 0.00 0.00 2.32
2864 3729 7.016361 ACGGATGAATCTACACTTAAAATGC 57.984 36.000 0.00 0.00 0.00 3.56
2865 3730 6.597672 ACGGATGAATCTACACTTAAAATGCA 59.402 34.615 0.00 0.00 0.00 3.96
2866 3731 7.283127 ACGGATGAATCTACACTTAAAATGCAT 59.717 33.333 0.00 0.00 0.00 3.96
2867 3732 7.800380 CGGATGAATCTACACTTAAAATGCATC 59.200 37.037 0.00 0.00 0.00 3.91
2868 3733 8.844244 GGATGAATCTACACTTAAAATGCATCT 58.156 33.333 0.00 0.00 0.00 2.90
2880 3745 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
2885 3750 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
2886 3751 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
2887 3752 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
2888 3753 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
2889 3754 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
2890 3755 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
2891 3756 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
2892 3757 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
2893 3758 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
2894 3759 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
2895 3760 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
2896 3761 4.161565 ACATCCGTATGTGGTTCATAGTGT 59.838 41.667 0.00 0.00 44.79 3.55
2897 3762 5.361571 ACATCCGTATGTGGTTCATAGTGTA 59.638 40.000 0.00 0.00 44.79 2.90
2898 3763 5.918426 TCCGTATGTGGTTCATAGTGTAA 57.082 39.130 0.00 0.00 39.36 2.41
2899 3764 6.474140 TCCGTATGTGGTTCATAGTGTAAT 57.526 37.500 0.00 0.00 39.36 1.89
2900 3765 6.509656 TCCGTATGTGGTTCATAGTGTAATC 58.490 40.000 0.00 0.00 39.36 1.75
2901 3766 6.322969 TCCGTATGTGGTTCATAGTGTAATCT 59.677 38.462 0.00 0.00 39.36 2.40
2902 3767 6.641314 CCGTATGTGGTTCATAGTGTAATCTC 59.359 42.308 0.00 0.00 39.36 2.75
2903 3768 7.426410 CGTATGTGGTTCATAGTGTAATCTCT 58.574 38.462 0.00 0.00 39.36 3.10
2904 3769 8.565416 CGTATGTGGTTCATAGTGTAATCTCTA 58.435 37.037 0.00 0.00 39.36 2.43
2905 3770 9.680315 GTATGTGGTTCATAGTGTAATCTCTAC 57.320 37.037 0.00 0.00 39.36 2.59
2906 3771 7.712204 TGTGGTTCATAGTGTAATCTCTACA 57.288 36.000 0.00 0.00 0.00 2.74
2907 3772 8.129496 TGTGGTTCATAGTGTAATCTCTACAA 57.871 34.615 0.00 0.00 0.00 2.41
2908 3773 8.590204 TGTGGTTCATAGTGTAATCTCTACAAA 58.410 33.333 0.00 0.00 0.00 2.83
2909 3774 9.088512 GTGGTTCATAGTGTAATCTCTACAAAG 57.911 37.037 0.00 0.00 0.00 2.77
2910 3775 9.031537 TGGTTCATAGTGTAATCTCTACAAAGA 57.968 33.333 0.00 0.00 0.00 2.52
2911 3776 9.303537 GGTTCATAGTGTAATCTCTACAAAGAC 57.696 37.037 0.00 0.00 0.00 3.01
2929 3794 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2930 3795 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2931 3796 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2932 3797 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2933 3798 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2934 3799 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2935 3800 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2936 3801 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
2971 4652 2.167075 CCTCCGTTCCTAAATACCACGT 59.833 50.000 0.00 0.00 0.00 4.49
2974 4655 5.452356 CCTCCGTTCCTAAATACCACGTATT 60.452 44.000 0.00 0.00 39.98 1.89
2976 4657 5.360714 TCCGTTCCTAAATACCACGTATTCT 59.639 40.000 0.00 0.00 37.69 2.40
2978 4659 6.536224 CCGTTCCTAAATACCACGTATTCTTT 59.464 38.462 0.00 0.00 37.69 2.52
3027 4728 2.525368 TGGATGGATCGTATGTCGGAT 58.475 47.619 0.00 0.00 40.32 4.18
3028 4729 2.492088 TGGATGGATCGTATGTCGGATC 59.508 50.000 0.00 0.00 40.32 3.36
3053 4754 0.813184 TCCTTCGTCACGGATACCAC 59.187 55.000 0.00 0.00 0.00 4.16
3054 4755 0.528924 CCTTCGTCACGGATACCACA 59.471 55.000 0.00 0.00 0.00 4.17
3055 4756 1.136305 CCTTCGTCACGGATACCACAT 59.864 52.381 0.00 0.00 0.00 3.21
3061 4762 0.107703 CACGGATACCACATGCACCT 60.108 55.000 0.00 0.00 0.00 4.00
3067 4768 3.073062 GGATACCACATGCACCTATTCCT 59.927 47.826 0.00 0.00 0.00 3.36
3121 4822 6.775629 GCACCCAGGTTTGATATCCTAAAATA 59.224 38.462 0.00 0.00 32.26 1.40
3126 4827 9.799106 CCAGGTTTGATATCCTAAAATATCAGT 57.201 33.333 0.00 0.00 44.99 3.41
3179 4885 5.018374 TGCCATACTCATATAGGGGTGTA 57.982 43.478 0.00 0.00 0.00 2.90
3346 5054 1.251251 ACAGCTGGACTTGGCAAATC 58.749 50.000 19.93 0.00 0.00 2.17
3347 5055 1.202976 ACAGCTGGACTTGGCAAATCT 60.203 47.619 19.93 0.00 0.00 2.40
3348 5056 1.201647 CAGCTGGACTTGGCAAATCTG 59.798 52.381 8.72 3.60 0.00 2.90
3360 5068 1.551883 GCAAATCTGGCCCTCAAACAT 59.448 47.619 0.00 0.00 0.00 2.71
3361 5069 2.417787 GCAAATCTGGCCCTCAAACATC 60.418 50.000 0.00 0.00 0.00 3.06
3406 5114 1.078143 GGCACTGACCAGTCATCCC 60.078 63.158 0.04 0.00 40.20 3.85
3415 5123 4.843728 TGACCAGTCATCCCTCAAATAAC 58.156 43.478 0.00 0.00 34.14 1.89
3449 5157 3.378339 CGGACACCTCAATTACCGTATC 58.622 50.000 0.00 0.00 36.38 2.24
3452 5160 4.341520 GGACACCTCAATTACCGTATCTCT 59.658 45.833 0.00 0.00 0.00 3.10
3453 5161 5.163437 GGACACCTCAATTACCGTATCTCTT 60.163 44.000 0.00 0.00 0.00 2.85
3480 5188 5.106712 CCATACAAACTCATGCAACTACGTT 60.107 40.000 0.00 0.00 0.00 3.99
3481 5189 4.209452 ACAAACTCATGCAACTACGTTG 57.791 40.909 0.00 0.00 45.24 4.10
3482 5190 3.874543 ACAAACTCATGCAACTACGTTGA 59.125 39.130 10.64 0.00 45.28 3.18
3488 5196 0.510790 TGCAACTACGTTGATGCACG 59.489 50.000 25.73 0.00 45.28 5.34
3489 5197 0.789383 GCAACTACGTTGATGCACGC 60.789 55.000 22.99 0.20 45.28 5.34
3491 5199 0.511221 AACTACGTTGATGCACGCAC 59.489 50.000 3.44 0.00 44.37 5.34
3492 5200 1.057208 CTACGTTGATGCACGCACG 59.943 57.895 10.87 10.87 44.37 5.34
3516 5224 2.688958 GTCCGGCTACTTCATCACTACT 59.311 50.000 0.00 0.00 0.00 2.57
3520 5228 5.041940 CCGGCTACTTCATCACTACTAAAC 58.958 45.833 0.00 0.00 0.00 2.01
3521 5229 5.163540 CCGGCTACTTCATCACTACTAAACT 60.164 44.000 0.00 0.00 0.00 2.66
3522 5230 6.039047 CCGGCTACTTCATCACTACTAAACTA 59.961 42.308 0.00 0.00 0.00 2.24
3523 5231 6.911511 CGGCTACTTCATCACTACTAAACTAC 59.088 42.308 0.00 0.00 0.00 2.73
3524 5232 7.414873 CGGCTACTTCATCACTACTAAACTACA 60.415 40.741 0.00 0.00 0.00 2.74
3525 5233 8.414778 GGCTACTTCATCACTACTAAACTACAT 58.585 37.037 0.00 0.00 0.00 2.29
3526 5234 9.239002 GCTACTTCATCACTACTAAACTACATG 57.761 37.037 0.00 0.00 0.00 3.21
3527 5235 9.239002 CTACTTCATCACTACTAAACTACATGC 57.761 37.037 0.00 0.00 0.00 4.06
3528 5236 7.042335 ACTTCATCACTACTAAACTACATGCC 58.958 38.462 0.00 0.00 0.00 4.40
3529 5237 6.538945 TCATCACTACTAAACTACATGCCA 57.461 37.500 0.00 0.00 0.00 4.92
3530 5238 7.124573 TCATCACTACTAAACTACATGCCAT 57.875 36.000 0.00 0.00 0.00 4.40
3531 5239 7.564793 TCATCACTACTAAACTACATGCCATT 58.435 34.615 0.00 0.00 0.00 3.16
3532 5240 7.495606 TCATCACTACTAAACTACATGCCATTG 59.504 37.037 0.00 0.00 0.00 2.82
3533 5241 6.941857 TCACTACTAAACTACATGCCATTGA 58.058 36.000 0.00 0.00 0.00 2.57
3534 5242 7.390823 TCACTACTAAACTACATGCCATTGAA 58.609 34.615 0.00 0.00 0.00 2.69
3535 5243 7.333423 TCACTACTAAACTACATGCCATTGAAC 59.667 37.037 0.00 0.00 0.00 3.18
3536 5244 5.897377 ACTAAACTACATGCCATTGAACC 57.103 39.130 0.00 0.00 0.00 3.62
3537 5245 5.321102 ACTAAACTACATGCCATTGAACCA 58.679 37.500 0.00 0.00 0.00 3.67
3538 5246 4.519540 AAACTACATGCCATTGAACCAC 57.480 40.909 0.00 0.00 0.00 4.16
3539 5247 2.446435 ACTACATGCCATTGAACCACC 58.554 47.619 0.00 0.00 0.00 4.61
3540 5248 2.224992 ACTACATGCCATTGAACCACCA 60.225 45.455 0.00 0.00 0.00 4.17
3541 5249 1.714541 ACATGCCATTGAACCACCAA 58.285 45.000 0.00 0.00 0.00 3.67
3542 5250 2.045524 ACATGCCATTGAACCACCAAA 58.954 42.857 0.00 0.00 0.00 3.28
3543 5251 2.437281 ACATGCCATTGAACCACCAAAA 59.563 40.909 0.00 0.00 0.00 2.44
3544 5252 3.072768 ACATGCCATTGAACCACCAAAAT 59.927 39.130 0.00 0.00 0.00 1.82
3545 5253 3.853355 TGCCATTGAACCACCAAAATT 57.147 38.095 0.00 0.00 0.00 1.82
3546 5254 4.162040 TGCCATTGAACCACCAAAATTT 57.838 36.364 0.00 0.00 0.00 1.82
3547 5255 3.881688 TGCCATTGAACCACCAAAATTTG 59.118 39.130 0.00 0.00 0.00 2.32
3558 5266 3.285816 CCAAAATTTGGCATGTTTGGC 57.714 42.857 12.23 0.00 45.17 4.52
3566 5274 0.461135 GGCATGTTTGGCTATGGTGG 59.539 55.000 0.00 0.00 44.68 4.61
3567 5275 1.473258 GCATGTTTGGCTATGGTGGA 58.527 50.000 0.00 0.00 0.00 4.02
3568 5276 1.406539 GCATGTTTGGCTATGGTGGAG 59.593 52.381 0.00 0.00 0.00 3.86
3569 5277 2.726821 CATGTTTGGCTATGGTGGAGT 58.273 47.619 0.00 0.00 0.00 3.85
3570 5278 2.969821 TGTTTGGCTATGGTGGAGTT 57.030 45.000 0.00 0.00 0.00 3.01
3571 5279 2.790433 TGTTTGGCTATGGTGGAGTTC 58.210 47.619 0.00 0.00 0.00 3.01
3572 5280 2.107378 TGTTTGGCTATGGTGGAGTTCA 59.893 45.455 0.00 0.00 0.00 3.18
3573 5281 3.245229 TGTTTGGCTATGGTGGAGTTCAT 60.245 43.478 0.00 0.00 0.00 2.57
3574 5282 3.281727 TTGGCTATGGTGGAGTTCATC 57.718 47.619 0.00 0.00 0.00 2.92
3583 5291 3.195698 GAGTTCATCCACGGCGGC 61.196 66.667 13.24 0.00 33.14 6.53
3584 5292 4.778143 AGTTCATCCACGGCGGCC 62.778 66.667 13.24 9.54 33.14 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.014857 CGTCTCCAACTATCCGACTCA 58.985 52.381 0.00 0.00 0.00 3.41
24 25 3.779271 ACTAATTCCTTCGACGTCTCC 57.221 47.619 14.70 0.00 0.00 3.71
33 34 7.829378 ACTGACGACAAATACTAATTCCTTC 57.171 36.000 0.00 0.00 0.00 3.46
34 35 9.886132 AATACTGACGACAAATACTAATTCCTT 57.114 29.630 0.00 0.00 0.00 3.36
35 36 9.886132 AAATACTGACGACAAATACTAATTCCT 57.114 29.630 0.00 0.00 0.00 3.36
65 72 1.656652 ACGCTATCATTGACAGTGGC 58.343 50.000 10.07 0.00 0.00 5.01
68 75 2.094182 ACCGAACGCTATCATTGACAGT 60.094 45.455 0.00 0.00 0.00 3.55
69 76 2.282555 CACCGAACGCTATCATTGACAG 59.717 50.000 0.00 0.00 0.00 3.51
70 77 2.267426 CACCGAACGCTATCATTGACA 58.733 47.619 0.00 0.00 0.00 3.58
71 78 1.004927 GCACCGAACGCTATCATTGAC 60.005 52.381 0.00 0.00 0.00 3.18
72 79 1.286501 GCACCGAACGCTATCATTGA 58.713 50.000 0.00 0.00 0.00 2.57
73 80 0.043053 CGCACCGAACGCTATCATTG 60.043 55.000 0.00 0.00 0.00 2.82
74 81 0.459585 ACGCACCGAACGCTATCATT 60.460 50.000 0.00 0.00 0.00 2.57
122 142 0.669619 TCCGTGTCACGACTAGCAAA 59.330 50.000 26.53 0.00 46.05 3.68
123 143 0.669619 TTCCGTGTCACGACTAGCAA 59.330 50.000 26.53 6.38 46.05 3.91
200 497 4.009675 TGATTGCTAAACTAACTGGCTGG 58.990 43.478 0.00 0.00 0.00 4.85
296 595 5.535030 ACTTGGTGAGATTCCAGTTTTTACC 59.465 40.000 0.00 0.00 36.28 2.85
337 636 2.811317 CGGCTCTTGAGTGACGGC 60.811 66.667 0.57 0.00 36.51 5.68
362 661 2.039480 TCCATGATTATCCTCAGCTGGC 59.961 50.000 15.13 0.00 29.20 4.85
394 705 2.690497 TCGCCATGGTTTTTGTTCTTCA 59.310 40.909 14.67 0.00 0.00 3.02
432 744 1.716826 TTGACGTGGAAACCAACGGC 61.717 55.000 0.00 11.94 36.88 5.68
437 749 0.394488 TTGCCTTGACGTGGAAACCA 60.394 50.000 0.00 0.00 0.00 3.67
443 755 2.507339 AAAATGTTGCCTTGACGTGG 57.493 45.000 0.00 0.00 0.00 4.94
486 799 1.737793 CGCTGTTACTAAGGCCTTTGG 59.262 52.381 26.08 18.90 0.00 3.28
793 1540 1.112113 GCGACAGTTCCTCCCTCATA 58.888 55.000 0.00 0.00 0.00 2.15
795 1542 1.228894 AGCGACAGTTCCTCCCTCA 60.229 57.895 0.00 0.00 0.00 3.86
827 1575 3.072468 TTGCCTCCTCCGGGTACG 61.072 66.667 0.00 0.00 40.55 3.67
829 1577 3.072468 CGTTGCCTCCTCCGGGTA 61.072 66.667 0.00 0.00 0.00 3.69
833 1581 1.521681 GATTCCGTTGCCTCCTCCG 60.522 63.158 0.00 0.00 0.00 4.63
834 1582 0.035439 TTGATTCCGTTGCCTCCTCC 60.035 55.000 0.00 0.00 0.00 4.30
842 1595 2.785679 GAAATCGCCTTGATTCCGTTG 58.214 47.619 0.00 0.00 46.65 4.10
931 1684 4.177026 GGATCGATGTATGTGTATGGAGC 58.823 47.826 0.54 0.00 0.00 4.70
932 1685 5.391312 TGGATCGATGTATGTGTATGGAG 57.609 43.478 0.54 0.00 0.00 3.86
937 1690 4.314961 GCCAATGGATCGATGTATGTGTA 58.685 43.478 0.54 0.00 0.00 2.90
981 1744 6.255596 TCCATTGTCGACATAGCTAGATAC 57.744 41.667 20.80 0.00 0.00 2.24
982 1745 5.416013 CCTCCATTGTCGACATAGCTAGATA 59.584 44.000 20.80 0.45 0.00 1.98
983 1746 4.219507 CCTCCATTGTCGACATAGCTAGAT 59.780 45.833 20.80 4.84 0.00 1.98
984 1747 3.570125 CCTCCATTGTCGACATAGCTAGA 59.430 47.826 20.80 9.65 0.00 2.43
985 1748 3.319405 ACCTCCATTGTCGACATAGCTAG 59.681 47.826 20.80 12.82 0.00 3.42
986 1749 3.068165 CACCTCCATTGTCGACATAGCTA 59.932 47.826 20.80 3.86 0.00 3.32
987 1750 2.111384 ACCTCCATTGTCGACATAGCT 58.889 47.619 20.80 1.73 0.00 3.32
988 1751 2.159099 TCACCTCCATTGTCGACATAGC 60.159 50.000 20.80 0.00 0.00 2.97
1226 1992 0.458889 CTGCATGCACCAAATTCGGG 60.459 55.000 18.46 0.00 0.00 5.14
1268 2034 4.873129 CCTCGGTGCGGATGGTCG 62.873 72.222 0.00 0.00 0.00 4.79
1277 2043 2.507324 GTCTCGAAGCCTCGGTGC 60.507 66.667 4.63 0.00 45.49 5.01
1283 2049 2.637383 GGTGACGGTCTCGAAGCCT 61.637 63.158 9.88 0.00 40.11 4.58
1329 2099 4.543736 GCGCGATCGACAGCAACG 62.544 66.667 21.57 11.97 38.10 4.10
1351 2121 5.551233 ACTAGCTAGCACATCAAGAACAAA 58.449 37.500 20.91 0.00 0.00 2.83
1396 2169 3.634397 TTGATGCTGCTAGCTAGGTTT 57.366 42.857 22.10 0.00 42.97 3.27
1405 2178 3.701205 TTCTGGACTTTGATGCTGCTA 57.299 42.857 0.00 0.00 0.00 3.49
1406 2179 2.574006 TTCTGGACTTTGATGCTGCT 57.426 45.000 0.00 0.00 0.00 4.24
1407 2180 4.023365 GGATATTCTGGACTTTGATGCTGC 60.023 45.833 0.00 0.00 0.00 5.25
1408 2181 5.008415 GTGGATATTCTGGACTTTGATGCTG 59.992 44.000 0.00 0.00 0.00 4.41
1409 2182 5.128919 GTGGATATTCTGGACTTTGATGCT 58.871 41.667 0.00 0.00 0.00 3.79
1411 2184 5.297776 GGTGTGGATATTCTGGACTTTGATG 59.702 44.000 0.00 0.00 0.00 3.07
1413 2186 4.288366 TGGTGTGGATATTCTGGACTTTGA 59.712 41.667 0.00 0.00 0.00 2.69
1414 2187 4.588899 TGGTGTGGATATTCTGGACTTTG 58.411 43.478 0.00 0.00 0.00 2.77
1415 2188 4.927267 TGGTGTGGATATTCTGGACTTT 57.073 40.909 0.00 0.00 0.00 2.66
1416 2189 4.927267 TTGGTGTGGATATTCTGGACTT 57.073 40.909 0.00 0.00 0.00 3.01
1417 2190 4.927267 TTTGGTGTGGATATTCTGGACT 57.073 40.909 0.00 0.00 0.00 3.85
1419 2192 6.726379 TGTATTTTGGTGTGGATATTCTGGA 58.274 36.000 0.00 0.00 0.00 3.86
1420 2193 7.587037 ATGTATTTTGGTGTGGATATTCTGG 57.413 36.000 0.00 0.00 0.00 3.86
1421 2194 7.922278 CCAATGTATTTTGGTGTGGATATTCTG 59.078 37.037 0.00 0.00 41.09 3.02
1424 2197 6.155910 TGCCAATGTATTTTGGTGTGGATATT 59.844 34.615 5.22 0.00 46.54 1.28
1426 2199 5.019470 TGCCAATGTATTTTGGTGTGGATA 58.981 37.500 5.22 0.00 46.54 2.59
1427 2200 3.837146 TGCCAATGTATTTTGGTGTGGAT 59.163 39.130 5.22 0.00 46.54 3.41
1428 2201 3.234353 TGCCAATGTATTTTGGTGTGGA 58.766 40.909 5.22 0.00 46.54 4.02
1429 2202 3.674528 TGCCAATGTATTTTGGTGTGG 57.325 42.857 5.22 0.00 46.54 4.17
1447 2220 4.708726 ACAGCTCAATTGGAAGTATTGC 57.291 40.909 5.42 0.00 36.73 3.56
1450 2223 4.876107 CCGTTACAGCTCAATTGGAAGTAT 59.124 41.667 5.42 0.00 0.00 2.12
1451 2224 4.250464 CCGTTACAGCTCAATTGGAAGTA 58.750 43.478 5.42 1.70 0.00 2.24
1452 2225 3.074412 CCGTTACAGCTCAATTGGAAGT 58.926 45.455 5.42 2.64 0.00 3.01
1453 2226 2.159517 GCCGTTACAGCTCAATTGGAAG 60.160 50.000 5.42 0.00 0.00 3.46
1454 2227 1.810151 GCCGTTACAGCTCAATTGGAA 59.190 47.619 5.42 0.00 0.00 3.53
1455 2228 1.448985 GCCGTTACAGCTCAATTGGA 58.551 50.000 5.42 0.00 0.00 3.53
1456 2229 0.096976 CGCCGTTACAGCTCAATTGG 59.903 55.000 5.42 0.00 0.00 3.16
1458 2231 0.321298 ACCGCCGTTACAGCTCAATT 60.321 50.000 0.00 0.00 0.00 2.32
1474 2270 2.594303 TTGTCCAAGCTGCCACCG 60.594 61.111 0.00 0.00 0.00 4.94
1475 2271 2.564721 GGTTGTCCAAGCTGCCACC 61.565 63.158 0.00 0.00 36.02 4.61
1486 2282 1.486439 CGTTGCATGTTTGGTTGTCC 58.514 50.000 0.00 0.00 0.00 4.02
1490 2286 0.757188 TCCCCGTTGCATGTTTGGTT 60.757 50.000 0.00 0.00 0.00 3.67
1521 2317 8.715191 AAGTTGCAATTAAGTTTGACAAATGA 57.285 26.923 0.59 0.00 30.30 2.57
1523 2319 9.986833 GAAAAGTTGCAATTAAGTTTGACAAAT 57.013 25.926 0.59 0.00 34.40 2.32
1646 2470 5.214417 CAAAGATTTCGTTCTCATTGCACA 58.786 37.500 0.00 0.00 0.00 4.57
1668 2492 5.003804 GGCTTCTTCAGTTATCTTTGGACA 58.996 41.667 0.00 0.00 0.00 4.02
1671 2495 4.003648 ACGGCTTCTTCAGTTATCTTTGG 58.996 43.478 0.00 0.00 0.00 3.28
1686 2510 5.390567 CCAGTACTTAATTTCACACGGCTTC 60.391 44.000 0.00 0.00 0.00 3.86
1688 2512 4.000988 CCAGTACTTAATTTCACACGGCT 58.999 43.478 0.00 0.00 0.00 5.52
1689 2513 3.749609 ACCAGTACTTAATTTCACACGGC 59.250 43.478 0.00 0.00 0.00 5.68
1747 2574 4.033702 GCGGTTAGCCAACAAATCTACTAC 59.966 45.833 0.00 0.00 40.81 2.73
1771 2598 0.966920 GAAAGGGTCGTCAGGTCAGA 59.033 55.000 0.00 0.00 0.00 3.27
2000 2828 3.878519 CGTCGCGGGAGAGAGGAC 61.879 72.222 6.13 0.00 45.35 3.85
2053 2881 0.366871 GAGCGCACGTGTTAGTCATG 59.633 55.000 18.38 0.00 38.86 3.07
2527 3376 4.221924 TCGAACCCATTGATGAAGTACTCA 59.778 41.667 0.00 0.00 38.81 3.41
2542 3391 1.374947 CTTGGCCTTCTCGAACCCA 59.625 57.895 3.32 0.00 0.00 4.51
2619 3468 3.730761 GCACAGCAGGCTTCACCG 61.731 66.667 0.00 0.00 46.52 4.94
2620 3469 3.730761 CGCACAGCAGGCTTCACC 61.731 66.667 0.00 0.00 39.61 4.02
2766 3631 5.793030 AGGAACTGAGGGAGTATAATTCG 57.207 43.478 0.00 0.00 37.18 3.34
2778 3643 9.892130 ACAAAGACTTATATTTAGGAACTGAGG 57.108 33.333 0.00 0.00 41.52 3.86
2793 3658 9.702253 TCTAGTGGAATCTCTACAAAGACTTAT 57.298 33.333 0.00 0.00 29.47 1.73
2794 3659 9.702253 ATCTAGTGGAATCTCTACAAAGACTTA 57.298 33.333 0.00 0.00 29.78 2.24
2795 3660 8.474025 CATCTAGTGGAATCTCTACAAAGACTT 58.526 37.037 0.00 0.00 29.78 3.01
2796 3661 8.006298 CATCTAGTGGAATCTCTACAAAGACT 57.994 38.462 0.00 0.00 29.78 3.24
2813 3678 2.623416 TCCGTATGCAGTCCATCTAGTG 59.377 50.000 0.00 0.00 35.34 2.74
2814 3679 2.887783 CTCCGTATGCAGTCCATCTAGT 59.112 50.000 0.00 0.00 35.34 2.57
2815 3680 2.352225 GCTCCGTATGCAGTCCATCTAG 60.352 54.545 0.00 0.00 35.34 2.43
2816 3681 1.613925 GCTCCGTATGCAGTCCATCTA 59.386 52.381 0.00 0.00 35.34 1.98
2817 3682 0.390860 GCTCCGTATGCAGTCCATCT 59.609 55.000 0.00 0.00 35.34 2.90
2818 3683 0.104855 TGCTCCGTATGCAGTCCATC 59.895 55.000 0.00 0.00 35.31 3.51
2819 3684 0.541392 TTGCTCCGTATGCAGTCCAT 59.459 50.000 0.00 0.00 41.71 3.41
2820 3685 0.323302 TTTGCTCCGTATGCAGTCCA 59.677 50.000 0.00 0.00 41.71 4.02
2821 3686 1.130561 GTTTTGCTCCGTATGCAGTCC 59.869 52.381 0.00 0.00 41.71 3.85
2822 3687 1.201921 CGTTTTGCTCCGTATGCAGTC 60.202 52.381 0.00 0.00 41.71 3.51
2823 3688 0.796312 CGTTTTGCTCCGTATGCAGT 59.204 50.000 0.00 0.00 41.71 4.40
2824 3689 0.096976 CCGTTTTGCTCCGTATGCAG 59.903 55.000 0.00 0.00 41.71 4.41
2825 3690 0.320858 TCCGTTTTGCTCCGTATGCA 60.321 50.000 0.00 0.00 38.80 3.96
2826 3691 1.014352 ATCCGTTTTGCTCCGTATGC 58.986 50.000 0.00 0.00 0.00 3.14
2827 3692 2.276201 TCATCCGTTTTGCTCCGTATG 58.724 47.619 0.00 0.00 0.00 2.39
2828 3693 2.684001 TCATCCGTTTTGCTCCGTAT 57.316 45.000 0.00 0.00 0.00 3.06
2829 3694 2.459060 TTCATCCGTTTTGCTCCGTA 57.541 45.000 0.00 0.00 0.00 4.02
2830 3695 1.737793 GATTCATCCGTTTTGCTCCGT 59.262 47.619 0.00 0.00 0.00 4.69
2831 3696 2.009774 AGATTCATCCGTTTTGCTCCG 58.990 47.619 0.00 0.00 0.00 4.63
2832 3697 3.938963 TGTAGATTCATCCGTTTTGCTCC 59.061 43.478 0.00 0.00 0.00 4.70
2833 3698 4.631813 AGTGTAGATTCATCCGTTTTGCTC 59.368 41.667 0.00 0.00 0.00 4.26
2834 3699 4.579869 AGTGTAGATTCATCCGTTTTGCT 58.420 39.130 0.00 0.00 0.00 3.91
2835 3700 4.946784 AGTGTAGATTCATCCGTTTTGC 57.053 40.909 0.00 0.00 0.00 3.68
2836 3701 9.840427 ATTTTAAGTGTAGATTCATCCGTTTTG 57.160 29.630 0.00 0.00 0.00 2.44
2837 3702 9.840427 CATTTTAAGTGTAGATTCATCCGTTTT 57.160 29.630 0.00 0.00 0.00 2.43
2838 3703 7.968405 GCATTTTAAGTGTAGATTCATCCGTTT 59.032 33.333 0.00 0.00 0.00 3.60
2839 3704 7.120579 TGCATTTTAAGTGTAGATTCATCCGTT 59.879 33.333 0.00 0.00 0.00 4.44
2840 3705 6.597672 TGCATTTTAAGTGTAGATTCATCCGT 59.402 34.615 0.00 0.00 0.00 4.69
2841 3706 7.015226 TGCATTTTAAGTGTAGATTCATCCG 57.985 36.000 0.00 0.00 0.00 4.18
2842 3707 8.844244 AGATGCATTTTAAGTGTAGATTCATCC 58.156 33.333 0.00 0.00 0.00 3.51
2854 3719 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
2858 3723 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
2859 3724 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
2860 3725 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
2861 3726 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
2862 3727 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
2863 3728 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
2864 3729 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
2865 3730 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
2866 3731 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
2867 3732 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
2868 3733 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
2869 3734 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
2870 3735 7.231925 ACACTATGAACCACATACGGATGTATA 59.768 37.037 14.23 6.48 44.82 1.47
2871 3736 6.041637 ACACTATGAACCACATACGGATGTAT 59.958 38.462 14.23 5.54 44.82 2.29
2872 3737 5.361571 ACACTATGAACCACATACGGATGTA 59.638 40.000 14.23 0.00 44.82 2.29
2874 3739 4.693283 ACACTATGAACCACATACGGATG 58.307 43.478 5.94 5.94 40.07 3.51
2875 3740 6.474140 TTACACTATGAACCACATACGGAT 57.526 37.500 0.00 0.00 40.07 4.18
2876 3741 5.918426 TTACACTATGAACCACATACGGA 57.082 39.130 0.00 0.00 40.07 4.69
2877 3742 6.513180 AGATTACACTATGAACCACATACGG 58.487 40.000 0.00 0.00 40.07 4.02
2878 3743 7.426410 AGAGATTACACTATGAACCACATACG 58.574 38.462 0.00 0.00 40.07 3.06
2879 3744 9.680315 GTAGAGATTACACTATGAACCACATAC 57.320 37.037 0.00 0.00 40.07 2.39
2880 3745 9.416284 TGTAGAGATTACACTATGAACCACATA 57.584 33.333 0.00 0.00 40.07 2.29
2881 3746 8.306313 TGTAGAGATTACACTATGAACCACAT 57.694 34.615 0.00 0.00 42.39 3.21
2882 3747 7.712204 TGTAGAGATTACACTATGAACCACA 57.288 36.000 0.00 0.00 0.00 4.17
2883 3748 8.997621 TTTGTAGAGATTACACTATGAACCAC 57.002 34.615 0.00 0.00 0.00 4.16
2884 3749 9.031537 TCTTTGTAGAGATTACACTATGAACCA 57.968 33.333 0.00 0.00 0.00 3.67
2885 3750 9.303537 GTCTTTGTAGAGATTACACTATGAACC 57.696 37.037 0.00 0.00 0.00 3.62
2904 3769 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2905 3770 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2906 3771 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2907 3772 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2908 3773 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2909 3774 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2910 3775 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2911 3776 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2912 3777 9.827198 TTATACTCCCTCCGTTCCTAAATATAA 57.173 33.333 0.00 0.00 0.00 0.98
2913 3778 9.827198 TTTATACTCCCTCCGTTCCTAAATATA 57.173 33.333 0.00 0.00 0.00 0.86
2914 3779 8.731591 TTTATACTCCCTCCGTTCCTAAATAT 57.268 34.615 0.00 0.00 0.00 1.28
2915 3780 8.424133 GTTTTATACTCCCTCCGTTCCTAAATA 58.576 37.037 0.00 0.00 0.00 1.40
2916 3781 7.126879 AGTTTTATACTCCCTCCGTTCCTAAAT 59.873 37.037 0.00 0.00 28.23 1.40
2917 3782 6.441604 AGTTTTATACTCCCTCCGTTCCTAAA 59.558 38.462 0.00 0.00 28.23 1.85
2918 3783 5.960202 AGTTTTATACTCCCTCCGTTCCTAA 59.040 40.000 0.00 0.00 28.23 2.69
2919 3784 5.522641 AGTTTTATACTCCCTCCGTTCCTA 58.477 41.667 0.00 0.00 28.23 2.94
2920 3785 4.359996 AGTTTTATACTCCCTCCGTTCCT 58.640 43.478 0.00 0.00 28.23 3.36
2921 3786 4.750021 AGTTTTATACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 28.23 3.62
2922 3787 6.462552 AGTAGTTTTATACTCCCTCCGTTC 57.537 41.667 0.00 0.00 38.33 3.95
2923 3788 7.122048 AGTAGTAGTTTTATACTCCCTCCGTT 58.878 38.462 0.00 0.00 38.33 4.44
2924 3789 6.667661 AGTAGTAGTTTTATACTCCCTCCGT 58.332 40.000 0.00 0.00 38.33 4.69
2925 3790 7.200778 GAGTAGTAGTTTTATACTCCCTCCG 57.799 44.000 0.00 0.00 39.56 4.63
2931 3796 6.770303 ACGGAGGGAGTAGTAGTTTTATACTC 59.230 42.308 3.54 3.54 43.00 2.59
2932 3797 6.667661 ACGGAGGGAGTAGTAGTTTTATACT 58.332 40.000 0.00 0.00 41.04 2.12
2933 3798 6.951062 ACGGAGGGAGTAGTAGTTTTATAC 57.049 41.667 0.00 0.00 0.00 1.47
2934 3799 6.547510 GGAACGGAGGGAGTAGTAGTTTTATA 59.452 42.308 0.00 0.00 0.00 0.98
2935 3800 5.362143 GGAACGGAGGGAGTAGTAGTTTTAT 59.638 44.000 0.00 0.00 0.00 1.40
2936 3801 4.706962 GGAACGGAGGGAGTAGTAGTTTTA 59.293 45.833 0.00 0.00 0.00 1.52
2995 4695 5.515106 ACGATCCATCCAAAATTTTCCCTA 58.485 37.500 0.00 0.00 0.00 3.53
2997 4697 4.736126 ACGATCCATCCAAAATTTTCCC 57.264 40.909 0.00 0.00 0.00 3.97
3004 4704 3.133183 TCCGACATACGATCCATCCAAAA 59.867 43.478 0.00 0.00 45.77 2.44
3005 4705 2.696187 TCCGACATACGATCCATCCAAA 59.304 45.455 0.00 0.00 45.77 3.28
3006 4706 2.312390 TCCGACATACGATCCATCCAA 58.688 47.619 0.00 0.00 45.77 3.53
3027 4728 1.811965 TCCGTGACGAAGGAAATACGA 59.188 47.619 6.54 0.00 32.86 3.43
3028 4729 2.267188 TCCGTGACGAAGGAAATACG 57.733 50.000 6.54 0.00 32.86 3.06
3053 4754 2.602257 TCGTGAGGAATAGGTGCATG 57.398 50.000 0.00 0.00 0.00 4.06
3054 4755 3.055094 ACTTTCGTGAGGAATAGGTGCAT 60.055 43.478 0.00 0.00 33.85 3.96
3055 4756 2.301870 ACTTTCGTGAGGAATAGGTGCA 59.698 45.455 0.00 0.00 33.85 4.57
3179 4885 0.323087 TTGCAGCTCTCATGTGCCAT 60.323 50.000 3.10 0.00 36.31 4.40
3186 4892 2.100916 GGAAATGCATTGCAGCTCTCAT 59.899 45.455 19.27 0.00 43.65 2.90
3275 4983 3.009143 CCACCCACCTCTTAGTAAAGCTT 59.991 47.826 0.00 0.00 32.36 3.74
3276 4984 2.572104 CCACCCACCTCTTAGTAAAGCT 59.428 50.000 0.00 0.00 32.36 3.74
3285 4993 2.344093 ACTATGTCCACCCACCTCTT 57.656 50.000 0.00 0.00 0.00 2.85
3332 5040 2.657297 GCCAGATTTGCCAAGTCCA 58.343 52.632 0.00 0.00 0.00 4.02
3346 5054 2.409870 GCGGATGTTTGAGGGCCAG 61.410 63.158 6.18 0.00 0.00 4.85
3347 5055 2.361104 GCGGATGTTTGAGGGCCA 60.361 61.111 6.18 0.00 0.00 5.36
3348 5056 3.508840 CGCGGATGTTTGAGGGCC 61.509 66.667 0.00 0.00 0.00 5.80
3350 5058 2.106683 GTCCGCGGATGTTTGAGGG 61.107 63.158 33.58 0.00 0.00 4.30
3386 5094 1.448540 GATGACTGGTCAGTGCCCG 60.449 63.158 8.49 0.00 43.61 6.13
3394 5102 3.871594 CGTTATTTGAGGGATGACTGGTC 59.128 47.826 0.00 0.00 0.00 4.02
3397 5105 2.614057 GCCGTTATTTGAGGGATGACTG 59.386 50.000 0.00 0.00 0.00 3.51
3398 5106 2.741878 CGCCGTTATTTGAGGGATGACT 60.742 50.000 0.00 0.00 0.00 3.41
3406 5114 1.434555 TGTGGACGCCGTTATTTGAG 58.565 50.000 0.00 0.00 0.00 3.02
3449 5157 7.281774 AGTTGCATGAGTTTGTATGGATAAGAG 59.718 37.037 0.00 0.00 0.00 2.85
3452 5160 7.011016 CGTAGTTGCATGAGTTTGTATGGATAA 59.989 37.037 0.00 0.00 0.00 1.75
3453 5161 6.478673 CGTAGTTGCATGAGTTTGTATGGATA 59.521 38.462 0.00 0.00 0.00 2.59
3488 5196 3.621892 AAGTAGCCGGACGACGTGC 62.622 63.158 5.05 7.51 42.24 5.34
3489 5197 1.513586 GAAGTAGCCGGACGACGTG 60.514 63.158 5.05 0.00 42.24 4.49
3491 5199 0.591741 GATGAAGTAGCCGGACGACG 60.592 60.000 5.05 0.00 43.80 5.12
3492 5200 0.454600 TGATGAAGTAGCCGGACGAC 59.545 55.000 5.05 2.98 0.00 4.34
3516 5224 4.461081 GGTGGTTCAATGGCATGTAGTTTA 59.539 41.667 0.00 0.00 0.00 2.01
3520 5228 2.445427 TGGTGGTTCAATGGCATGTAG 58.555 47.619 0.00 0.00 0.00 2.74
3521 5229 2.593925 TGGTGGTTCAATGGCATGTA 57.406 45.000 0.00 0.00 0.00 2.29
3522 5230 1.714541 TTGGTGGTTCAATGGCATGT 58.285 45.000 0.00 0.00 0.00 3.21
3523 5231 2.835580 TTTGGTGGTTCAATGGCATG 57.164 45.000 0.00 0.00 0.00 4.06
3524 5232 4.370094 AATTTTGGTGGTTCAATGGCAT 57.630 36.364 0.00 0.00 0.00 4.40
3525 5233 3.853355 AATTTTGGTGGTTCAATGGCA 57.147 38.095 0.00 0.00 0.00 4.92
3526 5234 3.252944 CCAAATTTTGGTGGTTCAATGGC 59.747 43.478 18.34 0.00 45.93 4.40
3539 5247 5.392165 CCATAGCCAAACATGCCAAATTTTG 60.392 40.000 1.99 1.99 0.00 2.44
3540 5248 4.701171 CCATAGCCAAACATGCCAAATTTT 59.299 37.500 0.00 0.00 0.00 1.82
3541 5249 4.263418 ACCATAGCCAAACATGCCAAATTT 60.263 37.500 0.00 0.00 0.00 1.82
3542 5250 3.263937 ACCATAGCCAAACATGCCAAATT 59.736 39.130 0.00 0.00 0.00 1.82
3543 5251 2.839425 ACCATAGCCAAACATGCCAAAT 59.161 40.909 0.00 0.00 0.00 2.32
3544 5252 2.028294 CACCATAGCCAAACATGCCAAA 60.028 45.455 0.00 0.00 0.00 3.28
3545 5253 1.549620 CACCATAGCCAAACATGCCAA 59.450 47.619 0.00 0.00 0.00 4.52
3546 5254 1.184431 CACCATAGCCAAACATGCCA 58.816 50.000 0.00 0.00 0.00 4.92
3547 5255 0.461135 CCACCATAGCCAAACATGCC 59.539 55.000 0.00 0.00 0.00 4.40
3548 5256 1.406539 CTCCACCATAGCCAAACATGC 59.593 52.381 0.00 0.00 0.00 4.06
3549 5257 2.726821 ACTCCACCATAGCCAAACATG 58.273 47.619 0.00 0.00 0.00 3.21
3550 5258 3.245229 TGAACTCCACCATAGCCAAACAT 60.245 43.478 0.00 0.00 0.00 2.71
3551 5259 2.107378 TGAACTCCACCATAGCCAAACA 59.893 45.455 0.00 0.00 0.00 2.83
3552 5260 2.790433 TGAACTCCACCATAGCCAAAC 58.210 47.619 0.00 0.00 0.00 2.93
3553 5261 3.620488 GATGAACTCCACCATAGCCAAA 58.380 45.455 0.00 0.00 0.00 3.28
3554 5262 2.092429 GGATGAACTCCACCATAGCCAA 60.092 50.000 0.00 0.00 44.26 4.52
3555 5263 1.490490 GGATGAACTCCACCATAGCCA 59.510 52.381 0.00 0.00 44.26 4.75
3556 5264 2.262423 GGATGAACTCCACCATAGCC 57.738 55.000 0.00 0.00 44.26 3.93
3565 5273 2.511600 CCGCCGTGGATGAACTCC 60.512 66.667 0.00 0.00 45.19 3.85
3566 5274 3.195698 GCCGCCGTGGATGAACTC 61.196 66.667 0.88 0.00 42.00 3.01
3567 5275 4.778143 GGCCGCCGTGGATGAACT 62.778 66.667 0.88 0.00 42.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.