Multiple sequence alignment - TraesCS5D01G268200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G268200 chr5D 100.000 9306 0 0 1 9306 371672626 371663321 0.000000e+00 17186.0
1 TraesCS5D01G268200 chr5D 96.226 318 10 2 243 559 14176233 14175917 3.850000e-143 520.0
2 TraesCS5D01G268200 chr5D 97.797 227 5 0 1 227 14177356 14177130 8.760000e-105 392.0
3 TraesCS5D01G268200 chr5D 85.638 188 16 5 42 227 14177281 14177103 4.440000e-43 187.0
4 TraesCS5D01G268200 chr5A 96.595 6373 149 35 1431 7774 474586414 474580081 0.000000e+00 10504.0
5 TraesCS5D01G268200 chr5A 89.168 757 37 14 698 1409 474587159 474586403 0.000000e+00 902.0
6 TraesCS5D01G268200 chr5A 94.715 473 18 3 8492 8964 474579025 474578560 0.000000e+00 728.0
7 TraesCS5D01G268200 chr5A 96.825 315 9 1 245 559 685595012 685594699 8.280000e-145 525.0
8 TraesCS5D01G268200 chr5A 92.157 357 24 4 8020 8375 474579924 474579571 1.400000e-137 501.0
9 TraesCS5D01G268200 chr5A 85.806 310 18 11 8970 9278 474578499 474578215 1.170000e-78 305.0
10 TraesCS5D01G268200 chr5A 97.175 177 5 0 34 210 685596045 685595869 5.460000e-77 300.0
11 TraesCS5D01G268200 chr5A 95.266 169 6 2 7855 8021 290391865 290391697 5.540000e-67 267.0
12 TraesCS5D01G268200 chr5A 90.411 146 9 2 8775 8920 474579307 474579167 4.440000e-43 187.0
13 TraesCS5D01G268200 chr5B 96.119 5927 175 27 1862 7774 441538670 441532785 0.000000e+00 9620.0
14 TraesCS5D01G268200 chr5B 91.960 1306 62 26 8020 9306 441532612 441531331 0.000000e+00 1790.0
15 TraesCS5D01G268200 chr5B 92.637 1168 46 15 698 1832 441539823 441538663 0.000000e+00 1644.0
16 TraesCS5D01G268200 chr3D 97.161 317 8 1 243 559 162956458 162956773 1.380000e-147 534.0
17 TraesCS5D01G268200 chr3D 93.296 179 8 4 7847 8021 360696006 360695828 2.580000e-65 261.0
18 TraesCS5D01G268200 chr7A 97.436 312 7 1 248 559 182733661 182733351 1.780000e-146 531.0
19 TraesCS5D01G268200 chr7A 91.795 195 14 2 34 227 182734835 182734642 4.280000e-68 270.0
20 TraesCS5D01G268200 chr7A 90.374 187 9 5 42 227 182734793 182734615 4.340000e-58 237.0
21 TraesCS5D01G268200 chr7A 88.276 145 14 1 1071 1212 217587313 217587169 4.470000e-38 171.0
22 TraesCS5D01G268200 chr4D 96.845 317 9 1 243 559 82356878 82356563 6.400000e-146 529.0
23 TraesCS5D01G268200 chr4D 94.350 177 7 3 7856 8029 416761121 416760945 1.540000e-67 268.0
24 TraesCS5D01G268200 chr4D 94.186 172 8 2 7859 8028 93338206 93338035 2.580000e-65 261.0
25 TraesCS5D01G268200 chr4D 90.909 55 3 2 610 664 482335519 482335571 1.300000e-08 73.1
26 TraesCS5D01G268200 chr4D 95.000 40 2 0 625 664 11573376 11573337 7.800000e-06 63.9
27 TraesCS5D01G268200 chr1D 96.845 317 7 1 243 559 203164495 203164808 2.300000e-145 527.0
28 TraesCS5D01G268200 chr1D 93.860 228 12 2 1 227 203163344 203163570 8.950000e-90 342.0
29 TraesCS5D01G268200 chr1D 93.296 179 9 3 7859 8035 238940216 238940393 2.580000e-65 261.0
30 TraesCS5D01G268200 chr1D 91.935 186 9 1 42 227 203163419 203163598 1.200000e-63 255.0
31 TraesCS5D01G268200 chr6D 95.238 315 14 1 245 559 419311279 419310966 1.800000e-136 497.0
32 TraesCS5D01G268200 chr6D 88.936 235 17 2 2 227 419312678 419312444 1.980000e-71 281.0
33 TraesCS5D01G268200 chr7B 94.620 316 16 1 245 559 48706915 48707230 1.090000e-133 488.0
34 TraesCS5D01G268200 chr7B 94.565 184 9 1 2 184 48705875 48706058 5.500000e-72 283.0
35 TraesCS5D01G268200 chr7B 88.276 145 14 1 1071 1212 196868474 196868618 4.470000e-38 171.0
36 TraesCS5D01G268200 chr2B 94.855 311 15 1 249 559 382179145 382179454 1.400000e-132 484.0
37 TraesCS5D01G268200 chr2B 95.833 168 5 2 7858 8023 703976532 703976365 4.280000e-68 270.0
38 TraesCS5D01G268200 chr2B 89.163 203 13 2 2 195 382178047 382178249 2.600000e-60 244.0
39 TraesCS5D01G268200 chr2B 87.500 56 6 1 625 680 231601491 231601437 7.800000e-06 63.9
40 TraesCS5D01G268200 chr2B 95.000 40 2 0 625 664 779647359 779647320 7.800000e-06 63.9
41 TraesCS5D01G268200 chr7D 74.168 751 147 30 3769 4502 205552158 205551438 1.540000e-67 268.0
42 TraesCS5D01G268200 chr7D 93.296 179 7 5 7852 8026 39001278 39001455 9.270000e-65 259.0
43 TraesCS5D01G268200 chr7D 88.276 145 14 1 1071 1212 205554140 205553996 4.470000e-38 171.0
44 TraesCS5D01G268200 chr7D 84.656 189 9 5 2 170 394404539 394404351 4.470000e-38 171.0
45 TraesCS5D01G268200 chr6B 93.785 177 7 4 7849 8021 211161467 211161643 7.170000e-66 263.0
46 TraesCS5D01G268200 chr6B 95.000 40 2 0 625 664 9570508 9570469 7.800000e-06 63.9
47 TraesCS5D01G268200 chr2D 88.462 208 20 4 7855 8060 35511433 35511228 2.010000e-61 248.0
48 TraesCS5D01G268200 chr2D 92.857 42 3 0 623 664 17068357 17068398 2.810000e-05 62.1
49 TraesCS5D01G268200 chr2D 92.500 40 3 0 625 664 2047632 2047593 3.630000e-04 58.4
50 TraesCS5D01G268200 chr3B 89.266 177 11 1 2 170 548010174 548010350 2.040000e-51 215.0
51 TraesCS5D01G268200 chr3B 95.000 40 2 0 625 664 481914081 481914120 7.800000e-06 63.9
52 TraesCS5D01G268200 chr6A 92.857 42 3 0 621 662 536233920 536233961 2.810000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G268200 chr5D 371663321 371672626 9305 True 17186.000000 17186 100.000000 1 9306 1 chr5D.!!$R1 9305
1 TraesCS5D01G268200 chr5D 14175917 14177356 1439 True 366.333333 520 93.220333 1 559 3 chr5D.!!$R2 558
2 TraesCS5D01G268200 chr5A 474578215 474587159 8944 True 2187.833333 10504 91.475333 698 9278 6 chr5A.!!$R2 8580
3 TraesCS5D01G268200 chr5A 685594699 685596045 1346 True 412.500000 525 97.000000 34 559 2 chr5A.!!$R3 525
4 TraesCS5D01G268200 chr5B 441531331 441539823 8492 True 4351.333333 9620 93.572000 698 9306 3 chr5B.!!$R1 8608
5 TraesCS5D01G268200 chr7A 182733351 182734835 1484 True 346.000000 531 93.201667 34 559 3 chr7A.!!$R2 525
6 TraesCS5D01G268200 chr1D 203163344 203164808 1464 False 374.666667 527 94.213333 1 559 3 chr1D.!!$F2 558
7 TraesCS5D01G268200 chr6D 419310966 419312678 1712 True 389.000000 497 92.087000 2 559 2 chr6D.!!$R1 557
8 TraesCS5D01G268200 chr7B 48705875 48707230 1355 False 385.500000 488 94.592500 2 559 2 chr7B.!!$F2 557
9 TraesCS5D01G268200 chr2B 382178047 382179454 1407 False 364.000000 484 92.009000 2 559 2 chr2B.!!$F1 557
10 TraesCS5D01G268200 chr7D 205551438 205554140 2702 True 219.500000 268 81.222000 1071 4502 2 chr7D.!!$R2 3431

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
415 1807 0.249676 TAAACGGCCGCTGGTTATGA 59.750 50.000 28.58 0.0 0.00 2.15 F
812 2205 0.831307 GACCCTTAGCCGTCCATCTT 59.169 55.000 0.00 0.0 0.00 2.40 F
1455 4037 1.135939 CGACGAGTGGTGCGTGATA 59.864 57.895 0.00 0.0 42.77 2.15 F
1631 4223 2.526304 TCAGTTTTACTGCTGCGACT 57.474 45.000 1.98 0.0 45.54 4.18 F
2910 5508 1.011333 AAAGTTTGACACACGACGGG 58.989 50.000 0.00 0.0 0.00 5.28 F
3706 6345 2.616376 TGTTGAATTGTTGAGGTCCACG 59.384 45.455 0.00 0.0 0.00 4.94 F
4722 7365 3.813166 TCCTCTACTTTGCCTTTTGTTCG 59.187 43.478 0.00 0.0 0.00 3.95 F
6121 8764 2.170397 TGTGATGTGTCAGACTTGGTGT 59.830 45.455 1.31 0.0 34.36 4.16 F
6190 8833 2.873094 AGGCGCCTTACTAGGTTTTT 57.127 45.000 27.08 0.0 44.00 1.94 F
7979 10718 1.890489 TGCACCGTATGTAGTCACTGT 59.110 47.619 0.00 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1498 4080 0.104855 AAACAGTGCGCAGAGACAGA 59.895 50.000 12.22 0.0 0.00 3.41 R
1827 4419 0.599728 GCATTTTGGCAGCGGTTCAA 60.600 50.000 0.00 0.0 0.00 2.69 R
2850 5448 1.496060 AGACAGTGTGGTCTTGGACA 58.504 50.000 0.00 0.0 45.59 4.02 R
2964 5562 1.670949 TTCTCTAGCCAGCCTCTGCG 61.671 60.000 0.00 0.0 44.33 5.18 R
4773 7416 2.158579 ACAGGTTACCAACGGAAACCAT 60.159 45.455 3.51 0.0 44.21 3.55 R
5339 7982 2.235898 AGGGAAAAGCACAAACAAGCAA 59.764 40.909 0.00 0.0 0.00 3.91 R
6193 8836 2.493675 CCCTTCAAGACGAGACATGAGA 59.506 50.000 0.00 0.0 0.00 3.27 R
7959 10698 1.890489 ACAGTGACTACATACGGTGCA 59.110 47.619 0.00 0.0 0.00 4.57 R
8156 10896 2.406130 AGCCAATTGTCATGTTTTGCG 58.594 42.857 4.43 0.0 0.00 4.85 R
9145 12423 1.051812 CCCTCTCCGTCATTGGCTAT 58.948 55.000 0.00 0.0 0.00 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
158 315 4.034626 CGTGTGAACAACTTTGGTATGTCA 59.965 41.667 0.00 0.00 0.00 3.58
210 483 7.783090 TTGTCGTGTAAACAACTTTGGTATA 57.217 32.000 0.00 0.00 31.90 1.47
212 485 6.074409 TGTCGTGTAAACAACTTTGGTATACG 60.074 38.462 13.36 13.36 38.01 3.06
215 488 6.292811 CGTGTAAACAACTTTGGTATACGGTT 60.293 38.462 12.42 0.00 35.67 4.44
218 491 5.678132 AACAACTTTGGTATACGGTTGTC 57.322 39.130 22.71 2.92 46.09 3.18
219 492 3.742369 ACAACTTTGGTATACGGTTGTCG 59.258 43.478 19.66 3.28 44.39 4.35
228 501 4.112086 CGGTTGTCGTGTGAACCA 57.888 55.556 0.00 0.00 41.61 3.67
230 503 1.647084 GGTTGTCGTGTGAACCAGC 59.353 57.895 0.00 0.00 41.24 4.85
231 504 1.647084 GTTGTCGTGTGAACCAGCC 59.353 57.895 0.00 0.00 0.00 4.85
232 505 1.525077 TTGTCGTGTGAACCAGCCC 60.525 57.895 0.00 0.00 0.00 5.19
233 506 2.110213 GTCGTGTGAACCAGCCCA 59.890 61.111 0.00 0.00 0.00 5.36
234 507 1.961277 GTCGTGTGAACCAGCCCAG 60.961 63.158 0.00 0.00 0.00 4.45
236 509 2.282462 GTGTGAACCAGCCCAGGG 60.282 66.667 0.00 0.00 0.00 4.45
237 510 3.579302 TGTGAACCAGCCCAGGGG 61.579 66.667 7.91 3.48 38.57 4.79
238 511 3.256960 GTGAACCAGCCCAGGGGA 61.257 66.667 7.91 0.00 37.50 4.81
415 1807 0.249676 TAAACGGCCGCTGGTTATGA 59.750 50.000 28.58 0.00 0.00 2.15
465 1857 3.637229 TGACGGAAGGGCAAAAACATAAA 59.363 39.130 0.00 0.00 0.00 1.40
532 1925 1.404315 GGCAAAACAAACGGGTGTGAA 60.404 47.619 0.00 0.00 0.00 3.18
559 1952 7.668052 ACAACTAAGGGCTGAAATGTAATTGTA 59.332 33.333 0.00 0.00 36.10 2.41
560 1953 8.686334 CAACTAAGGGCTGAAATGTAATTGTAT 58.314 33.333 0.00 0.00 36.10 2.29
561 1954 9.914834 AACTAAGGGCTGAAATGTAATTGTATA 57.085 29.630 0.00 0.00 36.10 1.47
564 1957 8.995027 AAGGGCTGAAATGTAATTGTATATGA 57.005 30.769 0.00 0.00 36.10 2.15
565 1958 8.995027 AGGGCTGAAATGTAATTGTATATGAA 57.005 30.769 0.00 0.00 36.10 2.57
566 1959 9.420118 AGGGCTGAAATGTAATTGTATATGAAA 57.580 29.630 0.00 0.00 36.10 2.69
651 2044 9.397280 ACTCCTTTTGTAAAGAAATATAGGAGC 57.603 33.333 14.28 0.00 41.01 4.70
652 2045 8.433421 TCCTTTTGTAAAGAAATATAGGAGCG 57.567 34.615 0.89 0.00 0.00 5.03
653 2046 8.044908 TCCTTTTGTAAAGAAATATAGGAGCGT 58.955 33.333 0.89 0.00 0.00 5.07
654 2047 8.674607 CCTTTTGTAAAGAAATATAGGAGCGTT 58.325 33.333 0.89 0.00 0.00 4.84
662 2055 8.819643 AAGAAATATAGGAGCGTTTAGATCAC 57.180 34.615 0.00 0.00 36.90 3.06
663 2056 8.184304 AGAAATATAGGAGCGTTTAGATCACT 57.816 34.615 0.00 0.00 36.90 3.41
664 2057 8.643324 AGAAATATAGGAGCGTTTAGATCACTT 58.357 33.333 0.00 0.00 36.90 3.16
665 2058 9.262358 GAAATATAGGAGCGTTTAGATCACTTT 57.738 33.333 0.00 0.00 36.90 2.66
666 2059 9.614792 AAATATAGGAGCGTTTAGATCACTTTT 57.385 29.630 0.00 0.00 36.90 2.27
667 2060 8.819643 ATATAGGAGCGTTTAGATCACTTTTC 57.180 34.615 0.00 0.00 36.90 2.29
668 2061 3.927142 AGGAGCGTTTAGATCACTTTTCG 59.073 43.478 0.00 0.00 36.90 3.46
669 2062 3.678548 GGAGCGTTTAGATCACTTTTCGT 59.321 43.478 0.00 0.00 36.90 3.85
670 2063 4.151867 GGAGCGTTTAGATCACTTTTCGTT 59.848 41.667 0.00 0.00 36.90 3.85
671 2064 5.333875 GGAGCGTTTAGATCACTTTTCGTTT 60.334 40.000 0.00 0.00 36.90 3.60
672 2065 6.128742 GGAGCGTTTAGATCACTTTTCGTTTA 60.129 38.462 0.00 0.00 36.90 2.01
673 2066 6.818416 AGCGTTTAGATCACTTTTCGTTTAG 58.182 36.000 0.00 0.00 0.00 1.85
674 2067 6.643770 AGCGTTTAGATCACTTTTCGTTTAGA 59.356 34.615 0.00 0.00 0.00 2.10
675 2068 7.331193 AGCGTTTAGATCACTTTTCGTTTAGAT 59.669 33.333 0.00 0.00 0.00 1.98
676 2069 7.631368 GCGTTTAGATCACTTTTCGTTTAGATC 59.369 37.037 0.00 0.00 33.79 2.75
677 2070 8.644619 CGTTTAGATCACTTTTCGTTTAGATCA 58.355 33.333 0.00 0.00 35.52 2.92
678 2071 9.742552 GTTTAGATCACTTTTCGTTTAGATCAC 57.257 33.333 0.00 0.00 35.52 3.06
679 2072 9.706691 TTTAGATCACTTTTCGTTTAGATCACT 57.293 29.630 0.00 0.00 35.52 3.41
680 2073 9.706691 TTAGATCACTTTTCGTTTAGATCACTT 57.293 29.630 0.00 0.00 35.52 3.16
681 2074 8.608844 AGATCACTTTTCGTTTAGATCACTTT 57.391 30.769 0.00 0.00 35.52 2.66
682 2075 9.706691 AGATCACTTTTCGTTTAGATCACTTTA 57.293 29.630 0.00 0.00 35.52 1.85
689 2082 9.595823 TTTTCGTTTAGATCACTTTATAGAGGG 57.404 33.333 0.00 0.00 0.00 4.30
690 2083 7.286215 TCGTTTAGATCACTTTATAGAGGGG 57.714 40.000 0.00 0.00 0.00 4.79
691 2084 6.267014 TCGTTTAGATCACTTTATAGAGGGGG 59.733 42.308 0.00 0.00 0.00 5.40
692 2085 6.041751 CGTTTAGATCACTTTATAGAGGGGGT 59.958 42.308 0.00 0.00 0.00 4.95
693 2086 7.232127 CGTTTAGATCACTTTATAGAGGGGGTA 59.768 40.741 0.00 0.00 0.00 3.69
694 2087 8.931568 GTTTAGATCACTTTATAGAGGGGGTAA 58.068 37.037 0.00 0.00 0.00 2.85
695 2088 9.684702 TTTAGATCACTTTATAGAGGGGGTAAT 57.315 33.333 0.00 0.00 0.00 1.89
723 2116 5.843673 TTTTGAGCGGGCATATCAAATAA 57.156 34.783 9.92 0.00 41.24 1.40
735 2128 9.593134 GGGCATATCAAATAATTTTTACACACA 57.407 29.630 0.00 0.00 0.00 3.72
754 2147 2.660258 AAGTCGGCACACTCCACACC 62.660 60.000 0.00 0.00 0.00 4.16
810 2203 1.067582 CGACCCTTAGCCGTCCATC 59.932 63.158 0.00 0.00 0.00 3.51
812 2205 0.831307 GACCCTTAGCCGTCCATCTT 59.169 55.000 0.00 0.00 0.00 2.40
1146 2548 2.701780 GCTCTCCTTCGTGCTCGGA 61.702 63.158 8.49 0.00 37.69 4.55
1200 2602 4.496336 GAGGCCAGCGCATCCCTT 62.496 66.667 11.47 0.00 39.93 3.95
1216 2618 3.905968 TCCCTTCTCATCGGTACATACA 58.094 45.455 0.00 0.00 0.00 2.29
1217 2619 4.480115 TCCCTTCTCATCGGTACATACAT 58.520 43.478 0.00 0.00 0.00 2.29
1218 2620 5.637127 TCCCTTCTCATCGGTACATACATA 58.363 41.667 0.00 0.00 0.00 2.29
1219 2621 5.475909 TCCCTTCTCATCGGTACATACATAC 59.524 44.000 0.00 0.00 0.00 2.39
1228 2909 2.300723 GGTACATACATACCCATCCGCA 59.699 50.000 0.00 0.00 39.05 5.69
1296 2977 3.898741 GGCAACTAGCTAGGGATTCTAGT 59.101 47.826 24.35 0.00 45.55 2.57
1297 2978 4.021807 GGCAACTAGCTAGGGATTCTAGTC 60.022 50.000 24.35 3.30 45.55 2.59
1310 3008 3.402058 TTCTAGTCTAAGTCTTCGCGC 57.598 47.619 0.00 0.00 0.00 6.86
1345 3920 2.094752 CGATTTTGATCCCGTGCCTTTT 60.095 45.455 0.00 0.00 0.00 2.27
1434 4016 3.058016 CGTGAATGATTCTGCCAGTGTTT 60.058 43.478 6.73 0.00 0.00 2.83
1455 4037 1.135939 CGACGAGTGGTGCGTGATA 59.864 57.895 0.00 0.00 42.77 2.15
1494 4076 7.821359 CGAGGATATAGGATGAACATTGTGAAT 59.179 37.037 0.00 0.00 0.00 2.57
1496 4078 7.821359 AGGATATAGGATGAACATTGTGAATCG 59.179 37.037 0.00 0.00 0.00 3.34
1497 4079 5.679734 ATAGGATGAACATTGTGAATCGC 57.320 39.130 0.00 0.00 0.00 4.58
1498 4080 3.614092 AGGATGAACATTGTGAATCGCT 58.386 40.909 0.00 0.00 0.00 4.93
1499 4081 3.624861 AGGATGAACATTGTGAATCGCTC 59.375 43.478 0.00 0.00 0.00 5.03
1500 4082 3.624861 GGATGAACATTGTGAATCGCTCT 59.375 43.478 0.00 0.00 0.00 4.09
1501 4083 4.495349 GGATGAACATTGTGAATCGCTCTG 60.495 45.833 0.00 0.00 0.00 3.35
1502 4084 3.402110 TGAACATTGTGAATCGCTCTGT 58.598 40.909 0.00 0.00 0.00 3.41
1631 4223 2.526304 TCAGTTTTACTGCTGCGACT 57.474 45.000 1.98 0.00 45.54 4.18
1755 4347 4.854291 TGCCATTTGCGTTTATTTTAGTCG 59.146 37.500 0.00 0.00 45.60 4.18
2217 4813 5.577100 AGGTATAGGCTCCGATACAATACA 58.423 41.667 17.09 0.00 36.62 2.29
2294 4890 7.325725 ACTACCCTTAAAGTAGTTCCACAAT 57.674 36.000 10.71 0.00 46.41 2.71
2295 4891 8.439964 ACTACCCTTAAAGTAGTTCCACAATA 57.560 34.615 10.71 0.00 46.41 1.90
2296 4892 9.054580 ACTACCCTTAAAGTAGTTCCACAATAT 57.945 33.333 10.71 0.00 46.41 1.28
2474 5071 6.599445 AGCTGAACATGCTAAGAGGAATTAT 58.401 36.000 0.00 0.00 39.21 1.28
2528 5125 6.538742 GGTAGTACTAACACACATGCATTCAT 59.461 38.462 13.24 0.00 0.00 2.57
2698 5295 3.572255 GGGTTGAGAAGCAAATGTAACCA 59.428 43.478 0.00 0.00 38.44 3.67
2709 5306 5.719085 AGCAAATGTAACCATTGATTGGGTA 59.281 36.000 0.00 0.00 46.56 3.69
2910 5508 1.011333 AAAGTTTGACACACGACGGG 58.989 50.000 0.00 0.00 0.00 5.28
3706 6345 2.616376 TGTTGAATTGTTGAGGTCCACG 59.384 45.455 0.00 0.00 0.00 4.94
3793 6432 3.977427 ACCATTCTTTTCAAACTTCGGC 58.023 40.909 0.00 0.00 0.00 5.54
4216 6856 5.670485 TCGGTTCTAAATGATGCTGTATGT 58.330 37.500 0.00 0.00 0.00 2.29
4373 7014 5.659440 TTTCTTTGTGTGCTTCCTTTCTT 57.341 34.783 0.00 0.00 0.00 2.52
4722 7365 3.813166 TCCTCTACTTTGCCTTTTGTTCG 59.187 43.478 0.00 0.00 0.00 3.95
5011 7654 5.365619 ACTTGGATTATGGCGGTTAAGTAG 58.634 41.667 0.00 0.00 0.00 2.57
5043 7686 5.625921 ACTTCCTTAACTGTCGAGAGTAC 57.374 43.478 16.45 0.00 0.00 2.73
5297 7940 9.593134 AACTAGAGTTTCTCATATAAGCAACTG 57.407 33.333 0.00 0.00 33.70 3.16
5339 7982 7.063593 TCTACAGCTTACATAATCTGGAGAGT 58.936 38.462 11.67 0.00 41.77 3.24
5394 8037 6.770746 AAGTCGTAAGCCTATCTACTTTGA 57.229 37.500 0.00 0.00 37.18 2.69
5395 8038 6.963083 AGTCGTAAGCCTATCTACTTTGAT 57.037 37.500 0.00 0.00 37.18 2.57
5430 8073 8.499162 CATTTATAGGTTGCTATCAGTAACTGC 58.501 37.037 7.01 0.00 40.11 4.40
5520 8163 4.679654 CGGGATTGTAAGTTTCAGTTTTGC 59.320 41.667 0.00 0.00 0.00 3.68
5542 8185 4.083271 GCGAACTCTGCCTTGTATTTCTTT 60.083 41.667 0.00 0.00 0.00 2.52
5585 8228 7.621796 ACTTAGTTACTGAATTTCTACTGGGG 58.378 38.462 0.00 0.00 0.00 4.96
5605 8248 4.674281 GGTTGTAACACCCAAAATCCAA 57.326 40.909 0.00 0.00 0.00 3.53
5606 8249 4.627058 GGTTGTAACACCCAAAATCCAAG 58.373 43.478 0.00 0.00 0.00 3.61
5608 8251 5.011635 GGTTGTAACACCCAAAATCCAAGAT 59.988 40.000 0.00 0.00 0.00 2.40
5609 8252 6.463755 GGTTGTAACACCCAAAATCCAAGATT 60.464 38.462 0.00 0.00 0.00 2.40
5610 8253 6.095432 TGTAACACCCAAAATCCAAGATTG 57.905 37.500 0.00 0.00 0.00 2.67
5674 8317 9.722056 GGCAAAGATACTTACATGATGTTAAAG 57.278 33.333 2.29 4.93 0.00 1.85
5803 8446 9.376075 CATTCATGTAAGTCAGATTCTACTTGT 57.624 33.333 13.95 0.00 36.62 3.16
5817 8460 9.973450 AGATTCTACTTGTAGCATGTATAACTG 57.027 33.333 3.10 0.00 0.00 3.16
5967 8610 5.843673 TCTGCACCAACTTGTGATTTTTA 57.156 34.783 0.00 0.00 38.55 1.52
6120 8763 2.837498 TGTGATGTGTCAGACTTGGTG 58.163 47.619 1.31 0.00 34.36 4.17
6121 8764 2.170397 TGTGATGTGTCAGACTTGGTGT 59.830 45.455 1.31 0.00 34.36 4.16
6189 8832 3.008266 TGTTAGGCGCCTTACTAGGTTTT 59.992 43.478 36.95 13.70 44.00 2.43
6190 8833 2.873094 AGGCGCCTTACTAGGTTTTT 57.127 45.000 27.08 0.00 44.00 1.94
6389 9032 9.264719 GTTTAAGCTACTAGAACTTGGTGTTTA 57.735 33.333 0.00 0.00 39.30 2.01
6390 9033 9.835389 TTTAAGCTACTAGAACTTGGTGTTTAA 57.165 29.630 0.00 0.00 39.30 1.52
6593 9236 4.848357 CAACATCCCAGGTACTTCTGATT 58.152 43.478 1.10 0.00 34.60 2.57
6707 9350 8.669394 CAGTGTTGAATAGCAATGCATATATG 57.331 34.615 8.35 8.45 39.03 1.78
7089 9735 3.565482 TCACTGCTCAAGTAAAAAGCCAG 59.435 43.478 0.00 0.00 36.83 4.85
7297 9944 5.793817 TCTAGAAACTATGCTGCTTGTTCA 58.206 37.500 0.00 0.00 0.00 3.18
7316 9963 8.687824 TTGTTCAACTTGAATTCTTCTTCAAC 57.312 30.769 7.47 4.36 39.55 3.18
7324 9971 5.364778 TGAATTCTTCTTCAACGAGTTCCA 58.635 37.500 7.05 0.00 32.35 3.53
7379 10026 4.668576 TTCTCTATTGTTTCTTGCTGCG 57.331 40.909 0.00 0.00 0.00 5.18
7595 10243 5.535333 ACATCAAGTGAAAATGAGCCAAAG 58.465 37.500 0.00 0.00 0.00 2.77
7644 10292 5.578776 AGAAGTTTCTAAAAACCGTGCAAG 58.421 37.500 0.00 0.00 44.87 4.01
7705 10353 6.372103 CCATGCAATTTAAGGAGCAAATTCAA 59.628 34.615 0.00 0.00 40.76 2.69
7707 10355 7.599630 TGCAATTTAAGGAGCAAATTCAATC 57.400 32.000 0.00 0.00 34.22 2.67
7713 10361 8.585471 TTTAAGGAGCAAATTCAATCTCATCT 57.415 30.769 0.00 0.00 0.00 2.90
7736 10384 7.810658 TCTGCAAGACATGAAAAAGTAGAATC 58.189 34.615 0.00 0.00 38.67 2.52
7745 10396 8.665685 ACATGAAAAAGTAGAATCCGTATTGAC 58.334 33.333 0.00 0.00 0.00 3.18
7756 10407 5.756195 ATCCGTATTGACATTGGATTGTG 57.244 39.130 0.00 0.00 36.00 3.33
7774 10425 9.072375 TGGATTGTGTTATTCATTGTTCAGTAA 57.928 29.630 0.00 0.00 0.00 2.24
7775 10426 9.906660 GGATTGTGTTATTCATTGTTCAGTAAA 57.093 29.630 0.00 0.00 0.00 2.01
7829 10568 7.760131 ATTAAATTTGATCCTTGCATCGTTG 57.240 32.000 0.00 0.00 0.00 4.10
7841 10580 5.296780 CCTTGCATCGTTGTATAACATTCCT 59.703 40.000 3.13 0.00 36.58 3.36
7842 10581 6.183360 CCTTGCATCGTTGTATAACATTCCTT 60.183 38.462 3.13 0.00 36.58 3.36
7859 10598 6.125561 ACATTCCTTCCCTTCCCTAGTATCTA 60.126 42.308 0.00 0.00 0.00 1.98
7860 10599 5.336491 TCCTTCCCTTCCCTAGTATCTAC 57.664 47.826 0.00 0.00 0.00 2.59
7861 10600 4.989545 TCCTTCCCTTCCCTAGTATCTACT 59.010 45.833 0.00 0.00 40.24 2.57
7862 10601 5.074790 TCCTTCCCTTCCCTAGTATCTACTC 59.925 48.000 0.00 0.00 37.73 2.59
7863 10602 5.326900 CTTCCCTTCCCTAGTATCTACTCC 58.673 50.000 0.00 0.00 37.73 3.85
7864 10603 3.661654 TCCCTTCCCTAGTATCTACTCCC 59.338 52.174 0.00 0.00 37.73 4.30
7865 10604 3.663632 CCCTTCCCTAGTATCTACTCCCT 59.336 52.174 0.00 0.00 37.73 4.20
7866 10605 4.264038 CCCTTCCCTAGTATCTACTCCCTC 60.264 54.167 0.00 0.00 37.73 4.30
7867 10606 4.604490 CCTTCCCTAGTATCTACTCCCTCT 59.396 50.000 0.00 0.00 37.73 3.69
7868 10607 5.515886 CCTTCCCTAGTATCTACTCCCTCTG 60.516 52.000 0.00 0.00 37.73 3.35
7869 10608 4.579162 TCCCTAGTATCTACTCCCTCTGT 58.421 47.826 0.00 0.00 37.73 3.41
7870 10609 4.982956 TCCCTAGTATCTACTCCCTCTGTT 59.017 45.833 0.00 0.00 37.73 3.16
7871 10610 5.073417 TCCCTAGTATCTACTCCCTCTGTTC 59.927 48.000 0.00 0.00 37.73 3.18
7872 10611 5.318630 CCTAGTATCTACTCCCTCTGTTCC 58.681 50.000 0.00 0.00 37.73 3.62
7873 10612 5.073965 CCTAGTATCTACTCCCTCTGTTCCT 59.926 48.000 0.00 0.00 37.73 3.36
7874 10613 6.272792 CCTAGTATCTACTCCCTCTGTTCCTA 59.727 46.154 0.00 0.00 37.73 2.94
7875 10614 6.593759 AGTATCTACTCCCTCTGTTCCTAA 57.406 41.667 0.00 0.00 0.00 2.69
7876 10615 6.982899 AGTATCTACTCCCTCTGTTCCTAAA 58.017 40.000 0.00 0.00 0.00 1.85
7877 10616 7.597327 AGTATCTACTCCCTCTGTTCCTAAAT 58.403 38.462 0.00 0.00 0.00 1.40
7878 10617 8.734763 AGTATCTACTCCCTCTGTTCCTAAATA 58.265 37.037 0.00 0.00 0.00 1.40
7879 10618 9.536510 GTATCTACTCCCTCTGTTCCTAAATAT 57.463 37.037 0.00 0.00 0.00 1.28
7881 10620 8.855804 TCTACTCCCTCTGTTCCTAAATATTT 57.144 34.615 5.89 5.89 0.00 1.40
7882 10621 8.705594 TCTACTCCCTCTGTTCCTAAATATTTG 58.294 37.037 11.05 1.40 0.00 2.32
7883 10622 7.272144 ACTCCCTCTGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 0.00 2.83
7884 10623 7.339482 ACTCCCTCTGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 0.00 3.18
7885 10624 7.182930 ACTCCCTCTGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 0.00 3.41
7886 10625 7.928873 TCCCTCTGTTCCTAAATATTTGTCTT 58.071 34.615 11.05 0.00 0.00 3.01
7887 10626 8.390921 TCCCTCTGTTCCTAAATATTTGTCTTT 58.609 33.333 11.05 0.00 0.00 2.52
7888 10627 9.025041 CCCTCTGTTCCTAAATATTTGTCTTTT 57.975 33.333 11.05 0.00 0.00 2.27
7918 10657 9.706691 ATATTTCAAATAGACTACCACATACGG 57.293 33.333 0.00 0.00 0.00 4.02
7919 10658 6.778834 TTCAAATAGACTACCACATACGGA 57.221 37.500 0.00 0.00 0.00 4.69
7920 10659 6.971726 TCAAATAGACTACCACATACGGAT 57.028 37.500 0.00 0.00 0.00 4.18
7921 10660 6.745116 TCAAATAGACTACCACATACGGATG 58.255 40.000 5.94 5.94 39.16 3.51
7923 10662 7.503230 TCAAATAGACTACCACATACGGATGTA 59.497 37.037 14.23 0.00 44.82 2.29
7924 10663 8.304596 CAAATAGACTACCACATACGGATGTAT 58.695 37.037 14.23 7.46 44.82 2.29
7925 10664 9.524496 AAATAGACTACCACATACGGATGTATA 57.476 33.333 14.23 8.27 44.82 1.47
7926 10665 9.696572 AATAGACTACCACATACGGATGTATAT 57.303 33.333 14.23 4.37 44.82 0.86
7928 10667 8.734218 AGACTACCACATACGGATGTATATAG 57.266 38.462 14.23 16.35 44.82 1.31
7929 10668 8.546322 AGACTACCACATACGGATGTATATAGA 58.454 37.037 22.62 5.04 44.82 1.98
7930 10669 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
7931 10670 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
7932 10671 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
7934 10673 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
7962 10701 9.719355 TTAGAGTGTAGATTCACTTATTTTGCA 57.281 29.630 0.98 0.00 46.81 4.08
7963 10702 8.034058 AGAGTGTAGATTCACTTATTTTGCAC 57.966 34.615 0.98 0.00 46.81 4.57
7964 10703 7.119846 AGAGTGTAGATTCACTTATTTTGCACC 59.880 37.037 0.98 0.00 46.81 5.01
7965 10704 6.021596 GTGTAGATTCACTTATTTTGCACCG 58.978 40.000 0.00 0.00 35.68 4.94
7966 10705 5.703592 TGTAGATTCACTTATTTTGCACCGT 59.296 36.000 0.00 0.00 0.00 4.83
7967 10706 6.874664 TGTAGATTCACTTATTTTGCACCGTA 59.125 34.615 0.00 0.00 0.00 4.02
7968 10707 7.551262 TGTAGATTCACTTATTTTGCACCGTAT 59.449 33.333 0.00 0.00 0.00 3.06
7969 10708 6.785191 AGATTCACTTATTTTGCACCGTATG 58.215 36.000 0.00 0.00 0.00 2.39
7970 10709 5.950758 TTCACTTATTTTGCACCGTATGT 57.049 34.783 0.00 0.00 0.00 2.29
7971 10710 7.551262 AGATTCACTTATTTTGCACCGTATGTA 59.449 33.333 0.00 0.00 0.00 2.29
7972 10711 6.656314 TCACTTATTTTGCACCGTATGTAG 57.344 37.500 0.00 0.00 0.00 2.74
7973 10712 6.167685 TCACTTATTTTGCACCGTATGTAGT 58.832 36.000 0.00 0.00 0.00 2.73
7974 10713 6.311935 TCACTTATTTTGCACCGTATGTAGTC 59.688 38.462 0.00 0.00 0.00 2.59
7975 10714 6.091577 CACTTATTTTGCACCGTATGTAGTCA 59.908 38.462 0.00 0.00 0.00 3.41
7976 10715 4.939509 ATTTTGCACCGTATGTAGTCAC 57.060 40.909 0.00 0.00 0.00 3.67
7977 10716 3.671008 TTTGCACCGTATGTAGTCACT 57.329 42.857 0.00 0.00 0.00 3.41
7978 10717 2.647529 TGCACCGTATGTAGTCACTG 57.352 50.000 0.00 0.00 0.00 3.66
7979 10718 1.890489 TGCACCGTATGTAGTCACTGT 59.110 47.619 0.00 0.00 0.00 3.55
7980 10719 2.297880 TGCACCGTATGTAGTCACTGTT 59.702 45.455 0.00 0.00 0.00 3.16
7981 10720 2.666508 GCACCGTATGTAGTCACTGTTG 59.333 50.000 0.00 0.00 0.00 3.33
7982 10721 3.613193 GCACCGTATGTAGTCACTGTTGA 60.613 47.826 0.00 0.00 0.00 3.18
7983 10722 4.552355 CACCGTATGTAGTCACTGTTGAA 58.448 43.478 0.00 0.00 31.90 2.69
7984 10723 4.986034 CACCGTATGTAGTCACTGTTGAAA 59.014 41.667 0.00 0.00 31.90 2.69
7985 10724 5.637810 CACCGTATGTAGTCACTGTTGAAAT 59.362 40.000 0.00 0.00 31.90 2.17
7986 10725 5.867716 ACCGTATGTAGTCACTGTTGAAATC 59.132 40.000 0.00 0.00 31.90 2.17
7987 10726 6.100004 CCGTATGTAGTCACTGTTGAAATCT 58.900 40.000 0.00 0.00 31.90 2.40
7988 10727 6.590292 CCGTATGTAGTCACTGTTGAAATCTT 59.410 38.462 0.00 0.00 31.90 2.40
7989 10728 7.758076 CCGTATGTAGTCACTGTTGAAATCTTA 59.242 37.037 0.00 0.00 31.90 2.10
7990 10729 8.799091 CGTATGTAGTCACTGTTGAAATCTTAG 58.201 37.037 0.00 0.00 31.90 2.18
7991 10730 9.856488 GTATGTAGTCACTGTTGAAATCTTAGA 57.144 33.333 0.00 0.00 31.90 2.10
7993 10732 9.778741 ATGTAGTCACTGTTGAAATCTTAGAAA 57.221 29.630 0.00 0.00 31.90 2.52
7994 10733 9.261180 TGTAGTCACTGTTGAAATCTTAGAAAG 57.739 33.333 0.00 0.00 31.90 2.62
7995 10734 9.477484 GTAGTCACTGTTGAAATCTTAGAAAGA 57.523 33.333 0.00 0.00 36.17 2.52
7996 10735 8.371770 AGTCACTGTTGAAATCTTAGAAAGAC 57.628 34.615 0.00 0.00 35.11 3.01
7997 10736 7.987458 AGTCACTGTTGAAATCTTAGAAAGACA 59.013 33.333 0.00 0.00 35.11 3.41
7998 10737 8.612619 GTCACTGTTGAAATCTTAGAAAGACAA 58.387 33.333 0.00 0.00 35.11 3.18
7999 10738 9.173021 TCACTGTTGAAATCTTAGAAAGACAAA 57.827 29.630 0.00 0.00 41.01 2.83
8000 10739 9.956720 CACTGTTGAAATCTTAGAAAGACAAAT 57.043 29.630 0.00 0.00 41.01 2.32
8015 10754 9.413734 AGAAAGACAAATATTTAGGAATGGAGG 57.586 33.333 0.00 0.00 0.00 4.30
8016 10755 8.539117 AAAGACAAATATTTAGGAATGGAGGG 57.461 34.615 0.00 0.00 0.00 4.30
8017 10756 7.465900 AGACAAATATTTAGGAATGGAGGGA 57.534 36.000 0.00 0.00 0.00 4.20
8018 10757 7.521669 AGACAAATATTTAGGAATGGAGGGAG 58.478 38.462 0.00 0.00 0.00 4.30
8019 10758 7.129504 AGACAAATATTTAGGAATGGAGGGAGT 59.870 37.037 0.00 0.00 0.00 3.85
8029 10768 5.545723 AGGAATGGAGGGAGTACAGATTATG 59.454 44.000 0.00 0.00 0.00 1.90
8156 10896 0.034670 ATGCTTTCCCTCCTGCAGAC 60.035 55.000 17.39 0.00 38.87 3.51
8181 10921 3.648339 AACATGACAATTGGCTCACAC 57.352 42.857 13.62 0.00 0.00 3.82
8232 10973 7.497249 AGGCTATGCTCTTTATAAACTTGAGTG 59.503 37.037 12.16 0.00 0.00 3.51
8233 10974 7.128976 GCTATGCTCTTTATAAACTTGAGTGC 58.871 38.462 12.16 7.60 0.00 4.40
8248 10989 2.008329 GAGTGCTCCTTGCTGATTGAG 58.992 52.381 0.00 0.00 43.37 3.02
8339 11080 3.122613 GCTATAGCTAATGACTGCAAGCG 59.877 47.826 17.75 0.00 39.94 4.68
8352 11093 2.978010 AAGCGCAAAGTGACCGGG 60.978 61.111 11.47 0.00 0.00 5.73
8368 11109 1.135228 CCGGGTTTTTGGCGGATTTAG 60.135 52.381 0.00 0.00 0.00 1.85
8369 11110 1.135228 CGGGTTTTTGGCGGATTTAGG 60.135 52.381 0.00 0.00 0.00 2.69
8386 11127 1.356124 AGGCAAAGAAGCTCTCAGGA 58.644 50.000 0.00 0.00 34.17 3.86
8398 11139 0.407528 TCTCAGGAGCTGGTGAGACT 59.592 55.000 17.13 0.00 43.41 3.24
8404 11145 2.740055 GCTGGTGAGACTGCCACG 60.740 66.667 0.00 0.00 35.48 4.94
8414 11155 2.363711 GACTGCCACGTGTCAGACCA 62.364 60.000 31.28 9.35 34.57 4.02
8462 11203 6.707273 TTAGGGACATTAGGGTAGTTGTTT 57.293 37.500 0.00 0.00 0.00 2.83
8613 11824 5.080969 TCCTATGTAACAGTACCAGTTGC 57.919 43.478 10.60 9.82 33.06 4.17
8751 11962 3.667497 TTCTGTCTGCGTTGAGAGAAT 57.333 42.857 12.64 0.00 40.09 2.40
8864 12082 3.547868 CGTACTGAGGATGTTGATTCGTG 59.452 47.826 0.00 0.00 0.00 4.35
8872 12090 1.154413 GTTGATTCGTGCTGTGGCG 60.154 57.895 0.00 0.00 42.25 5.69
8891 12109 1.679944 CGGAAGAGGTGGCATCAATGT 60.680 52.381 0.00 0.00 0.00 2.71
8955 12173 4.085517 GCGATGTTTACGTCTGAGCTTATC 60.086 45.833 0.00 0.00 0.00 1.75
8981 12254 5.020132 AGCTCTAGTAATCTTGTGTGTCCT 58.980 41.667 0.00 0.00 0.00 3.85
8982 12255 5.126384 AGCTCTAGTAATCTTGTGTGTCCTC 59.874 44.000 0.00 0.00 0.00 3.71
8983 12256 5.126384 GCTCTAGTAATCTTGTGTGTCCTCT 59.874 44.000 0.00 0.00 0.00 3.69
8993 12266 2.213499 GTGTGTCCTCTTGTTGGTCAG 58.787 52.381 0.00 0.00 0.00 3.51
9028 12301 2.514592 CCCGCTGGCGATTGACAT 60.515 61.111 16.79 0.00 42.83 3.06
9033 12306 1.089920 GCTGGCGATTGACATGAACT 58.910 50.000 0.00 0.00 27.97 3.01
9082 12355 1.525619 GCTTCGTTCACAAGTAAGCGT 59.474 47.619 0.00 0.00 33.91 5.07
9092 12365 4.632251 TCACAAGTAAGCGTGTCTGAAAAA 59.368 37.500 0.00 0.00 35.21 1.94
9197 12476 5.351189 GTCACACAAGATGCCAAAACTTTTT 59.649 36.000 0.00 0.00 0.00 1.94
9198 12477 5.350914 TCACACAAGATGCCAAAACTTTTTG 59.649 36.000 7.36 7.36 45.34 2.44
9224 12503 4.874396 CGTGGAAGGTTCTTTCCCTTATAC 59.126 45.833 10.42 2.38 44.93 1.47
9225 12504 5.338137 CGTGGAAGGTTCTTTCCCTTATACT 60.338 44.000 10.42 0.00 44.93 2.12
9226 12505 6.127253 CGTGGAAGGTTCTTTCCCTTATACTA 60.127 42.308 10.42 0.00 44.93 1.82
9227 12506 7.046652 GTGGAAGGTTCTTTCCCTTATACTAC 58.953 42.308 10.42 0.00 44.93 2.73
9228 12507 6.964086 TGGAAGGTTCTTTCCCTTATACTACT 59.036 38.462 10.42 0.00 44.93 2.57
9229 12508 8.124430 TGGAAGGTTCTTTCCCTTATACTACTA 58.876 37.037 10.42 0.00 44.93 1.82
9230 12509 8.420222 GGAAGGTTCTTTCCCTTATACTACTAC 58.580 40.741 2.82 0.00 42.37 2.73
9231 12510 8.906238 AAGGTTCTTTCCCTTATACTACTACA 57.094 34.615 0.00 0.00 40.53 2.74
9232 12511 9.503369 AAGGTTCTTTCCCTTATACTACTACAT 57.497 33.333 0.00 0.00 40.53 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
158 315 1.804151 CCAAATGGTTCACACGACGAT 59.196 47.619 0.00 0.00 0.00 3.73
212 485 1.647084 GCTGGTTCACACGACAACC 59.353 57.895 0.00 0.00 42.28 3.77
215 488 2.110213 GGGCTGGTTCACACGACA 59.890 61.111 0.00 0.00 0.00 4.35
218 491 2.669569 CCTGGGCTGGTTCACACG 60.670 66.667 0.00 0.00 0.00 4.49
219 492 2.282462 CCCTGGGCTGGTTCACAC 60.282 66.667 0.00 0.00 0.00 3.82
223 496 2.276740 CATCCCCTGGGCTGGTTC 59.723 66.667 7.39 0.00 34.68 3.62
224 497 4.066139 GCATCCCCTGGGCTGGTT 62.066 66.667 7.39 0.00 32.48 3.67
226 499 3.605412 TTTGCATCCCCTGGGCTGG 62.605 63.158 7.39 0.00 32.48 4.85
227 500 2.037687 TTTGCATCCCCTGGGCTG 59.962 61.111 7.39 8.19 34.76 4.85
228 501 2.361771 CTTTGCATCCCCTGGGCT 59.638 61.111 7.39 0.00 34.68 5.19
230 503 0.033208 TAAGCTTTGCATCCCCTGGG 60.033 55.000 3.20 5.50 0.00 4.45
231 504 1.064463 TCTAAGCTTTGCATCCCCTGG 60.064 52.381 3.20 0.00 0.00 4.45
232 505 2.425143 TCTAAGCTTTGCATCCCCTG 57.575 50.000 3.20 0.00 0.00 4.45
233 506 2.511218 TCATCTAAGCTTTGCATCCCCT 59.489 45.455 3.20 0.00 0.00 4.79
234 507 2.883386 CTCATCTAAGCTTTGCATCCCC 59.117 50.000 3.20 0.00 0.00 4.81
236 509 4.320348 GCATCTCATCTAAGCTTTGCATCC 60.320 45.833 3.20 0.00 0.00 3.51
237 510 4.320348 GGCATCTCATCTAAGCTTTGCATC 60.320 45.833 15.24 0.00 0.00 3.91
238 511 3.568853 GGCATCTCATCTAAGCTTTGCAT 59.431 43.478 15.24 3.31 0.00 3.96
241 514 2.547211 CGGGCATCTCATCTAAGCTTTG 59.453 50.000 3.20 1.97 0.00 2.77
415 1807 2.031919 TGGTCAGCGCCGTTTGAT 59.968 55.556 2.29 0.00 0.00 2.57
465 1857 2.573083 CCAACCCCGTTTGCTGCAT 61.573 57.895 1.84 0.00 0.00 3.96
532 1925 7.015195 ACAATTACATTTCAGCCCTTAGTTGTT 59.985 33.333 0.00 0.00 0.00 2.83
625 2018 9.397280 GCTCCTATATTTCTTTACAAAAGGAGT 57.603 33.333 14.22 0.40 39.90 3.85
626 2019 8.552034 CGCTCCTATATTTCTTTACAAAAGGAG 58.448 37.037 9.65 9.65 40.49 3.69
627 2020 8.044908 ACGCTCCTATATTTCTTTACAAAAGGA 58.955 33.333 0.00 0.00 0.00 3.36
628 2021 8.209917 ACGCTCCTATATTTCTTTACAAAAGG 57.790 34.615 0.00 0.00 0.00 3.11
636 2029 9.262358 GTGATCTAAACGCTCCTATATTTCTTT 57.738 33.333 0.00 0.00 0.00 2.52
637 2030 8.643324 AGTGATCTAAACGCTCCTATATTTCTT 58.357 33.333 0.00 0.00 0.00 2.52
638 2031 8.184304 AGTGATCTAAACGCTCCTATATTTCT 57.816 34.615 0.00 0.00 0.00 2.52
639 2032 8.819643 AAGTGATCTAAACGCTCCTATATTTC 57.180 34.615 0.00 0.00 0.00 2.17
640 2033 9.614792 AAAAGTGATCTAAACGCTCCTATATTT 57.385 29.630 0.00 0.00 0.00 1.40
641 2034 9.262358 GAAAAGTGATCTAAACGCTCCTATATT 57.738 33.333 0.00 0.00 0.00 1.28
642 2035 7.595502 CGAAAAGTGATCTAAACGCTCCTATAT 59.404 37.037 0.00 0.00 0.00 0.86
643 2036 6.916387 CGAAAAGTGATCTAAACGCTCCTATA 59.084 38.462 0.00 0.00 0.00 1.31
644 2037 5.749109 CGAAAAGTGATCTAAACGCTCCTAT 59.251 40.000 0.00 0.00 0.00 2.57
645 2038 5.100259 CGAAAAGTGATCTAAACGCTCCTA 58.900 41.667 0.00 0.00 0.00 2.94
646 2039 3.927142 CGAAAAGTGATCTAAACGCTCCT 59.073 43.478 0.00 0.00 0.00 3.69
647 2040 3.678548 ACGAAAAGTGATCTAAACGCTCC 59.321 43.478 0.00 0.00 0.00 4.70
648 2041 4.905412 ACGAAAAGTGATCTAAACGCTC 57.095 40.909 0.00 0.00 0.00 5.03
649 2042 5.668558 AAACGAAAAGTGATCTAAACGCT 57.331 34.783 0.00 0.00 0.00 5.07
650 2043 6.814343 TCTAAACGAAAAGTGATCTAAACGC 58.186 36.000 0.00 0.00 0.00 4.84
651 2044 8.644619 TGATCTAAACGAAAAGTGATCTAAACG 58.355 33.333 0.00 0.00 33.45 3.60
652 2045 9.742552 GTGATCTAAACGAAAAGTGATCTAAAC 57.257 33.333 0.00 0.00 33.45 2.01
653 2046 9.706691 AGTGATCTAAACGAAAAGTGATCTAAA 57.293 29.630 0.00 0.00 33.45 1.85
654 2047 9.706691 AAGTGATCTAAACGAAAAGTGATCTAA 57.293 29.630 0.00 0.00 33.45 2.10
655 2048 9.706691 AAAGTGATCTAAACGAAAAGTGATCTA 57.293 29.630 0.00 0.00 33.45 1.98
656 2049 8.608844 AAAGTGATCTAAACGAAAAGTGATCT 57.391 30.769 0.00 0.00 33.45 2.75
663 2056 9.595823 CCCTCTATAAAGTGATCTAAACGAAAA 57.404 33.333 0.00 0.00 0.00 2.29
664 2057 8.202137 CCCCTCTATAAAGTGATCTAAACGAAA 58.798 37.037 0.00 0.00 0.00 3.46
665 2058 7.201974 CCCCCTCTATAAAGTGATCTAAACGAA 60.202 40.741 0.00 0.00 0.00 3.85
666 2059 6.267014 CCCCCTCTATAAAGTGATCTAAACGA 59.733 42.308 0.00 0.00 0.00 3.85
667 2060 6.041751 ACCCCCTCTATAAAGTGATCTAAACG 59.958 42.308 0.00 0.00 0.00 3.60
668 2061 7.376335 ACCCCCTCTATAAAGTGATCTAAAC 57.624 40.000 0.00 0.00 0.00 2.01
669 2062 9.684702 ATTACCCCCTCTATAAAGTGATCTAAA 57.315 33.333 0.00 0.00 0.00 1.85
701 2094 5.843673 TTATTTGATATGCCCGCTCAAAA 57.156 34.783 6.66 0.00 40.94 2.44
723 2116 3.378742 TGTGCCGACTTGTGTGTAAAAAT 59.621 39.130 0.00 0.00 0.00 1.82
735 2128 1.227556 GTGTGGAGTGTGCCGACTT 60.228 57.895 0.00 0.00 0.00 3.01
810 2203 3.584250 CTGCTGCGGTGTTGCGAAG 62.584 63.158 0.00 0.00 37.81 3.79
933 2326 2.202440 CTCGTCCGATGCGTTCGT 60.202 61.111 7.91 0.00 46.65 3.85
1200 2602 4.732065 TGGGTATGTATGTACCGATGAGA 58.268 43.478 0.00 0.00 44.14 3.27
1216 2618 0.687354 GATGGAGTGCGGATGGGTAT 59.313 55.000 0.00 0.00 0.00 2.73
1217 2619 1.407656 GGATGGAGTGCGGATGGGTA 61.408 60.000 0.00 0.00 0.00 3.69
1218 2620 2.746375 GGATGGAGTGCGGATGGGT 61.746 63.158 0.00 0.00 0.00 4.51
1219 2621 2.111878 GGATGGAGTGCGGATGGG 59.888 66.667 0.00 0.00 0.00 4.00
1228 2909 0.621862 GGAACCTCTGGGGATGGAGT 60.622 60.000 0.00 0.00 38.76 3.85
1266 2947 2.700897 CCTAGCTAGTTGCCAGTGGTAT 59.299 50.000 19.31 0.00 44.23 2.73
1269 2950 0.179000 CCCTAGCTAGTTGCCAGTGG 59.821 60.000 19.31 4.20 44.23 4.00
1296 2977 2.463592 TCGAGCGCGAAGACTTAGA 58.536 52.632 12.10 0.00 44.78 2.10
1310 3008 0.810031 AAATCGCACGGGGAATCGAG 60.810 55.000 0.00 0.00 34.30 4.04
1345 3920 0.828022 ACTCACTCACCGACCAAACA 59.172 50.000 0.00 0.00 0.00 2.83
1434 4016 3.359523 ACGCACCACTCGTCGCTA 61.360 61.111 0.00 0.00 34.84 4.26
1455 4037 6.836007 TCCTATATCCTCGCAATCATCATACT 59.164 38.462 0.00 0.00 0.00 2.12
1496 4078 2.093473 CAGTGCGCAGAGACAGAGC 61.093 63.158 12.22 0.00 0.00 4.09
1497 4079 0.319383 AACAGTGCGCAGAGACAGAG 60.319 55.000 12.22 0.00 0.00 3.35
1498 4080 0.104855 AAACAGTGCGCAGAGACAGA 59.895 50.000 12.22 0.00 0.00 3.41
1499 4081 0.940126 AAAACAGTGCGCAGAGACAG 59.060 50.000 12.22 0.00 0.00 3.51
1500 4082 0.657312 CAAAACAGTGCGCAGAGACA 59.343 50.000 12.22 0.00 0.00 3.41
1501 4083 0.657840 ACAAAACAGTGCGCAGAGAC 59.342 50.000 12.22 0.00 0.00 3.36
1502 4084 1.378531 AACAAAACAGTGCGCAGAGA 58.621 45.000 12.22 0.00 0.00 3.10
1631 4223 4.081752 ACAAGCAATTGAACCAACACTCAA 60.082 37.500 10.34 0.00 36.08 3.02
1755 4347 2.158943 AGGTAGCCGATCCTTTAAGCAC 60.159 50.000 0.00 0.00 0.00 4.40
1827 4419 0.599728 GCATTTTGGCAGCGGTTCAA 60.600 50.000 0.00 0.00 0.00 2.69
1929 4521 3.642848 AGACATTGGACTGCCACATTTTT 59.357 39.130 0.00 0.00 45.94 1.94
2330 4927 7.756614 TGACTAATTGAGCCTATACCTCTAGA 58.243 38.462 0.00 0.00 0.00 2.43
2474 5071 8.153221 TGTAATTCTCCTTCTAACCCACAATA 57.847 34.615 0.00 0.00 0.00 1.90
2679 5276 6.647334 TCAATGGTTACATTTGCTTCTCAA 57.353 33.333 0.00 0.00 44.69 3.02
2698 5295 7.228706 CCGTTAGCTAGATTTTACCCAATCAAT 59.771 37.037 0.00 0.00 35.85 2.57
2709 5306 2.026636 TGTGGCCCGTTAGCTAGATTTT 60.027 45.455 0.00 0.00 0.00 1.82
2850 5448 1.496060 AGACAGTGTGGTCTTGGACA 58.504 50.000 0.00 0.00 45.59 4.02
2910 5508 2.560542 TGGCAAATTACATGGGTCACAC 59.439 45.455 0.00 0.00 0.00 3.82
2920 5518 3.182887 AGGTTGGGATGGCAAATTACA 57.817 42.857 0.00 0.00 0.00 2.41
2964 5562 1.670949 TTCTCTAGCCAGCCTCTGCG 61.671 60.000 0.00 0.00 44.33 5.18
3165 5766 8.031277 ACTTTCTCAGCATTACAATTTCAATCC 58.969 33.333 0.00 0.00 0.00 3.01
3166 5767 8.857216 CACTTTCTCAGCATTACAATTTCAATC 58.143 33.333 0.00 0.00 0.00 2.67
3461 6063 9.679596 CATCAAAGATCGCACAAAATTAAAATC 57.320 29.630 0.00 0.00 0.00 2.17
3793 6432 2.823196 TTGCGAAAGTTATGATGGCG 57.177 45.000 0.00 0.00 0.00 5.69
3936 6575 2.586425 AGCAAGGTAGCTGCAAGAAAA 58.414 42.857 15.44 0.00 44.66 2.29
4373 7014 9.403583 ACGAATAGGGATTTTAAAGCAAGATTA 57.596 29.630 0.00 0.00 0.00 1.75
4773 7416 2.158579 ACAGGTTACCAACGGAAACCAT 60.159 45.455 3.51 0.00 44.21 3.55
4828 7471 9.979578 GCATGCTAGACTGCTATATCTATAATT 57.020 33.333 11.37 0.00 35.49 1.40
5043 7686 5.482006 TGATGATCCTACAGAAACACACTG 58.518 41.667 0.00 0.00 40.68 3.66
5049 7692 9.383519 TGTTCTAATTGATGATCCTACAGAAAC 57.616 33.333 0.00 0.00 0.00 2.78
5102 7745 4.855340 TCCCTTCTGGAACCATACAAATC 58.145 43.478 0.00 0.00 41.40 2.17
5126 7769 5.459762 CAGTTTTACCAGTGTGCATTTCAAG 59.540 40.000 0.00 0.00 0.00 3.02
5127 7770 5.105554 ACAGTTTTACCAGTGTGCATTTCAA 60.106 36.000 0.00 0.00 0.00 2.69
5132 7775 3.988379 CACAGTTTTACCAGTGTGCAT 57.012 42.857 0.00 0.00 40.40 3.96
5233 7876 9.688091 AGATGTGTTAGATCTTACTTCTCTACA 57.312 33.333 12.72 7.90 0.00 2.74
5289 7932 8.897872 ATGAAAATCAAGAAATTCAGTTGCTT 57.102 26.923 0.00 0.00 36.01 3.91
5297 7940 9.852091 AAGCTGTAGATGAAAATCAAGAAATTC 57.148 29.630 0.00 0.00 0.00 2.17
5339 7982 2.235898 AGGGAAAAGCACAAACAAGCAA 59.764 40.909 0.00 0.00 0.00 3.91
5417 8060 3.994392 ACACAAACGGCAGTTACTGATAG 59.006 43.478 17.40 8.41 40.18 2.08
5430 8073 5.390145 GCTAACATGTACCTAACACAAACGG 60.390 44.000 0.00 0.00 42.09 4.44
5485 8128 6.113411 ACTTACAATCCCGGTAAAGAGAATG 58.887 40.000 0.00 0.00 30.92 2.67
5520 8163 5.613358 AAAGAAATACAAGGCAGAGTTCG 57.387 39.130 0.00 0.00 0.00 3.95
5585 8228 5.523438 TCTTGGATTTTGGGTGTTACAAC 57.477 39.130 0.00 0.00 0.00 3.32
5602 8245 7.722363 AAGTTAAACTTGGTTACCAATCTTGG 58.278 34.615 17.85 7.97 44.67 3.61
5603 8246 9.673454 GTAAGTTAAACTTGGTTACCAATCTTG 57.327 33.333 17.85 8.35 43.07 3.02
5605 8248 9.063615 CAGTAAGTTAAACTTGGTTACCAATCT 57.936 33.333 17.85 4.81 43.07 2.40
5606 8249 8.294577 CCAGTAAGTTAAACTTGGTTACCAATC 58.705 37.037 17.85 4.74 43.07 2.67
5608 8251 6.546772 CCCAGTAAGTTAAACTTGGTTACCAA 59.453 38.462 16.59 16.59 41.69 3.67
5609 8252 6.063404 CCCAGTAAGTTAAACTTGGTTACCA 58.937 40.000 0.00 0.00 39.11 3.25
5610 8253 6.298361 TCCCAGTAAGTTAAACTTGGTTACC 58.702 40.000 0.00 0.00 39.11 2.85
5803 8446 9.899661 ACTAAATTTGTCCAGTTATACATGCTA 57.100 29.630 0.00 0.00 0.00 3.49
6120 8763 6.402226 GGAACATATTCTCCAAACGTTCAGAC 60.402 42.308 0.00 0.00 34.40 3.51
6121 8764 5.642063 GGAACATATTCTCCAAACGTTCAGA 59.358 40.000 0.00 0.49 34.40 3.27
6189 8832 5.466728 CCTTCAAGACGAGACATGAGAAAAA 59.533 40.000 0.00 0.00 0.00 1.94
6190 8833 4.991056 CCTTCAAGACGAGACATGAGAAAA 59.009 41.667 0.00 0.00 0.00 2.29
6191 8834 4.560128 CCTTCAAGACGAGACATGAGAAA 58.440 43.478 0.00 0.00 0.00 2.52
6192 8835 3.056536 CCCTTCAAGACGAGACATGAGAA 60.057 47.826 0.00 0.00 0.00 2.87
6193 8836 2.493675 CCCTTCAAGACGAGACATGAGA 59.506 50.000 0.00 0.00 0.00 3.27
6389 9032 4.100373 AGCTCCTCTAAGTCCTGAACATT 58.900 43.478 0.00 0.00 0.00 2.71
6390 9033 3.718723 AGCTCCTCTAAGTCCTGAACAT 58.281 45.455 0.00 0.00 0.00 2.71
7089 9735 6.158598 TGATTATAAACCGCCGGTAATACTC 58.841 40.000 10.30 14.23 33.12 2.59
7595 10243 5.463724 TGACCCAATTTTACGCAATTCAAAC 59.536 36.000 0.00 0.00 0.00 2.93
7636 10284 8.067784 CCATAATACTACAAATTACTTGCACGG 58.932 37.037 0.00 0.00 38.75 4.94
7705 10353 6.433404 ACTTTTTCATGTCTTGCAGATGAGAT 59.567 34.615 0.00 0.00 0.00 2.75
7707 10355 6.010294 ACTTTTTCATGTCTTGCAGATGAG 57.990 37.500 0.00 0.00 0.00 2.90
7713 10361 6.348458 CGGATTCTACTTTTTCATGTCTTGCA 60.348 38.462 0.00 0.00 0.00 4.08
7732 10380 6.183360 ACACAATCCAATGTCAATACGGATTC 60.183 38.462 0.00 0.00 43.06 2.52
7736 10384 4.963276 ACACAATCCAATGTCAATACGG 57.037 40.909 0.00 0.00 0.00 4.02
7745 10396 8.760103 TGAACAATGAATAACACAATCCAATG 57.240 30.769 0.00 0.00 0.00 2.82
7800 10452 9.121517 CGATGCAAGGATCAAATTTAATATCAC 57.878 33.333 0.00 0.00 0.00 3.06
7810 10549 7.066887 TGTTATACAACGATGCAAGGATCAAAT 59.933 33.333 0.00 0.00 37.48 2.32
7829 10568 5.648330 AGGGAAGGGAAGGAATGTTATAC 57.352 43.478 0.00 0.00 0.00 1.47
7841 10580 4.107636 GGGAGTAGATACTAGGGAAGGGAA 59.892 50.000 0.00 0.00 36.50 3.97
7842 10581 3.661654 GGGAGTAGATACTAGGGAAGGGA 59.338 52.174 0.00 0.00 36.50 4.20
7859 10598 7.182930 AGACAAATATTTAGGAACAGAGGGAGT 59.817 37.037 0.00 0.00 0.00 3.85
7860 10599 7.569240 AGACAAATATTTAGGAACAGAGGGAG 58.431 38.462 0.00 0.00 0.00 4.30
7861 10600 7.510675 AGACAAATATTTAGGAACAGAGGGA 57.489 36.000 0.00 0.00 0.00 4.20
7862 10601 8.581253 AAAGACAAATATTTAGGAACAGAGGG 57.419 34.615 0.00 0.00 0.00 4.30
7892 10631 9.706691 CCGTATGTGGTAGTCTATTTGAAATAT 57.293 33.333 0.00 0.00 0.00 1.28
7893 10632 8.916062 TCCGTATGTGGTAGTCTATTTGAAATA 58.084 33.333 0.00 0.00 0.00 1.40
7894 10633 7.788026 TCCGTATGTGGTAGTCTATTTGAAAT 58.212 34.615 0.00 0.00 0.00 2.17
7895 10634 7.172868 TCCGTATGTGGTAGTCTATTTGAAA 57.827 36.000 0.00 0.00 0.00 2.69
7896 10635 6.778834 TCCGTATGTGGTAGTCTATTTGAA 57.221 37.500 0.00 0.00 0.00 2.69
7897 10636 6.322969 ACATCCGTATGTGGTAGTCTATTTGA 59.677 38.462 0.00 0.00 44.79 2.69
7898 10637 6.513180 ACATCCGTATGTGGTAGTCTATTTG 58.487 40.000 0.00 0.00 44.79 2.32
7899 10638 6.726490 ACATCCGTATGTGGTAGTCTATTT 57.274 37.500 0.00 0.00 44.79 1.40
7900 10639 9.696572 ATATACATCCGTATGTGGTAGTCTATT 57.303 33.333 3.56 0.00 45.99 1.73
7902 10641 9.828039 CTATATACATCCGTATGTGGTAGTCTA 57.172 37.037 3.56 0.00 45.99 2.59
7903 10642 8.546322 TCTATATACATCCGTATGTGGTAGTCT 58.454 37.037 3.56 0.00 45.99 3.24
7904 10643 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
7905 10644 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
7906 10645 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
7908 10647 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
7941 10680 6.021596 CGGTGCAAAATAAGTGAATCTACAC 58.978 40.000 0.00 0.00 40.60 2.90
7942 10681 5.703592 ACGGTGCAAAATAAGTGAATCTACA 59.296 36.000 0.00 0.00 0.00 2.74
7943 10682 6.178239 ACGGTGCAAAATAAGTGAATCTAC 57.822 37.500 0.00 0.00 0.00 2.59
7944 10683 7.551262 ACATACGGTGCAAAATAAGTGAATCTA 59.449 33.333 0.00 0.00 0.00 1.98
7945 10684 6.374333 ACATACGGTGCAAAATAAGTGAATCT 59.626 34.615 0.00 0.00 0.00 2.40
7946 10685 6.551736 ACATACGGTGCAAAATAAGTGAATC 58.448 36.000 0.00 0.00 0.00 2.52
7947 10686 6.509418 ACATACGGTGCAAAATAAGTGAAT 57.491 33.333 0.00 0.00 0.00 2.57
7948 10687 5.950758 ACATACGGTGCAAAATAAGTGAA 57.049 34.783 0.00 0.00 0.00 3.18
7949 10688 6.167685 ACTACATACGGTGCAAAATAAGTGA 58.832 36.000 0.00 0.00 0.00 3.41
7950 10689 6.091577 TGACTACATACGGTGCAAAATAAGTG 59.908 38.462 0.00 0.00 0.00 3.16
7951 10690 6.091713 GTGACTACATACGGTGCAAAATAAGT 59.908 38.462 0.00 0.00 0.00 2.24
7952 10691 6.312918 AGTGACTACATACGGTGCAAAATAAG 59.687 38.462 0.00 0.00 0.00 1.73
7953 10692 6.091577 CAGTGACTACATACGGTGCAAAATAA 59.908 38.462 0.00 0.00 0.00 1.40
7954 10693 5.579119 CAGTGACTACATACGGTGCAAAATA 59.421 40.000 0.00 0.00 0.00 1.40
7955 10694 4.391830 CAGTGACTACATACGGTGCAAAAT 59.608 41.667 0.00 0.00 0.00 1.82
7956 10695 3.743911 CAGTGACTACATACGGTGCAAAA 59.256 43.478 0.00 0.00 0.00 2.44
7957 10696 3.243941 ACAGTGACTACATACGGTGCAAA 60.244 43.478 0.00 0.00 0.00 3.68
7958 10697 2.297880 ACAGTGACTACATACGGTGCAA 59.702 45.455 0.00 0.00 0.00 4.08
7959 10698 1.890489 ACAGTGACTACATACGGTGCA 59.110 47.619 0.00 0.00 0.00 4.57
7960 10699 2.649331 ACAGTGACTACATACGGTGC 57.351 50.000 0.00 0.00 0.00 5.01
7961 10700 4.168922 TCAACAGTGACTACATACGGTG 57.831 45.455 0.00 0.00 0.00 4.94
7962 10701 4.859304 TTCAACAGTGACTACATACGGT 57.141 40.909 0.00 0.00 31.90 4.83
7963 10702 6.100004 AGATTTCAACAGTGACTACATACGG 58.900 40.000 0.00 0.00 31.90 4.02
7964 10703 7.582435 AAGATTTCAACAGTGACTACATACG 57.418 36.000 0.00 0.00 31.90 3.06
7965 10704 9.856488 TCTAAGATTTCAACAGTGACTACATAC 57.144 33.333 0.00 0.00 31.90 2.39
7967 10706 9.778741 TTTCTAAGATTTCAACAGTGACTACAT 57.221 29.630 0.00 0.00 31.90 2.29
7968 10707 9.261180 CTTTCTAAGATTTCAACAGTGACTACA 57.739 33.333 0.00 0.00 31.90 2.74
7969 10708 9.477484 TCTTTCTAAGATTTCAACAGTGACTAC 57.523 33.333 0.00 0.00 29.83 2.73
7970 10709 9.477484 GTCTTTCTAAGATTTCAACAGTGACTA 57.523 33.333 0.00 0.00 40.18 2.59
7971 10710 7.987458 TGTCTTTCTAAGATTTCAACAGTGACT 59.013 33.333 0.00 0.00 40.18 3.41
7972 10711 8.142994 TGTCTTTCTAAGATTTCAACAGTGAC 57.857 34.615 0.00 0.00 40.18 3.67
7973 10712 8.731275 TTGTCTTTCTAAGATTTCAACAGTGA 57.269 30.769 0.00 0.00 40.18 3.41
7974 10713 9.956720 ATTTGTCTTTCTAAGATTTCAACAGTG 57.043 29.630 0.00 0.00 40.18 3.66
7989 10728 9.413734 CCTCCATTCCTAAATATTTGTCTTTCT 57.586 33.333 11.05 0.00 0.00 2.52
7990 10729 8.633561 CCCTCCATTCCTAAATATTTGTCTTTC 58.366 37.037 11.05 0.00 0.00 2.62
7991 10730 8.343787 TCCCTCCATTCCTAAATATTTGTCTTT 58.656 33.333 11.05 0.00 0.00 2.52
7992 10731 7.882755 TCCCTCCATTCCTAAATATTTGTCTT 58.117 34.615 11.05 0.00 0.00 3.01
7993 10732 7.129504 ACTCCCTCCATTCCTAAATATTTGTCT 59.870 37.037 11.05 0.00 0.00 3.41
7994 10733 7.290813 ACTCCCTCCATTCCTAAATATTTGTC 58.709 38.462 11.05 0.00 0.00 3.18
7995 10734 7.226059 ACTCCCTCCATTCCTAAATATTTGT 57.774 36.000 11.05 0.00 0.00 2.83
7996 10735 8.217799 TGTACTCCCTCCATTCCTAAATATTTG 58.782 37.037 11.05 1.40 0.00 2.32
7997 10736 8.344939 TGTACTCCCTCCATTCCTAAATATTT 57.655 34.615 5.89 5.89 0.00 1.40
7998 10737 7.794683 TCTGTACTCCCTCCATTCCTAAATATT 59.205 37.037 0.00 0.00 0.00 1.28
7999 10738 7.313731 TCTGTACTCCCTCCATTCCTAAATAT 58.686 38.462 0.00 0.00 0.00 1.28
8000 10739 6.689561 TCTGTACTCCCTCCATTCCTAAATA 58.310 40.000 0.00 0.00 0.00 1.40
8001 10740 5.538877 TCTGTACTCCCTCCATTCCTAAAT 58.461 41.667 0.00 0.00 0.00 1.40
8002 10741 4.955335 TCTGTACTCCCTCCATTCCTAAA 58.045 43.478 0.00 0.00 0.00 1.85
8003 10742 4.620086 TCTGTACTCCCTCCATTCCTAA 57.380 45.455 0.00 0.00 0.00 2.69
8004 10743 4.834406 ATCTGTACTCCCTCCATTCCTA 57.166 45.455 0.00 0.00 0.00 2.94
8005 10744 3.715648 ATCTGTACTCCCTCCATTCCT 57.284 47.619 0.00 0.00 0.00 3.36
8006 10745 5.308237 ACATAATCTGTACTCCCTCCATTCC 59.692 44.000 0.00 0.00 35.91 3.01
8007 10746 6.042093 TCACATAATCTGTACTCCCTCCATTC 59.958 42.308 0.00 0.00 35.91 2.67
8008 10747 5.905331 TCACATAATCTGTACTCCCTCCATT 59.095 40.000 0.00 0.00 35.91 3.16
8009 10748 5.467738 TCACATAATCTGTACTCCCTCCAT 58.532 41.667 0.00 0.00 35.91 3.41
8010 10749 4.878968 TCACATAATCTGTACTCCCTCCA 58.121 43.478 0.00 0.00 35.91 3.86
8011 10750 4.896482 ACTCACATAATCTGTACTCCCTCC 59.104 45.833 0.00 0.00 35.91 4.30
8012 10751 6.472686 AACTCACATAATCTGTACTCCCTC 57.527 41.667 0.00 0.00 35.91 4.30
8013 10752 6.875972 AAACTCACATAATCTGTACTCCCT 57.124 37.500 0.00 0.00 35.91 4.20
8014 10753 7.824779 AGAAAAACTCACATAATCTGTACTCCC 59.175 37.037 0.00 0.00 35.91 4.30
8015 10754 8.779354 AGAAAAACTCACATAATCTGTACTCC 57.221 34.615 0.00 0.00 35.91 3.85
8017 10756 9.003658 CCAAGAAAAACTCACATAATCTGTACT 57.996 33.333 0.00 0.00 35.91 2.73
8018 10757 8.999431 TCCAAGAAAAACTCACATAATCTGTAC 58.001 33.333 0.00 0.00 35.91 2.90
8019 10758 9.567776 TTCCAAGAAAAACTCACATAATCTGTA 57.432 29.630 0.00 0.00 35.91 2.74
8029 10768 8.755018 CATGTAAATGTTCCAAGAAAAACTCAC 58.245 33.333 0.00 0.00 0.00 3.51
8156 10896 2.406130 AGCCAATTGTCATGTTTTGCG 58.594 42.857 4.43 0.00 0.00 4.85
8181 10921 9.979270 CTTAATATGCGCAAGGAATTAAGATAG 57.021 33.333 30.12 17.40 43.09 2.08
8232 10973 3.944015 ACAATACTCAATCAGCAAGGAGC 59.056 43.478 0.00 0.00 46.19 4.70
8233 10974 5.065731 GGAACAATACTCAATCAGCAAGGAG 59.934 44.000 0.00 0.00 0.00 3.69
8339 11080 1.566404 CAAAAACCCGGTCACTTTGC 58.434 50.000 0.00 0.00 0.00 3.68
8352 11093 2.734276 TGCCTAAATCCGCCAAAAAC 57.266 45.000 0.00 0.00 0.00 2.43
8368 11109 1.736612 CTCCTGAGAGCTTCTTTGCC 58.263 55.000 0.00 0.00 32.13 4.52
8386 11127 2.746359 GTGGCAGTCTCACCAGCT 59.254 61.111 0.00 0.00 36.38 4.24
8398 11139 1.227527 CTTGGTCTGACACGTGGCA 60.228 57.895 25.31 25.31 0.00 4.92
8404 11145 0.618458 TATGGCCCTTGGTCTGACAC 59.382 55.000 10.38 0.00 0.00 3.67
8434 11175 4.472470 ACTACCCTAATGTCCCTAAACACC 59.528 45.833 0.00 0.00 30.55 4.16
8613 11824 1.463444 GTCAAAACTCCGATGAACCCG 59.537 52.381 0.00 0.00 0.00 5.28
8647 11858 0.246086 AGAGCTTCTCTCAACGCAGG 59.754 55.000 0.00 0.00 44.35 4.85
8671 11882 3.476552 ACCTTCACGCATCAGAAGAAAA 58.523 40.909 0.00 0.00 42.95 2.29
8712 11923 3.195396 AGAAAACAGCCACAGAAAAAGCA 59.805 39.130 0.00 0.00 0.00 3.91
8713 11924 3.553105 CAGAAAACAGCCACAGAAAAAGC 59.447 43.478 0.00 0.00 0.00 3.51
8714 11925 4.747810 ACAGAAAACAGCCACAGAAAAAG 58.252 39.130 0.00 0.00 0.00 2.27
8850 12068 1.131126 CCACAGCACGAATCAACATCC 59.869 52.381 0.00 0.00 0.00 3.51
8864 12082 2.743928 CACCTCTTCCGCCACAGC 60.744 66.667 0.00 0.00 0.00 4.40
8872 12090 2.019984 GACATTGATGCCACCTCTTCC 58.980 52.381 0.00 0.00 0.00 3.46
8891 12109 7.671819 CAGTTGGGAGAGTATAGATATCAAGGA 59.328 40.741 5.32 0.00 0.00 3.36
8955 12173 5.960113 ACACACAAGATTACTAGAGCTGAG 58.040 41.667 0.00 0.00 0.00 3.35
8964 12182 5.552870 ACAAGAGGACACACAAGATTACT 57.447 39.130 0.00 0.00 0.00 2.24
8965 12183 5.049405 CCAACAAGAGGACACACAAGATTAC 60.049 44.000 0.00 0.00 0.00 1.89
8968 12241 3.117888 ACCAACAAGAGGACACACAAGAT 60.118 43.478 0.00 0.00 0.00 2.40
8981 12254 2.281484 GCGGCCTGACCAACAAGA 60.281 61.111 0.00 0.00 39.03 3.02
8982 12255 1.898574 AAGCGGCCTGACCAACAAG 60.899 57.895 0.00 0.00 39.03 3.16
8983 12256 2.192861 CAAGCGGCCTGACCAACAA 61.193 57.895 0.00 0.00 39.03 2.83
9021 12294 3.652274 CCGGCAAAAAGTTCATGTCAAT 58.348 40.909 0.00 0.00 0.00 2.57
9028 12301 1.539929 CCATTGCCGGCAAAAAGTTCA 60.540 47.619 42.74 21.01 39.55 3.18
9033 12306 1.197430 ATCCCCATTGCCGGCAAAAA 61.197 50.000 42.74 24.31 39.55 1.94
9145 12423 1.051812 CCCTCTCCGTCATTGGCTAT 58.948 55.000 0.00 0.00 0.00 2.97
9197 12476 1.542547 GGAAAGAACCTTCCACGAGCA 60.543 52.381 0.00 0.00 43.84 4.26
9198 12477 1.157585 GGAAAGAACCTTCCACGAGC 58.842 55.000 0.00 0.00 43.84 5.03
9225 12504 6.016527 CGCTTTGTGGATCCTACTATGTAGTA 60.017 42.308 14.23 0.42 37.73 1.82
9226 12505 5.221263 CGCTTTGTGGATCCTACTATGTAGT 60.221 44.000 14.23 0.00 40.24 2.73
9227 12506 5.009710 TCGCTTTGTGGATCCTACTATGTAG 59.990 44.000 14.23 3.20 0.00 2.74
9228 12507 4.891168 TCGCTTTGTGGATCCTACTATGTA 59.109 41.667 14.23 0.00 0.00 2.29
9229 12508 3.704566 TCGCTTTGTGGATCCTACTATGT 59.295 43.478 14.23 0.00 0.00 2.29
9230 12509 4.202161 ACTCGCTTTGTGGATCCTACTATG 60.202 45.833 14.23 9.54 0.00 2.23
9231 12510 3.961408 ACTCGCTTTGTGGATCCTACTAT 59.039 43.478 14.23 0.00 0.00 2.12
9232 12511 3.362706 ACTCGCTTTGTGGATCCTACTA 58.637 45.455 14.23 3.98 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.