Multiple sequence alignment - TraesCS5D01G267300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G267300 | chr5D | 100.000 | 3521 | 0 | 0 | 1 | 3521 | 370959866 | 370956346 | 0.000000e+00 | 6503.0 |
1 | TraesCS5D01G267300 | chr5D | 100.000 | 2603 | 0 | 0 | 3826 | 6428 | 370956041 | 370953439 | 0.000000e+00 | 4807.0 |
2 | TraesCS5D01G267300 | chr5D | 92.731 | 908 | 48 | 11 | 5528 | 6420 | 14531852 | 14530948 | 0.000000e+00 | 1295.0 |
3 | TraesCS5D01G267300 | chr5D | 92.337 | 783 | 41 | 11 | 5652 | 6423 | 499061979 | 499061205 | 0.000000e+00 | 1096.0 |
4 | TraesCS5D01G267300 | chr5D | 94.535 | 677 | 16 | 5 | 1258 | 1924 | 371070319 | 371069654 | 0.000000e+00 | 1026.0 |
5 | TraesCS5D01G267300 | chr5D | 88.578 | 858 | 52 | 21 | 438 | 1260 | 371071324 | 371070478 | 0.000000e+00 | 1000.0 |
6 | TraesCS5D01G267300 | chr5D | 91.712 | 736 | 32 | 13 | 5526 | 6246 | 524593988 | 524593267 | 0.000000e+00 | 994.0 |
7 | TraesCS5D01G267300 | chr5D | 84.546 | 893 | 82 | 28 | 113 | 965 | 371057174 | 371056298 | 0.000000e+00 | 833.0 |
8 | TraesCS5D01G267300 | chr5D | 97.750 | 400 | 7 | 1 | 1916 | 2315 | 371068377 | 371067980 | 0.000000e+00 | 688.0 |
9 | TraesCS5D01G267300 | chr5D | 88.446 | 251 | 17 | 7 | 1018 | 1265 | 371056023 | 371055782 | 6.300000e-75 | 292.0 |
10 | TraesCS5D01G267300 | chr5D | 83.529 | 255 | 20 | 12 | 128 | 366 | 371077696 | 371077448 | 1.090000e-52 | 219.0 |
11 | TraesCS5D01G267300 | chr5D | 86.275 | 153 | 12 | 4 | 119 | 268 | 371058582 | 371058436 | 2.400000e-34 | 158.0 |
12 | TraesCS5D01G267300 | chr5D | 84.177 | 158 | 16 | 5 | 113 | 266 | 371060505 | 371060353 | 1.870000e-30 | 145.0 |
13 | TraesCS5D01G267300 | chr5D | 98.667 | 75 | 1 | 0 | 3447 | 3521 | 288133278 | 288133352 | 4.040000e-27 | 134.0 |
14 | TraesCS5D01G267300 | chr5D | 96.250 | 80 | 3 | 0 | 3442 | 3521 | 377314962 | 377315041 | 1.450000e-26 | 132.0 |
15 | TraesCS5D01G267300 | chr5D | 98.305 | 59 | 1 | 0 | 3826 | 3884 | 288133409 | 288133467 | 3.170000e-18 | 104.0 |
16 | TraesCS5D01G267300 | chr5D | 98.305 | 59 | 1 | 0 | 3826 | 3884 | 555039203 | 555039261 | 3.170000e-18 | 104.0 |
17 | TraesCS5D01G267300 | chr5A | 94.245 | 1529 | 60 | 16 | 4020 | 5525 | 473644753 | 473643230 | 0.000000e+00 | 2311.0 |
18 | TraesCS5D01G267300 | chr5A | 91.254 | 949 | 50 | 19 | 346 | 1275 | 473646837 | 473645903 | 0.000000e+00 | 1262.0 |
19 | TraesCS5D01G267300 | chr5A | 83.536 | 905 | 86 | 33 | 1907 | 2797 | 473645598 | 473644743 | 0.000000e+00 | 787.0 |
20 | TraesCS5D01G267300 | chr5A | 94.771 | 153 | 8 | 0 | 1290 | 1442 | 473645920 | 473645768 | 8.330000e-59 | 239.0 |
21 | TraesCS5D01G267300 | chr5A | 88.770 | 187 | 11 | 5 | 113 | 291 | 473647025 | 473646841 | 3.020000e-53 | 220.0 |
22 | TraesCS5D01G267300 | chr5A | 87.097 | 155 | 11 | 4 | 117 | 268 | 473648411 | 473648263 | 3.990000e-37 | 167.0 |
23 | TraesCS5D01G267300 | chr5B | 93.399 | 1515 | 78 | 13 | 4021 | 5517 | 440288997 | 440287487 | 0.000000e+00 | 2224.0 |
24 | TraesCS5D01G267300 | chr5B | 86.070 | 804 | 49 | 33 | 118 | 901 | 440293252 | 440292492 | 0.000000e+00 | 806.0 |
25 | TraesCS5D01G267300 | chr5B | 94.208 | 259 | 13 | 2 | 1018 | 1275 | 440292377 | 440292120 | 1.680000e-105 | 394.0 |
26 | TraesCS5D01G267300 | chr5B | 90.446 | 157 | 9 | 2 | 2568 | 2724 | 440289498 | 440289348 | 1.090000e-47 | 202.0 |
27 | TraesCS5D01G267300 | chr5B | 84.416 | 154 | 18 | 2 | 118 | 268 | 440294084 | 440293934 | 5.190000e-31 | 147.0 |
28 | TraesCS5D01G267300 | chr5B | 88.983 | 118 | 9 | 2 | 1 | 114 | 241164938 | 241165055 | 6.720000e-30 | 143.0 |
29 | TraesCS5D01G267300 | chr5B | 92.222 | 90 | 6 | 1 | 1826 | 1914 | 472754767 | 472754678 | 6.770000e-25 | 126.0 |
30 | TraesCS5D01G267300 | chr5B | 98.214 | 56 | 1 | 0 | 2720 | 2775 | 440289076 | 440289021 | 1.470000e-16 | 99.0 |
31 | TraesCS5D01G267300 | chr5B | 86.207 | 58 | 4 | 4 | 1772 | 1826 | 615370989 | 615370933 | 6.960000e-05 | 60.2 |
32 | TraesCS5D01G267300 | chr4D | 94.072 | 911 | 45 | 5 | 5525 | 6428 | 53420492 | 53419584 | 0.000000e+00 | 1375.0 |
33 | TraesCS5D01G267300 | chr4D | 90.899 | 934 | 63 | 12 | 5508 | 6424 | 224754025 | 224753097 | 0.000000e+00 | 1234.0 |
34 | TraesCS5D01G267300 | chr3D | 92.212 | 886 | 41 | 15 | 5525 | 6392 | 91821088 | 91821963 | 0.000000e+00 | 1229.0 |
35 | TraesCS5D01G267300 | chr3D | 91.753 | 97 | 5 | 3 | 1826 | 1920 | 128214083 | 128214178 | 1.450000e-26 | 132.0 |
36 | TraesCS5D01G267300 | chr3D | 85.437 | 103 | 15 | 0 | 2354 | 2456 | 447584265 | 447584163 | 2.450000e-19 | 108.0 |
37 | TraesCS5D01G267300 | chr7D | 91.328 | 911 | 48 | 11 | 5523 | 6424 | 422153968 | 422153080 | 0.000000e+00 | 1216.0 |
38 | TraesCS5D01G267300 | chr7D | 91.170 | 487 | 26 | 3 | 2904 | 3373 | 599196462 | 599195976 | 0.000000e+00 | 645.0 |
39 | TraesCS5D01G267300 | chr7D | 91.111 | 135 | 12 | 0 | 3887 | 4021 | 599195962 | 599195828 | 3.960000e-42 | 183.0 |
40 | TraesCS5D01G267300 | chr7D | 91.525 | 118 | 8 | 2 | 1598 | 1713 | 194481985 | 194482102 | 1.850000e-35 | 161.0 |
41 | TraesCS5D01G267300 | chr7D | 94.444 | 72 | 3 | 1 | 3376 | 3446 | 599196026 | 599195955 | 6.810000e-20 | 110.0 |
42 | TraesCS5D01G267300 | chr4A | 90.791 | 923 | 58 | 14 | 5523 | 6428 | 589784735 | 589783823 | 0.000000e+00 | 1208.0 |
43 | TraesCS5D01G267300 | chr4A | 90.924 | 595 | 35 | 7 | 2798 | 3373 | 682992472 | 682993066 | 0.000000e+00 | 782.0 |
44 | TraesCS5D01G267300 | chr4A | 89.431 | 123 | 8 | 4 | 1600 | 1717 | 741984402 | 741984280 | 4.010000e-32 | 150.0 |
45 | TraesCS5D01G267300 | chr4A | 91.304 | 92 | 6 | 2 | 1828 | 1918 | 577380091 | 577380181 | 2.430000e-24 | 124.0 |
46 | TraesCS5D01G267300 | chr4A | 93.333 | 45 | 0 | 3 | 1783 | 1826 | 712603269 | 712603227 | 5.380000e-06 | 63.9 |
47 | TraesCS5D01G267300 | chr2A | 90.228 | 921 | 69 | 16 | 5527 | 6428 | 22736393 | 22737311 | 0.000000e+00 | 1182.0 |
48 | TraesCS5D01G267300 | chr2A | 85.948 | 918 | 102 | 14 | 5527 | 6428 | 121949192 | 121950098 | 0.000000e+00 | 955.0 |
49 | TraesCS5D01G267300 | chr2A | 81.218 | 591 | 76 | 22 | 2860 | 3445 | 640273957 | 640273397 | 1.640000e-120 | 444.0 |
50 | TraesCS5D01G267300 | chr2A | 88.722 | 133 | 12 | 3 | 1591 | 1720 | 218122366 | 218122234 | 6.670000e-35 | 159.0 |
51 | TraesCS5D01G267300 | chr2A | 95.000 | 100 | 5 | 0 | 1 | 100 | 513095814 | 513095715 | 2.400000e-34 | 158.0 |
52 | TraesCS5D01G267300 | chr2A | 93.023 | 86 | 5 | 1 | 1826 | 1910 | 135473304 | 135473389 | 2.430000e-24 | 124.0 |
53 | TraesCS5D01G267300 | chr2A | 86.408 | 103 | 14 | 0 | 2354 | 2456 | 537249576 | 537249474 | 5.270000e-21 | 113.0 |
54 | TraesCS5D01G267300 | chr2A | 95.556 | 45 | 2 | 0 | 3329 | 3373 | 640273461 | 640273417 | 8.940000e-09 | 73.1 |
55 | TraesCS5D01G267300 | chr2A | 88.679 | 53 | 2 | 4 | 1775 | 1826 | 11828489 | 11828440 | 1.940000e-05 | 62.1 |
56 | TraesCS5D01G267300 | chr6A | 90.909 | 594 | 34 | 7 | 2798 | 3373 | 553765337 | 553764746 | 0.000000e+00 | 780.0 |
57 | TraesCS5D01G267300 | chr6A | 90.756 | 119 | 11 | 0 | 1592 | 1710 | 3698718 | 3698836 | 6.670000e-35 | 159.0 |
58 | TraesCS5D01G267300 | chr6A | 96.203 | 79 | 3 | 0 | 3443 | 3521 | 593697114 | 593697036 | 5.230000e-26 | 130.0 |
59 | TraesCS5D01G267300 | chr6A | 88.298 | 94 | 9 | 1 | 2356 | 2447 | 99403061 | 99403154 | 1.890000e-20 | 111.0 |
60 | TraesCS5D01G267300 | chr6A | 98.305 | 59 | 1 | 0 | 3826 | 3884 | 554780695 | 554780637 | 3.170000e-18 | 104.0 |
61 | TraesCS5D01G267300 | chr6A | 91.429 | 70 | 5 | 1 | 3378 | 3446 | 553764794 | 553764725 | 1.910000e-15 | 95.3 |
62 | TraesCS5D01G267300 | chr1A | 90.323 | 589 | 37 | 7 | 2797 | 3370 | 441837175 | 441837758 | 0.000000e+00 | 754.0 |
63 | TraesCS5D01G267300 | chr1A | 96.000 | 100 | 4 | 0 | 1 | 100 | 309267771 | 309267672 | 5.160000e-36 | 163.0 |
64 | TraesCS5D01G267300 | chr1A | 86.408 | 103 | 14 | 0 | 2354 | 2456 | 555641228 | 555641126 | 5.270000e-21 | 113.0 |
65 | TraesCS5D01G267300 | chr1A | 87.273 | 55 | 4 | 3 | 1773 | 1826 | 351605435 | 351605487 | 6.960000e-05 | 60.2 |
66 | TraesCS5D01G267300 | chr3A | 90.017 | 591 | 38 | 7 | 2798 | 3373 | 437990607 | 437990023 | 0.000000e+00 | 745.0 |
67 | TraesCS5D01G267300 | chr3A | 87.429 | 525 | 37 | 11 | 2798 | 3319 | 572542460 | 572542958 | 1.550000e-160 | 577.0 |
68 | TraesCS5D01G267300 | chr3A | 91.597 | 119 | 6 | 3 | 1 | 115 | 204126072 | 204126190 | 1.850000e-35 | 161.0 |
69 | TraesCS5D01G267300 | chr3A | 93.023 | 86 | 5 | 1 | 1826 | 1910 | 21364533 | 21364618 | 2.430000e-24 | 124.0 |
70 | TraesCS5D01G267300 | chr3A | 88.000 | 100 | 12 | 0 | 2357 | 2456 | 533074798 | 533074699 | 1.130000e-22 | 119.0 |
71 | TraesCS5D01G267300 | chr3A | 92.683 | 82 | 5 | 1 | 2795 | 2875 | 545289941 | 545289860 | 4.070000e-22 | 117.0 |
72 | TraesCS5D01G267300 | chr3A | 88.298 | 94 | 11 | 0 | 2354 | 2447 | 575492107 | 575492200 | 5.270000e-21 | 113.0 |
73 | TraesCS5D01G267300 | chr3A | 94.286 | 70 | 3 | 1 | 3378 | 3446 | 572548747 | 572548816 | 8.810000e-19 | 106.0 |
74 | TraesCS5D01G267300 | chr3A | 93.651 | 63 | 4 | 0 | 3373 | 3435 | 437990076 | 437990014 | 1.910000e-15 | 95.3 |
75 | TraesCS5D01G267300 | chr1D | 82.569 | 654 | 73 | 26 | 2798 | 3445 | 474732842 | 474732224 | 7.330000e-149 | 538.0 |
76 | TraesCS5D01G267300 | chr1D | 94.059 | 101 | 5 | 1 | 1 | 101 | 399809004 | 399808905 | 1.120000e-32 | 152.0 |
77 | TraesCS5D01G267300 | chr1D | 97.436 | 78 | 2 | 0 | 3444 | 3521 | 191376211 | 191376134 | 4.040000e-27 | 134.0 |
78 | TraesCS5D01G267300 | chr1D | 91.954 | 87 | 5 | 2 | 1826 | 1910 | 11011715 | 11011629 | 3.150000e-23 | 121.0 |
79 | TraesCS5D01G267300 | chr1D | 91.892 | 74 | 4 | 2 | 3826 | 3898 | 191375509 | 191375437 | 1.140000e-17 | 102.0 |
80 | TraesCS5D01G267300 | chr1D | 100.000 | 47 | 0 | 0 | 3327 | 3373 | 474732290 | 474732244 | 3.190000e-13 | 87.9 |
81 | TraesCS5D01G267300 | chr1D | 85.965 | 57 | 5 | 3 | 1771 | 1826 | 192584792 | 192584738 | 2.500000e-04 | 58.4 |
82 | TraesCS5D01G267300 | chr4B | 94.737 | 114 | 5 | 1 | 1598 | 1710 | 562352594 | 562352481 | 6.620000e-40 | 176.0 |
83 | TraesCS5D01G267300 | chr4B | 97.468 | 79 | 1 | 1 | 3443 | 3521 | 437405213 | 437405136 | 4.040000e-27 | 134.0 |
84 | TraesCS5D01G267300 | chr4B | 98.361 | 61 | 1 | 0 | 3826 | 3886 | 649629720 | 649629660 | 2.450000e-19 | 108.0 |
85 | TraesCS5D01G267300 | chr4B | 98.333 | 60 | 1 | 0 | 3826 | 3885 | 437405077 | 437405018 | 8.810000e-19 | 106.0 |
86 | TraesCS5D01G267300 | chr7A | 90.551 | 127 | 10 | 2 | 1591 | 1716 | 115736376 | 115736251 | 3.990000e-37 | 167.0 |
87 | TraesCS5D01G267300 | chr7A | 95.000 | 100 | 5 | 0 | 1 | 100 | 171538535 | 171538634 | 2.400000e-34 | 158.0 |
88 | TraesCS5D01G267300 | chr7A | 90.678 | 118 | 11 | 0 | 1599 | 1716 | 175244573 | 175244690 | 2.400000e-34 | 158.0 |
89 | TraesCS5D01G267300 | chr7A | 95.062 | 81 | 4 | 0 | 3439 | 3519 | 6840401 | 6840481 | 1.880000e-25 | 128.0 |
90 | TraesCS5D01G267300 | chrUn | 90.756 | 119 | 11 | 0 | 1592 | 1710 | 231619512 | 231619630 | 6.670000e-35 | 159.0 |
91 | TraesCS5D01G267300 | chrUn | 95.000 | 100 | 5 | 0 | 1 | 100 | 262502944 | 262502845 | 2.400000e-34 | 158.0 |
92 | TraesCS5D01G267300 | chrUn | 95.000 | 100 | 5 | 0 | 1 | 100 | 322126333 | 322126234 | 2.400000e-34 | 158.0 |
93 | TraesCS5D01G267300 | chrUn | 93.258 | 89 | 5 | 1 | 1826 | 1913 | 93728740 | 93728652 | 5.230000e-26 | 130.0 |
94 | TraesCS5D01G267300 | chr2B | 95.833 | 96 | 4 | 0 | 1 | 96 | 651716334 | 651716239 | 8.630000e-34 | 156.0 |
95 | TraesCS5D01G267300 | chr2B | 88.298 | 94 | 11 | 0 | 2354 | 2447 | 399941863 | 399941956 | 5.270000e-21 | 113.0 |
96 | TraesCS5D01G267300 | chr2B | 98.333 | 60 | 1 | 0 | 3826 | 3885 | 61472077 | 61472136 | 8.810000e-19 | 106.0 |
97 | TraesCS5D01G267300 | chr2D | 98.684 | 76 | 1 | 0 | 3446 | 3521 | 91365543 | 91365618 | 1.120000e-27 | 135.0 |
98 | TraesCS5D01G267300 | chr2D | 87.379 | 103 | 13 | 0 | 2354 | 2456 | 399968883 | 399968781 | 1.130000e-22 | 119.0 |
99 | TraesCS5D01G267300 | chr2D | 88.298 | 94 | 11 | 0 | 2354 | 2447 | 331763018 | 331763111 | 5.270000e-21 | 113.0 |
100 | TraesCS5D01G267300 | chr7B | 97.403 | 77 | 2 | 0 | 3445 | 3521 | 533378678 | 533378754 | 1.450000e-26 | 132.0 |
101 | TraesCS5D01G267300 | chr7B | 98.361 | 61 | 1 | 0 | 3826 | 3886 | 600005700 | 600005640 | 2.450000e-19 | 108.0 |
102 | TraesCS5D01G267300 | chr6B | 93.103 | 87 | 4 | 2 | 3436 | 3521 | 652619829 | 652619914 | 6.770000e-25 | 126.0 |
103 | TraesCS5D01G267300 | chr6B | 88.235 | 51 | 2 | 4 | 1778 | 1826 | 646750156 | 646750108 | 2.500000e-04 | 58.4 |
104 | TraesCS5D01G267300 | chr6B | 88.235 | 51 | 2 | 4 | 1778 | 1826 | 646750266 | 646750218 | 2.500000e-04 | 58.4 |
105 | TraesCS5D01G267300 | chr6D | 91.954 | 87 | 6 | 1 | 1826 | 1911 | 9861733 | 9861819 | 3.150000e-23 | 121.0 |
106 | TraesCS5D01G267300 | chr6D | 91.781 | 73 | 5 | 1 | 3826 | 3897 | 453003918 | 453003846 | 4.100000e-17 | 100.0 |
107 | TraesCS5D01G267300 | chr3B | 93.182 | 44 | 1 | 2 | 1784 | 1826 | 246157447 | 246157489 | 5.380000e-06 | 63.9 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G267300 | chr5D | 370953439 | 370959866 | 6427 | True | 5655.000000 | 6503 | 100.000000 | 1 | 6428 | 2 | chr5D.!!$R5 | 6427 |
1 | TraesCS5D01G267300 | chr5D | 14530948 | 14531852 | 904 | True | 1295.000000 | 1295 | 92.731000 | 5528 | 6420 | 1 | chr5D.!!$R1 | 892 |
2 | TraesCS5D01G267300 | chr5D | 499061205 | 499061979 | 774 | True | 1096.000000 | 1096 | 92.337000 | 5652 | 6423 | 1 | chr5D.!!$R3 | 771 |
3 | TraesCS5D01G267300 | chr5D | 524593267 | 524593988 | 721 | True | 994.000000 | 994 | 91.712000 | 5526 | 6246 | 1 | chr5D.!!$R4 | 720 |
4 | TraesCS5D01G267300 | chr5D | 371067980 | 371071324 | 3344 | True | 904.666667 | 1026 | 93.621000 | 438 | 2315 | 3 | chr5D.!!$R7 | 1877 |
5 | TraesCS5D01G267300 | chr5D | 371055782 | 371060505 | 4723 | True | 357.000000 | 833 | 85.861000 | 113 | 1265 | 4 | chr5D.!!$R6 | 1152 |
6 | TraesCS5D01G267300 | chr5A | 473643230 | 473648411 | 5181 | True | 831.000000 | 2311 | 89.945500 | 113 | 5525 | 6 | chr5A.!!$R1 | 5412 |
7 | TraesCS5D01G267300 | chr5B | 440287487 | 440294084 | 6597 | True | 645.333333 | 2224 | 91.125500 | 118 | 5517 | 6 | chr5B.!!$R3 | 5399 |
8 | TraesCS5D01G267300 | chr4D | 53419584 | 53420492 | 908 | True | 1375.000000 | 1375 | 94.072000 | 5525 | 6428 | 1 | chr4D.!!$R1 | 903 |
9 | TraesCS5D01G267300 | chr4D | 224753097 | 224754025 | 928 | True | 1234.000000 | 1234 | 90.899000 | 5508 | 6424 | 1 | chr4D.!!$R2 | 916 |
10 | TraesCS5D01G267300 | chr3D | 91821088 | 91821963 | 875 | False | 1229.000000 | 1229 | 92.212000 | 5525 | 6392 | 1 | chr3D.!!$F1 | 867 |
11 | TraesCS5D01G267300 | chr7D | 422153080 | 422153968 | 888 | True | 1216.000000 | 1216 | 91.328000 | 5523 | 6424 | 1 | chr7D.!!$R1 | 901 |
12 | TraesCS5D01G267300 | chr7D | 599195828 | 599196462 | 634 | True | 312.666667 | 645 | 92.241667 | 2904 | 4021 | 3 | chr7D.!!$R2 | 1117 |
13 | TraesCS5D01G267300 | chr4A | 589783823 | 589784735 | 912 | True | 1208.000000 | 1208 | 90.791000 | 5523 | 6428 | 1 | chr4A.!!$R1 | 905 |
14 | TraesCS5D01G267300 | chr4A | 682992472 | 682993066 | 594 | False | 782.000000 | 782 | 90.924000 | 2798 | 3373 | 1 | chr4A.!!$F2 | 575 |
15 | TraesCS5D01G267300 | chr2A | 22736393 | 22737311 | 918 | False | 1182.000000 | 1182 | 90.228000 | 5527 | 6428 | 1 | chr2A.!!$F1 | 901 |
16 | TraesCS5D01G267300 | chr2A | 121949192 | 121950098 | 906 | False | 955.000000 | 955 | 85.948000 | 5527 | 6428 | 1 | chr2A.!!$F2 | 901 |
17 | TraesCS5D01G267300 | chr2A | 640273397 | 640273957 | 560 | True | 258.550000 | 444 | 88.387000 | 2860 | 3445 | 2 | chr2A.!!$R5 | 585 |
18 | TraesCS5D01G267300 | chr6A | 553764725 | 553765337 | 612 | True | 437.650000 | 780 | 91.169000 | 2798 | 3446 | 2 | chr6A.!!$R3 | 648 |
19 | TraesCS5D01G267300 | chr1A | 441837175 | 441837758 | 583 | False | 754.000000 | 754 | 90.323000 | 2797 | 3370 | 1 | chr1A.!!$F2 | 573 |
20 | TraesCS5D01G267300 | chr3A | 437990014 | 437990607 | 593 | True | 420.150000 | 745 | 91.834000 | 2798 | 3435 | 2 | chr3A.!!$R3 | 637 |
21 | TraesCS5D01G267300 | chr1D | 474732224 | 474732842 | 618 | True | 312.950000 | 538 | 91.284500 | 2798 | 3445 | 2 | chr1D.!!$R5 | 647 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
201 | 2119 | 0.108945 | AACGGACGGCAAGCTACTAC | 60.109 | 55.0 | 0.00 | 0.00 | 0.00 | 2.73 | F |
494 | 3922 | 0.246635 | CTGTCTCAACCGTAGTGGGG | 59.753 | 60.0 | 0.00 | 0.00 | 44.64 | 4.96 | F |
981 | 4475 | 1.032114 | GCCTTTCTGCTGCCCGTTAT | 61.032 | 55.0 | 0.00 | 0.00 | 0.00 | 1.89 | F |
2782 | 10521 | 0.035056 | GGCCTCCTGCAGCTTAGAAA | 60.035 | 55.0 | 8.66 | 0.00 | 43.89 | 2.52 | F |
2789 | 10528 | 0.685097 | TGCAGCTTAGAAAGACCGGT | 59.315 | 50.0 | 6.92 | 6.92 | 0.00 | 5.28 | F |
3950 | 11748 | 0.106167 | AGCCCAGATCTGCATGCATT | 60.106 | 50.0 | 22.97 | 12.17 | 0.00 | 3.56 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2036 | 7918 | 1.309950 | ATCGAGACGTCCGTGATGAT | 58.690 | 50.000 | 20.62 | 9.97 | 0.00 | 2.45 | R |
2302 | 8187 | 3.649981 | CTGGTCATATGAATGGAGGGAGT | 59.350 | 47.826 | 7.07 | 0.00 | 33.61 | 3.85 | R |
2787 | 10526 | 0.749649 | ATCCGCTCTCTGTGATCACC | 59.250 | 55.000 | 22.85 | 5.48 | 0.00 | 4.02 | R |
3933 | 11731 | 0.591659 | CGAATGCATGCAGATCTGGG | 59.408 | 55.000 | 26.69 | 10.23 | 0.00 | 4.45 | R |
4120 | 11919 | 0.737804 | AACGCACACTGCAAATCACA | 59.262 | 45.000 | 0.00 | 0.00 | 45.36 | 3.58 | R |
5580 | 13398 | 0.673644 | CGCCAAACCAGACGAAGGAT | 60.674 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
31 | 32 | 9.905171 | GTTATAGTAACTAGCTATGTTACCACC | 57.095 | 37.037 | 25.92 | 15.08 | 46.31 | 4.61 |
32 | 33 | 9.872684 | TTATAGTAACTAGCTATGTTACCACCT | 57.127 | 33.333 | 25.92 | 17.43 | 46.31 | 4.00 |
33 | 34 | 6.466885 | AGTAACTAGCTATGTTACCACCTG | 57.533 | 41.667 | 25.92 | 5.17 | 46.31 | 4.00 |
34 | 35 | 3.821421 | ACTAGCTATGTTACCACCTGC | 57.179 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
35 | 36 | 2.434702 | ACTAGCTATGTTACCACCTGCC | 59.565 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
36 | 37 | 1.584724 | AGCTATGTTACCACCTGCCT | 58.415 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
37 | 38 | 1.916181 | AGCTATGTTACCACCTGCCTT | 59.084 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
38 | 39 | 2.308866 | AGCTATGTTACCACCTGCCTTT | 59.691 | 45.455 | 0.00 | 0.00 | 0.00 | 3.11 |
39 | 40 | 3.089284 | GCTATGTTACCACCTGCCTTTT | 58.911 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
40 | 41 | 3.509967 | GCTATGTTACCACCTGCCTTTTT | 59.490 | 43.478 | 0.00 | 0.00 | 0.00 | 1.94 |
64 | 65 | 9.941325 | TTTTTCTTCATTAATTACATGCCACAT | 57.059 | 25.926 | 0.00 | 0.00 | 0.00 | 3.21 |
65 | 66 | 9.585099 | TTTTCTTCATTAATTACATGCCACATC | 57.415 | 29.630 | 0.00 | 0.00 | 0.00 | 3.06 |
66 | 67 | 7.878547 | TCTTCATTAATTACATGCCACATCA | 57.121 | 32.000 | 0.00 | 0.00 | 0.00 | 3.07 |
67 | 68 | 8.467963 | TCTTCATTAATTACATGCCACATCAT | 57.532 | 30.769 | 0.00 | 0.00 | 0.00 | 2.45 |
68 | 69 | 8.570488 | TCTTCATTAATTACATGCCACATCATC | 58.430 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
69 | 70 | 8.467963 | TTCATTAATTACATGCCACATCATCT | 57.532 | 30.769 | 0.00 | 0.00 | 0.00 | 2.90 |
70 | 71 | 9.571816 | TTCATTAATTACATGCCACATCATCTA | 57.428 | 29.630 | 0.00 | 0.00 | 0.00 | 1.98 |
71 | 72 | 9.743581 | TCATTAATTACATGCCACATCATCTAT | 57.256 | 29.630 | 0.00 | 0.00 | 0.00 | 1.98 |
76 | 77 | 7.643569 | TTACATGCCACATCATCTATTTTGT | 57.356 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
77 | 78 | 6.534475 | ACATGCCACATCATCTATTTTGTT | 57.466 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
78 | 79 | 6.938507 | ACATGCCACATCATCTATTTTGTTT | 58.061 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
79 | 80 | 8.065473 | ACATGCCACATCATCTATTTTGTTTA | 57.935 | 30.769 | 0.00 | 0.00 | 0.00 | 2.01 |
80 | 81 | 8.192774 | ACATGCCACATCATCTATTTTGTTTAG | 58.807 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
81 | 82 | 7.936496 | TGCCACATCATCTATTTTGTTTAGA | 57.064 | 32.000 | 0.00 | 0.00 | 0.00 | 2.10 |
82 | 83 | 8.523915 | TGCCACATCATCTATTTTGTTTAGAT | 57.476 | 30.769 | 0.00 | 0.00 | 36.97 | 1.98 |
83 | 84 | 9.625747 | TGCCACATCATCTATTTTGTTTAGATA | 57.374 | 29.630 | 0.00 | 0.00 | 35.22 | 1.98 |
110 | 111 | 5.339008 | TGATGTTATCACTGTGGGTAGTC | 57.661 | 43.478 | 8.11 | 1.25 | 33.59 | 2.59 |
111 | 112 | 5.023452 | TGATGTTATCACTGTGGGTAGTCT | 58.977 | 41.667 | 8.11 | 0.00 | 33.59 | 3.24 |
112 | 113 | 6.192044 | TGATGTTATCACTGTGGGTAGTCTA | 58.808 | 40.000 | 8.11 | 0.00 | 33.59 | 2.59 |
113 | 114 | 6.666113 | TGATGTTATCACTGTGGGTAGTCTAA | 59.334 | 38.462 | 8.11 | 0.00 | 33.59 | 2.10 |
114 | 115 | 6.525578 | TGTTATCACTGTGGGTAGTCTAAG | 57.474 | 41.667 | 8.11 | 0.00 | 0.00 | 2.18 |
115 | 116 | 5.105473 | TGTTATCACTGTGGGTAGTCTAAGC | 60.105 | 44.000 | 8.11 | 0.00 | 0.00 | 3.09 |
116 | 117 | 1.816835 | TCACTGTGGGTAGTCTAAGCG | 59.183 | 52.381 | 8.11 | 0.00 | 0.00 | 4.68 |
117 | 118 | 0.531200 | ACTGTGGGTAGTCTAAGCGC | 59.469 | 55.000 | 0.00 | 0.00 | 0.00 | 5.92 |
118 | 119 | 0.179108 | CTGTGGGTAGTCTAAGCGCC | 60.179 | 60.000 | 2.29 | 0.00 | 0.00 | 6.53 |
119 | 120 | 1.143401 | GTGGGTAGTCTAAGCGCCC | 59.857 | 63.158 | 2.29 | 0.00 | 39.73 | 6.13 |
120 | 121 | 2.062177 | TGGGTAGTCTAAGCGCCCC | 61.062 | 63.158 | 2.29 | 5.30 | 38.57 | 5.80 |
121 | 122 | 2.804912 | GGGTAGTCTAAGCGCCCCC | 61.805 | 68.421 | 2.29 | 0.00 | 33.40 | 5.40 |
122 | 123 | 1.761271 | GGTAGTCTAAGCGCCCCCT | 60.761 | 63.158 | 2.29 | 0.00 | 0.00 | 4.79 |
123 | 124 | 1.740905 | GTAGTCTAAGCGCCCCCTC | 59.259 | 63.158 | 2.29 | 0.00 | 0.00 | 4.30 |
124 | 125 | 1.041447 | GTAGTCTAAGCGCCCCCTCA | 61.041 | 60.000 | 2.29 | 0.00 | 0.00 | 3.86 |
160 | 161 | 4.151798 | GCTTCTTTATTCAGTTGTCGTGC | 58.848 | 43.478 | 0.00 | 0.00 | 0.00 | 5.34 |
184 | 2102 | 0.923911 | GCGTGCGTGTCTGAACAAAC | 60.924 | 55.000 | 0.00 | 0.00 | 37.08 | 2.93 |
185 | 2103 | 0.650476 | CGTGCGTGTCTGAACAAACG | 60.650 | 55.000 | 0.00 | 0.00 | 37.08 | 3.60 |
186 | 2104 | 0.315869 | GTGCGTGTCTGAACAAACGG | 60.316 | 55.000 | 0.00 | 0.00 | 37.08 | 4.44 |
198 | 2116 | 1.226030 | ACAAACGGACGGCAAGCTAC | 61.226 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
199 | 2117 | 0.949105 | CAAACGGACGGCAAGCTACT | 60.949 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
200 | 2118 | 0.604578 | AAACGGACGGCAAGCTACTA | 59.395 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
201 | 2119 | 0.108945 | AACGGACGGCAAGCTACTAC | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
207 | 2125 | 0.461870 | CGGCAAGCTACTACCATGCA | 60.462 | 55.000 | 6.63 | 0.00 | 38.73 | 3.96 |
210 | 2128 | 1.672881 | GCAAGCTACTACCATGCAAGG | 59.327 | 52.381 | 6.39 | 6.39 | 37.00 | 3.61 |
279 | 3648 | 1.000171 | CCATTCGCATCAGGAGATCGA | 60.000 | 52.381 | 0.00 | 0.00 | 34.42 | 3.59 |
291 | 3662 | 2.175931 | AGGAGATCGACTGGGTCTGTAT | 59.824 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
293 | 3664 | 2.222886 | AGATCGACTGGGTCTGTATCG | 58.777 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
299 | 3670 | 3.251571 | GACTGGGTCTGTATCGTCAAAC | 58.748 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
305 | 3676 | 5.209977 | GGGTCTGTATCGTCAAACAAAAAC | 58.790 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
308 | 3679 | 5.679792 | GTCTGTATCGTCAAACAAAAACCAC | 59.320 | 40.000 | 0.00 | 0.00 | 0.00 | 4.16 |
339 | 3765 | 7.254556 | CGTACCACGTCTATACATCTAGTTTGA | 60.255 | 40.741 | 0.00 | 0.00 | 36.74 | 2.69 |
344 | 3770 | 5.915758 | CGTCTATACATCTAGTTTGACTGCC | 59.084 | 44.000 | 3.04 | 0.00 | 0.00 | 4.85 |
346 | 3772 | 2.386661 | ACATCTAGTTTGACTGCCGG | 57.613 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
347 | 3773 | 1.009829 | CATCTAGTTTGACTGCCGGC | 58.990 | 55.000 | 22.73 | 22.73 | 0.00 | 6.13 |
348 | 3774 | 0.905357 | ATCTAGTTTGACTGCCGGCT | 59.095 | 50.000 | 29.70 | 8.29 | 0.00 | 5.52 |
494 | 3922 | 0.246635 | CTGTCTCAACCGTAGTGGGG | 59.753 | 60.000 | 0.00 | 0.00 | 44.64 | 4.96 |
545 | 3973 | 1.596408 | CCAAATCGGGGCAAAAGGG | 59.404 | 57.895 | 0.00 | 0.00 | 0.00 | 3.95 |
685 | 4149 | 2.228059 | GCTACGTAGAGGCATGGAGTA | 58.772 | 52.381 | 26.53 | 0.00 | 0.00 | 2.59 |
742 | 4211 | 2.037871 | CCACCCAACTTTTCCACGG | 58.962 | 57.895 | 0.00 | 0.00 | 0.00 | 4.94 |
746 | 4216 | 1.894756 | CCAACTTTTCCACGGCGGA | 60.895 | 57.895 | 13.24 | 0.00 | 44.40 | 5.54 |
782 | 4257 | 1.300931 | GTGCCTGCTGACTTCGACA | 60.301 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
948 | 4442 | 2.433145 | ATCACACACAGAGCGGCG | 60.433 | 61.111 | 0.51 | 0.51 | 0.00 | 6.46 |
950 | 4444 | 2.230994 | ATCACACACAGAGCGGCGAT | 62.231 | 55.000 | 12.98 | 2.76 | 0.00 | 4.58 |
980 | 4474 | 1.674322 | GCCTTTCTGCTGCCCGTTA | 60.674 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
981 | 4475 | 1.032114 | GCCTTTCTGCTGCCCGTTAT | 61.032 | 55.000 | 0.00 | 0.00 | 0.00 | 1.89 |
982 | 4476 | 1.745827 | GCCTTTCTGCTGCCCGTTATA | 60.746 | 52.381 | 0.00 | 0.00 | 0.00 | 0.98 |
1263 | 5187 | 6.700520 | GTGATGGTTTCCTTCCTACGTATAAG | 59.299 | 42.308 | 0.00 | 3.35 | 0.00 | 1.73 |
1264 | 5188 | 6.381994 | TGATGGTTTCCTTCCTACGTATAAGT | 59.618 | 38.462 | 13.68 | 0.00 | 0.00 | 2.24 |
1265 | 5189 | 5.969423 | TGGTTTCCTTCCTACGTATAAGTG | 58.031 | 41.667 | 13.68 | 7.83 | 0.00 | 3.16 |
1266 | 5190 | 5.481473 | TGGTTTCCTTCCTACGTATAAGTGT | 59.519 | 40.000 | 13.68 | 0.00 | 0.00 | 3.55 |
1267 | 5191 | 6.663093 | TGGTTTCCTTCCTACGTATAAGTGTA | 59.337 | 38.462 | 13.68 | 0.00 | 0.00 | 2.90 |
1268 | 5192 | 6.975197 | GGTTTCCTTCCTACGTATAAGTGTAC | 59.025 | 42.308 | 13.68 | 9.26 | 0.00 | 2.90 |
1269 | 5193 | 7.148000 | GGTTTCCTTCCTACGTATAAGTGTACT | 60.148 | 40.741 | 13.68 | 0.00 | 0.00 | 2.73 |
1270 | 5194 | 7.559590 | TTCCTTCCTACGTATAAGTGTACTC | 57.440 | 40.000 | 13.68 | 0.00 | 0.00 | 2.59 |
1271 | 5195 | 6.893583 | TCCTTCCTACGTATAAGTGTACTCT | 58.106 | 40.000 | 13.68 | 0.00 | 0.00 | 3.24 |
1272 | 5196 | 7.341805 | TCCTTCCTACGTATAAGTGTACTCTT | 58.658 | 38.462 | 14.17 | 14.17 | 0.00 | 2.85 |
1273 | 5197 | 7.831193 | TCCTTCCTACGTATAAGTGTACTCTTT | 59.169 | 37.037 | 14.87 | 6.56 | 0.00 | 2.52 |
1274 | 5198 | 8.127954 | CCTTCCTACGTATAAGTGTACTCTTTC | 58.872 | 40.741 | 14.87 | 6.39 | 0.00 | 2.62 |
1275 | 5199 | 8.798859 | TTCCTACGTATAAGTGTACTCTTTCT | 57.201 | 34.615 | 14.87 | 6.59 | 0.00 | 2.52 |
1276 | 5200 | 8.798859 | TCCTACGTATAAGTGTACTCTTTCTT | 57.201 | 34.615 | 14.87 | 4.60 | 0.00 | 2.52 |
1277 | 5201 | 9.236006 | TCCTACGTATAAGTGTACTCTTTCTTT | 57.764 | 33.333 | 14.87 | 2.48 | 0.00 | 2.52 |
1278 | 5202 | 9.852091 | CCTACGTATAAGTGTACTCTTTCTTTT | 57.148 | 33.333 | 14.87 | 1.88 | 0.00 | 2.27 |
1442 | 5999 | 5.344128 | GTGACGTGTCTAATTAACGATGTGT | 59.656 | 40.000 | 13.58 | 0.00 | 39.64 | 3.72 |
1443 | 6000 | 5.343860 | TGACGTGTCTAATTAACGATGTGTG | 59.656 | 40.000 | 13.58 | 0.00 | 39.64 | 3.82 |
1444 | 6001 | 5.224888 | ACGTGTCTAATTAACGATGTGTGT | 58.775 | 37.500 | 13.58 | 0.00 | 39.64 | 3.72 |
1445 | 6002 | 5.693104 | ACGTGTCTAATTAACGATGTGTGTT | 59.307 | 36.000 | 13.58 | 0.00 | 39.64 | 3.32 |
1446 | 6003 | 6.201425 | ACGTGTCTAATTAACGATGTGTGTTT | 59.799 | 34.615 | 13.58 | 0.00 | 39.64 | 2.83 |
1447 | 6004 | 7.067116 | CGTGTCTAATTAACGATGTGTGTTTT | 58.933 | 34.615 | 2.67 | 0.00 | 39.64 | 2.43 |
1448 | 6005 | 7.584847 | CGTGTCTAATTAACGATGTGTGTTTTT | 59.415 | 33.333 | 2.67 | 0.00 | 39.64 | 1.94 |
1469 | 6026 | 7.985634 | TTTTTCTTTTTGAGAGGAATGAACG | 57.014 | 32.000 | 0.00 | 0.00 | 35.37 | 3.95 |
1470 | 6027 | 6.935741 | TTTCTTTTTGAGAGGAATGAACGA | 57.064 | 33.333 | 0.00 | 0.00 | 35.37 | 3.85 |
1471 | 6028 | 7.510549 | TTTCTTTTTGAGAGGAATGAACGAT | 57.489 | 32.000 | 0.00 | 0.00 | 35.37 | 3.73 |
1472 | 6029 | 6.486253 | TCTTTTTGAGAGGAATGAACGATG | 57.514 | 37.500 | 0.00 | 0.00 | 0.00 | 3.84 |
1473 | 6030 | 5.997746 | TCTTTTTGAGAGGAATGAACGATGT | 59.002 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1474 | 6031 | 5.611796 | TTTTGAGAGGAATGAACGATGTG | 57.388 | 39.130 | 0.00 | 0.00 | 0.00 | 3.21 |
1632 | 6220 | 6.258507 | ACAAAAGAAAATGTCTGCACAAATCC | 59.741 | 34.615 | 0.00 | 0.00 | 36.40 | 3.01 |
1635 | 6223 | 3.837213 | AAATGTCTGCACAAATCCTCG | 57.163 | 42.857 | 0.00 | 0.00 | 35.64 | 4.63 |
1657 | 6245 | 4.612614 | CGCGTAAAATCAATGGCATATGAC | 59.387 | 41.667 | 6.97 | 3.57 | 0.00 | 3.06 |
1678 | 6266 | 6.582636 | TGACTTAGATGTGCAATACTTAGGG | 58.417 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1767 | 6359 | 6.063404 | TCCCGTTCCAAACAGTTATAAGTTT | 58.937 | 36.000 | 0.00 | 0.00 | 38.40 | 2.66 |
1836 | 6428 | 8.989653 | AAGAGTGTTTTAGATTAGAGTGTAGC | 57.010 | 34.615 | 0.00 | 0.00 | 0.00 | 3.58 |
1854 | 6446 | 1.808945 | AGCTTCACTCATTTTGCTCCG | 59.191 | 47.619 | 0.00 | 0.00 | 0.00 | 4.63 |
1855 | 6447 | 1.730446 | GCTTCACTCATTTTGCTCCGC | 60.730 | 52.381 | 0.00 | 0.00 | 0.00 | 5.54 |
1864 | 6456 | 3.126858 | TCATTTTGCTCCGCATGTAGTTC | 59.873 | 43.478 | 0.00 | 0.00 | 38.76 | 3.01 |
1870 | 6462 | 3.809279 | TGCTCCGCATGTAGTTCATATTG | 59.191 | 43.478 | 0.00 | 0.00 | 34.67 | 1.90 |
1977 | 7854 | 5.515797 | ACTTCTTGAAAAAGGTGTAAGGC | 57.484 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
2036 | 7918 | 9.766277 | GCAAAGAAAATGTGTTAATTGACAAAA | 57.234 | 25.926 | 4.40 | 0.00 | 0.00 | 2.44 |
2062 | 7944 | 3.314357 | TCACGGACGTCTCGATATCAATT | 59.686 | 43.478 | 26.02 | 5.19 | 0.00 | 2.32 |
2347 | 8238 | 7.708752 | CCAGTTTTGCTAAAGGAAAATGTACAA | 59.291 | 33.333 | 11.76 | 0.00 | 44.79 | 2.41 |
2352 | 8243 | 5.594725 | TGCTAAAGGAAAATGTACAACACCA | 59.405 | 36.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2358 | 8249 | 7.833285 | AGGAAAATGTACAACACCATAACTT | 57.167 | 32.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2388 | 8279 | 8.327271 | TCTAAGTAGGATGTATATAGAGGCGTT | 58.673 | 37.037 | 0.00 | 0.00 | 0.00 | 4.84 |
2390 | 8281 | 7.778185 | AGTAGGATGTATATAGAGGCGTTTT | 57.222 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2391 | 8282 | 8.874744 | AGTAGGATGTATATAGAGGCGTTTTA | 57.125 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
2396 | 8287 | 8.656849 | GGATGTATATAGAGGCGTTTTAATGTG | 58.343 | 37.037 | 0.00 | 0.00 | 0.00 | 3.21 |
2397 | 8288 | 9.204570 | GATGTATATAGAGGCGTTTTAATGTGT | 57.795 | 33.333 | 0.00 | 0.00 | 0.00 | 3.72 |
2399 | 8290 | 9.386010 | TGTATATAGAGGCGTTTTAATGTGTTT | 57.614 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
2400 | 8291 | 9.646336 | GTATATAGAGGCGTTTTAATGTGTTTG | 57.354 | 33.333 | 0.00 | 0.00 | 0.00 | 2.93 |
2401 | 8292 | 4.911514 | AGAGGCGTTTTAATGTGTTTGT | 57.088 | 36.364 | 0.00 | 0.00 | 0.00 | 2.83 |
2403 | 8294 | 5.278604 | AGAGGCGTTTTAATGTGTTTGTTC | 58.721 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
2404 | 8295 | 5.000012 | AGGCGTTTTAATGTGTTTGTTCA | 58.000 | 34.783 | 0.00 | 0.00 | 0.00 | 3.18 |
2405 | 8296 | 4.801516 | AGGCGTTTTAATGTGTTTGTTCAC | 59.198 | 37.500 | 0.00 | 0.00 | 38.63 | 3.18 |
2406 | 8297 | 4.801516 | GGCGTTTTAATGTGTTTGTTCACT | 59.198 | 37.500 | 0.00 | 0.00 | 38.90 | 3.41 |
2407 | 8298 | 5.051973 | GGCGTTTTAATGTGTTTGTTCACTC | 60.052 | 40.000 | 0.00 | 0.00 | 38.90 | 3.51 |
2408 | 8299 | 5.513495 | GCGTTTTAATGTGTTTGTTCACTCA | 59.487 | 36.000 | 0.00 | 0.00 | 38.90 | 3.41 |
2409 | 8300 | 6.198216 | GCGTTTTAATGTGTTTGTTCACTCAT | 59.802 | 34.615 | 0.00 | 0.00 | 38.90 | 2.90 |
2410 | 8301 | 7.253950 | GCGTTTTAATGTGTTTGTTCACTCATT | 60.254 | 33.333 | 6.42 | 6.42 | 41.48 | 2.57 |
2411 | 8302 | 8.591312 | CGTTTTAATGTGTTTGTTCACTCATTT | 58.409 | 29.630 | 6.47 | 0.00 | 40.01 | 2.32 |
2416 | 8307 | 8.856490 | AATGTGTTTGTTCACTCATTTTAGTC | 57.144 | 30.769 | 0.00 | 0.00 | 37.51 | 2.59 |
2417 | 8308 | 7.624360 | TGTGTTTGTTCACTCATTTTAGTCT | 57.376 | 32.000 | 0.00 | 0.00 | 38.90 | 3.24 |
2418 | 8309 | 8.725405 | TGTGTTTGTTCACTCATTTTAGTCTA | 57.275 | 30.769 | 0.00 | 0.00 | 38.90 | 2.59 |
2468 | 8359 | 9.941991 | CAAAATATTTTCTACAAAATGCTGTCG | 57.058 | 29.630 | 10.53 | 0.00 | 41.47 | 4.35 |
2478 | 8369 | 9.974980 | TCTACAAAATGCTGTCGATAATATGTA | 57.025 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
2480 | 8371 | 8.432110 | ACAAAATGCTGTCGATAATATGTACA | 57.568 | 30.769 | 0.00 | 0.00 | 0.00 | 2.90 |
2481 | 8372 | 8.335356 | ACAAAATGCTGTCGATAATATGTACAC | 58.665 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
2483 | 8374 | 4.878439 | TGCTGTCGATAATATGTACACCC | 58.122 | 43.478 | 0.00 | 0.00 | 0.00 | 4.61 |
2502 | 8439 | 7.040473 | ACACCCTCTATCTAAATGTAAGACG | 57.960 | 40.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2505 | 8442 | 7.648510 | CACCCTCTATCTAAATGTAAGACGTTC | 59.351 | 40.741 | 0.00 | 0.00 | 0.00 | 3.95 |
2529 | 8466 | 8.060020 | TCTTGCAGTTTAATTTGAATGAAACG | 57.940 | 30.769 | 9.83 | 7.26 | 42.23 | 3.60 |
2589 | 10047 | 6.370718 | GGGTAAATGCACTCGGTAATTATAGG | 59.629 | 42.308 | 0.00 | 0.00 | 0.00 | 2.57 |
2592 | 10050 | 9.136952 | GTAAATGCACTCGGTAATTATAGGTAG | 57.863 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
2617 | 10080 | 3.005539 | AGCTGACACGGGCCATCT | 61.006 | 61.111 | 4.39 | 0.00 | 0.00 | 2.90 |
2618 | 10081 | 2.045926 | GCTGACACGGGCCATCTT | 60.046 | 61.111 | 4.39 | 0.00 | 0.00 | 2.40 |
2619 | 10082 | 2.401766 | GCTGACACGGGCCATCTTG | 61.402 | 63.158 | 4.39 | 0.00 | 0.00 | 3.02 |
2620 | 10083 | 1.003355 | CTGACACGGGCCATCTTGT | 60.003 | 57.895 | 4.39 | 0.46 | 0.00 | 3.16 |
2621 | 10084 | 0.249120 | CTGACACGGGCCATCTTGTA | 59.751 | 55.000 | 4.39 | 0.00 | 0.00 | 2.41 |
2782 | 10521 | 0.035056 | GGCCTCCTGCAGCTTAGAAA | 60.035 | 55.000 | 8.66 | 0.00 | 43.89 | 2.52 |
2785 | 10524 | 2.626840 | CCTCCTGCAGCTTAGAAAGAC | 58.373 | 52.381 | 8.66 | 0.00 | 0.00 | 3.01 |
2787 | 10526 | 1.066858 | TCCTGCAGCTTAGAAAGACCG | 60.067 | 52.381 | 8.66 | 0.00 | 0.00 | 4.79 |
2788 | 10527 | 1.363744 | CTGCAGCTTAGAAAGACCGG | 58.636 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
2789 | 10528 | 0.685097 | TGCAGCTTAGAAAGACCGGT | 59.315 | 50.000 | 6.92 | 6.92 | 0.00 | 5.28 |
2790 | 10529 | 1.079503 | GCAGCTTAGAAAGACCGGTG | 58.920 | 55.000 | 14.63 | 0.00 | 0.00 | 4.94 |
2791 | 10530 | 1.337823 | GCAGCTTAGAAAGACCGGTGA | 60.338 | 52.381 | 14.63 | 0.00 | 0.00 | 4.02 |
2792 | 10531 | 2.678190 | GCAGCTTAGAAAGACCGGTGAT | 60.678 | 50.000 | 14.63 | 0.00 | 0.00 | 3.06 |
2794 | 10533 | 2.832129 | AGCTTAGAAAGACCGGTGATCA | 59.168 | 45.455 | 14.63 | 0.00 | 0.00 | 2.92 |
2858 | 10599 | 2.632377 | CATCACCTACCCACATGTCAC | 58.368 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
2915 | 10662 | 8.209584 | CAGGTGAATAGTAGTACCTACTCTACA | 58.790 | 40.741 | 7.17 | 4.39 | 42.87 | 2.74 |
2930 | 10677 | 6.770785 | CCTACTCTACATATCAGCCTATCTCC | 59.229 | 46.154 | 0.00 | 0.00 | 0.00 | 3.71 |
2999 | 10746 | 7.410174 | TGAAACCCACATAGATTATGAACCTT | 58.590 | 34.615 | 3.26 | 0.00 | 39.45 | 3.50 |
3060 | 10807 | 4.512198 | TCGCGATGAGACCTTTTAAACAAA | 59.488 | 37.500 | 3.71 | 0.00 | 0.00 | 2.83 |
3064 | 10811 | 6.032460 | GCGATGAGACCTTTTAAACAAAATCG | 59.968 | 38.462 | 0.00 | 0.00 | 0.00 | 3.34 |
3320 | 11075 | 3.328931 | AGACATGAGATGGTGGACAAAGT | 59.671 | 43.478 | 0.00 | 0.00 | 33.60 | 2.66 |
3374 | 11172 | 2.689553 | TGTGACAAGACACAAGAGCA | 57.310 | 45.000 | 3.02 | 0.00 | 45.81 | 4.26 |
3375 | 11173 | 3.198409 | TGTGACAAGACACAAGAGCAT | 57.802 | 42.857 | 3.02 | 0.00 | 45.81 | 3.79 |
3376 | 11174 | 3.133691 | TGTGACAAGACACAAGAGCATC | 58.866 | 45.455 | 3.02 | 0.00 | 45.81 | 3.91 |
3377 | 11175 | 3.181462 | TGTGACAAGACACAAGAGCATCT | 60.181 | 43.478 | 3.02 | 0.00 | 45.81 | 2.90 |
3378 | 11176 | 5.272131 | TGTGACAAGACACAAGAGCATCTG | 61.272 | 45.833 | 3.02 | 0.00 | 44.36 | 2.90 |
3400 | 11198 | 9.812347 | ATCTGGTGGATGAAGCATAATAATAAA | 57.188 | 29.630 | 0.00 | 0.00 | 32.69 | 1.40 |
3401 | 11199 | 9.812347 | TCTGGTGGATGAAGCATAATAATAAAT | 57.188 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
3402 | 11200 | 9.850628 | CTGGTGGATGAAGCATAATAATAAATG | 57.149 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
3403 | 11201 | 8.805175 | TGGTGGATGAAGCATAATAATAAATGG | 58.195 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3404 | 11202 | 8.806146 | GGTGGATGAAGCATAATAATAAATGGT | 58.194 | 33.333 | 0.00 | 0.00 | 35.43 | 3.55 |
3414 | 11212 | 9.964303 | GCATAATAATAAATGGTTGATGTGACA | 57.036 | 29.630 | 0.00 | 0.00 | 0.00 | 3.58 |
3419 | 11217 | 7.523293 | AATAAATGGTTGATGTGACAAGACA | 57.477 | 32.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3420 | 11218 | 4.836125 | AATGGTTGATGTGACAAGACAC | 57.164 | 40.909 | 0.00 | 0.00 | 40.68 | 3.67 |
3439 | 11237 | 8.687242 | CAAGACACAAGAGTAGTAGAATATGGA | 58.313 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
3440 | 11238 | 8.458573 | AGACACAAGAGTAGTAGAATATGGAG | 57.541 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
3441 | 11239 | 8.275758 | AGACACAAGAGTAGTAGAATATGGAGA | 58.724 | 37.037 | 0.00 | 0.00 | 0.00 | 3.71 |
3442 | 11240 | 8.824756 | ACACAAGAGTAGTAGAATATGGAGAA | 57.175 | 34.615 | 0.00 | 0.00 | 0.00 | 2.87 |
3443 | 11241 | 9.427821 | ACACAAGAGTAGTAGAATATGGAGAAT | 57.572 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
3447 | 11245 | 9.815306 | AAGAGTAGTAGAATATGGAGAATAGCA | 57.185 | 33.333 | 0.00 | 0.00 | 0.00 | 3.49 |
3448 | 11246 | 9.815306 | AGAGTAGTAGAATATGGAGAATAGCAA | 57.185 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
3476 | 11274 | 7.429636 | TGCTAAACATACAAAGAGTTACACC | 57.570 | 36.000 | 0.00 | 0.00 | 0.00 | 4.16 |
3477 | 11275 | 6.428771 | TGCTAAACATACAAAGAGTTACACCC | 59.571 | 38.462 | 0.00 | 0.00 | 0.00 | 4.61 |
3478 | 11276 | 6.428771 | GCTAAACATACAAAGAGTTACACCCA | 59.571 | 38.462 | 0.00 | 0.00 | 0.00 | 4.51 |
3479 | 11277 | 7.040961 | GCTAAACATACAAAGAGTTACACCCAA | 60.041 | 37.037 | 0.00 | 0.00 | 0.00 | 4.12 |
3480 | 11278 | 7.833285 | AAACATACAAAGAGTTACACCCAAT | 57.167 | 32.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3481 | 11279 | 7.833285 | AACATACAAAGAGTTACACCCAATT | 57.167 | 32.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3482 | 11280 | 8.927675 | AACATACAAAGAGTTACACCCAATTA | 57.072 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
3483 | 11281 | 8.331730 | ACATACAAAGAGTTACACCCAATTAC | 57.668 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
3484 | 11282 | 7.940137 | ACATACAAAGAGTTACACCCAATTACA | 59.060 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
3485 | 11283 | 6.628919 | ACAAAGAGTTACACCCAATTACAC | 57.371 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
3486 | 11284 | 5.237779 | ACAAAGAGTTACACCCAATTACACG | 59.762 | 40.000 | 0.00 | 0.00 | 0.00 | 4.49 |
3487 | 11285 | 3.332034 | AGAGTTACACCCAATTACACGC | 58.668 | 45.455 | 0.00 | 0.00 | 0.00 | 5.34 |
3488 | 11286 | 3.007614 | AGAGTTACACCCAATTACACGCT | 59.992 | 43.478 | 0.00 | 0.00 | 0.00 | 5.07 |
3489 | 11287 | 3.071479 | AGTTACACCCAATTACACGCTG | 58.929 | 45.455 | 0.00 | 0.00 | 0.00 | 5.18 |
3490 | 11288 | 3.068560 | GTTACACCCAATTACACGCTGA | 58.931 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
3491 | 11289 | 1.519408 | ACACCCAATTACACGCTGAC | 58.481 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3492 | 11290 | 1.071699 | ACACCCAATTACACGCTGACT | 59.928 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
3493 | 11291 | 2.300723 | ACACCCAATTACACGCTGACTA | 59.699 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
3494 | 11292 | 2.930040 | CACCCAATTACACGCTGACTAG | 59.070 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3495 | 11293 | 2.093658 | ACCCAATTACACGCTGACTAGG | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3496 | 11294 | 2.167693 | CCCAATTACACGCTGACTAGGA | 59.832 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
3497 | 11295 | 3.181465 | CCCAATTACACGCTGACTAGGAT | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 3.24 |
3498 | 11296 | 4.442706 | CCAATTACACGCTGACTAGGATT | 58.557 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
3499 | 11297 | 4.876107 | CCAATTACACGCTGACTAGGATTT | 59.124 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
3500 | 11298 | 5.354234 | CCAATTACACGCTGACTAGGATTTT | 59.646 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3501 | 11299 | 6.128007 | CCAATTACACGCTGACTAGGATTTTT | 60.128 | 38.462 | 0.00 | 0.00 | 0.00 | 1.94 |
3854 | 11652 | 9.961264 | TCAAATTAACCCTTTTTGTAAAACCTT | 57.039 | 25.926 | 0.00 | 0.00 | 33.24 | 3.50 |
3855 | 11653 | 9.995957 | CAAATTAACCCTTTTTGTAAAACCTTG | 57.004 | 29.630 | 0.00 | 0.00 | 0.00 | 3.61 |
3856 | 11654 | 9.742144 | AAATTAACCCTTTTTGTAAAACCTTGT | 57.258 | 25.926 | 0.00 | 0.00 | 0.00 | 3.16 |
3859 | 11657 | 9.650539 | TTAACCCTTTTTGTAAAACCTTGTAAC | 57.349 | 29.630 | 0.00 | 0.00 | 0.00 | 2.50 |
3860 | 11658 | 7.484993 | ACCCTTTTTGTAAAACCTTGTAACT | 57.515 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3861 | 11659 | 7.549839 | ACCCTTTTTGTAAAACCTTGTAACTC | 58.450 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
3862 | 11660 | 6.693978 | CCCTTTTTGTAAAACCTTGTAACTCG | 59.306 | 38.462 | 0.00 | 0.00 | 0.00 | 4.18 |
3863 | 11661 | 7.252708 | CCTTTTTGTAAAACCTTGTAACTCGT | 58.747 | 34.615 | 0.00 | 0.00 | 0.00 | 4.18 |
3864 | 11662 | 7.756272 | CCTTTTTGTAAAACCTTGTAACTCGTT | 59.244 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
3865 | 11663 | 9.131416 | CTTTTTGTAAAACCTTGTAACTCGTTT | 57.869 | 29.630 | 0.00 | 0.00 | 0.00 | 3.60 |
3866 | 11664 | 8.450385 | TTTTGTAAAACCTTGTAACTCGTTTG | 57.550 | 30.769 | 0.00 | 0.00 | 0.00 | 2.93 |
3867 | 11665 | 6.740411 | TGTAAAACCTTGTAACTCGTTTGT | 57.260 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
3868 | 11666 | 7.840342 | TGTAAAACCTTGTAACTCGTTTGTA | 57.160 | 32.000 | 0.00 | 0.00 | 0.00 | 2.41 |
3869 | 11667 | 7.683746 | TGTAAAACCTTGTAACTCGTTTGTAC | 58.316 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
3883 | 11681 | 5.109815 | CGTTTGTACGTGTAGCATTACTC | 57.890 | 43.478 | 0.00 | 0.00 | 42.72 | 2.59 |
3884 | 11682 | 4.258743 | CGTTTGTACGTGTAGCATTACTCG | 60.259 | 45.833 | 0.00 | 6.16 | 46.58 | 4.18 |
3885 | 11683 | 3.409851 | TGTACGTGTAGCATTACTCGG | 57.590 | 47.619 | 0.00 | 0.00 | 45.88 | 4.63 |
3916 | 11714 | 6.636705 | AGATGCAATTGAATAAGCAACATGT | 58.363 | 32.000 | 10.34 | 0.00 | 40.76 | 3.21 |
3917 | 11715 | 6.755141 | AGATGCAATTGAATAAGCAACATGTC | 59.245 | 34.615 | 10.34 | 3.20 | 40.76 | 3.06 |
3924 | 11722 | 7.872163 | TTGAATAAGCAACATGTCATGAAAC | 57.128 | 32.000 | 19.77 | 7.58 | 0.00 | 2.78 |
3933 | 11731 | 3.937706 | ACATGTCATGAAACTAGAGCAGC | 59.062 | 43.478 | 19.77 | 0.00 | 0.00 | 5.25 |
3950 | 11748 | 0.106167 | AGCCCAGATCTGCATGCATT | 60.106 | 50.000 | 22.97 | 12.17 | 0.00 | 3.56 |
3959 | 11757 | 1.862827 | TCTGCATGCATTCGAATCTCG | 59.137 | 47.619 | 22.97 | 5.31 | 42.10 | 4.04 |
3976 | 11774 | 3.273434 | TCTCGAAGAAATGGATGGCTTG | 58.727 | 45.455 | 0.00 | 0.00 | 34.09 | 4.01 |
4031 | 11829 | 4.573607 | ACATCATTTCTCGGTGATCACATG | 59.426 | 41.667 | 26.47 | 18.94 | 32.98 | 3.21 |
4051 | 11849 | 8.190122 | TCACATGCTGATCCAAAATACAAATAC | 58.810 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
4054 | 11853 | 7.099266 | TGCTGATCCAAAATACAAATACAGG | 57.901 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4055 | 11854 | 6.889177 | TGCTGATCCAAAATACAAATACAGGA | 59.111 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
4056 | 11855 | 7.067372 | TGCTGATCCAAAATACAAATACAGGAG | 59.933 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
4057 | 11856 | 7.333528 | TGATCCAAAATACAAATACAGGAGC | 57.666 | 36.000 | 0.00 | 0.00 | 0.00 | 4.70 |
4090 | 11889 | 8.492673 | TTGTTGTCATACTTTATCAGATCACC | 57.507 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
4104 | 11903 | 2.032030 | AGATCACCGAAAAGTGCAAACG | 60.032 | 45.455 | 0.00 | 0.00 | 37.68 | 3.60 |
4120 | 11919 | 3.056304 | CAAACGGCGGTCAAAATCAAAT | 58.944 | 40.909 | 13.24 | 0.00 | 0.00 | 2.32 |
4121 | 11920 | 2.346099 | ACGGCGGTCAAAATCAAATG | 57.654 | 45.000 | 13.24 | 0.00 | 0.00 | 2.32 |
4122 | 11921 | 1.611491 | ACGGCGGTCAAAATCAAATGT | 59.389 | 42.857 | 13.24 | 0.00 | 0.00 | 2.71 |
4123 | 11922 | 1.984990 | CGGCGGTCAAAATCAAATGTG | 59.015 | 47.619 | 0.00 | 0.00 | 0.00 | 3.21 |
4124 | 11923 | 2.351253 | CGGCGGTCAAAATCAAATGTGA | 60.351 | 45.455 | 0.00 | 0.00 | 38.41 | 3.58 |
4125 | 11924 | 3.673052 | CGGCGGTCAAAATCAAATGTGAT | 60.673 | 43.478 | 0.00 | 0.00 | 46.91 | 3.06 |
4150 | 11949 | 5.907197 | GCAGTGTGCGTTGAGTATATAAT | 57.093 | 39.130 | 0.00 | 0.00 | 31.71 | 1.28 |
4152 | 11951 | 6.715464 | GCAGTGTGCGTTGAGTATATAATTT | 58.285 | 36.000 | 0.00 | 0.00 | 31.71 | 1.82 |
4153 | 11952 | 7.186804 | GCAGTGTGCGTTGAGTATATAATTTT | 58.813 | 34.615 | 0.00 | 0.00 | 31.71 | 1.82 |
4156 | 11955 | 7.277098 | AGTGTGCGTTGAGTATATAATTTTCGT | 59.723 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
4158 | 11957 | 8.111836 | TGTGCGTTGAGTATATAATTTTCGTTC | 58.888 | 33.333 | 0.00 | 0.00 | 0.00 | 3.95 |
4159 | 11958 | 7.581600 | GTGCGTTGAGTATATAATTTTCGTTCC | 59.418 | 37.037 | 0.00 | 0.00 | 0.00 | 3.62 |
4161 | 11960 | 7.278629 | CGTTGAGTATATAATTTTCGTTCCCG | 58.721 | 38.462 | 0.00 | 0.00 | 0.00 | 5.14 |
4821 | 12634 | 2.430921 | GTGTCGCTGTCGTCCCAG | 60.431 | 66.667 | 0.00 | 0.00 | 36.96 | 4.45 |
4870 | 12683 | 3.907260 | TACTGCCTCCCGTCGTCGT | 62.907 | 63.158 | 0.71 | 0.00 | 35.01 | 4.34 |
5016 | 12829 | 3.450115 | CGGACGGTCAGGGTCTCC | 61.450 | 72.222 | 10.76 | 0.00 | 34.82 | 3.71 |
5143 | 12956 | 1.259840 | GGGCAGGTACGGGTACAAGA | 61.260 | 60.000 | 10.81 | 0.00 | 37.78 | 3.02 |
5575 | 13393 | 0.909843 | GCGCTAAAAGCTCATTTGCG | 59.090 | 50.000 | 25.32 | 25.32 | 39.60 | 4.85 |
5580 | 13398 | 2.419057 | AAAAGCTCATTTGCGGCGCA | 62.419 | 50.000 | 33.07 | 33.07 | 38.13 | 6.09 |
5647 | 13467 | 1.226018 | GCTAAAATTGAGCGCGCGT | 60.226 | 52.632 | 32.35 | 18.26 | 0.00 | 6.01 |
5649 | 13469 | 0.179225 | CTAAAATTGAGCGCGCGTGT | 60.179 | 50.000 | 32.35 | 19.55 | 0.00 | 4.49 |
5650 | 13470 | 1.059979 | CTAAAATTGAGCGCGCGTGTA | 59.940 | 47.619 | 32.35 | 14.75 | 0.00 | 2.90 |
5651 | 13471 | 0.179225 | AAAATTGAGCGCGCGTGTAG | 60.179 | 50.000 | 32.35 | 2.67 | 0.00 | 2.74 |
5652 | 13472 | 2.563086 | AAATTGAGCGCGCGTGTAGC | 62.563 | 55.000 | 32.35 | 14.38 | 43.95 | 3.58 |
6066 | 13926 | 1.302511 | GAAGGCTTCCTCGTTGGCA | 60.303 | 57.895 | 16.50 | 0.00 | 30.89 | 4.92 |
6069 | 13929 | 3.808692 | AAGGCTTCCTCGTTGGCAACA | 62.809 | 52.381 | 28.12 | 15.06 | 37.82 | 3.33 |
6125 | 13985 | 2.902846 | CTCGTCCTCCTCGGCGAT | 60.903 | 66.667 | 11.27 | 0.00 | 39.42 | 4.58 |
6231 | 14092 | 2.885113 | CGCGTGTGGAGATCCTGA | 59.115 | 61.111 | 0.00 | 0.00 | 36.82 | 3.86 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
38 | 39 | 9.941325 | ATGTGGCATGTAATTAATGAAGAAAAA | 57.059 | 25.926 | 0.00 | 0.00 | 0.00 | 1.94 |
39 | 40 | 9.585099 | GATGTGGCATGTAATTAATGAAGAAAA | 57.415 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
40 | 41 | 8.747471 | TGATGTGGCATGTAATTAATGAAGAAA | 58.253 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
41 | 42 | 8.291191 | TGATGTGGCATGTAATTAATGAAGAA | 57.709 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
42 | 43 | 7.878547 | TGATGTGGCATGTAATTAATGAAGA | 57.121 | 32.000 | 0.00 | 0.00 | 0.00 | 2.87 |
43 | 44 | 8.573885 | AGATGATGTGGCATGTAATTAATGAAG | 58.426 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
44 | 45 | 8.467963 | AGATGATGTGGCATGTAATTAATGAA | 57.532 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
45 | 46 | 9.743581 | ATAGATGATGTGGCATGTAATTAATGA | 57.256 | 29.630 | 0.00 | 0.00 | 29.35 | 2.57 |
50 | 51 | 8.698210 | ACAAAATAGATGATGTGGCATGTAATT | 58.302 | 29.630 | 0.00 | 0.00 | 29.35 | 1.40 |
51 | 52 | 8.241497 | ACAAAATAGATGATGTGGCATGTAAT | 57.759 | 30.769 | 0.00 | 0.00 | 29.35 | 1.89 |
52 | 53 | 7.643569 | ACAAAATAGATGATGTGGCATGTAA | 57.356 | 32.000 | 0.00 | 0.00 | 29.35 | 2.41 |
53 | 54 | 7.643569 | AACAAAATAGATGATGTGGCATGTA | 57.356 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
54 | 55 | 6.534475 | AACAAAATAGATGATGTGGCATGT | 57.466 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
55 | 56 | 8.407832 | TCTAAACAAAATAGATGATGTGGCATG | 58.592 | 33.333 | 0.00 | 0.00 | 0.00 | 4.06 |
56 | 57 | 8.523915 | TCTAAACAAAATAGATGATGTGGCAT | 57.476 | 30.769 | 0.00 | 0.00 | 0.00 | 4.40 |
57 | 58 | 7.936496 | TCTAAACAAAATAGATGATGTGGCA | 57.064 | 32.000 | 0.00 | 0.00 | 0.00 | 4.92 |
88 | 89 | 5.023452 | AGACTACCCACAGTGATAACATCA | 58.977 | 41.667 | 0.62 | 0.00 | 36.84 | 3.07 |
89 | 90 | 5.599999 | AGACTACCCACAGTGATAACATC | 57.400 | 43.478 | 0.62 | 0.00 | 0.00 | 3.06 |
90 | 91 | 6.407074 | GCTTAGACTACCCACAGTGATAACAT | 60.407 | 42.308 | 0.62 | 0.00 | 0.00 | 2.71 |
91 | 92 | 5.105473 | GCTTAGACTACCCACAGTGATAACA | 60.105 | 44.000 | 0.62 | 0.00 | 0.00 | 2.41 |
92 | 93 | 5.349809 | GCTTAGACTACCCACAGTGATAAC | 58.650 | 45.833 | 0.62 | 0.00 | 0.00 | 1.89 |
93 | 94 | 4.097437 | CGCTTAGACTACCCACAGTGATAA | 59.903 | 45.833 | 0.62 | 0.00 | 0.00 | 1.75 |
94 | 95 | 3.630769 | CGCTTAGACTACCCACAGTGATA | 59.369 | 47.826 | 0.62 | 0.00 | 0.00 | 2.15 |
95 | 96 | 2.427453 | CGCTTAGACTACCCACAGTGAT | 59.573 | 50.000 | 0.62 | 0.00 | 0.00 | 3.06 |
96 | 97 | 1.816835 | CGCTTAGACTACCCACAGTGA | 59.183 | 52.381 | 0.62 | 0.00 | 0.00 | 3.41 |
97 | 98 | 1.736032 | GCGCTTAGACTACCCACAGTG | 60.736 | 57.143 | 0.00 | 0.00 | 0.00 | 3.66 |
98 | 99 | 0.531200 | GCGCTTAGACTACCCACAGT | 59.469 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
99 | 100 | 0.179108 | GGCGCTTAGACTACCCACAG | 60.179 | 60.000 | 7.64 | 0.00 | 0.00 | 3.66 |
100 | 101 | 1.610554 | GGGCGCTTAGACTACCCACA | 61.611 | 60.000 | 7.64 | 0.00 | 40.52 | 4.17 |
101 | 102 | 1.143401 | GGGCGCTTAGACTACCCAC | 59.857 | 63.158 | 7.64 | 0.00 | 40.52 | 4.61 |
102 | 103 | 2.062177 | GGGGCGCTTAGACTACCCA | 61.062 | 63.158 | 7.64 | 0.00 | 42.76 | 4.51 |
103 | 104 | 2.804912 | GGGGGCGCTTAGACTACCC | 61.805 | 68.421 | 7.64 | 6.44 | 40.05 | 3.69 |
104 | 105 | 1.746322 | GAGGGGGCGCTTAGACTACC | 61.746 | 65.000 | 7.64 | 0.00 | 0.00 | 3.18 |
105 | 106 | 1.041447 | TGAGGGGGCGCTTAGACTAC | 61.041 | 60.000 | 7.64 | 0.00 | 0.00 | 2.73 |
106 | 107 | 0.324923 | TTGAGGGGGCGCTTAGACTA | 60.325 | 55.000 | 7.64 | 0.00 | 0.00 | 2.59 |
107 | 108 | 1.198759 | TTTGAGGGGGCGCTTAGACT | 61.199 | 55.000 | 7.64 | 0.00 | 0.00 | 3.24 |
108 | 109 | 0.322187 | TTTTGAGGGGGCGCTTAGAC | 60.322 | 55.000 | 7.64 | 0.00 | 0.00 | 2.59 |
109 | 110 | 0.402504 | TTTTTGAGGGGGCGCTTAGA | 59.597 | 50.000 | 7.64 | 0.00 | 0.00 | 2.10 |
110 | 111 | 2.955609 | TTTTTGAGGGGGCGCTTAG | 58.044 | 52.632 | 7.64 | 0.00 | 0.00 | 2.18 |
131 | 132 | 7.148573 | CGACAACTGAATAAAGAAGCATGTACT | 60.149 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
141 | 142 | 2.156891 | GCGCACGACAACTGAATAAAGA | 59.843 | 45.455 | 0.30 | 0.00 | 0.00 | 2.52 |
184 | 2102 | 1.226888 | GGTAGTAGCTTGCCGTCCG | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
185 | 2103 | 0.464452 | ATGGTAGTAGCTTGCCGTCC | 59.536 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
186 | 2104 | 1.571919 | CATGGTAGTAGCTTGCCGTC | 58.428 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
198 | 2116 | 1.524621 | CCGAGCCCTTGCATGGTAG | 60.525 | 63.158 | 16.81 | 4.42 | 41.13 | 3.18 |
199 | 2117 | 1.847798 | AACCGAGCCCTTGCATGGTA | 61.848 | 55.000 | 16.81 | 0.00 | 43.80 | 3.25 |
200 | 2118 | 2.713531 | AAACCGAGCCCTTGCATGGT | 62.714 | 55.000 | 16.81 | 0.00 | 45.72 | 3.55 |
201 | 2119 | 1.978617 | AAACCGAGCCCTTGCATGG | 60.979 | 57.895 | 11.68 | 11.68 | 41.13 | 3.66 |
207 | 2125 | 2.433436 | GATACAACAAACCGAGCCCTT | 58.567 | 47.619 | 0.00 | 0.00 | 0.00 | 3.95 |
210 | 2128 | 1.092348 | GGGATACAACAAACCGAGCC | 58.908 | 55.000 | 0.00 | 0.00 | 39.74 | 4.70 |
279 | 3648 | 2.631062 | TGTTTGACGATACAGACCCAGT | 59.369 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
291 | 3662 | 2.483106 | TGTCGTGGTTTTTGTTTGACGA | 59.517 | 40.909 | 0.00 | 0.00 | 33.72 | 4.20 |
293 | 3664 | 2.590712 | CGTGTCGTGGTTTTTGTTTGAC | 59.409 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
299 | 3670 | 1.664659 | TGGTACGTGTCGTGGTTTTTG | 59.335 | 47.619 | 0.00 | 0.00 | 41.39 | 2.44 |
323 | 3694 | 5.223382 | CCGGCAGTCAAACTAGATGTATAG | 58.777 | 45.833 | 0.00 | 0.00 | 0.00 | 1.31 |
339 | 3765 | 2.266055 | GTCAGCTAAGCCGGCAGT | 59.734 | 61.111 | 31.54 | 18.99 | 0.00 | 4.40 |
346 | 3772 | 3.854459 | GTGCGGCGTCAGCTAAGC | 61.854 | 66.667 | 9.37 | 0.00 | 44.37 | 3.09 |
347 | 3773 | 2.432456 | TGTGCGGCGTCAGCTAAG | 60.432 | 61.111 | 9.37 | 0.00 | 44.37 | 2.18 |
348 | 3774 | 2.736995 | GTGTGCGGCGTCAGCTAA | 60.737 | 61.111 | 9.37 | 0.00 | 44.37 | 3.09 |
494 | 3922 | 0.928451 | GTGTTGGACGTTGCTTTCGC | 60.928 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
539 | 3967 | 1.663702 | CGCACTCGTCGTCCCTTTT | 60.664 | 57.895 | 0.00 | 0.00 | 0.00 | 2.27 |
545 | 3973 | 4.477975 | CCCCTCGCACTCGTCGTC | 62.478 | 72.222 | 0.00 | 0.00 | 36.96 | 4.20 |
723 | 4191 | 1.362355 | CGTGGAAAAGTTGGGTGGC | 59.638 | 57.895 | 0.00 | 0.00 | 0.00 | 5.01 |
840 | 4325 | 2.202987 | CTGGCGAGCCAAGCTAGG | 60.203 | 66.667 | 18.19 | 1.31 | 46.63 | 3.02 |
948 | 4442 | 0.470341 | AAAGGCCGGCTTCCTAGATC | 59.530 | 55.000 | 28.56 | 5.83 | 32.65 | 2.75 |
950 | 4444 | 0.617820 | AGAAAGGCCGGCTTCCTAGA | 60.618 | 55.000 | 28.56 | 0.00 | 32.65 | 2.43 |
978 | 4472 | 5.324784 | TGCACGAAGCTTCTTCTCTATAA | 57.675 | 39.130 | 23.50 | 0.00 | 45.94 | 0.98 |
980 | 4474 | 3.876274 | TGCACGAAGCTTCTTCTCTAT | 57.124 | 42.857 | 23.50 | 0.00 | 45.94 | 1.98 |
981 | 4475 | 3.515630 | CATGCACGAAGCTTCTTCTCTA | 58.484 | 45.455 | 23.50 | 6.23 | 45.94 | 2.43 |
982 | 4476 | 2.344950 | CATGCACGAAGCTTCTTCTCT | 58.655 | 47.619 | 23.50 | 3.63 | 45.94 | 3.10 |
1281 | 5205 | 9.990360 | TGAAAGAGTACACTTATACAACATTCA | 57.010 | 29.630 | 5.96 | 0.84 | 0.00 | 2.57 |
1445 | 6002 | 7.767261 | TCGTTCATTCCTCTCAAAAAGAAAAA | 58.233 | 30.769 | 0.00 | 0.00 | 32.23 | 1.94 |
1446 | 6003 | 7.328277 | TCGTTCATTCCTCTCAAAAAGAAAA | 57.672 | 32.000 | 0.00 | 0.00 | 32.23 | 2.29 |
1447 | 6004 | 6.935741 | TCGTTCATTCCTCTCAAAAAGAAA | 57.064 | 33.333 | 0.00 | 0.00 | 32.23 | 2.52 |
1448 | 6005 | 6.486657 | ACATCGTTCATTCCTCTCAAAAAGAA | 59.513 | 34.615 | 0.00 | 0.00 | 32.23 | 2.52 |
1449 | 6006 | 5.997746 | ACATCGTTCATTCCTCTCAAAAAGA | 59.002 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1450 | 6007 | 6.082338 | CACATCGTTCATTCCTCTCAAAAAG | 58.918 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
1451 | 6008 | 5.530915 | ACACATCGTTCATTCCTCTCAAAAA | 59.469 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
1452 | 6009 | 5.063204 | ACACATCGTTCATTCCTCTCAAAA | 58.937 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
1453 | 6010 | 4.641396 | ACACATCGTTCATTCCTCTCAAA | 58.359 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
1454 | 6011 | 4.271696 | ACACATCGTTCATTCCTCTCAA | 57.728 | 40.909 | 0.00 | 0.00 | 0.00 | 3.02 |
1455 | 6012 | 3.961480 | ACACATCGTTCATTCCTCTCA | 57.039 | 42.857 | 0.00 | 0.00 | 0.00 | 3.27 |
1456 | 6013 | 6.147164 | TGTTAAACACATCGTTCATTCCTCTC | 59.853 | 38.462 | 0.00 | 0.00 | 36.59 | 3.20 |
1457 | 6014 | 5.995282 | TGTTAAACACATCGTTCATTCCTCT | 59.005 | 36.000 | 0.00 | 0.00 | 36.59 | 3.69 |
1458 | 6015 | 6.236017 | TGTTAAACACATCGTTCATTCCTC | 57.764 | 37.500 | 0.00 | 0.00 | 36.59 | 3.71 |
1459 | 6016 | 6.206634 | ACATGTTAAACACATCGTTCATTCCT | 59.793 | 34.615 | 0.00 | 0.00 | 43.17 | 3.36 |
1460 | 6017 | 6.378582 | ACATGTTAAACACATCGTTCATTCC | 58.621 | 36.000 | 0.00 | 0.00 | 43.17 | 3.01 |
1461 | 6018 | 8.998989 | CATACATGTTAAACACATCGTTCATTC | 58.001 | 33.333 | 2.30 | 0.00 | 43.17 | 2.67 |
1462 | 6019 | 7.967854 | CCATACATGTTAAACACATCGTTCATT | 59.032 | 33.333 | 2.30 | 0.00 | 43.17 | 2.57 |
1463 | 6020 | 7.120579 | ACCATACATGTTAAACACATCGTTCAT | 59.879 | 33.333 | 2.30 | 0.00 | 43.17 | 2.57 |
1464 | 6021 | 6.428465 | ACCATACATGTTAAACACATCGTTCA | 59.572 | 34.615 | 2.30 | 0.00 | 43.17 | 3.18 |
1465 | 6022 | 6.837992 | ACCATACATGTTAAACACATCGTTC | 58.162 | 36.000 | 2.30 | 0.00 | 43.17 | 3.95 |
1466 | 6023 | 6.811253 | ACCATACATGTTAAACACATCGTT | 57.189 | 33.333 | 2.30 | 0.00 | 43.17 | 3.85 |
1467 | 6024 | 7.324935 | TCTACCATACATGTTAAACACATCGT | 58.675 | 34.615 | 2.30 | 0.00 | 43.17 | 3.73 |
1468 | 6025 | 7.764695 | TCTACCATACATGTTAAACACATCG | 57.235 | 36.000 | 2.30 | 0.00 | 43.17 | 3.84 |
1622 | 6210 | 1.514003 | TTTACGCGAGGATTTGTGCA | 58.486 | 45.000 | 15.93 | 0.00 | 0.00 | 4.57 |
1632 | 6220 | 2.823196 | TGCCATTGATTTTACGCGAG | 57.177 | 45.000 | 15.93 | 0.00 | 0.00 | 5.03 |
1635 | 6223 | 5.762045 | AGTCATATGCCATTGATTTTACGC | 58.238 | 37.500 | 0.00 | 0.00 | 0.00 | 4.42 |
1657 | 6245 | 5.368145 | TGCCCTAAGTATTGCACATCTAAG | 58.632 | 41.667 | 0.00 | 0.00 | 0.00 | 2.18 |
1790 | 6382 | 9.725206 | ACTCTTATATTTCTTTACAGAGGGGTA | 57.275 | 33.333 | 0.00 | 0.00 | 32.21 | 3.69 |
1791 | 6383 | 8.487028 | CACTCTTATATTTCTTTACAGAGGGGT | 58.513 | 37.037 | 0.00 | 0.00 | 32.21 | 4.95 |
1792 | 6384 | 8.487028 | ACACTCTTATATTTCTTTACAGAGGGG | 58.513 | 37.037 | 0.00 | 0.00 | 35.07 | 4.79 |
1793 | 6385 | 9.892130 | AACACTCTTATATTTCTTTACAGAGGG | 57.108 | 33.333 | 0.00 | 0.00 | 36.55 | 4.30 |
1854 | 6446 | 7.976135 | AGAGATTCCAATATGAACTACATGC | 57.024 | 36.000 | 0.00 | 0.00 | 39.77 | 4.06 |
2036 | 7918 | 1.309950 | ATCGAGACGTCCGTGATGAT | 58.690 | 50.000 | 20.62 | 9.97 | 0.00 | 2.45 |
2062 | 7944 | 4.520874 | TGTTTCAATGGAGGCGATGTTTAA | 59.479 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
2301 | 8186 | 4.826616 | TGGTCATATGAATGGAGGGAGTA | 58.173 | 43.478 | 7.07 | 0.00 | 33.61 | 2.59 |
2302 | 8187 | 3.649981 | CTGGTCATATGAATGGAGGGAGT | 59.350 | 47.826 | 7.07 | 0.00 | 33.61 | 3.85 |
2318 | 8203 | 5.923733 | TTTTCCTTTAGCAAAACTGGTCA | 57.076 | 34.783 | 0.00 | 0.00 | 0.00 | 4.02 |
2319 | 8204 | 6.280643 | ACATTTTCCTTTAGCAAAACTGGTC | 58.719 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2320 | 8205 | 6.233905 | ACATTTTCCTTTAGCAAAACTGGT | 57.766 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
2321 | 8206 | 7.206687 | TGTACATTTTCCTTTAGCAAAACTGG | 58.793 | 34.615 | 0.00 | 0.00 | 0.00 | 4.00 |
2369 | 8260 | 8.594550 | ACATTAAAACGCCTCTATATACATCCT | 58.405 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
2371 | 8262 | 9.204570 | ACACATTAAAACGCCTCTATATACATC | 57.795 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2382 | 8273 | 4.801516 | GTGAACAAACACATTAAAACGCCT | 59.198 | 37.500 | 0.00 | 0.00 | 40.11 | 5.52 |
2384 | 8275 | 5.513495 | TGAGTGAACAAACACATTAAAACGC | 59.487 | 36.000 | 0.00 | 0.00 | 42.45 | 4.84 |
2390 | 8281 | 9.944663 | GACTAAAATGAGTGAACAAACACATTA | 57.055 | 29.630 | 0.00 | 0.00 | 39.46 | 1.90 |
2391 | 8282 | 8.686334 | AGACTAAAATGAGTGAACAAACACATT | 58.314 | 29.630 | 0.00 | 0.00 | 41.29 | 2.71 |
2442 | 8333 | 9.941991 | CGACAGCATTTTGTAGAAAATATTTTG | 57.058 | 29.630 | 17.98 | 8.69 | 39.34 | 2.44 |
2456 | 8347 | 7.798516 | GGTGTACATATTATCGACAGCATTTTG | 59.201 | 37.037 | 0.00 | 0.00 | 38.18 | 2.44 |
2457 | 8348 | 7.041372 | GGGTGTACATATTATCGACAGCATTTT | 60.041 | 37.037 | 0.00 | 0.00 | 39.64 | 1.82 |
2458 | 8349 | 6.426937 | GGGTGTACATATTATCGACAGCATTT | 59.573 | 38.462 | 0.00 | 0.00 | 39.64 | 2.32 |
2460 | 8351 | 5.246203 | AGGGTGTACATATTATCGACAGCAT | 59.754 | 40.000 | 0.00 | 7.86 | 39.64 | 3.79 |
2461 | 8352 | 4.587262 | AGGGTGTACATATTATCGACAGCA | 59.413 | 41.667 | 0.00 | 0.00 | 39.64 | 4.41 |
2462 | 8353 | 5.047943 | AGAGGGTGTACATATTATCGACAGC | 60.048 | 44.000 | 0.00 | 7.62 | 37.70 | 4.40 |
2463 | 8354 | 6.576662 | AGAGGGTGTACATATTATCGACAG | 57.423 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2465 | 8356 | 8.508883 | AGATAGAGGGTGTACATATTATCGAC | 57.491 | 38.462 | 0.00 | 0.00 | 0.00 | 4.20 |
2474 | 8365 | 9.656323 | TCTTACATTTAGATAGAGGGTGTACAT | 57.344 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2475 | 8366 | 8.910944 | GTCTTACATTTAGATAGAGGGTGTACA | 58.089 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
2476 | 8367 | 8.074972 | CGTCTTACATTTAGATAGAGGGTGTAC | 58.925 | 40.741 | 0.00 | 0.00 | 0.00 | 2.90 |
2478 | 8369 | 6.606395 | ACGTCTTACATTTAGATAGAGGGTGT | 59.394 | 38.462 | 0.00 | 0.00 | 0.00 | 4.16 |
2479 | 8370 | 7.040473 | ACGTCTTACATTTAGATAGAGGGTG | 57.960 | 40.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2480 | 8371 | 7.560626 | AGAACGTCTTACATTTAGATAGAGGGT | 59.439 | 37.037 | 0.00 | 0.00 | 0.00 | 4.34 |
2481 | 8372 | 7.942990 | AGAACGTCTTACATTTAGATAGAGGG | 58.057 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
2483 | 8374 | 8.747666 | GCAAGAACGTCTTACATTTAGATAGAG | 58.252 | 37.037 | 0.00 | 0.00 | 33.78 | 2.43 |
2502 | 8439 | 9.636965 | GTTTCATTCAAATTAAACTGCAAGAAC | 57.363 | 29.630 | 5.63 | 0.00 | 37.43 | 3.01 |
2505 | 8442 | 7.840489 | ACGTTTCATTCAAATTAAACTGCAAG | 58.160 | 30.769 | 9.58 | 0.00 | 42.29 | 4.01 |
2529 | 8466 | 7.328982 | GTGCTACTACCTCTTCTGTTTCTAAAC | 59.671 | 40.741 | 0.00 | 0.00 | 39.33 | 2.01 |
2589 | 10047 | 2.202810 | GTCAGCTCCTGCGGCTAC | 60.203 | 66.667 | 0.00 | 0.00 | 45.42 | 3.58 |
2617 | 10080 | 9.010029 | GTCATTTTCCTTTTCTGGACTATACAA | 57.990 | 33.333 | 0.00 | 0.00 | 35.58 | 2.41 |
2618 | 10081 | 7.333423 | CGTCATTTTCCTTTTCTGGACTATACA | 59.667 | 37.037 | 0.00 | 0.00 | 35.58 | 2.29 |
2619 | 10082 | 7.333672 | ACGTCATTTTCCTTTTCTGGACTATAC | 59.666 | 37.037 | 0.00 | 0.00 | 35.58 | 1.47 |
2620 | 10083 | 7.391620 | ACGTCATTTTCCTTTTCTGGACTATA | 58.608 | 34.615 | 0.00 | 0.00 | 35.58 | 1.31 |
2621 | 10084 | 6.238648 | ACGTCATTTTCCTTTTCTGGACTAT | 58.761 | 36.000 | 0.00 | 0.00 | 35.58 | 2.12 |
2782 | 10521 | 1.468985 | CTCTCTGTGATCACCGGTCT | 58.531 | 55.000 | 22.85 | 0.00 | 0.00 | 3.85 |
2785 | 10524 | 1.226802 | CGCTCTCTGTGATCACCGG | 60.227 | 63.158 | 22.85 | 15.17 | 0.00 | 5.28 |
2787 | 10526 | 0.749649 | ATCCGCTCTCTGTGATCACC | 59.250 | 55.000 | 22.85 | 5.48 | 0.00 | 4.02 |
2788 | 10527 | 2.593346 | AATCCGCTCTCTGTGATCAC | 57.407 | 50.000 | 19.27 | 19.27 | 0.00 | 3.06 |
2789 | 10528 | 4.148079 | AGATAATCCGCTCTCTGTGATCA | 58.852 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
2790 | 10529 | 4.782019 | AGATAATCCGCTCTCTGTGATC | 57.218 | 45.455 | 0.00 | 0.00 | 0.00 | 2.92 |
2791 | 10530 | 4.461081 | GGTAGATAATCCGCTCTCTGTGAT | 59.539 | 45.833 | 0.00 | 0.00 | 0.00 | 3.06 |
2792 | 10531 | 3.821600 | GGTAGATAATCCGCTCTCTGTGA | 59.178 | 47.826 | 0.00 | 0.00 | 0.00 | 3.58 |
2794 | 10533 | 2.814919 | CGGTAGATAATCCGCTCTCTGT | 59.185 | 50.000 | 0.00 | 0.00 | 40.28 | 3.41 |
2858 | 10599 | 5.120674 | TCAGACACGCTTTCAAGAATACATG | 59.879 | 40.000 | 0.00 | 0.00 | 0.00 | 3.21 |
2902 | 10644 | 8.269317 | AGATAGGCTGATATGTAGAGTAGGTAC | 58.731 | 40.741 | 0.00 | 0.00 | 0.00 | 3.34 |
2915 | 10662 | 5.914452 | AGGAGAAAGGAGATAGGCTGATAT | 58.086 | 41.667 | 0.00 | 0.00 | 0.00 | 1.63 |
3060 | 10807 | 8.259049 | TCACTAAAATATTTTCGTGTCCGATT | 57.741 | 30.769 | 29.77 | 5.89 | 43.80 | 3.34 |
3149 | 10897 | 8.682936 | AGAACATTCTCAAATATATTTCGGCT | 57.317 | 30.769 | 7.76 | 0.00 | 29.94 | 5.52 |
3163 | 10911 | 5.299279 | GGACTTCCAAACAAGAACATTCTCA | 59.701 | 40.000 | 0.00 | 0.00 | 34.30 | 3.27 |
3281 | 11030 | 5.366477 | TCATGTCTTGCTTCACTCCCATATA | 59.634 | 40.000 | 0.00 | 0.00 | 0.00 | 0.86 |
3320 | 11075 | 6.994421 | TTACTATGCTTCATCCACCAGATA | 57.006 | 37.500 | 0.00 | 0.00 | 32.37 | 1.98 |
3374 | 11172 | 9.812347 | TTTATTATTATGCTTCATCCACCAGAT | 57.188 | 29.630 | 0.00 | 0.00 | 34.66 | 2.90 |
3375 | 11173 | 9.812347 | ATTTATTATTATGCTTCATCCACCAGA | 57.188 | 29.630 | 0.00 | 0.00 | 0.00 | 3.86 |
3376 | 11174 | 9.850628 | CATTTATTATTATGCTTCATCCACCAG | 57.149 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
3377 | 11175 | 8.805175 | CCATTTATTATTATGCTTCATCCACCA | 58.195 | 33.333 | 0.00 | 0.00 | 0.00 | 4.17 |
3378 | 11176 | 8.806146 | ACCATTTATTATTATGCTTCATCCACC | 58.194 | 33.333 | 0.00 | 0.00 | 0.00 | 4.61 |
3388 | 11186 | 9.964303 | TGTCACATCAACCATTTATTATTATGC | 57.036 | 29.630 | 0.00 | 0.00 | 0.00 | 3.14 |
3393 | 11191 | 9.241919 | TGTCTTGTCACATCAACCATTTATTAT | 57.758 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
3394 | 11192 | 8.511321 | GTGTCTTGTCACATCAACCATTTATTA | 58.489 | 33.333 | 0.00 | 0.00 | 38.12 | 0.98 |
3395 | 11193 | 7.014134 | TGTGTCTTGTCACATCAACCATTTATT | 59.986 | 33.333 | 0.00 | 0.00 | 42.36 | 1.40 |
3396 | 11194 | 6.489700 | TGTGTCTTGTCACATCAACCATTTAT | 59.510 | 34.615 | 0.00 | 0.00 | 42.36 | 1.40 |
3397 | 11195 | 5.825151 | TGTGTCTTGTCACATCAACCATTTA | 59.175 | 36.000 | 0.00 | 0.00 | 42.36 | 1.40 |
3398 | 11196 | 4.644234 | TGTGTCTTGTCACATCAACCATTT | 59.356 | 37.500 | 0.00 | 0.00 | 42.36 | 2.32 |
3399 | 11197 | 4.206375 | TGTGTCTTGTCACATCAACCATT | 58.794 | 39.130 | 0.00 | 0.00 | 42.36 | 3.16 |
3400 | 11198 | 3.819368 | TGTGTCTTGTCACATCAACCAT | 58.181 | 40.909 | 0.00 | 0.00 | 42.36 | 3.55 |
3401 | 11199 | 3.274095 | TGTGTCTTGTCACATCAACCA | 57.726 | 42.857 | 0.00 | 0.00 | 42.36 | 3.67 |
3402 | 11200 | 3.876914 | TCTTGTGTCTTGTCACATCAACC | 59.123 | 43.478 | 2.02 | 0.00 | 45.73 | 3.77 |
3403 | 11201 | 4.572389 | ACTCTTGTGTCTTGTCACATCAAC | 59.428 | 41.667 | 2.02 | 0.00 | 45.73 | 3.18 |
3404 | 11202 | 4.769688 | ACTCTTGTGTCTTGTCACATCAA | 58.230 | 39.130 | 2.02 | 0.00 | 45.73 | 2.57 |
3405 | 11203 | 4.406648 | ACTCTTGTGTCTTGTCACATCA | 57.593 | 40.909 | 2.02 | 0.00 | 45.73 | 3.07 |
3406 | 11204 | 5.533482 | ACTACTCTTGTGTCTTGTCACATC | 58.467 | 41.667 | 2.02 | 0.00 | 45.73 | 3.06 |
3407 | 11205 | 5.537300 | ACTACTCTTGTGTCTTGTCACAT | 57.463 | 39.130 | 2.02 | 0.00 | 45.73 | 3.21 |
3408 | 11206 | 5.826208 | TCTACTACTCTTGTGTCTTGTCACA | 59.174 | 40.000 | 0.00 | 0.00 | 44.96 | 3.58 |
3409 | 11207 | 6.315091 | TCTACTACTCTTGTGTCTTGTCAC | 57.685 | 41.667 | 0.00 | 0.00 | 38.63 | 3.67 |
3410 | 11208 | 6.954487 | TTCTACTACTCTTGTGTCTTGTCA | 57.046 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
3411 | 11209 | 9.509855 | CATATTCTACTACTCTTGTGTCTTGTC | 57.490 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
3412 | 11210 | 8.470805 | CCATATTCTACTACTCTTGTGTCTTGT | 58.529 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
3413 | 11211 | 8.687242 | TCCATATTCTACTACTCTTGTGTCTTG | 58.313 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
3414 | 11212 | 8.824756 | TCCATATTCTACTACTCTTGTGTCTT | 57.175 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
3415 | 11213 | 8.275758 | TCTCCATATTCTACTACTCTTGTGTCT | 58.724 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
3416 | 11214 | 8.453238 | TCTCCATATTCTACTACTCTTGTGTC | 57.547 | 38.462 | 0.00 | 0.00 | 0.00 | 3.67 |
3417 | 11215 | 8.824756 | TTCTCCATATTCTACTACTCTTGTGT | 57.175 | 34.615 | 0.00 | 0.00 | 0.00 | 3.72 |
3421 | 11219 | 9.815306 | TGCTATTCTCCATATTCTACTACTCTT | 57.185 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
3422 | 11220 | 9.815306 | TTGCTATTCTCCATATTCTACTACTCT | 57.185 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
3450 | 11248 | 8.512138 | GGTGTAACTCTTTGTATGTTTAGCATT | 58.488 | 33.333 | 0.00 | 0.00 | 36.58 | 3.56 |
3451 | 11249 | 7.120726 | GGGTGTAACTCTTTGTATGTTTAGCAT | 59.879 | 37.037 | 0.00 | 0.00 | 36.49 | 3.79 |
3452 | 11250 | 6.428771 | GGGTGTAACTCTTTGTATGTTTAGCA | 59.571 | 38.462 | 0.00 | 0.00 | 31.43 | 3.49 |
3453 | 11251 | 6.428771 | TGGGTGTAACTCTTTGTATGTTTAGC | 59.571 | 38.462 | 0.00 | 0.00 | 38.97 | 3.09 |
3454 | 11252 | 7.972832 | TGGGTGTAACTCTTTGTATGTTTAG | 57.027 | 36.000 | 0.00 | 0.00 | 38.97 | 1.85 |
3455 | 11253 | 8.927675 | ATTGGGTGTAACTCTTTGTATGTTTA | 57.072 | 30.769 | 0.00 | 0.00 | 38.97 | 2.01 |
3456 | 11254 | 7.833285 | ATTGGGTGTAACTCTTTGTATGTTT | 57.167 | 32.000 | 0.00 | 0.00 | 38.97 | 2.83 |
3457 | 11255 | 7.833285 | AATTGGGTGTAACTCTTTGTATGTT | 57.167 | 32.000 | 0.00 | 0.00 | 38.97 | 2.71 |
3458 | 11256 | 7.940137 | TGTAATTGGGTGTAACTCTTTGTATGT | 59.060 | 33.333 | 0.00 | 0.00 | 38.97 | 2.29 |
3459 | 11257 | 8.234546 | GTGTAATTGGGTGTAACTCTTTGTATG | 58.765 | 37.037 | 0.00 | 0.00 | 38.97 | 2.39 |
3460 | 11258 | 7.118680 | CGTGTAATTGGGTGTAACTCTTTGTAT | 59.881 | 37.037 | 0.00 | 0.00 | 38.97 | 2.29 |
3461 | 11259 | 6.424509 | CGTGTAATTGGGTGTAACTCTTTGTA | 59.575 | 38.462 | 0.00 | 0.00 | 38.97 | 2.41 |
3462 | 11260 | 5.237779 | CGTGTAATTGGGTGTAACTCTTTGT | 59.762 | 40.000 | 0.00 | 0.00 | 38.97 | 2.83 |
3463 | 11261 | 5.685841 | CGTGTAATTGGGTGTAACTCTTTG | 58.314 | 41.667 | 0.00 | 0.00 | 38.97 | 2.77 |
3464 | 11262 | 4.214758 | GCGTGTAATTGGGTGTAACTCTTT | 59.785 | 41.667 | 0.00 | 0.00 | 38.97 | 2.52 |
3465 | 11263 | 3.749609 | GCGTGTAATTGGGTGTAACTCTT | 59.250 | 43.478 | 0.00 | 0.00 | 38.97 | 2.85 |
3466 | 11264 | 3.007614 | AGCGTGTAATTGGGTGTAACTCT | 59.992 | 43.478 | 0.00 | 0.00 | 38.97 | 3.24 |
3467 | 11265 | 3.124636 | CAGCGTGTAATTGGGTGTAACTC | 59.875 | 47.826 | 0.00 | 0.00 | 38.34 | 3.01 |
3468 | 11266 | 3.071479 | CAGCGTGTAATTGGGTGTAACT | 58.929 | 45.455 | 0.00 | 0.00 | 36.74 | 2.24 |
3469 | 11267 | 3.068560 | TCAGCGTGTAATTGGGTGTAAC | 58.931 | 45.455 | 0.00 | 0.00 | 0.00 | 2.50 |
3470 | 11268 | 3.068560 | GTCAGCGTGTAATTGGGTGTAA | 58.931 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
3471 | 11269 | 2.300723 | AGTCAGCGTGTAATTGGGTGTA | 59.699 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
3472 | 11270 | 1.071699 | AGTCAGCGTGTAATTGGGTGT | 59.928 | 47.619 | 0.00 | 0.00 | 0.00 | 4.16 |
3473 | 11271 | 1.808411 | AGTCAGCGTGTAATTGGGTG | 58.192 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
3474 | 11272 | 2.093658 | CCTAGTCAGCGTGTAATTGGGT | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
3475 | 11273 | 2.167693 | TCCTAGTCAGCGTGTAATTGGG | 59.832 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
3476 | 11274 | 3.520290 | TCCTAGTCAGCGTGTAATTGG | 57.480 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
3477 | 11275 | 6.422776 | AAAATCCTAGTCAGCGTGTAATTG | 57.577 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
3828 | 11626 | 9.961264 | AAGGTTTTACAAAAAGGGTTAATTTGA | 57.039 | 25.926 | 5.68 | 0.00 | 37.46 | 2.69 |
3829 | 11627 | 9.995957 | CAAGGTTTTACAAAAAGGGTTAATTTG | 57.004 | 29.630 | 0.00 | 0.00 | 39.38 | 2.32 |
3830 | 11628 | 9.742144 | ACAAGGTTTTACAAAAAGGGTTAATTT | 57.258 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
3833 | 11631 | 9.650539 | GTTACAAGGTTTTACAAAAAGGGTTAA | 57.349 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
3834 | 11632 | 9.033711 | AGTTACAAGGTTTTACAAAAAGGGTTA | 57.966 | 29.630 | 0.00 | 0.00 | 0.00 | 2.85 |
3835 | 11633 | 7.909518 | AGTTACAAGGTTTTACAAAAAGGGTT | 58.090 | 30.769 | 0.00 | 0.00 | 0.00 | 4.11 |
3836 | 11634 | 7.484993 | AGTTACAAGGTTTTACAAAAAGGGT | 57.515 | 32.000 | 0.00 | 0.00 | 0.00 | 4.34 |
3837 | 11635 | 6.693978 | CGAGTTACAAGGTTTTACAAAAAGGG | 59.306 | 38.462 | 0.00 | 0.00 | 0.00 | 3.95 |
3838 | 11636 | 7.252708 | ACGAGTTACAAGGTTTTACAAAAAGG | 58.747 | 34.615 | 0.00 | 0.00 | 0.00 | 3.11 |
3839 | 11637 | 8.677871 | AACGAGTTACAAGGTTTTACAAAAAG | 57.322 | 30.769 | 0.00 | 0.00 | 0.00 | 2.27 |
3840 | 11638 | 8.913656 | CAAACGAGTTACAAGGTTTTACAAAAA | 58.086 | 29.630 | 0.00 | 0.00 | 30.73 | 1.94 |
3841 | 11639 | 8.081025 | ACAAACGAGTTACAAGGTTTTACAAAA | 58.919 | 29.630 | 0.00 | 0.00 | 30.73 | 2.44 |
3842 | 11640 | 7.592051 | ACAAACGAGTTACAAGGTTTTACAAA | 58.408 | 30.769 | 0.00 | 0.00 | 30.73 | 2.83 |
3843 | 11641 | 7.143514 | ACAAACGAGTTACAAGGTTTTACAA | 57.856 | 32.000 | 0.00 | 0.00 | 30.73 | 2.41 |
3844 | 11642 | 6.740411 | ACAAACGAGTTACAAGGTTTTACA | 57.260 | 33.333 | 0.00 | 0.00 | 30.73 | 2.41 |
3862 | 11660 | 4.030977 | CCGAGTAATGCTACACGTACAAAC | 59.969 | 45.833 | 0.00 | 0.00 | 39.57 | 2.93 |
3863 | 11661 | 4.082841 | TCCGAGTAATGCTACACGTACAAA | 60.083 | 41.667 | 0.00 | 0.00 | 39.57 | 2.83 |
3864 | 11662 | 3.439825 | TCCGAGTAATGCTACACGTACAA | 59.560 | 43.478 | 0.00 | 0.00 | 39.57 | 2.41 |
3865 | 11663 | 3.009026 | TCCGAGTAATGCTACACGTACA | 58.991 | 45.455 | 0.00 | 0.00 | 39.57 | 2.90 |
3866 | 11664 | 3.547613 | CCTCCGAGTAATGCTACACGTAC | 60.548 | 52.174 | 0.00 | 0.00 | 39.57 | 3.67 |
3867 | 11665 | 2.615447 | CCTCCGAGTAATGCTACACGTA | 59.385 | 50.000 | 0.00 | 0.00 | 39.57 | 3.57 |
3868 | 11666 | 1.404391 | CCTCCGAGTAATGCTACACGT | 59.596 | 52.381 | 0.00 | 0.00 | 39.57 | 4.49 |
3869 | 11667 | 1.674441 | TCCTCCGAGTAATGCTACACG | 59.326 | 52.381 | 0.00 | 0.00 | 40.50 | 4.49 |
3870 | 11668 | 3.795623 | TTCCTCCGAGTAATGCTACAC | 57.204 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
3871 | 11669 | 5.382616 | TCTATTCCTCCGAGTAATGCTACA | 58.617 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
3872 | 11670 | 5.961396 | TCTATTCCTCCGAGTAATGCTAC | 57.039 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
3873 | 11671 | 5.105716 | GCATCTATTCCTCCGAGTAATGCTA | 60.106 | 44.000 | 0.00 | 0.00 | 35.35 | 3.49 |
3874 | 11672 | 4.322349 | GCATCTATTCCTCCGAGTAATGCT | 60.322 | 45.833 | 0.00 | 0.00 | 35.35 | 3.79 |
3875 | 11673 | 3.929610 | GCATCTATTCCTCCGAGTAATGC | 59.070 | 47.826 | 0.00 | 0.00 | 0.00 | 3.56 |
3876 | 11674 | 5.139435 | TGCATCTATTCCTCCGAGTAATG | 57.861 | 43.478 | 0.00 | 0.00 | 0.00 | 1.90 |
3877 | 11675 | 5.808366 | TTGCATCTATTCCTCCGAGTAAT | 57.192 | 39.130 | 0.00 | 0.00 | 0.00 | 1.89 |
3878 | 11676 | 5.808366 | ATTGCATCTATTCCTCCGAGTAA | 57.192 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
3879 | 11677 | 5.304357 | TCAATTGCATCTATTCCTCCGAGTA | 59.696 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
3880 | 11678 | 4.101585 | TCAATTGCATCTATTCCTCCGAGT | 59.898 | 41.667 | 0.00 | 0.00 | 0.00 | 4.18 |
3881 | 11679 | 4.635223 | TCAATTGCATCTATTCCTCCGAG | 58.365 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
3882 | 11680 | 4.687901 | TCAATTGCATCTATTCCTCCGA | 57.312 | 40.909 | 0.00 | 0.00 | 0.00 | 4.55 |
3883 | 11681 | 5.954296 | ATTCAATTGCATCTATTCCTCCG | 57.046 | 39.130 | 0.00 | 0.00 | 0.00 | 4.63 |
3884 | 11682 | 7.040201 | TGCTTATTCAATTGCATCTATTCCTCC | 60.040 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
3885 | 11683 | 7.879070 | TGCTTATTCAATTGCATCTATTCCTC | 58.121 | 34.615 | 0.00 | 0.00 | 0.00 | 3.71 |
3916 | 11714 | 1.908619 | TGGGCTGCTCTAGTTTCATGA | 59.091 | 47.619 | 0.00 | 0.00 | 0.00 | 3.07 |
3917 | 11715 | 2.093288 | TCTGGGCTGCTCTAGTTTCATG | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
3933 | 11731 | 0.591659 | CGAATGCATGCAGATCTGGG | 59.408 | 55.000 | 26.69 | 10.23 | 0.00 | 4.45 |
3959 | 11757 | 2.591571 | GCCAAGCCATCCATTTCTTC | 57.408 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
3976 | 11774 | 1.134280 | CGAGATATCCCATGGATGGCC | 60.134 | 57.143 | 15.22 | 0.00 | 46.70 | 5.36 |
3982 | 11780 | 4.128925 | CCATGTACGAGATATCCCATGG | 57.871 | 50.000 | 4.14 | 4.14 | 42.21 | 3.66 |
3985 | 11783 | 5.251182 | TCTACCATGTACGAGATATCCCA | 57.749 | 43.478 | 0.00 | 0.00 | 0.00 | 4.37 |
3994 | 11792 | 6.873997 | AGAAATGATGTTCTACCATGTACGA | 58.126 | 36.000 | 0.00 | 0.00 | 36.06 | 3.43 |
3998 | 11796 | 5.118990 | CCGAGAAATGATGTTCTACCATGT | 58.881 | 41.667 | 0.00 | 0.00 | 37.98 | 3.21 |
4031 | 11829 | 7.333528 | TCCTGTATTTGTATTTTGGATCAGC | 57.666 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
4051 | 11849 | 5.437289 | TGACAACAAAAATACTGCTCCTG | 57.563 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
4090 | 11889 | 2.008697 | CCGCCGTTTGCACTTTTCG | 61.009 | 57.895 | 0.00 | 0.00 | 41.33 | 3.46 |
4104 | 11903 | 3.296322 | TCACATTTGATTTTGACCGCC | 57.704 | 42.857 | 0.00 | 0.00 | 0.00 | 6.13 |
4120 | 11919 | 0.737804 | AACGCACACTGCAAATCACA | 59.262 | 45.000 | 0.00 | 0.00 | 45.36 | 3.58 |
4121 | 11920 | 1.122849 | CAACGCACACTGCAAATCAC | 58.877 | 50.000 | 0.00 | 0.00 | 45.36 | 3.06 |
4122 | 11921 | 1.002576 | CTCAACGCACACTGCAAATCA | 60.003 | 47.619 | 0.00 | 0.00 | 45.36 | 2.57 |
4123 | 11922 | 1.002468 | ACTCAACGCACACTGCAAATC | 60.002 | 47.619 | 0.00 | 0.00 | 45.36 | 2.17 |
4124 | 11923 | 1.024271 | ACTCAACGCACACTGCAAAT | 58.976 | 45.000 | 0.00 | 0.00 | 45.36 | 2.32 |
4125 | 11924 | 1.657822 | TACTCAACGCACACTGCAAA | 58.342 | 45.000 | 0.00 | 0.00 | 45.36 | 3.68 |
4272 | 12085 | 2.738521 | CTGGCCTGGTCGTCGTTG | 60.739 | 66.667 | 3.32 | 0.00 | 0.00 | 4.10 |
4294 | 12107 | 2.205074 | GATCTTGCGGTGTATGGAGTG | 58.795 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
4445 | 12258 | 1.666553 | TCGAACACCACCGTCATGC | 60.667 | 57.895 | 0.00 | 0.00 | 0.00 | 4.06 |
5107 | 12920 | 3.490759 | CATGGAGCGCGCGAACTT | 61.491 | 61.111 | 37.18 | 17.03 | 0.00 | 2.66 |
5433 | 13246 | 1.135915 | CTCATCGACCAAGTAGCAGCT | 59.864 | 52.381 | 0.00 | 0.00 | 0.00 | 4.24 |
5479 | 13296 | 1.225855 | TGTTCCATGTCGCACTTCAC | 58.774 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5511 | 13329 | 4.634883 | GGAGATGCTCTTACGGACGATATA | 59.365 | 45.833 | 0.00 | 0.00 | 0.00 | 0.86 |
5516 | 13334 | 0.738975 | TGGAGATGCTCTTACGGACG | 59.261 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5517 | 13335 | 2.961526 | TTGGAGATGCTCTTACGGAC | 57.038 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5518 | 13336 | 4.220821 | GGATATTGGAGATGCTCTTACGGA | 59.779 | 45.833 | 0.00 | 0.00 | 0.00 | 4.69 |
5519 | 13337 | 4.499183 | GGATATTGGAGATGCTCTTACGG | 58.501 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
5520 | 13338 | 4.169508 | CGGATATTGGAGATGCTCTTACG | 58.830 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
5565 | 13383 | 2.653130 | GATGCGCCGCAAATGAGC | 60.653 | 61.111 | 18.69 | 0.00 | 43.62 | 4.26 |
5575 | 13393 | 2.892425 | CCAGACGAAGGATGCGCC | 60.892 | 66.667 | 4.18 | 0.00 | 45.20 | 6.53 |
5580 | 13398 | 0.673644 | CGCCAAACCAGACGAAGGAT | 60.674 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
5618 | 13436 | 1.305219 | AATTTTAGCGCGGCTGCTGA | 61.305 | 50.000 | 22.96 | 15.42 | 46.70 | 4.26 |
6044 | 13904 | 0.321671 | CAACGAGGAAGCCTTCTGGA | 59.678 | 55.000 | 4.15 | 0.00 | 31.76 | 3.86 |
6224 | 14085 | 3.626670 | CCAGCAGATGAACTTTCAGGATC | 59.373 | 47.826 | 0.00 | 0.00 | 41.08 | 3.36 |
6231 | 14092 | 1.878775 | GCGCCAGCAGATGAACTTT | 59.121 | 52.632 | 0.00 | 0.00 | 44.35 | 2.66 |
6347 | 14208 | 4.208686 | GCTGGTACTCCGCCGAGG | 62.209 | 72.222 | 7.01 | 0.00 | 40.77 | 4.63 |

Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.