Multiple sequence alignment - TraesCS5D01G268900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G268900 chr5D 100.000 2843 0 0 1 2843 371873970 371871128 0.000000e+00 5251.0
1 TraesCS5D01G268900 chr5D 88.402 388 36 7 191 572 17124038 17123654 2.580000e-125 459.0
2 TraesCS5D01G268900 chr5D 89.344 366 33 3 197 556 548401803 548402168 3.340000e-124 455.0
3 TraesCS5D01G268900 chr5D 88.095 378 34 6 198 572 520802523 520802892 3.360000e-119 438.0
4 TraesCS5D01G268900 chr5D 76.632 475 96 12 1380 1845 480154987 480154519 6.080000e-62 248.0
5 TraesCS5D01G268900 chr5A 93.242 799 39 6 1314 2105 475310432 475309642 0.000000e+00 1162.0
6 TraesCS5D01G268900 chr5A 89.950 597 45 6 582 1165 475311178 475310584 0.000000e+00 756.0
7 TraesCS5D01G268900 chr5A 91.411 326 20 1 2369 2694 475304156 475303839 9.350000e-120 440.0
8 TraesCS5D01G268900 chr5A 89.531 277 26 2 2099 2375 475305012 475304739 5.830000e-92 348.0
9 TraesCS5D01G268900 chr5A 91.447 152 13 0 46 197 475311323 475311172 2.870000e-50 209.0
10 TraesCS5D01G268900 chr5B 95.305 639 25 1 1163 1801 441811790 441811157 0.000000e+00 1009.0
11 TraesCS5D01G268900 chr5B 88.020 601 36 18 582 1165 441812403 441811822 0.000000e+00 678.0
12 TraesCS5D01G268900 chr5B 87.817 394 39 6 190 576 700916145 700915754 1.200000e-123 453.0
13 TraesCS5D01G268900 chr5B 91.103 281 21 3 2075 2352 441810398 441810119 7.430000e-101 377.0
14 TraesCS5D01G268900 chr5B 93.171 205 13 1 2584 2788 441809213 441809010 1.660000e-77 300.0
15 TraesCS5D01G268900 chr3B 87.696 382 41 4 198 575 533855253 533854874 9.350000e-120 440.0
16 TraesCS5D01G268900 chr3B 72.887 284 53 19 1469 1737 144070295 144070569 3.040000e-10 76.8
17 TraesCS5D01G268900 chr3B 72.598 281 53 20 1472 1737 144057677 144057406 1.410000e-08 71.3
18 TraesCS5D01G268900 chr7D 87.402 381 38 7 198 572 213385861 213386237 2.020000e-116 429.0
19 TraesCS5D01G268900 chr6B 87.871 371 35 6 207 572 475583502 475583137 7.280000e-116 427.0
20 TraesCS5D01G268900 chr1B 87.139 381 41 4 198 572 519642717 519643095 2.620000e-115 425.0
21 TraesCS5D01G268900 chr1B 78.870 407 77 8 1380 1783 101519717 101520117 1.680000e-67 267.0
22 TraesCS5D01G268900 chr1B 87.261 157 17 1 1000 1156 101591797 101591644 2.910000e-40 176.0
23 TraesCS5D01G268900 chr1B 86.335 161 18 2 997 1156 101519241 101519398 3.770000e-39 172.0
24 TraesCS5D01G268900 chr4D 87.071 379 43 6 196 572 461556602 461556976 9.420000e-115 424.0
25 TraesCS5D01G268900 chr2D 77.874 461 90 11 1379 1835 15966852 15967304 2.790000e-70 276.0
26 TraesCS5D01G268900 chr2D 87.037 162 18 1 998 1159 15966471 15966629 2.250000e-41 180.0
27 TraesCS5D01G268900 chr2A 76.674 463 92 14 1379 1835 17857631 17858083 2.830000e-60 243.0
28 TraesCS5D01G268900 chr1D 87.342 158 17 1 999 1156 63543581 63543735 8.090000e-41 178.0
29 TraesCS5D01G268900 chr1A 87.261 157 17 1 1000 1156 61575845 61575998 2.910000e-40 176.0
30 TraesCS5D01G268900 chr1A 86.624 157 18 1 1000 1156 61713672 61713825 1.350000e-38 171.0
31 TraesCS5D01G268900 chr1A 76.000 250 53 7 1456 1703 99139555 99139799 3.850000e-24 122.0
32 TraesCS5D01G268900 chr6D 86.250 160 19 3 1000 1159 6982173 6982329 1.350000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G268900 chr5D 371871128 371873970 2842 True 5251.0 5251 100.000000 1 2843 1 chr5D.!!$R2 2842
1 TraesCS5D01G268900 chr5A 475309642 475311323 1681 True 709.0 1162 91.546333 46 2105 3 chr5A.!!$R2 2059
2 TraesCS5D01G268900 chr5A 475303839 475305012 1173 True 394.0 440 90.471000 2099 2694 2 chr5A.!!$R1 595
3 TraesCS5D01G268900 chr5B 441809010 441812403 3393 True 591.0 1009 91.899750 582 2788 4 chr5B.!!$R2 2206
4 TraesCS5D01G268900 chr1B 101519241 101520117 876 False 219.5 267 82.602500 997 1783 2 chr1B.!!$F2 786
5 TraesCS5D01G268900 chr2D 15966471 15967304 833 False 228.0 276 82.455500 998 1835 2 chr2D.!!$F1 837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.039618 GCCCACCCTCCTCAAAATCA 59.96 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 2011 0.324552 TCGGACCGGGGATGACTTTA 60.325 55.0 15.25 0.0 0.0 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.115199 GATGAAGCGGCCCACCCT 62.115 66.667 0.00 0.00 0.00 4.34
18 19 4.115199 ATGAAGCGGCCCACCCTC 62.115 66.667 0.00 0.00 0.00 4.30
24 25 3.646715 CGGCCCACCCTCCTCAAA 61.647 66.667 0.00 0.00 0.00 2.69
25 26 2.851045 GGCCCACCCTCCTCAAAA 59.149 61.111 0.00 0.00 0.00 2.44
26 27 1.388133 GGCCCACCCTCCTCAAAAT 59.612 57.895 0.00 0.00 0.00 1.82
27 28 0.684479 GGCCCACCCTCCTCAAAATC 60.684 60.000 0.00 0.00 0.00 2.17
28 29 0.039618 GCCCACCCTCCTCAAAATCA 59.960 55.000 0.00 0.00 0.00 2.57
29 30 1.957113 GCCCACCCTCCTCAAAATCAG 60.957 57.143 0.00 0.00 0.00 2.90
30 31 1.341383 CCCACCCTCCTCAAAATCAGG 60.341 57.143 0.00 0.00 0.00 3.86
32 33 3.911719 CCCTCCTCAAAATCAGGGG 57.088 57.895 0.00 0.00 41.96 4.79
33 34 1.298953 CCCTCCTCAAAATCAGGGGA 58.701 55.000 0.00 0.00 41.96 4.81
34 35 1.855599 CCCTCCTCAAAATCAGGGGAT 59.144 52.381 0.00 0.00 41.96 3.85
35 36 2.423947 CCCTCCTCAAAATCAGGGGATG 60.424 54.545 0.00 0.00 41.96 3.51
36 37 2.305009 CTCCTCAAAATCAGGGGATGC 58.695 52.381 0.00 0.00 32.40 3.91
37 38 1.640149 TCCTCAAAATCAGGGGATGCA 59.360 47.619 0.00 0.00 32.92 3.96
38 39 2.042842 TCCTCAAAATCAGGGGATGCAA 59.957 45.455 0.00 0.00 32.92 4.08
39 40 2.429610 CCTCAAAATCAGGGGATGCAAG 59.570 50.000 0.00 0.00 32.92 4.01
40 41 3.094572 CTCAAAATCAGGGGATGCAAGT 58.905 45.455 0.00 0.00 32.92 3.16
41 42 3.509442 TCAAAATCAGGGGATGCAAGTT 58.491 40.909 0.00 0.00 32.92 2.66
42 43 4.671831 TCAAAATCAGGGGATGCAAGTTA 58.328 39.130 0.00 0.00 32.92 2.24
43 44 5.083122 TCAAAATCAGGGGATGCAAGTTAA 58.917 37.500 0.00 0.00 32.92 2.01
44 45 5.721000 TCAAAATCAGGGGATGCAAGTTAAT 59.279 36.000 0.00 0.00 32.92 1.40
51 52 7.406916 TCAGGGGATGCAAGTTAATTAGTTAA 58.593 34.615 0.00 0.00 0.00 2.01
96 97 7.337184 CGTAGGCTCTTCATAGATGTAGGATTA 59.663 40.741 0.00 0.00 0.00 1.75
109 110 5.018539 TGTAGGATTATCCTTGTGGAACG 57.981 43.478 19.79 0.00 46.91 3.95
117 118 1.376037 CTTGTGGAACGGAGGGAGC 60.376 63.158 0.00 0.00 42.39 4.70
126 127 1.794714 ACGGAGGGAGCATCATACTT 58.205 50.000 0.00 0.00 36.25 2.24
139 140 2.802719 TCATACTTTTTGAGGGGGTGC 58.197 47.619 0.00 0.00 0.00 5.01
149 150 0.992695 GAGGGGGTGCCTTTAAGAGT 59.007 55.000 0.00 0.00 0.00 3.24
151 152 0.696501 GGGGGTGCCTTTAAGAGTGA 59.303 55.000 0.00 0.00 0.00 3.41
182 183 6.508777 TGATGAACCATGTATGCATCATTTG 58.491 36.000 0.19 3.63 40.05 2.32
187 188 6.982160 ACCATGTATGCATCATTTGGTTAT 57.018 33.333 0.19 0.00 31.28 1.89
189 190 6.015180 ACCATGTATGCATCATTTGGTTATCC 60.015 38.462 0.19 0.00 31.28 2.59
190 191 6.015265 CCATGTATGCATCATTTGGTTATCCA 60.015 38.462 0.19 0.00 36.07 3.41
191 192 7.310175 CCATGTATGCATCATTTGGTTATCCAT 60.310 37.037 0.19 0.00 37.07 3.41
192 193 8.741841 CATGTATGCATCATTTGGTTATCCATA 58.258 33.333 0.19 0.00 37.07 2.74
193 194 8.703378 TGTATGCATCATTTGGTTATCCATAA 57.297 30.769 0.19 0.00 43.91 1.90
194 195 8.575589 TGTATGCATCATTTGGTTATCCATAAC 58.424 33.333 0.19 1.36 43.91 1.89
195 196 7.600231 ATGCATCATTTGGTTATCCATAACA 57.400 32.000 10.83 0.00 43.33 2.41
196 197 7.600231 TGCATCATTTGGTTATCCATAACAT 57.400 32.000 10.83 0.00 43.33 2.71
197 198 7.435305 TGCATCATTTGGTTATCCATAACATG 58.565 34.615 10.83 6.79 43.33 3.21
198 199 7.287235 TGCATCATTTGGTTATCCATAACATGA 59.713 33.333 0.00 10.85 43.33 3.07
199 200 7.811236 GCATCATTTGGTTATCCATAACATGAG 59.189 37.037 0.00 7.20 43.33 2.90
200 201 8.853126 CATCATTTGGTTATCCATAACATGAGT 58.147 33.333 0.00 0.00 43.33 3.41
201 202 8.224389 TCATTTGGTTATCCATAACATGAGTG 57.776 34.615 0.00 0.00 43.33 3.51
202 203 6.449635 TTTGGTTATCCATAACATGAGTGC 57.550 37.500 0.00 0.00 43.33 4.40
203 204 4.126437 TGGTTATCCATAACATGAGTGCG 58.874 43.478 0.00 0.00 43.33 5.34
204 205 3.498397 GGTTATCCATAACATGAGTGCGG 59.502 47.826 0.00 0.00 43.33 5.69
205 206 1.597742 ATCCATAACATGAGTGCGGC 58.402 50.000 0.00 0.00 0.00 6.53
206 207 0.809636 TCCATAACATGAGTGCGGCG 60.810 55.000 0.51 0.51 0.00 6.46
207 208 1.089481 CCATAACATGAGTGCGGCGT 61.089 55.000 9.37 0.00 0.00 5.68
208 209 0.726827 CATAACATGAGTGCGGCGTT 59.273 50.000 9.37 0.00 0.00 4.84
209 210 1.130373 CATAACATGAGTGCGGCGTTT 59.870 47.619 9.37 0.00 0.00 3.60
210 211 1.231221 TAACATGAGTGCGGCGTTTT 58.769 45.000 9.37 0.00 0.00 2.43
211 212 0.317770 AACATGAGTGCGGCGTTTTG 60.318 50.000 9.37 0.89 0.00 2.44
212 213 1.442520 CATGAGTGCGGCGTTTTGG 60.443 57.895 9.37 0.00 0.00 3.28
213 214 1.896660 ATGAGTGCGGCGTTTTGGT 60.897 52.632 9.37 0.00 0.00 3.67
214 215 2.051345 GAGTGCGGCGTTTTGGTG 60.051 61.111 9.37 0.00 0.00 4.17
215 216 4.264638 AGTGCGGCGTTTTGGTGC 62.265 61.111 9.37 0.00 0.00 5.01
220 221 4.662961 GGCGTTTTGGTGCCCAGC 62.663 66.667 0.00 0.00 45.73 4.85
221 222 4.662961 GCGTTTTGGTGCCCAGCC 62.663 66.667 0.00 0.00 33.81 4.85
222 223 2.912025 CGTTTTGGTGCCCAGCCT 60.912 61.111 0.00 0.00 33.81 4.58
223 224 2.919494 CGTTTTGGTGCCCAGCCTC 61.919 63.158 0.00 0.00 33.81 4.70
224 225 1.832167 GTTTTGGTGCCCAGCCTCA 60.832 57.895 0.00 0.00 33.81 3.86
225 226 1.155859 TTTTGGTGCCCAGCCTCAT 59.844 52.632 0.00 0.00 33.81 2.90
226 227 0.899717 TTTTGGTGCCCAGCCTCATC 60.900 55.000 0.00 0.00 33.81 2.92
227 228 1.792757 TTTGGTGCCCAGCCTCATCT 61.793 55.000 0.00 0.00 33.81 2.90
228 229 2.124403 GGTGCCCAGCCTCATCTG 60.124 66.667 0.00 0.00 0.00 2.90
229 230 2.827642 GTGCCCAGCCTCATCTGC 60.828 66.667 0.00 0.00 32.87 4.26
230 231 3.332385 TGCCCAGCCTCATCTGCA 61.332 61.111 0.00 0.00 32.87 4.41
231 232 2.827642 GCCCAGCCTCATCTGCAC 60.828 66.667 0.00 0.00 32.87 4.57
232 233 2.124403 CCCAGCCTCATCTGCACC 60.124 66.667 0.00 0.00 32.87 5.01
233 234 2.677289 CCCAGCCTCATCTGCACCT 61.677 63.158 0.00 0.00 32.87 4.00
234 235 1.451567 CCAGCCTCATCTGCACCTG 60.452 63.158 0.00 0.00 32.87 4.00
235 236 1.451567 CAGCCTCATCTGCACCTGG 60.452 63.158 0.00 0.00 0.00 4.45
236 237 1.922369 AGCCTCATCTGCACCTGGT 60.922 57.895 0.00 0.00 0.00 4.00
237 238 1.451028 GCCTCATCTGCACCTGGTC 60.451 63.158 0.00 0.00 0.00 4.02
238 239 1.985614 CCTCATCTGCACCTGGTCA 59.014 57.895 0.00 0.00 0.00 4.02
239 240 0.107800 CCTCATCTGCACCTGGTCAG 60.108 60.000 15.74 15.74 0.00 3.51
240 241 0.900421 CTCATCTGCACCTGGTCAGA 59.100 55.000 22.45 22.45 42.72 3.27
241 242 1.277273 CTCATCTGCACCTGGTCAGAA 59.723 52.381 23.39 13.05 41.96 3.02
242 243 1.699083 TCATCTGCACCTGGTCAGAAA 59.301 47.619 23.39 15.83 41.96 2.52
243 244 2.106338 TCATCTGCACCTGGTCAGAAAA 59.894 45.455 23.39 15.59 41.96 2.29
244 245 2.727123 TCTGCACCTGGTCAGAAAAA 57.273 45.000 19.77 4.72 36.50 1.94
245 246 3.228188 TCTGCACCTGGTCAGAAAAAT 57.772 42.857 19.77 0.00 36.50 1.82
246 247 3.149196 TCTGCACCTGGTCAGAAAAATC 58.851 45.455 19.77 0.00 36.50 2.17
247 248 2.886523 CTGCACCTGGTCAGAAAAATCA 59.113 45.455 16.48 0.00 32.26 2.57
248 249 3.295093 TGCACCTGGTCAGAAAAATCAA 58.705 40.909 0.00 0.00 0.00 2.57
249 250 3.703556 TGCACCTGGTCAGAAAAATCAAA 59.296 39.130 0.00 0.00 0.00 2.69
250 251 4.161189 TGCACCTGGTCAGAAAAATCAAAA 59.839 37.500 0.00 0.00 0.00 2.44
251 252 4.507756 GCACCTGGTCAGAAAAATCAAAAC 59.492 41.667 0.00 0.00 0.00 2.43
252 253 5.659463 CACCTGGTCAGAAAAATCAAAACA 58.341 37.500 0.00 0.00 0.00 2.83
253 254 6.105333 CACCTGGTCAGAAAAATCAAAACAA 58.895 36.000 0.00 0.00 0.00 2.83
254 255 6.593382 CACCTGGTCAGAAAAATCAAAACAAA 59.407 34.615 0.00 0.00 0.00 2.83
255 256 7.280652 CACCTGGTCAGAAAAATCAAAACAAAT 59.719 33.333 0.00 0.00 0.00 2.32
256 257 8.482128 ACCTGGTCAGAAAAATCAAAACAAATA 58.518 29.630 0.00 0.00 0.00 1.40
257 258 9.492973 CCTGGTCAGAAAAATCAAAACAAATAT 57.507 29.630 0.00 0.00 0.00 1.28
307 308 8.755696 TTTTTGTGTGGTAGATAATTTGATGC 57.244 30.769 0.00 0.00 0.00 3.91
308 309 5.733226 TGTGTGGTAGATAATTTGATGCG 57.267 39.130 0.00 0.00 0.00 4.73
309 310 5.182487 TGTGTGGTAGATAATTTGATGCGT 58.818 37.500 0.00 0.00 0.00 5.24
310 311 5.064579 TGTGTGGTAGATAATTTGATGCGTG 59.935 40.000 0.00 0.00 0.00 5.34
311 312 5.293324 GTGTGGTAGATAATTTGATGCGTGA 59.707 40.000 0.00 0.00 0.00 4.35
312 313 5.523552 TGTGGTAGATAATTTGATGCGTGAG 59.476 40.000 0.00 0.00 0.00 3.51
313 314 5.050091 GTGGTAGATAATTTGATGCGTGAGG 60.050 44.000 0.00 0.00 0.00 3.86
314 315 5.057149 GGTAGATAATTTGATGCGTGAGGT 58.943 41.667 0.00 0.00 0.00 3.85
315 316 5.527582 GGTAGATAATTTGATGCGTGAGGTT 59.472 40.000 0.00 0.00 0.00 3.50
316 317 6.038271 GGTAGATAATTTGATGCGTGAGGTTT 59.962 38.462 0.00 0.00 0.00 3.27
317 318 5.883661 AGATAATTTGATGCGTGAGGTTTG 58.116 37.500 0.00 0.00 0.00 2.93
318 319 2.352503 ATTTGATGCGTGAGGTTTGC 57.647 45.000 0.00 0.00 0.00 3.68
319 320 1.317613 TTTGATGCGTGAGGTTTGCT 58.682 45.000 0.00 0.00 0.00 3.91
320 321 0.874390 TTGATGCGTGAGGTTTGCTC 59.126 50.000 0.00 0.00 0.00 4.26
321 322 0.955428 TGATGCGTGAGGTTTGCTCC 60.955 55.000 0.00 0.00 0.00 4.70
322 323 0.955428 GATGCGTGAGGTTTGCTCCA 60.955 55.000 0.00 0.00 0.00 3.86
323 324 0.537143 ATGCGTGAGGTTTGCTCCAA 60.537 50.000 0.00 0.00 0.00 3.53
324 325 0.537143 TGCGTGAGGTTTGCTCCAAT 60.537 50.000 0.00 0.00 0.00 3.16
325 326 0.598065 GCGTGAGGTTTGCTCCAATT 59.402 50.000 0.00 0.00 0.00 2.32
326 327 1.000274 GCGTGAGGTTTGCTCCAATTT 60.000 47.619 0.00 0.00 0.00 1.82
327 328 2.545742 GCGTGAGGTTTGCTCCAATTTT 60.546 45.455 0.00 0.00 0.00 1.82
328 329 3.716601 CGTGAGGTTTGCTCCAATTTTT 58.283 40.909 0.00 0.00 0.00 1.94
329 330 4.794655 GCGTGAGGTTTGCTCCAATTTTTA 60.795 41.667 0.00 0.00 0.00 1.52
330 331 4.917415 CGTGAGGTTTGCTCCAATTTTTAG 59.083 41.667 0.00 0.00 0.00 1.85
331 332 5.278266 CGTGAGGTTTGCTCCAATTTTTAGA 60.278 40.000 0.00 0.00 0.00 2.10
332 333 6.570378 CGTGAGGTTTGCTCCAATTTTTAGAT 60.570 38.462 0.00 0.00 0.00 1.98
333 334 6.808704 GTGAGGTTTGCTCCAATTTTTAGATC 59.191 38.462 0.00 0.00 0.00 2.75
334 335 6.493115 TGAGGTTTGCTCCAATTTTTAGATCA 59.507 34.615 0.00 0.00 0.00 2.92
335 336 7.178983 TGAGGTTTGCTCCAATTTTTAGATCAT 59.821 33.333 0.00 0.00 0.00 2.45
336 337 7.910584 AGGTTTGCTCCAATTTTTAGATCATT 58.089 30.769 0.00 0.00 0.00 2.57
337 338 8.377799 AGGTTTGCTCCAATTTTTAGATCATTT 58.622 29.630 0.00 0.00 0.00 2.32
338 339 8.445493 GGTTTGCTCCAATTTTTAGATCATTTG 58.555 33.333 0.00 0.00 0.00 2.32
339 340 8.445493 GTTTGCTCCAATTTTTAGATCATTTGG 58.555 33.333 0.00 0.00 35.93 3.28
340 341 7.479352 TGCTCCAATTTTTAGATCATTTGGA 57.521 32.000 0.00 1.67 40.08 3.53
341 342 7.322664 TGCTCCAATTTTTAGATCATTTGGAC 58.677 34.615 0.00 0.00 38.10 4.02
342 343 7.039152 TGCTCCAATTTTTAGATCATTTGGACA 60.039 33.333 0.00 1.90 38.10 4.02
343 344 7.983484 GCTCCAATTTTTAGATCATTTGGACAT 59.017 33.333 0.00 0.00 38.10 3.06
344 345 9.525409 CTCCAATTTTTAGATCATTTGGACATC 57.475 33.333 0.00 0.00 38.10 3.06
345 346 9.258629 TCCAATTTTTAGATCATTTGGACATCT 57.741 29.630 0.00 0.00 38.10 2.90
346 347 9.309516 CCAATTTTTAGATCATTTGGACATCTG 57.690 33.333 0.00 0.00 36.55 2.90
349 350 6.932356 TTTAGATCATTTGGACATCTGAGC 57.068 37.500 0.00 0.00 0.00 4.26
350 351 4.498894 AGATCATTTGGACATCTGAGCA 57.501 40.909 0.00 0.00 0.00 4.26
351 352 4.452825 AGATCATTTGGACATCTGAGCAG 58.547 43.478 0.00 0.00 0.00 4.24
352 353 2.362736 TCATTTGGACATCTGAGCAGC 58.637 47.619 0.00 0.00 0.00 5.25
353 354 2.026542 TCATTTGGACATCTGAGCAGCT 60.027 45.455 0.00 0.00 0.00 4.24
354 355 2.105006 TTTGGACATCTGAGCAGCTC 57.895 50.000 16.21 16.21 0.00 4.09
355 356 1.273759 TTGGACATCTGAGCAGCTCT 58.726 50.000 23.15 2.04 0.00 4.09
356 357 0.822811 TGGACATCTGAGCAGCTCTC 59.177 55.000 23.15 11.57 42.23 3.20
366 367 3.279853 GAGCAGCTCTCAACAAAAAGG 57.720 47.619 15.78 0.00 41.51 3.11
367 368 2.880890 GAGCAGCTCTCAACAAAAAGGA 59.119 45.455 15.78 0.00 41.51 3.36
368 369 2.620585 AGCAGCTCTCAACAAAAAGGAC 59.379 45.455 0.00 0.00 0.00 3.85
369 370 2.358898 GCAGCTCTCAACAAAAAGGACA 59.641 45.455 0.00 0.00 0.00 4.02
370 371 3.181487 GCAGCTCTCAACAAAAAGGACAA 60.181 43.478 0.00 0.00 0.00 3.18
371 372 4.677779 GCAGCTCTCAACAAAAAGGACAAA 60.678 41.667 0.00 0.00 0.00 2.83
372 373 5.594926 CAGCTCTCAACAAAAAGGACAAAT 58.405 37.500 0.00 0.00 0.00 2.32
373 374 5.689068 CAGCTCTCAACAAAAAGGACAAATC 59.311 40.000 0.00 0.00 0.00 2.17
374 375 4.676924 GCTCTCAACAAAAAGGACAAATCG 59.323 41.667 0.00 0.00 0.00 3.34
375 376 5.181690 TCTCAACAAAAAGGACAAATCGG 57.818 39.130 0.00 0.00 0.00 4.18
376 377 4.037446 TCTCAACAAAAAGGACAAATCGGG 59.963 41.667 0.00 0.00 0.00 5.14
377 378 3.702045 TCAACAAAAAGGACAAATCGGGT 59.298 39.130 0.00 0.00 0.00 5.28
378 379 4.048504 CAACAAAAAGGACAAATCGGGTC 58.951 43.478 0.00 0.00 34.52 4.46
379 380 3.292460 ACAAAAAGGACAAATCGGGTCA 58.708 40.909 0.00 0.00 37.00 4.02
380 381 3.317993 ACAAAAAGGACAAATCGGGTCAG 59.682 43.478 0.00 0.00 37.00 3.51
381 382 3.502123 AAAAGGACAAATCGGGTCAGA 57.498 42.857 0.00 0.00 37.00 3.27
382 383 3.502123 AAAGGACAAATCGGGTCAGAA 57.498 42.857 0.00 0.00 37.00 3.02
383 384 2.474410 AGGACAAATCGGGTCAGAAC 57.526 50.000 0.00 0.00 37.00 3.01
384 385 1.697432 AGGACAAATCGGGTCAGAACA 59.303 47.619 0.00 0.00 37.00 3.18
385 386 2.076863 GGACAAATCGGGTCAGAACAG 58.923 52.381 0.00 0.00 37.00 3.16
386 387 2.550208 GGACAAATCGGGTCAGAACAGT 60.550 50.000 0.00 0.00 37.00 3.55
387 388 2.480419 GACAAATCGGGTCAGAACAGTG 59.520 50.000 0.00 0.00 35.36 3.66
388 389 1.197721 CAAATCGGGTCAGAACAGTGC 59.802 52.381 0.00 0.00 0.00 4.40
389 390 0.670546 AATCGGGTCAGAACAGTGCG 60.671 55.000 0.00 0.00 0.00 5.34
390 391 1.816863 ATCGGGTCAGAACAGTGCGT 61.817 55.000 0.00 0.00 0.00 5.24
391 392 2.310233 CGGGTCAGAACAGTGCGTG 61.310 63.158 0.00 0.00 0.00 5.34
392 393 1.069090 GGGTCAGAACAGTGCGTGA 59.931 57.895 0.00 0.00 0.00 4.35
393 394 0.531974 GGGTCAGAACAGTGCGTGAA 60.532 55.000 0.00 0.00 0.00 3.18
394 395 0.582005 GGTCAGAACAGTGCGTGAAC 59.418 55.000 0.00 0.00 0.00 3.18
395 396 1.286501 GTCAGAACAGTGCGTGAACA 58.713 50.000 0.00 0.00 0.00 3.18
396 397 1.663643 GTCAGAACAGTGCGTGAACAA 59.336 47.619 0.00 0.00 0.00 2.83
397 398 2.287915 GTCAGAACAGTGCGTGAACAAT 59.712 45.455 0.00 0.00 0.00 2.71
398 399 3.493129 GTCAGAACAGTGCGTGAACAATA 59.507 43.478 0.00 0.00 0.00 1.90
399 400 4.025229 GTCAGAACAGTGCGTGAACAATAA 60.025 41.667 0.00 0.00 0.00 1.40
400 401 4.572795 TCAGAACAGTGCGTGAACAATAAA 59.427 37.500 0.00 0.00 0.00 1.40
401 402 4.670621 CAGAACAGTGCGTGAACAATAAAC 59.329 41.667 0.00 0.00 0.00 2.01
402 403 4.334203 AGAACAGTGCGTGAACAATAAACA 59.666 37.500 0.00 0.00 0.00 2.83
403 404 4.829064 ACAGTGCGTGAACAATAAACAT 57.171 36.364 0.00 0.00 0.00 2.71
404 405 5.181690 ACAGTGCGTGAACAATAAACATT 57.818 34.783 0.00 0.00 0.00 2.71
405 406 5.587289 ACAGTGCGTGAACAATAAACATTT 58.413 33.333 0.00 0.00 0.00 2.32
406 407 6.039616 ACAGTGCGTGAACAATAAACATTTT 58.960 32.000 0.00 0.00 0.00 1.82
407 408 6.533367 ACAGTGCGTGAACAATAAACATTTTT 59.467 30.769 0.00 0.00 0.00 1.94
408 409 7.702772 ACAGTGCGTGAACAATAAACATTTTTA 59.297 29.630 0.00 0.00 0.00 1.52
409 410 7.995998 CAGTGCGTGAACAATAAACATTTTTAC 59.004 33.333 0.00 0.00 29.77 2.01
410 411 7.702772 AGTGCGTGAACAATAAACATTTTTACA 59.297 29.630 0.00 0.00 29.77 2.41
411 412 7.995998 GTGCGTGAACAATAAACATTTTTACAG 59.004 33.333 0.00 0.00 29.77 2.74
412 413 7.915923 TGCGTGAACAATAAACATTTTTACAGA 59.084 29.630 0.00 0.00 29.77 3.41
413 414 8.205297 GCGTGAACAATAAACATTTTTACAGAC 58.795 33.333 0.00 0.00 29.77 3.51
414 415 8.687301 CGTGAACAATAAACATTTTTACAGACC 58.313 33.333 0.00 0.00 29.77 3.85
415 416 8.974408 GTGAACAATAAACATTTTTACAGACCC 58.026 33.333 0.00 0.00 29.77 4.46
416 417 8.145122 TGAACAATAAACATTTTTACAGACCCC 58.855 33.333 0.00 0.00 29.77 4.95
417 418 6.683715 ACAATAAACATTTTTACAGACCCCG 58.316 36.000 0.00 0.00 29.77 5.73
418 419 6.490721 ACAATAAACATTTTTACAGACCCCGA 59.509 34.615 0.00 0.00 29.77 5.14
419 420 7.014422 ACAATAAACATTTTTACAGACCCCGAA 59.986 33.333 0.00 0.00 29.77 4.30
420 421 7.712204 ATAAACATTTTTACAGACCCCGAAT 57.288 32.000 0.00 0.00 29.77 3.34
421 422 6.413783 AAACATTTTTACAGACCCCGAATT 57.586 33.333 0.00 0.00 0.00 2.17
422 423 6.413783 AACATTTTTACAGACCCCGAATTT 57.586 33.333 0.00 0.00 0.00 1.82
423 424 7.527568 AACATTTTTACAGACCCCGAATTTA 57.472 32.000 0.00 0.00 0.00 1.40
424 425 7.712204 ACATTTTTACAGACCCCGAATTTAT 57.288 32.000 0.00 0.00 0.00 1.40
425 426 8.129496 ACATTTTTACAGACCCCGAATTTATT 57.871 30.769 0.00 0.00 0.00 1.40
426 427 8.590204 ACATTTTTACAGACCCCGAATTTATTT 58.410 29.630 0.00 0.00 0.00 1.40
427 428 9.430623 CATTTTTACAGACCCCGAATTTATTTT 57.569 29.630 0.00 0.00 0.00 1.82
444 445 4.481195 TTTTTGCCGAGAGCTGCT 57.519 50.000 0.00 0.00 44.23 4.24
445 446 2.247790 TTTTTGCCGAGAGCTGCTC 58.752 52.632 21.72 21.72 44.23 4.26
446 447 0.534877 TTTTTGCCGAGAGCTGCTCA 60.535 50.000 29.49 8.15 44.15 4.26
447 448 0.952497 TTTTGCCGAGAGCTGCTCAG 60.952 55.000 29.49 21.79 44.15 3.35
448 449 1.820010 TTTGCCGAGAGCTGCTCAGA 61.820 55.000 29.49 7.15 44.15 3.27
449 450 1.611474 TTGCCGAGAGCTGCTCAGAT 61.611 55.000 29.49 10.97 44.15 2.90
450 451 1.592131 GCCGAGAGCTGCTCAGATG 60.592 63.158 29.49 16.14 44.15 2.90
451 452 1.815196 CCGAGAGCTGCTCAGATGT 59.185 57.895 29.49 10.20 44.15 3.06
452 453 0.175302 CCGAGAGCTGCTCAGATGTT 59.825 55.000 29.49 9.44 44.15 2.71
453 454 1.558741 CGAGAGCTGCTCAGATGTTC 58.441 55.000 29.49 16.52 44.15 3.18
454 455 1.135170 CGAGAGCTGCTCAGATGTTCA 60.135 52.381 29.49 0.00 44.15 3.18
455 456 2.673326 CGAGAGCTGCTCAGATGTTCAA 60.673 50.000 29.49 0.00 44.15 2.69
456 457 3.332919 GAGAGCTGCTCAGATGTTCAAA 58.667 45.455 29.49 0.00 43.38 2.69
457 458 3.940221 GAGAGCTGCTCAGATGTTCAAAT 59.060 43.478 29.49 5.90 43.38 2.32
458 459 3.690139 AGAGCTGCTCAGATGTTCAAATG 59.310 43.478 29.49 0.00 32.06 2.32
459 460 3.682696 AGCTGCTCAGATGTTCAAATGA 58.317 40.909 0.00 0.00 0.00 2.57
460 461 4.270834 AGCTGCTCAGATGTTCAAATGAT 58.729 39.130 0.00 0.00 0.00 2.45
461 462 4.705507 AGCTGCTCAGATGTTCAAATGATT 59.294 37.500 0.00 0.00 0.00 2.57
462 463 5.185249 AGCTGCTCAGATGTTCAAATGATTT 59.815 36.000 0.00 0.00 0.00 2.17
463 464 5.288712 GCTGCTCAGATGTTCAAATGATTTG 59.711 40.000 11.54 11.54 41.96 2.32
478 479 8.967218 TCAAATGATTTGAAAGTTGAATCGAAC 58.033 29.630 17.50 0.00 45.94 3.95
479 480 7.873739 AATGATTTGAAAGTTGAATCGAACC 57.126 32.000 0.00 0.00 33.55 3.62
480 481 6.633500 TGATTTGAAAGTTGAATCGAACCT 57.367 33.333 0.00 0.00 33.55 3.50
481 482 6.668323 TGATTTGAAAGTTGAATCGAACCTC 58.332 36.000 0.00 0.00 33.55 3.85
482 483 4.725556 TTGAAAGTTGAATCGAACCTCG 57.274 40.909 0.00 0.00 42.10 4.63
483 484 3.724374 TGAAAGTTGAATCGAACCTCGT 58.276 40.909 0.00 0.00 41.35 4.18
484 485 3.493129 TGAAAGTTGAATCGAACCTCGTG 59.507 43.478 0.00 0.00 41.35 4.35
485 486 1.429463 AGTTGAATCGAACCTCGTGC 58.571 50.000 0.00 0.00 41.35 5.34
486 487 1.144969 GTTGAATCGAACCTCGTGCA 58.855 50.000 0.00 0.00 41.35 4.57
487 488 1.732259 GTTGAATCGAACCTCGTGCAT 59.268 47.619 0.00 0.00 41.35 3.96
488 489 1.640428 TGAATCGAACCTCGTGCATC 58.360 50.000 0.00 0.00 41.35 3.91
489 490 1.067213 TGAATCGAACCTCGTGCATCA 60.067 47.619 0.00 0.00 41.35 3.07
490 491 1.999735 GAATCGAACCTCGTGCATCAA 59.000 47.619 0.00 0.00 41.35 2.57
491 492 2.093306 ATCGAACCTCGTGCATCAAA 57.907 45.000 0.00 0.00 41.35 2.69
492 493 2.093306 TCGAACCTCGTGCATCAAAT 57.907 45.000 0.00 0.00 41.35 2.32
493 494 2.422597 TCGAACCTCGTGCATCAAATT 58.577 42.857 0.00 0.00 41.35 1.82
494 495 3.591023 TCGAACCTCGTGCATCAAATTA 58.409 40.909 0.00 0.00 41.35 1.40
495 496 4.188462 TCGAACCTCGTGCATCAAATTAT 58.812 39.130 0.00 0.00 41.35 1.28
496 497 4.270084 TCGAACCTCGTGCATCAAATTATC 59.730 41.667 0.00 0.00 41.35 1.75
497 498 4.271049 CGAACCTCGTGCATCAAATTATCT 59.729 41.667 0.00 0.00 34.72 1.98
498 499 5.462068 CGAACCTCGTGCATCAAATTATCTA 59.538 40.000 0.00 0.00 34.72 1.98
499 500 6.562270 CGAACCTCGTGCATCAAATTATCTAC 60.562 42.308 0.00 0.00 34.72 2.59
500 501 5.057149 ACCTCGTGCATCAAATTATCTACC 58.943 41.667 0.00 0.00 0.00 3.18
501 502 5.056480 CCTCGTGCATCAAATTATCTACCA 58.944 41.667 0.00 0.00 0.00 3.25
502 503 5.050091 CCTCGTGCATCAAATTATCTACCAC 60.050 44.000 0.00 0.00 0.00 4.16
503 504 5.423886 TCGTGCATCAAATTATCTACCACA 58.576 37.500 0.00 0.00 0.00 4.17
504 505 6.054941 TCGTGCATCAAATTATCTACCACAT 58.945 36.000 0.00 0.00 0.00 3.21
505 506 7.213678 TCGTGCATCAAATTATCTACCACATA 58.786 34.615 0.00 0.00 0.00 2.29
506 507 7.713073 TCGTGCATCAAATTATCTACCACATAA 59.287 33.333 0.00 0.00 0.00 1.90
507 508 8.341903 CGTGCATCAAATTATCTACCACATAAA 58.658 33.333 0.00 0.00 0.00 1.40
568 569 3.257133 TTTTTCCTCAGGGCGGGT 58.743 55.556 0.00 0.00 0.00 5.28
569 570 1.228429 TTTTTCCTCAGGGCGGGTG 60.228 57.895 0.00 0.00 0.00 4.61
570 571 3.860930 TTTTCCTCAGGGCGGGTGC 62.861 63.158 0.00 0.00 41.71 5.01
687 698 2.082231 GCTGACTAGTGACCACTCGTA 58.918 52.381 0.00 0.00 42.54 3.43
710 721 1.671742 CAAGACGTACCAGCCACCT 59.328 57.895 0.00 0.00 0.00 4.00
730 741 1.352017 TCCATCAACACTGCTCACCAT 59.648 47.619 0.00 0.00 0.00 3.55
796 807 2.745968 ACCACAAGGAAAAAGAAGCCA 58.254 42.857 0.00 0.00 38.69 4.75
805 816 1.318576 AAAAGAAGCCAACCCTGTCG 58.681 50.000 0.00 0.00 0.00 4.35
820 831 2.997315 TCGCAGCTAGGCACCACT 60.997 61.111 0.00 0.00 0.00 4.00
831 842 2.629656 GCACCACTGCCGCTTGATT 61.630 57.895 0.00 0.00 37.45 2.57
838 849 1.203052 ACTGCCGCTTGATTGAAATGG 59.797 47.619 0.00 0.00 0.00 3.16
864 879 1.522668 CACCATGTGTCCATGTCGTT 58.477 50.000 2.38 0.00 45.83 3.85
894 909 1.639280 GGTGGTTGCGCATTATTTGG 58.361 50.000 12.75 0.00 0.00 3.28
896 911 2.353208 GGTGGTTGCGCATTATTTGGAA 60.353 45.455 12.75 0.00 0.00 3.53
904 919 3.983344 GCGCATTATTTGGAACCATCATC 59.017 43.478 0.30 0.00 0.00 2.92
917 932 5.397221 GGAACCATCATCTTCATCTCCTTCA 60.397 44.000 0.00 0.00 0.00 3.02
918 933 5.705397 ACCATCATCTTCATCTCCTTCAA 57.295 39.130 0.00 0.00 0.00 2.69
927 942 0.674895 ATCTCCTTCAAGCACGGCAC 60.675 55.000 0.00 0.00 0.00 5.01
934 949 0.608130 TCAAGCACGGCACATACTCT 59.392 50.000 0.00 0.00 0.00 3.24
939 954 3.223435 AGCACGGCACATACTCTACTAT 58.777 45.455 0.00 0.00 0.00 2.12
981 1003 1.065928 CCCTACGATCTGCGACACC 59.934 63.158 0.00 0.00 44.57 4.16
984 1006 0.867753 CTACGATCTGCGACACCTGC 60.868 60.000 0.00 0.00 44.57 4.85
991 1013 2.899838 GCGACACCTGCACACCAA 60.900 61.111 0.00 0.00 0.00 3.67
1198 1280 6.018343 GTGCTAACTATTCTTCTTGATGAGCC 60.018 42.308 0.00 0.00 0.00 4.70
1202 1284 2.119801 TTCTTCTTGATGAGCCTGCC 57.880 50.000 0.00 0.00 0.00 4.85
1262 1344 1.228894 TGGTCCTCTTCGGTGAGCT 60.229 57.895 0.00 0.00 33.02 4.09
1263 1345 1.216710 GGTCCTCTTCGGTGAGCTG 59.783 63.158 0.00 0.00 33.02 4.24
1264 1346 1.251527 GGTCCTCTTCGGTGAGCTGA 61.252 60.000 0.00 0.00 33.02 4.26
1276 1358 0.321034 TGAGCTGAGCACCACACATC 60.321 55.000 7.39 0.00 0.00 3.06
1291 1373 4.701651 CCACACATCCACATTCACATACTT 59.298 41.667 0.00 0.00 0.00 2.24
1305 1406 8.853345 CATTCACATACTTACAAAATGAAGCAC 58.147 33.333 0.00 0.00 0.00 4.40
1307 1408 6.714810 TCACATACTTACAAAATGAAGCACCT 59.285 34.615 0.00 0.00 0.00 4.00
1337 1438 0.179116 CCATGGCTCACTCTCACTCG 60.179 60.000 0.00 0.00 0.00 4.18
1377 1478 4.700700 TCTAATGTCCTCATGCATGTCTG 58.299 43.478 25.43 16.12 34.19 3.51
1857 2011 6.715264 CCAAGGTTTAGTTATGACTGGTTTCT 59.285 38.462 0.00 0.00 36.60 2.52
1915 2078 8.330302 TGTAAACGTTTTGTAATCTTTTCTGC 57.670 30.769 20.19 0.00 0.00 4.26
1935 2098 6.165577 TCTGCCAAGAAATTCAATAAAAGCC 58.834 36.000 0.00 0.00 0.00 4.35
1999 2162 4.503741 AATCAACATCACACGAAAAGGG 57.496 40.909 0.00 0.00 0.00 3.95
2000 2163 2.925724 TCAACATCACACGAAAAGGGT 58.074 42.857 0.00 0.00 36.52 4.34
2006 2169 4.383602 CACGAAAAGGGTGCCGCG 62.384 66.667 0.00 0.00 0.00 6.46
2008 2171 2.739287 CGAAAAGGGTGCCGCGTA 60.739 61.111 4.92 0.00 0.00 4.42
2009 2172 2.736682 CGAAAAGGGTGCCGCGTAG 61.737 63.158 4.92 0.00 0.00 3.51
2010 2173 2.359478 AAAAGGGTGCCGCGTAGG 60.359 61.111 4.92 0.00 44.97 3.18
2032 2545 1.135972 CGTAGCTTCATGGTGTGCAAC 60.136 52.381 0.00 0.00 37.35 4.17
2050 2563 5.631512 GTGCAACAGTAGAACTAGAAGACTG 59.368 44.000 0.00 6.98 42.58 3.51
2060 2573 5.534654 AGAACTAGAAGACTGCTATGCTAGG 59.465 44.000 0.00 0.00 31.90 3.02
2156 2849 7.118245 GGCAAAATTCACTCCATTTAAGGAAAG 59.882 37.037 0.00 0.00 37.20 2.62
2293 2986 9.610705 ATGTTCATAGAGATATATGCCACATTC 57.389 33.333 0.00 0.00 35.44 2.67
2304 2997 4.719026 ATGCCACATTCTCACAGGATAT 57.281 40.909 0.00 0.00 0.00 1.63
2305 2998 3.812262 TGCCACATTCTCACAGGATATG 58.188 45.455 0.00 0.00 0.00 1.78
2399 4086 7.665561 ACAACTTTAGAAGAAAGAGATGCTC 57.334 36.000 4.14 0.00 0.00 4.26
2422 4109 5.179368 TCGGACAGTTCAAAATTCATGTCTC 59.821 40.000 0.00 0.00 37.71 3.36
2440 4127 6.961360 TGTCTCCTACTGATATGTACAAGG 57.039 41.667 0.00 0.00 0.00 3.61
2445 4132 4.345257 CCTACTGATATGTACAAGGTGGCT 59.655 45.833 0.00 0.00 0.00 4.75
2462 4149 3.308323 GTGGCTTGATCTTTCGATGAGAC 59.692 47.826 1.57 0.00 0.00 3.36
2469 4156 5.752712 TGATCTTTCGATGAGACAGTATCG 58.247 41.667 0.00 0.00 45.49 2.92
2478 4165 6.406018 CGATGAGACAGTATCGATTTTGTTG 58.594 40.000 1.71 0.00 46.67 3.33
2489 4176 4.315803 TCGATTTTGTTGGAGGAGACTTC 58.684 43.478 0.00 0.00 44.43 3.01
2507 4194 1.058438 CGACGACTCGACTACACCG 59.942 63.158 5.20 0.00 43.06 4.94
2512 4199 1.129998 CGACTCGACTACACCGAACAT 59.870 52.381 0.00 0.00 35.48 2.71
2524 4211 2.083774 ACCGAACATTTGACGATGCAT 58.916 42.857 0.00 0.00 0.00 3.96
2538 4225 2.156504 CGATGCATCTTACCAATCGCTC 59.843 50.000 23.73 0.00 0.00 5.03
2539 4226 2.689553 TGCATCTTACCAATCGCTCA 57.310 45.000 0.00 0.00 0.00 4.26
2550 4237 0.320374 AATCGCTCAACCAACTCCGA 59.680 50.000 0.00 0.00 0.00 4.55
2623 4310 6.894654 TCAATCCCTATATGCAACCAAAGAAA 59.105 34.615 0.00 0.00 0.00 2.52
2647 4334 7.816945 ACAAGAAAGGATTTAAATGCAATCG 57.183 32.000 20.17 9.23 39.27 3.34
2740 4427 4.023878 TCGTCGAACCCAAACCTTAATTTG 60.024 41.667 0.00 0.00 38.96 2.32
2748 4435 4.506758 CCAAACCTTAATTTGATGCCCTG 58.493 43.478 3.59 0.00 41.28 4.45
2776 4463 4.874396 GGTATTTAAGGAGGGACAAACGAG 59.126 45.833 0.00 0.00 0.00 4.18
2777 4464 3.412237 TTTAAGGAGGGACAAACGAGG 57.588 47.619 0.00 0.00 0.00 4.63
2783 4470 0.618981 AGGGACAAACGAGGGGATTC 59.381 55.000 0.00 0.00 0.00 2.52
2788 4475 2.598787 AAACGAGGGGATTCGGCCA 61.599 57.895 2.24 0.00 44.57 5.36
2789 4476 2.536997 AAACGAGGGGATTCGGCCAG 62.537 60.000 2.24 0.00 44.57 4.85
2790 4477 4.918201 CGAGGGGATTCGGCCAGC 62.918 72.222 2.24 0.00 36.95 4.85
2791 4478 4.570874 GAGGGGATTCGGCCAGCC 62.571 72.222 2.24 0.00 0.00 4.85
2794 4481 4.440829 GGGATTCGGCCAGCCCAA 62.441 66.667 11.50 0.00 40.39 4.12
2795 4482 2.830370 GGATTCGGCCAGCCCAAG 60.830 66.667 2.24 0.00 0.00 3.61
2796 4483 2.272146 GATTCGGCCAGCCCAAGA 59.728 61.111 2.24 0.00 0.00 3.02
2797 4484 1.821332 GATTCGGCCAGCCCAAGAG 60.821 63.158 2.24 0.00 0.00 2.85
2798 4485 3.350031 ATTCGGCCAGCCCAAGAGG 62.350 63.158 2.24 0.00 39.47 3.69
2815 4502 3.805497 GGGGGTGGGGTCGAATCC 61.805 72.222 0.00 0.00 0.00 3.01
2816 4503 3.012722 GGGGTGGGGTCGAATCCA 61.013 66.667 8.14 6.19 0.00 3.41
2817 4504 2.608550 GGGGTGGGGTCGAATCCAA 61.609 63.158 9.25 0.00 34.47 3.53
2818 4505 1.613061 GGGTGGGGTCGAATCCAAT 59.387 57.895 9.25 0.00 34.47 3.16
2819 4506 0.465642 GGGTGGGGTCGAATCCAATC 60.466 60.000 9.25 5.73 34.47 2.67
2820 4507 0.546598 GGTGGGGTCGAATCCAATCT 59.453 55.000 9.25 0.00 34.47 2.40
2821 4508 1.064685 GGTGGGGTCGAATCCAATCTT 60.065 52.381 9.25 0.00 34.47 2.40
2822 4509 2.171870 GGTGGGGTCGAATCCAATCTTA 59.828 50.000 9.25 0.00 34.47 2.10
2823 4510 3.371166 GGTGGGGTCGAATCCAATCTTAA 60.371 47.826 9.25 0.00 34.47 1.85
2824 4511 3.877508 GTGGGGTCGAATCCAATCTTAAG 59.122 47.826 9.25 0.00 34.47 1.85
2825 4512 3.521937 TGGGGTCGAATCCAATCTTAAGT 59.478 43.478 1.63 0.00 0.00 2.24
2826 4513 4.127907 GGGGTCGAATCCAATCTTAAGTC 58.872 47.826 1.63 0.00 0.00 3.01
2827 4514 3.802685 GGGTCGAATCCAATCTTAAGTCG 59.197 47.826 1.63 2.84 0.00 4.18
2828 4515 3.802685 GGTCGAATCCAATCTTAAGTCGG 59.197 47.826 1.63 2.07 0.00 4.79
2829 4516 4.430908 GTCGAATCCAATCTTAAGTCGGT 58.569 43.478 1.63 0.00 0.00 4.69
2830 4517 4.503370 GTCGAATCCAATCTTAAGTCGGTC 59.497 45.833 1.63 0.00 0.00 4.79
2831 4518 4.401519 TCGAATCCAATCTTAAGTCGGTCT 59.598 41.667 1.63 0.00 0.00 3.85
2832 4519 4.740695 CGAATCCAATCTTAAGTCGGTCTC 59.259 45.833 1.63 3.10 0.00 3.36
2833 4520 4.674281 ATCCAATCTTAAGTCGGTCTCC 57.326 45.455 1.63 0.00 0.00 3.71
2834 4521 3.709587 TCCAATCTTAAGTCGGTCTCCT 58.290 45.455 1.63 0.00 0.00 3.69
2835 4522 4.094476 TCCAATCTTAAGTCGGTCTCCTT 58.906 43.478 1.63 0.00 0.00 3.36
2836 4523 4.530946 TCCAATCTTAAGTCGGTCTCCTTT 59.469 41.667 1.63 0.00 0.00 3.11
2837 4524 4.870991 CCAATCTTAAGTCGGTCTCCTTTC 59.129 45.833 1.63 0.00 0.00 2.62
2838 4525 5.337652 CCAATCTTAAGTCGGTCTCCTTTCT 60.338 44.000 1.63 0.00 0.00 2.52
2839 4526 6.127423 CCAATCTTAAGTCGGTCTCCTTTCTA 60.127 42.308 1.63 0.00 0.00 2.10
2840 4527 7.321153 CAATCTTAAGTCGGTCTCCTTTCTAA 58.679 38.462 1.63 0.00 0.00 2.10
2841 4528 6.906157 TCTTAAGTCGGTCTCCTTTCTAAA 57.094 37.500 1.63 0.00 0.00 1.85
2842 4529 7.294017 TCTTAAGTCGGTCTCCTTTCTAAAA 57.706 36.000 1.63 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.115199 AGGGTGGGCCGCTTCATC 62.115 66.667 17.99 0.00 31.04 2.92
1 2 4.115199 GAGGGTGGGCCGCTTCAT 62.115 66.667 17.99 0.00 36.29 2.57
7 8 2.499303 ATTTTGAGGAGGGTGGGCCG 62.499 60.000 0.00 0.00 34.97 6.13
8 9 0.684479 GATTTTGAGGAGGGTGGGCC 60.684 60.000 0.00 0.00 0.00 5.80
9 10 0.039618 TGATTTTGAGGAGGGTGGGC 59.960 55.000 0.00 0.00 0.00 5.36
10 11 1.341383 CCTGATTTTGAGGAGGGTGGG 60.341 57.143 0.00 0.00 31.48 4.61
11 12 1.341383 CCCTGATTTTGAGGAGGGTGG 60.341 57.143 0.00 0.00 40.46 4.61
12 13 1.341383 CCCCTGATTTTGAGGAGGGTG 60.341 57.143 0.00 0.00 43.44 4.61
13 14 1.002857 CCCCTGATTTTGAGGAGGGT 58.997 55.000 0.00 0.00 43.44 4.34
14 15 1.298953 TCCCCTGATTTTGAGGAGGG 58.701 55.000 0.00 0.00 44.43 4.30
15 16 2.941480 CATCCCCTGATTTTGAGGAGG 58.059 52.381 0.00 0.00 31.48 4.30
16 17 2.305009 GCATCCCCTGATTTTGAGGAG 58.695 52.381 0.00 0.00 31.48 3.69
17 18 1.640149 TGCATCCCCTGATTTTGAGGA 59.360 47.619 0.00 0.00 31.48 3.71
18 19 2.148446 TGCATCCCCTGATTTTGAGG 57.852 50.000 0.00 0.00 0.00 3.86
19 20 3.094572 ACTTGCATCCCCTGATTTTGAG 58.905 45.455 0.00 0.00 0.00 3.02
20 21 3.173953 ACTTGCATCCCCTGATTTTGA 57.826 42.857 0.00 0.00 0.00 2.69
21 22 3.967332 AACTTGCATCCCCTGATTTTG 57.033 42.857 0.00 0.00 0.00 2.44
22 23 6.625532 AATTAACTTGCATCCCCTGATTTT 57.374 33.333 0.00 0.00 0.00 1.82
23 24 6.897413 ACTAATTAACTTGCATCCCCTGATTT 59.103 34.615 0.00 0.00 0.00 2.17
24 25 6.435164 ACTAATTAACTTGCATCCCCTGATT 58.565 36.000 0.00 0.00 0.00 2.57
25 26 6.018433 ACTAATTAACTTGCATCCCCTGAT 57.982 37.500 0.00 0.00 0.00 2.90
26 27 5.450818 ACTAATTAACTTGCATCCCCTGA 57.549 39.130 0.00 0.00 0.00 3.86
27 28 7.556275 TCTTAACTAATTAACTTGCATCCCCTG 59.444 37.037 0.00 0.00 0.00 4.45
28 29 7.639378 TCTTAACTAATTAACTTGCATCCCCT 58.361 34.615 0.00 0.00 0.00 4.79
29 30 7.875327 TCTTAACTAATTAACTTGCATCCCC 57.125 36.000 0.00 0.00 0.00 4.81
51 52 7.787725 CCTACGAAGGCTAACATAATTTTCT 57.212 36.000 0.00 0.00 35.64 2.52
96 97 0.546747 TCCCTCCGTTCCACAAGGAT 60.547 55.000 0.00 0.00 45.26 3.24
102 103 1.153349 GATGCTCCCTCCGTTCCAC 60.153 63.158 0.00 0.00 0.00 4.02
109 110 4.526970 TCAAAAAGTATGATGCTCCCTCC 58.473 43.478 0.00 0.00 0.00 4.30
117 118 3.131046 GCACCCCCTCAAAAAGTATGATG 59.869 47.826 0.00 0.00 0.00 3.07
126 127 2.178106 TCTTAAAGGCACCCCCTCAAAA 59.822 45.455 0.00 0.00 45.62 2.44
139 140 8.663911 GTTCATCAATCTCTTCACTCTTAAAGG 58.336 37.037 0.00 0.00 0.00 3.11
149 150 6.261603 GCATACATGGTTCATCAATCTCTTCA 59.738 38.462 0.00 0.00 0.00 3.02
151 152 6.124340 TGCATACATGGTTCATCAATCTCTT 58.876 36.000 0.00 0.00 0.00 2.85
182 183 3.498397 CCGCACTCATGTTATGGATAACC 59.502 47.826 7.00 0.00 41.41 2.85
187 188 0.809636 CGCCGCACTCATGTTATGGA 60.810 55.000 0.00 0.00 0.00 3.41
189 190 0.726827 AACGCCGCACTCATGTTATG 59.273 50.000 0.00 0.00 0.00 1.90
190 191 1.448985 AAACGCCGCACTCATGTTAT 58.551 45.000 0.00 0.00 0.00 1.89
191 192 1.069568 CAAAACGCCGCACTCATGTTA 60.070 47.619 0.00 0.00 0.00 2.41
192 193 0.317770 CAAAACGCCGCACTCATGTT 60.318 50.000 0.00 0.00 0.00 2.71
193 194 1.282570 CAAAACGCCGCACTCATGT 59.717 52.632 0.00 0.00 0.00 3.21
194 195 1.442520 CCAAAACGCCGCACTCATG 60.443 57.895 0.00 0.00 0.00 3.07
195 196 1.896660 ACCAAAACGCCGCACTCAT 60.897 52.632 0.00 0.00 0.00 2.90
196 197 2.515057 ACCAAAACGCCGCACTCA 60.515 55.556 0.00 0.00 0.00 3.41
197 198 2.051345 CACCAAAACGCCGCACTC 60.051 61.111 0.00 0.00 0.00 3.51
198 199 4.264638 GCACCAAAACGCCGCACT 62.265 61.111 0.00 0.00 0.00 4.40
212 213 2.827642 GCAGATGAGGCTGGGCAC 60.828 66.667 0.00 0.00 36.41 5.01
213 214 3.332385 TGCAGATGAGGCTGGGCA 61.332 61.111 0.00 0.00 36.41 5.36
214 215 2.827642 GTGCAGATGAGGCTGGGC 60.828 66.667 0.00 0.00 36.41 5.36
215 216 2.124403 GGTGCAGATGAGGCTGGG 60.124 66.667 0.00 0.00 36.41 4.45
216 217 1.451567 CAGGTGCAGATGAGGCTGG 60.452 63.158 0.00 0.00 36.41 4.85
217 218 1.451567 CCAGGTGCAGATGAGGCTG 60.452 63.158 0.00 0.00 38.91 4.85
218 219 1.908340 GACCAGGTGCAGATGAGGCT 61.908 60.000 0.00 0.00 0.00 4.58
219 220 1.451028 GACCAGGTGCAGATGAGGC 60.451 63.158 0.00 0.00 0.00 4.70
220 221 0.107800 CTGACCAGGTGCAGATGAGG 60.108 60.000 0.00 0.00 34.06 3.86
221 222 0.900421 TCTGACCAGGTGCAGATGAG 59.100 55.000 14.46 0.00 36.31 2.90
222 223 1.351076 TTCTGACCAGGTGCAGATGA 58.649 50.000 17.54 6.15 40.51 2.92
223 224 2.189594 TTTCTGACCAGGTGCAGATG 57.810 50.000 17.54 0.00 40.51 2.90
224 225 2.957402 TTTTCTGACCAGGTGCAGAT 57.043 45.000 17.54 0.00 40.51 2.90
225 226 2.727123 TTTTTCTGACCAGGTGCAGA 57.273 45.000 14.46 14.46 39.24 4.26
226 227 2.886523 TGATTTTTCTGACCAGGTGCAG 59.113 45.455 0.00 4.70 0.00 4.41
227 228 2.942804 TGATTTTTCTGACCAGGTGCA 58.057 42.857 0.00 0.00 0.00 4.57
228 229 4.320608 TTTGATTTTTCTGACCAGGTGC 57.679 40.909 0.00 0.00 0.00 5.01
229 230 5.659463 TGTTTTGATTTTTCTGACCAGGTG 58.341 37.500 0.00 0.00 0.00 4.00
230 231 5.930837 TGTTTTGATTTTTCTGACCAGGT 57.069 34.783 0.00 0.00 0.00 4.00
231 232 7.790823 ATTTGTTTTGATTTTTCTGACCAGG 57.209 32.000 0.00 0.00 0.00 4.45
282 283 7.540400 CGCATCAAATTATCTACCACACAAAAA 59.460 33.333 0.00 0.00 0.00 1.94
283 284 7.026562 CGCATCAAATTATCTACCACACAAAA 58.973 34.615 0.00 0.00 0.00 2.44
284 285 6.150307 ACGCATCAAATTATCTACCACACAAA 59.850 34.615 0.00 0.00 0.00 2.83
285 286 5.645929 ACGCATCAAATTATCTACCACACAA 59.354 36.000 0.00 0.00 0.00 3.33
286 287 5.064579 CACGCATCAAATTATCTACCACACA 59.935 40.000 0.00 0.00 0.00 3.72
287 288 5.293324 TCACGCATCAAATTATCTACCACAC 59.707 40.000 0.00 0.00 0.00 3.82
288 289 5.423886 TCACGCATCAAATTATCTACCACA 58.576 37.500 0.00 0.00 0.00 4.17
289 290 5.050091 CCTCACGCATCAAATTATCTACCAC 60.050 44.000 0.00 0.00 0.00 4.16
290 291 5.056480 CCTCACGCATCAAATTATCTACCA 58.944 41.667 0.00 0.00 0.00 3.25
291 292 5.057149 ACCTCACGCATCAAATTATCTACC 58.943 41.667 0.00 0.00 0.00 3.18
292 293 6.604735 AACCTCACGCATCAAATTATCTAC 57.395 37.500 0.00 0.00 0.00 2.59
293 294 6.458206 GCAAACCTCACGCATCAAATTATCTA 60.458 38.462 0.00 0.00 0.00 1.98
294 295 5.677091 GCAAACCTCACGCATCAAATTATCT 60.677 40.000 0.00 0.00 0.00 1.98
295 296 4.500477 GCAAACCTCACGCATCAAATTATC 59.500 41.667 0.00 0.00 0.00 1.75
296 297 4.158394 AGCAAACCTCACGCATCAAATTAT 59.842 37.500 0.00 0.00 0.00 1.28
297 298 3.505680 AGCAAACCTCACGCATCAAATTA 59.494 39.130 0.00 0.00 0.00 1.40
298 299 2.297033 AGCAAACCTCACGCATCAAATT 59.703 40.909 0.00 0.00 0.00 1.82
299 300 1.888512 AGCAAACCTCACGCATCAAAT 59.111 42.857 0.00 0.00 0.00 2.32
300 301 1.266718 GAGCAAACCTCACGCATCAAA 59.733 47.619 0.00 0.00 40.45 2.69
301 302 0.874390 GAGCAAACCTCACGCATCAA 59.126 50.000 0.00 0.00 40.45 2.57
302 303 0.955428 GGAGCAAACCTCACGCATCA 60.955 55.000 0.00 0.00 42.62 3.07
303 304 0.955428 TGGAGCAAACCTCACGCATC 60.955 55.000 0.00 0.00 42.62 3.91
304 305 0.537143 TTGGAGCAAACCTCACGCAT 60.537 50.000 0.00 0.00 42.62 4.73
305 306 0.537143 ATTGGAGCAAACCTCACGCA 60.537 50.000 0.00 0.00 42.62 5.24
306 307 0.598065 AATTGGAGCAAACCTCACGC 59.402 50.000 0.00 0.00 42.62 5.34
307 308 3.369546 AAAATTGGAGCAAACCTCACG 57.630 42.857 0.00 0.00 42.62 4.35
308 309 6.084326 TCTAAAAATTGGAGCAAACCTCAC 57.916 37.500 0.00 0.00 42.62 3.51
309 310 6.493115 TGATCTAAAAATTGGAGCAAACCTCA 59.507 34.615 0.00 0.00 42.62 3.86
310 311 6.924111 TGATCTAAAAATTGGAGCAAACCTC 58.076 36.000 0.00 0.00 33.56 3.85
311 312 6.916360 TGATCTAAAAATTGGAGCAAACCT 57.084 33.333 0.00 0.00 33.56 3.50
312 313 8.445493 CAAATGATCTAAAAATTGGAGCAAACC 58.555 33.333 0.00 0.00 39.92 3.27
313 314 8.445493 CCAAATGATCTAAAAATTGGAGCAAAC 58.555 33.333 0.00 0.00 39.92 2.93
314 315 8.373981 TCCAAATGATCTAAAAATTGGAGCAAA 58.626 29.630 1.12 0.00 39.92 3.68
315 316 7.818930 GTCCAAATGATCTAAAAATTGGAGCAA 59.181 33.333 5.35 0.00 44.92 3.91
316 317 7.039152 TGTCCAAATGATCTAAAAATTGGAGCA 60.039 33.333 5.35 0.00 44.92 4.26
317 318 7.322664 TGTCCAAATGATCTAAAAATTGGAGC 58.677 34.615 5.35 2.73 44.92 4.70
318 319 9.525409 GATGTCCAAATGATCTAAAAATTGGAG 57.475 33.333 5.35 0.00 44.92 3.86
319 320 9.258629 AGATGTCCAAATGATCTAAAAATTGGA 57.741 29.630 1.12 1.12 42.84 3.53
320 321 9.309516 CAGATGTCCAAATGATCTAAAAATTGG 57.690 33.333 0.00 0.00 38.88 3.16
323 324 8.411683 GCTCAGATGTCCAAATGATCTAAAAAT 58.588 33.333 0.00 0.00 0.00 1.82
324 325 7.394077 TGCTCAGATGTCCAAATGATCTAAAAA 59.606 33.333 0.00 0.00 0.00 1.94
325 326 6.885918 TGCTCAGATGTCCAAATGATCTAAAA 59.114 34.615 0.00 0.00 0.00 1.52
326 327 6.417258 TGCTCAGATGTCCAAATGATCTAAA 58.583 36.000 0.00 0.00 0.00 1.85
327 328 5.993055 TGCTCAGATGTCCAAATGATCTAA 58.007 37.500 0.00 0.00 0.00 2.10
328 329 5.608449 CTGCTCAGATGTCCAAATGATCTA 58.392 41.667 0.00 0.00 0.00 1.98
329 330 4.452825 CTGCTCAGATGTCCAAATGATCT 58.547 43.478 0.00 0.00 0.00 2.75
330 331 3.003482 GCTGCTCAGATGTCCAAATGATC 59.997 47.826 0.29 0.00 0.00 2.92
331 332 2.950309 GCTGCTCAGATGTCCAAATGAT 59.050 45.455 0.29 0.00 0.00 2.45
332 333 2.026542 AGCTGCTCAGATGTCCAAATGA 60.027 45.455 0.00 0.00 0.00 2.57
333 334 2.355132 GAGCTGCTCAGATGTCCAAATG 59.645 50.000 24.02 0.00 0.00 2.32
334 335 2.239150 AGAGCTGCTCAGATGTCCAAAT 59.761 45.455 29.49 3.19 32.06 2.32
335 336 1.627329 AGAGCTGCTCAGATGTCCAAA 59.373 47.619 29.49 0.00 32.06 3.28
336 337 1.206610 GAGAGCTGCTCAGATGTCCAA 59.793 52.381 29.49 0.00 43.38 3.53
337 338 0.822811 GAGAGCTGCTCAGATGTCCA 59.177 55.000 29.49 0.00 43.38 4.02
338 339 3.665544 GAGAGCTGCTCAGATGTCC 57.334 57.895 29.49 2.47 43.38 4.02
346 347 2.880890 TCCTTTTTGTTGAGAGCTGCTC 59.119 45.455 21.72 21.72 44.21 4.26
347 348 2.620585 GTCCTTTTTGTTGAGAGCTGCT 59.379 45.455 0.00 0.00 0.00 4.24
348 349 2.358898 TGTCCTTTTTGTTGAGAGCTGC 59.641 45.455 0.00 0.00 0.00 5.25
349 350 4.637483 TTGTCCTTTTTGTTGAGAGCTG 57.363 40.909 0.00 0.00 0.00 4.24
350 351 5.506317 CGATTTGTCCTTTTTGTTGAGAGCT 60.506 40.000 0.00 0.00 0.00 4.09
351 352 4.676924 CGATTTGTCCTTTTTGTTGAGAGC 59.323 41.667 0.00 0.00 0.00 4.09
352 353 5.215160 CCGATTTGTCCTTTTTGTTGAGAG 58.785 41.667 0.00 0.00 0.00 3.20
353 354 4.037446 CCCGATTTGTCCTTTTTGTTGAGA 59.963 41.667 0.00 0.00 0.00 3.27
354 355 4.202111 ACCCGATTTGTCCTTTTTGTTGAG 60.202 41.667 0.00 0.00 0.00 3.02
355 356 3.702045 ACCCGATTTGTCCTTTTTGTTGA 59.298 39.130 0.00 0.00 0.00 3.18
356 357 4.048504 GACCCGATTTGTCCTTTTTGTTG 58.951 43.478 0.00 0.00 0.00 3.33
357 358 3.702045 TGACCCGATTTGTCCTTTTTGTT 59.298 39.130 0.00 0.00 31.60 2.83
358 359 3.292460 TGACCCGATTTGTCCTTTTTGT 58.708 40.909 0.00 0.00 31.60 2.83
359 360 3.568007 TCTGACCCGATTTGTCCTTTTTG 59.432 43.478 0.00 0.00 31.60 2.44
360 361 3.827722 TCTGACCCGATTTGTCCTTTTT 58.172 40.909 0.00 0.00 31.60 1.94
361 362 3.502123 TCTGACCCGATTTGTCCTTTT 57.498 42.857 0.00 0.00 31.60 2.27
362 363 3.146847 GTTCTGACCCGATTTGTCCTTT 58.853 45.455 0.00 0.00 31.60 3.11
363 364 2.105821 TGTTCTGACCCGATTTGTCCTT 59.894 45.455 0.00 0.00 31.60 3.36
364 365 1.697432 TGTTCTGACCCGATTTGTCCT 59.303 47.619 0.00 0.00 31.60 3.85
365 366 2.076863 CTGTTCTGACCCGATTTGTCC 58.923 52.381 0.00 0.00 31.60 4.02
366 367 2.480419 CACTGTTCTGACCCGATTTGTC 59.520 50.000 0.00 0.00 0.00 3.18
367 368 2.494059 CACTGTTCTGACCCGATTTGT 58.506 47.619 0.00 0.00 0.00 2.83
368 369 1.197721 GCACTGTTCTGACCCGATTTG 59.802 52.381 0.00 0.00 0.00 2.32
369 370 1.523758 GCACTGTTCTGACCCGATTT 58.476 50.000 0.00 0.00 0.00 2.17
370 371 0.670546 CGCACTGTTCTGACCCGATT 60.671 55.000 0.00 0.00 0.00 3.34
371 372 1.079819 CGCACTGTTCTGACCCGAT 60.080 57.895 0.00 0.00 0.00 4.18
372 373 2.338620 CGCACTGTTCTGACCCGA 59.661 61.111 0.00 0.00 0.00 5.14
373 374 2.029073 ACGCACTGTTCTGACCCG 59.971 61.111 0.00 0.00 0.00 5.28
374 375 0.531974 TTCACGCACTGTTCTGACCC 60.532 55.000 0.00 0.00 0.00 4.46
375 376 0.582005 GTTCACGCACTGTTCTGACC 59.418 55.000 0.00 0.00 0.00 4.02
376 377 1.286501 TGTTCACGCACTGTTCTGAC 58.713 50.000 0.00 0.00 0.00 3.51
377 378 2.017138 TTGTTCACGCACTGTTCTGA 57.983 45.000 0.00 0.00 0.00 3.27
378 379 4.466567 TTATTGTTCACGCACTGTTCTG 57.533 40.909 0.00 0.00 0.00 3.02
379 380 4.334203 TGTTTATTGTTCACGCACTGTTCT 59.666 37.500 0.00 0.00 0.00 3.01
380 381 4.593157 TGTTTATTGTTCACGCACTGTTC 58.407 39.130 0.00 0.00 0.00 3.18
381 382 4.624336 TGTTTATTGTTCACGCACTGTT 57.376 36.364 0.00 0.00 0.00 3.16
382 383 4.829064 ATGTTTATTGTTCACGCACTGT 57.171 36.364 0.00 0.00 0.00 3.55
383 384 6.509317 AAAATGTTTATTGTTCACGCACTG 57.491 33.333 0.00 0.00 0.00 3.66
384 385 7.702772 TGTAAAAATGTTTATTGTTCACGCACT 59.297 29.630 0.00 0.00 31.94 4.40
385 386 7.832550 TGTAAAAATGTTTATTGTTCACGCAC 58.167 30.769 0.00 0.00 31.94 5.34
386 387 7.915923 TCTGTAAAAATGTTTATTGTTCACGCA 59.084 29.630 0.00 0.00 31.94 5.24
387 388 8.205297 GTCTGTAAAAATGTTTATTGTTCACGC 58.795 33.333 0.00 0.00 31.94 5.34
388 389 8.687301 GGTCTGTAAAAATGTTTATTGTTCACG 58.313 33.333 0.00 0.00 31.94 4.35
389 390 8.974408 GGGTCTGTAAAAATGTTTATTGTTCAC 58.026 33.333 0.00 0.00 31.94 3.18
390 391 8.145122 GGGGTCTGTAAAAATGTTTATTGTTCA 58.855 33.333 0.00 0.00 31.94 3.18
391 392 7.327518 CGGGGTCTGTAAAAATGTTTATTGTTC 59.672 37.037 0.00 0.00 31.94 3.18
392 393 7.014422 TCGGGGTCTGTAAAAATGTTTATTGTT 59.986 33.333 0.00 0.00 31.94 2.83
393 394 6.490721 TCGGGGTCTGTAAAAATGTTTATTGT 59.509 34.615 0.00 0.00 31.94 2.71
394 395 6.915349 TCGGGGTCTGTAAAAATGTTTATTG 58.085 36.000 0.00 0.00 31.94 1.90
395 396 7.527568 TTCGGGGTCTGTAAAAATGTTTATT 57.472 32.000 0.00 0.00 31.94 1.40
396 397 7.712204 ATTCGGGGTCTGTAAAAATGTTTAT 57.288 32.000 0.00 0.00 31.94 1.40
397 398 7.527568 AATTCGGGGTCTGTAAAAATGTTTA 57.472 32.000 0.00 0.00 0.00 2.01
398 399 6.413783 AATTCGGGGTCTGTAAAAATGTTT 57.586 33.333 0.00 0.00 0.00 2.83
399 400 6.413783 AAATTCGGGGTCTGTAAAAATGTT 57.586 33.333 0.00 0.00 0.00 2.71
400 401 7.712204 ATAAATTCGGGGTCTGTAAAAATGT 57.288 32.000 0.00 0.00 0.00 2.71
401 402 8.996024 AAATAAATTCGGGGTCTGTAAAAATG 57.004 30.769 0.00 0.00 0.00 2.32
427 428 0.534877 TGAGCAGCTCTCGGCAAAAA 60.535 50.000 23.15 0.00 44.86 1.94
428 429 0.952497 CTGAGCAGCTCTCGGCAAAA 60.952 55.000 23.15 0.00 44.86 2.44
429 430 1.375140 CTGAGCAGCTCTCGGCAAA 60.375 57.895 23.15 0.00 44.86 3.68
430 431 1.611474 ATCTGAGCAGCTCTCGGCAA 61.611 55.000 23.15 0.68 45.76 4.52
431 432 2.056815 ATCTGAGCAGCTCTCGGCA 61.057 57.895 23.15 2.15 45.76 5.69
432 433 1.592131 CATCTGAGCAGCTCTCGGC 60.592 63.158 23.15 0.00 45.76 5.54
434 435 1.135170 TGAACATCTGAGCAGCTCTCG 60.135 52.381 23.15 13.93 44.86 4.04
435 436 2.669300 TGAACATCTGAGCAGCTCTC 57.331 50.000 23.15 11.54 42.23 3.20
436 437 3.413846 TTTGAACATCTGAGCAGCTCT 57.586 42.857 23.15 1.24 0.00 4.09
437 438 3.688185 TCATTTGAACATCTGAGCAGCTC 59.312 43.478 16.21 16.21 0.00 4.09
438 439 3.682696 TCATTTGAACATCTGAGCAGCT 58.317 40.909 0.00 0.00 0.00 4.24
439 440 4.634184 ATCATTTGAACATCTGAGCAGC 57.366 40.909 0.00 0.00 0.00 5.25
440 441 6.617879 TCAAATCATTTGAACATCTGAGCAG 58.382 36.000 10.55 0.00 45.94 4.24
441 442 6.578163 TCAAATCATTTGAACATCTGAGCA 57.422 33.333 10.55 0.00 45.94 4.26
453 454 8.216453 GGTTCGATTCAACTTTCAAATCATTTG 58.784 33.333 3.46 3.46 41.96 2.32
454 455 8.143835 AGGTTCGATTCAACTTTCAAATCATTT 58.856 29.630 0.00 0.00 31.25 2.32
455 456 7.661040 AGGTTCGATTCAACTTTCAAATCATT 58.339 30.769 0.00 0.00 31.25 2.57
456 457 7.219484 AGGTTCGATTCAACTTTCAAATCAT 57.781 32.000 0.00 0.00 31.25 2.45
457 458 6.565811 CGAGGTTCGATTCAACTTTCAAATCA 60.566 38.462 0.00 0.00 43.74 2.57
458 459 5.790495 CGAGGTTCGATTCAACTTTCAAATC 59.210 40.000 0.00 0.00 43.74 2.17
459 460 5.238650 ACGAGGTTCGATTCAACTTTCAAAT 59.761 36.000 5.38 0.00 43.74 2.32
460 461 4.573201 ACGAGGTTCGATTCAACTTTCAAA 59.427 37.500 5.38 0.00 43.74 2.69
461 462 4.025229 CACGAGGTTCGATTCAACTTTCAA 60.025 41.667 5.38 0.00 43.74 2.69
462 463 3.493129 CACGAGGTTCGATTCAACTTTCA 59.507 43.478 5.38 0.00 43.74 2.69
463 464 3.664537 GCACGAGGTTCGATTCAACTTTC 60.665 47.826 5.38 0.00 43.74 2.62
464 465 2.223377 GCACGAGGTTCGATTCAACTTT 59.777 45.455 5.38 0.00 43.74 2.66
465 466 1.798813 GCACGAGGTTCGATTCAACTT 59.201 47.619 5.38 0.00 43.74 2.66
466 467 1.270094 TGCACGAGGTTCGATTCAACT 60.270 47.619 5.38 0.00 43.74 3.16
467 468 1.144969 TGCACGAGGTTCGATTCAAC 58.855 50.000 5.38 0.00 43.74 3.18
468 469 1.999735 GATGCACGAGGTTCGATTCAA 59.000 47.619 5.38 0.00 43.74 2.69
469 470 1.067213 TGATGCACGAGGTTCGATTCA 60.067 47.619 5.38 0.86 43.74 2.57
470 471 1.640428 TGATGCACGAGGTTCGATTC 58.360 50.000 5.38 0.00 43.74 2.52
471 472 2.093306 TTGATGCACGAGGTTCGATT 57.907 45.000 5.38 0.00 43.74 3.34
472 473 2.093306 TTTGATGCACGAGGTTCGAT 57.907 45.000 5.38 0.00 43.74 3.59
473 474 2.093306 ATTTGATGCACGAGGTTCGA 57.907 45.000 5.38 0.00 43.74 3.71
474 475 2.900122 AATTTGATGCACGAGGTTCG 57.100 45.000 0.00 0.00 46.93 3.95
475 476 5.741388 AGATAATTTGATGCACGAGGTTC 57.259 39.130 0.00 0.00 0.00 3.62
476 477 5.527582 GGTAGATAATTTGATGCACGAGGTT 59.472 40.000 0.00 0.00 0.00 3.50
477 478 5.057149 GGTAGATAATTTGATGCACGAGGT 58.943 41.667 0.00 0.00 0.00 3.85
478 479 5.050091 GTGGTAGATAATTTGATGCACGAGG 60.050 44.000 0.00 0.00 0.00 4.63
479 480 5.523552 TGTGGTAGATAATTTGATGCACGAG 59.476 40.000 0.00 0.00 0.00 4.18
480 481 5.423886 TGTGGTAGATAATTTGATGCACGA 58.576 37.500 0.00 0.00 0.00 4.35
481 482 5.733226 TGTGGTAGATAATTTGATGCACG 57.267 39.130 0.00 0.00 0.00 5.34
551 552 1.228429 CACCCGCCCTGAGGAAAAA 60.228 57.895 0.00 0.00 33.47 1.94
552 553 2.434331 CACCCGCCCTGAGGAAAA 59.566 61.111 0.00 0.00 33.47 2.29
553 554 4.344865 GCACCCGCCCTGAGGAAA 62.345 66.667 0.00 0.00 33.47 3.13
559 560 4.778143 GTAGGTGCACCCGCCCTG 62.778 72.222 32.29 0.00 42.81 4.45
563 564 2.582734 ATAACGGTAGGTGCACCCGC 62.583 60.000 32.29 23.53 45.49 6.13
564 565 0.746063 TATAACGGTAGGTGCACCCG 59.254 55.000 32.29 28.37 46.93 5.28
565 566 2.093553 TGTTATAACGGTAGGTGCACCC 60.094 50.000 32.29 17.77 34.90 4.61
566 567 3.249986 TGTTATAACGGTAGGTGCACC 57.750 47.619 29.22 29.22 35.04 5.01
567 568 5.220719 GGAAATGTTATAACGGTAGGTGCAC 60.221 44.000 8.80 8.80 0.00 4.57
568 569 4.877251 GGAAATGTTATAACGGTAGGTGCA 59.123 41.667 10.92 0.00 0.00 4.57
569 570 5.121105 AGGAAATGTTATAACGGTAGGTGC 58.879 41.667 10.92 0.00 0.00 5.01
570 571 7.619964 AAAGGAAATGTTATAACGGTAGGTG 57.380 36.000 10.92 0.00 0.00 4.00
571 572 7.666804 ACAAAAGGAAATGTTATAACGGTAGGT 59.333 33.333 10.92 0.00 0.00 3.08
572 573 8.047413 ACAAAAGGAAATGTTATAACGGTAGG 57.953 34.615 10.92 0.00 0.00 3.18
646 651 2.097466 CACACTGTTGTTGGGACACTTC 59.903 50.000 0.00 0.00 39.29 3.01
687 698 0.531200 GGCTGGTACGTCTTGCTAGT 59.469 55.000 0.00 0.00 0.00 2.57
710 721 0.764271 TGGTGAGCAGTGTTGATGGA 59.236 50.000 0.00 0.00 0.00 3.41
796 807 2.982130 CCTAGCTGCGACAGGGTT 59.018 61.111 0.00 0.00 31.21 4.11
805 816 3.130160 GCAGTGGTGCCTAGCTGC 61.130 66.667 0.00 13.55 44.72 5.25
820 831 1.202114 GTCCATTTCAATCAAGCGGCA 59.798 47.619 1.45 0.00 0.00 5.69
894 909 5.678583 TGAAGGAGATGAAGATGATGGTTC 58.321 41.667 0.00 0.00 0.00 3.62
896 911 5.682659 CTTGAAGGAGATGAAGATGATGGT 58.317 41.667 0.00 0.00 0.00 3.55
904 919 2.005451 CCGTGCTTGAAGGAGATGAAG 58.995 52.381 0.00 0.00 0.00 3.02
917 932 1.825474 AGTAGAGTATGTGCCGTGCTT 59.175 47.619 0.00 0.00 0.00 3.91
918 933 1.475403 AGTAGAGTATGTGCCGTGCT 58.525 50.000 0.00 0.00 0.00 4.40
956 975 5.122869 GTGTCGCAGATCGTAGGGTATATAA 59.877 44.000 0.00 0.00 40.67 0.98
963 982 1.065928 GGTGTCGCAGATCGTAGGG 59.934 63.158 0.00 0.00 40.67 3.53
981 1003 0.175302 TTGCTGGTTTTGGTGTGCAG 59.825 50.000 0.00 0.00 0.00 4.41
984 1006 1.868469 CCATTGCTGGTTTTGGTGTG 58.132 50.000 0.00 0.00 37.79 3.82
991 1013 4.054825 CGGCGCCATTGCTGGTTT 62.055 61.111 28.98 0.00 45.10 3.27
1202 1284 3.737172 CCTTCCCAAACGGCTGCG 61.737 66.667 0.00 0.00 0.00 5.18
1262 1344 0.401356 ATGTGGATGTGTGGTGCTCA 59.599 50.000 0.00 0.00 0.00 4.26
1263 1345 1.470098 GAATGTGGATGTGTGGTGCTC 59.530 52.381 0.00 0.00 0.00 4.26
1264 1346 1.202915 TGAATGTGGATGTGTGGTGCT 60.203 47.619 0.00 0.00 0.00 4.40
1272 1354 7.994425 TTTGTAAGTATGTGAATGTGGATGT 57.006 32.000 0.00 0.00 0.00 3.06
1276 1358 9.345517 CTTCATTTTGTAAGTATGTGAATGTGG 57.654 33.333 0.00 0.00 0.00 4.17
1291 1373 7.232534 AGGTTATTTCAGGTGCTTCATTTTGTA 59.767 33.333 0.00 0.00 0.00 2.41
1305 1406 3.217626 GAGCCATGGAGGTTATTTCAGG 58.782 50.000 18.40 0.00 40.61 3.86
1307 1408 3.266772 AGTGAGCCATGGAGGTTATTTCA 59.733 43.478 18.40 2.49 40.61 2.69
1337 1438 6.150140 ACATTAGAATGCAAGTTTGAGACCTC 59.850 38.462 2.09 0.00 40.04 3.85
1602 1749 4.341235 TCAAGAACCTTCTTCGTCTTCTCA 59.659 41.667 0.00 0.00 45.23 3.27
1850 2004 2.026636 CCGGGGATGACTTTAGAAACCA 60.027 50.000 0.00 0.00 0.00 3.67
1857 2011 0.324552 TCGGACCGGGGATGACTTTA 60.325 55.000 15.25 0.00 0.00 1.85
1864 2018 2.442272 CTCTGTCGGACCGGGGAT 60.442 66.667 15.25 0.00 0.00 3.85
1915 2078 7.910441 ACATGGCTTTTATTGAATTTCTTGG 57.090 32.000 0.00 0.00 0.00 3.61
1979 2142 3.253188 CACCCTTTTCGTGTGATGTTGAT 59.747 43.478 0.00 0.00 31.66 2.57
1992 2155 2.396157 CCTACGCGGCACCCTTTTC 61.396 63.158 12.47 0.00 0.00 2.29
2006 2169 0.464452 ACCATGAAGCTACGCCCTAC 59.536 55.000 0.00 0.00 0.00 3.18
2008 2171 1.221840 CACCATGAAGCTACGCCCT 59.778 57.895 0.00 0.00 0.00 5.19
2009 2172 1.078426 ACACCATGAAGCTACGCCC 60.078 57.895 0.00 0.00 0.00 6.13
2010 2173 1.982073 GCACACCATGAAGCTACGCC 61.982 60.000 0.00 0.00 0.00 5.68
2032 2545 6.039270 AGCATAGCAGTCTTCTAGTTCTACTG 59.961 42.308 10.75 10.75 40.38 2.74
2060 2573 1.726791 CATGGACAAGTGTACGTGCTC 59.273 52.381 4.97 0.72 38.86 4.26
2065 2578 3.390135 AGTTGACATGGACAAGTGTACG 58.610 45.455 12.27 0.00 31.00 3.67
2071 2584 6.867662 ACTCTTAAAGTTGACATGGACAAG 57.132 37.500 7.63 0.22 33.03 3.16
2187 2880 6.801575 TCTTAACAAGGTAAAAAGTGGCAAG 58.198 36.000 0.00 0.00 0.00 4.01
2267 2960 9.610705 GAATGTGGCATATATCTCTATGAACAT 57.389 33.333 0.00 0.00 38.37 2.71
2293 2986 0.469917 AACCGGGCATATCCTGTGAG 59.530 55.000 6.32 0.00 39.73 3.51
2304 2997 2.420408 GGTATGCTAGTTAAACCGGGCA 60.420 50.000 6.32 2.74 0.00 5.36
2305 2998 2.158856 AGGTATGCTAGTTAAACCGGGC 60.159 50.000 6.32 0.00 35.32 6.13
2366 3059 3.071312 TCTTCTAAAGTTGTACGGGGCAA 59.929 43.478 0.00 0.00 0.00 4.52
2367 3060 2.633967 TCTTCTAAAGTTGTACGGGGCA 59.366 45.455 0.00 0.00 0.00 5.36
2399 4086 5.362556 AGACATGAATTTTGAACTGTCCG 57.637 39.130 0.00 0.00 34.88 4.79
2422 4109 4.345257 AGCCACCTTGTACATATCAGTAGG 59.655 45.833 0.00 0.63 0.00 3.18
2462 4149 5.292101 GTCTCCTCCAACAAAATCGATACTG 59.708 44.000 0.00 1.37 0.00 2.74
2469 4156 4.152580 GTCGAAGTCTCCTCCAACAAAATC 59.847 45.833 0.00 0.00 0.00 2.17
2478 4165 0.728542 GAGTCGTCGAAGTCTCCTCC 59.271 60.000 12.98 0.00 0.00 4.30
2507 4194 5.163764 TGGTAAGATGCATCGTCAAATGTTC 60.164 40.000 18.70 3.72 0.00 3.18
2512 4199 4.033932 CGATTGGTAAGATGCATCGTCAAA 59.966 41.667 18.70 13.32 33.60 2.69
2524 4211 3.071479 GTTGGTTGAGCGATTGGTAAGA 58.929 45.455 0.00 0.00 0.00 2.10
2538 4225 4.402056 ACACCTATATCGGAGTTGGTTG 57.598 45.455 0.00 0.00 0.00 3.77
2539 4226 4.766375 CAACACCTATATCGGAGTTGGTT 58.234 43.478 21.52 7.19 45.77 3.67
2550 4237 5.155278 TCAAACACCGTCAACACCTATAT 57.845 39.130 0.00 0.00 0.00 0.86
2580 4267 6.378280 GGGATTGATCTTAGTGATTTGGTTGT 59.622 38.462 0.00 0.00 35.14 3.32
2623 4310 6.813152 CCGATTGCATTTAAATCCTTTCTTGT 59.187 34.615 0.00 0.00 31.55 3.16
2694 4381 3.258622 GGCCTCCTATACTACACCACATC 59.741 52.174 0.00 0.00 0.00 3.06
2748 4435 4.296056 TGTCCCTCCTTAAATACCCTCTC 58.704 47.826 0.00 0.00 0.00 3.20
2777 4464 4.440829 TTGGGCTGGCCGAATCCC 62.441 66.667 16.08 12.87 39.22 3.85
2798 4485 3.805497 GGATTCGACCCCACCCCC 61.805 72.222 0.00 0.00 0.00 5.40
2799 4486 1.933307 ATTGGATTCGACCCCACCCC 61.933 60.000 4.57 0.00 31.11 4.95
2800 4487 0.465642 GATTGGATTCGACCCCACCC 60.466 60.000 4.57 0.00 31.11 4.61
2801 4488 0.546598 AGATTGGATTCGACCCCACC 59.453 55.000 4.57 1.33 31.11 4.61
2802 4489 2.420058 AAGATTGGATTCGACCCCAC 57.580 50.000 4.57 0.00 31.11 4.61
2803 4490 3.521937 ACTTAAGATTGGATTCGACCCCA 59.478 43.478 10.09 1.08 0.00 4.96
2804 4491 4.127907 GACTTAAGATTGGATTCGACCCC 58.872 47.826 10.09 0.00 0.00 4.95
2805 4492 3.802685 CGACTTAAGATTGGATTCGACCC 59.197 47.826 10.09 0.00 0.00 4.46
2806 4493 3.802685 CCGACTTAAGATTGGATTCGACC 59.197 47.826 10.09 0.00 0.00 4.79
2807 4494 4.430908 ACCGACTTAAGATTGGATTCGAC 58.569 43.478 10.09 0.00 0.00 4.20
2808 4495 4.401519 AGACCGACTTAAGATTGGATTCGA 59.598 41.667 10.09 0.00 0.00 3.71
2809 4496 4.683832 AGACCGACTTAAGATTGGATTCG 58.316 43.478 10.09 5.97 0.00 3.34
2810 4497 5.051153 GGAGACCGACTTAAGATTGGATTC 58.949 45.833 10.09 9.81 0.00 2.52
2811 4498 4.717280 AGGAGACCGACTTAAGATTGGATT 59.283 41.667 10.09 2.11 0.00 3.01
2812 4499 4.290942 AGGAGACCGACTTAAGATTGGAT 58.709 43.478 10.09 2.69 0.00 3.41
2813 4500 3.709587 AGGAGACCGACTTAAGATTGGA 58.290 45.455 10.09 0.00 0.00 3.53
2814 4501 4.473477 AAGGAGACCGACTTAAGATTGG 57.527 45.455 10.09 9.87 0.00 3.16
2815 4502 5.725362 AGAAAGGAGACCGACTTAAGATTG 58.275 41.667 10.09 0.00 0.00 2.67
2816 4503 7.477945 TTAGAAAGGAGACCGACTTAAGATT 57.522 36.000 10.09 0.00 0.00 2.40
2817 4504 7.477945 TTTAGAAAGGAGACCGACTTAAGAT 57.522 36.000 10.09 0.00 0.00 2.40
2818 4505 6.906157 TTTAGAAAGGAGACCGACTTAAGA 57.094 37.500 10.09 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.