Multiple sequence alignment - TraesCS5D01G267200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G267200 chr5D 100.000 5929 0 0 1 5929 370951183 370945255 0.000000e+00 10949.0
1 TraesCS5D01G267200 chr5A 95.667 3416 110 18 708 4096 473641829 473638425 0.000000e+00 5454.0
2 TraesCS5D01G267200 chr5A 95.565 699 19 5 4165 4859 473638261 473637571 0.000000e+00 1109.0
3 TraesCS5D01G267200 chr5A 84.293 382 50 5 1 375 473642467 473642089 1.210000e-96 364.0
4 TraesCS5D01G267200 chr5A 88.835 206 22 1 5277 5482 450561344 450561140 9.860000e-63 252.0
5 TraesCS5D01G267200 chr5A 86.364 198 26 1 5727 5923 358482686 358482883 1.290000e-51 215.0
6 TraesCS5D01G267200 chr5A 96.386 83 3 0 4094 4176 473638386 473638304 2.880000e-28 137.0
7 TraesCS5D01G267200 chr5A 87.129 101 13 0 5007 5107 473637491 473637391 1.350000e-21 115.0
8 TraesCS5D01G267200 chr5A 93.846 65 4 0 654 718 473642089 473642025 1.360000e-16 99.0
9 TraesCS5D01G267200 chr5A 100.000 32 0 0 5682 5713 366123388 366123357 6.420000e-05 60.2
10 TraesCS5D01G267200 chr5B 95.626 3361 97 18 768 4096 440279286 440275944 0.000000e+00 5347.0
11 TraesCS5D01G267200 chr5B 92.522 682 41 3 4165 4840 440275716 440275039 0.000000e+00 968.0
12 TraesCS5D01G267200 chr5B 78.766 551 72 20 5392 5926 97513015 97513536 1.590000e-85 327.0
13 TraesCS5D01G267200 chr5B 81.766 351 39 16 377 707 440279927 440279582 2.720000e-68 270.0
14 TraesCS5D01G267200 chr5B 89.552 201 16 4 5281 5478 570861123 570861321 3.550000e-62 250.0
15 TraesCS5D01G267200 chr5B 98.718 78 1 0 4094 4171 440275841 440275764 8.010000e-29 139.0
16 TraesCS5D01G267200 chr5B 94.186 86 3 2 4904 4987 440275036 440274951 4.820000e-26 130.0
17 TraesCS5D01G267200 chr5B 93.023 86 5 1 5141 5225 629934766 629934851 2.240000e-24 124.0
18 TraesCS5D01G267200 chr5B 91.111 90 6 2 5134 5222 337903758 337903670 2.900000e-23 121.0
19 TraesCS5D01G267200 chr2A 86.925 956 81 20 2910 3857 727954740 727955659 0.000000e+00 1033.0
20 TraesCS5D01G267200 chr2A 89.465 579 52 4 2287 2856 727954065 727954643 0.000000e+00 723.0
21 TraesCS5D01G267200 chr2A 86.517 178 22 2 4714 4891 345161044 345161219 1.690000e-45 195.0
22 TraesCS5D01G267200 chr2A 85.955 178 23 2 4714 4891 344889448 344889623 7.840000e-44 189.0
23 TraesCS5D01G267200 chr2A 89.899 99 9 1 230 327 727948952 727949050 6.240000e-25 126.0
24 TraesCS5D01G267200 chr2B 85.495 848 70 28 3103 3941 719469855 719470658 0.000000e+00 835.0
25 TraesCS5D01G267200 chr2B 89.300 486 46 5 2287 2766 719468763 719469248 6.570000e-169 604.0
26 TraesCS5D01G267200 chr2B 81.289 481 41 28 4282 4761 719470844 719471276 1.580000e-90 344.0
27 TraesCS5D01G267200 chr2B 82.043 323 30 5 2915 3231 719469550 719469850 3.550000e-62 250.0
28 TraesCS5D01G267200 chr2B 86.567 134 16 1 4755 4888 784696013 784696144 4.790000e-31 147.0
29 TraesCS5D01G267200 chr2B 87.879 99 11 1 230 327 719462939 719463037 1.350000e-21 115.0
30 TraesCS5D01G267200 chr2B 88.372 86 6 1 4192 4273 719470666 719470751 3.780000e-17 100.0
31 TraesCS5D01G267200 chr2B 80.870 115 10 7 4371 4485 353590396 353590294 4.930000e-11 80.5
32 TraesCS5D01G267200 chr2B 88.889 63 7 0 5007 5069 784696197 784696259 1.770000e-10 78.7
33 TraesCS5D01G267200 chr2B 97.368 38 1 0 2192 2229 719468612 719468649 1.380000e-06 65.8
34 TraesCS5D01G267200 chr2D 85.419 823 71 29 3122 3941 593216139 593216915 0.000000e+00 809.0
35 TraesCS5D01G267200 chr2D 91.546 485 35 3 2287 2766 593215032 593215515 0.000000e+00 664.0
36 TraesCS5D01G267200 chr2D 82.453 530 41 20 4192 4716 593216923 593217405 3.310000e-112 416.0
37 TraesCS5D01G267200 chr2D 87.307 323 32 5 2915 3231 593215793 593216112 1.570000e-95 361.0
38 TraesCS5D01G267200 chr2D 85.714 252 30 4 5277 5524 131479970 131479721 1.640000e-65 261.0
39 TraesCS5D01G267200 chr2D 93.103 87 4 2 5141 5225 95418728 95418642 6.240000e-25 126.0
40 TraesCS5D01G267200 chr2D 89.899 99 9 1 230 327 593209114 593209212 6.240000e-25 126.0
41 TraesCS5D01G267200 chr2D 92.857 84 6 0 5139 5222 615394355 615394272 8.070000e-24 122.0
42 TraesCS5D01G267200 chr2D 79.720 143 14 9 4371 4513 295152079 295152206 8.180000e-14 89.8
43 TraesCS5D01G267200 chr2D 91.489 47 2 2 2192 2237 593214881 593214926 4.960000e-06 63.9
44 TraesCS5D01G267200 chr7D 83.508 667 66 12 5282 5929 586745114 586744473 3.080000e-162 582.0
45 TraesCS5D01G267200 chr7D 81.947 637 85 17 5318 5926 83754624 83753990 4.100000e-141 512.0
46 TraesCS5D01G267200 chr7D 87.550 249 26 5 5279 5524 6588240 6588486 3.500000e-72 283.0
47 TraesCS5D01G267200 chr7D 95.122 82 4 0 5141 5222 633878851 633878770 4.820000e-26 130.0
48 TraesCS5D01G267200 chr7D 92.941 85 6 0 5138 5222 16713334 16713250 2.240000e-24 124.0
49 TraesCS5D01G267200 chr6A 79.167 528 81 23 5279 5793 539185080 539184569 7.360000e-89 339.0
50 TraesCS5D01G267200 chr3D 79.901 403 64 12 5277 5676 415687787 415688175 4.520000e-71 279.0
51 TraesCS5D01G267200 chr3D 83.871 248 40 0 5682 5929 39592962 39593209 2.760000e-58 237.0
52 TraesCS5D01G267200 chr6B 85.830 247 32 3 5281 5526 96620435 96620191 5.890000e-65 259.0
53 TraesCS5D01G267200 chr7A 83.721 258 35 5 5279 5530 708551504 708551760 2.760000e-58 237.0
54 TraesCS5D01G267200 chr7B 85.202 223 29 3 5293 5515 708857727 708857945 5.980000e-55 226.0
55 TraesCS5D01G267200 chr7B 91.111 90 5 3 5138 5225 43549673 43549585 1.040000e-22 119.0
56 TraesCS5D01G267200 chr3A 84.974 193 26 3 5738 5929 883960 884150 6.060000e-45 193.0
57 TraesCS5D01G267200 chr4A 86.567 134 16 1 4755 4888 13440902 13441033 4.790000e-31 147.0
58 TraesCS5D01G267200 chr4A 85.714 63 9 0 5007 5069 13441086 13441148 3.830000e-07 67.6
59 TraesCS5D01G267200 chr3B 95.294 85 4 0 5138 5222 132525346 132525262 1.040000e-27 135.0
60 TraesCS5D01G267200 chr3B 93.902 82 5 0 5141 5222 488190471 488190552 2.240000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G267200 chr5D 370945255 370951183 5928 True 10949.000000 10949 100.000000 1 5929 1 chr5D.!!$R1 5928
1 TraesCS5D01G267200 chr5A 473637391 473642467 5076 True 1213.000000 5454 92.147667 1 5107 6 chr5A.!!$R3 5106
2 TraesCS5D01G267200 chr5B 440274951 440279927 4976 True 1370.800000 5347 92.563600 377 4987 5 chr5B.!!$R2 4610
3 TraesCS5D01G267200 chr5B 97513015 97513536 521 False 327.000000 327 78.766000 5392 5926 1 chr5B.!!$F1 534
4 TraesCS5D01G267200 chr2A 727954065 727955659 1594 False 878.000000 1033 88.195000 2287 3857 2 chr2A.!!$F4 1570
5 TraesCS5D01G267200 chr2B 719468612 719471276 2664 False 366.466667 835 87.311167 2192 4761 6 chr2B.!!$F2 2569
6 TraesCS5D01G267200 chr2D 593214881 593217405 2524 False 462.780000 809 87.642800 2192 4716 5 chr2D.!!$F3 2524
7 TraesCS5D01G267200 chr7D 586744473 586745114 641 True 582.000000 582 83.508000 5282 5929 1 chr7D.!!$R3 647
8 TraesCS5D01G267200 chr7D 83753990 83754624 634 True 512.000000 512 81.947000 5318 5926 1 chr7D.!!$R2 608
9 TraesCS5D01G267200 chr6A 539184569 539185080 511 True 339.000000 339 79.167000 5279 5793 1 chr6A.!!$R1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
555 578 0.028374 AAAACGAAGCCAAACGGTCG 59.972 50.000 0.00 0.00 0.00 4.79 F
575 598 0.374063 CCAACGTTACAACACACGCA 59.626 50.000 0.00 0.00 40.16 5.24 F
776 1060 1.372087 CTCCGATTCCTGGTGCAAGC 61.372 60.000 0.00 0.00 0.00 4.01 F
1457 1763 1.592110 CGTAATGCTGCAAATCCGACG 60.592 52.381 6.36 6.68 0.00 5.12 F
1545 1852 2.819608 TGTTTCAATTGGCAGTAGAGGC 59.180 45.455 5.42 0.00 0.00 4.70 F
1574 1881 3.503748 GCTGGACAGTCAAACTAAATGCT 59.496 43.478 2.17 0.00 0.00 3.79 F
1829 2138 5.898972 AGGTGGTAATATTCATGCCATGTTT 59.101 36.000 4.31 0.00 0.00 2.83 F
3677 4565 4.965119 ATGGAACTTGGTCGAAAATAGC 57.035 40.909 0.00 0.00 0.00 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1545 1852 2.125753 GACTGTCCAGCTGCTCGG 60.126 66.667 8.66 10.66 0.00 4.63 R
2190 2517 2.401766 CGGCAACTCAGGACATGGC 61.402 63.158 0.00 0.00 35.24 4.40 R
2313 2697 3.557595 GCTGTTTCCTATGAGATTCGTGG 59.442 47.826 0.00 0.00 0.00 4.94 R
2997 3592 2.151202 TCTTAAAAAGGCAGCTGACCG 58.849 47.619 18.28 3.08 0.00 4.79 R
3619 4498 9.893975 AAACAAGTACTGGGTATATACTATCCT 57.106 33.333 12.54 0.00 0.00 3.24 R
3677 4565 0.030638 CAAGCACTTCACCCAAACCG 59.969 55.000 0.00 0.00 0.00 4.44 R
3683 4571 2.087646 GAGAATCCAAGCACTTCACCC 58.912 52.381 0.00 0.00 0.00 4.61 R
5164 6315 0.108019 AACTGAACTCCCCCAACGAC 59.892 55.000 0.00 0.00 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 6.757897 ATGAATATGTCACGAACCAAACAT 57.242 33.333 0.00 0.00 39.72 2.71
37 38 1.944024 TGTCACGAACCAAACATGTCC 59.056 47.619 0.00 0.00 0.00 4.02
53 54 2.166829 TGTCCTTTGTTGTTGTGCACT 58.833 42.857 19.41 0.00 0.00 4.40
55 56 2.094752 GTCCTTTGTTGTTGTGCACTGT 60.095 45.455 19.41 0.00 0.00 3.55
56 57 2.560542 TCCTTTGTTGTTGTGCACTGTT 59.439 40.909 19.41 0.00 0.00 3.16
59 60 4.926238 CCTTTGTTGTTGTGCACTGTTTTA 59.074 37.500 19.41 0.00 0.00 1.52
73 74 8.126700 GTGCACTGTTTTATTTTACACTACACT 58.873 33.333 10.32 0.00 0.00 3.55
76 77 9.997482 CACTGTTTTATTTTACACTACACTTGT 57.003 29.630 0.00 0.00 0.00 3.16
80 81 7.479897 TTTATTTTACACTACACTTGTCGCA 57.520 32.000 0.00 0.00 0.00 5.10
130 131 1.586154 CTTGCCATCAACCCGTGACC 61.586 60.000 0.00 0.00 39.72 4.02
162 163 6.178324 ACATAGGGTGACTACTTTTAAAGCC 58.822 40.000 4.42 0.00 33.70 4.35
166 167 5.894964 AGGGTGACTACTTTTAAAGCCAAAA 59.105 36.000 4.42 0.00 0.00 2.44
169 170 7.384115 GGGTGACTACTTTTAAAGCCAAAATTC 59.616 37.037 4.42 0.00 0.00 2.17
170 171 7.114388 GGTGACTACTTTTAAAGCCAAAATTCG 59.886 37.037 4.42 0.00 0.00 3.34
172 173 8.192110 TGACTACTTTTAAAGCCAAAATTCGTT 58.808 29.630 4.42 0.00 0.00 3.85
174 175 9.673454 ACTACTTTTAAAGCCAAAATTCGTTAG 57.327 29.630 4.42 0.00 0.00 2.34
210 216 4.349636 TGAGGTCTAGTTTTGAATGGTCCA 59.650 41.667 0.00 0.00 0.00 4.02
211 217 4.911390 AGGTCTAGTTTTGAATGGTCCAG 58.089 43.478 0.00 0.00 0.00 3.86
215 221 0.729140 GTTTTGAATGGTCCAGCGCG 60.729 55.000 0.00 0.00 0.00 6.86
216 222 2.470801 TTTTGAATGGTCCAGCGCGC 62.471 55.000 26.66 26.66 0.00 6.86
234 240 0.391263 GCCCCACTTTCTACTCCACG 60.391 60.000 0.00 0.00 0.00 4.94
235 241 0.391263 CCCCACTTTCTACTCCACGC 60.391 60.000 0.00 0.00 0.00 5.34
238 244 1.443872 ACTTTCTACTCCACGCGCG 60.444 57.895 30.96 30.96 0.00 6.86
242 248 3.812019 CTACTCCACGCGCGTCCT 61.812 66.667 35.61 17.40 0.00 3.85
245 251 4.498520 CTCCACGCGCGTCCTGAT 62.499 66.667 35.61 7.71 0.00 2.90
320 327 1.365999 CACGTCCTACAGGCACACA 59.634 57.895 0.00 0.00 34.44 3.72
324 331 2.047274 CCTACAGGCACACACCCG 60.047 66.667 0.00 0.00 0.00 5.28
343 350 2.425592 CCCCTTGTGTCAGCGTGA 59.574 61.111 0.00 0.00 0.00 4.35
357 364 1.135939 CGTGATGCATGTGCCAGTG 59.864 57.895 2.46 0.00 41.18 3.66
364 371 1.580845 GCATGTGCCAGTGTGAGGTC 61.581 60.000 0.00 0.00 34.31 3.85
366 373 1.276138 CATGTGCCAGTGTGAGGTCTA 59.724 52.381 0.00 0.00 0.00 2.59
371 378 2.009042 GCCAGTGTGAGGTCTATGTGC 61.009 57.143 0.00 0.00 0.00 4.57
374 381 2.163613 CAGTGTGAGGTCTATGTGCGTA 59.836 50.000 0.00 0.00 0.00 4.42
375 382 2.423892 AGTGTGAGGTCTATGTGCGTAG 59.576 50.000 0.00 0.00 0.00 3.51
383 390 3.442100 GTCTATGTGCGTAGTAACCACC 58.558 50.000 0.00 0.00 0.00 4.61
385 392 0.738412 ATGTGCGTAGTAACCACCGC 60.738 55.000 0.00 0.00 45.92 5.68
392 399 3.310501 GCGTAGTAACCACCGCATATTTT 59.689 43.478 0.00 0.00 45.12 1.82
393 400 4.551410 GCGTAGTAACCACCGCATATTTTC 60.551 45.833 0.00 0.00 45.12 2.29
394 401 4.807304 CGTAGTAACCACCGCATATTTTCT 59.193 41.667 0.00 0.00 0.00 2.52
396 403 4.585879 AGTAACCACCGCATATTTTCTGT 58.414 39.130 0.00 0.00 0.00 3.41
397 404 3.848272 AACCACCGCATATTTTCTGTG 57.152 42.857 0.00 0.00 0.00 3.66
399 406 1.405105 CCACCGCATATTTTCTGTGGG 59.595 52.381 7.70 0.00 46.37 4.61
400 407 1.102978 ACCGCATATTTTCTGTGGGC 58.897 50.000 7.70 0.00 46.37 5.36
401 408 1.102154 CCGCATATTTTCTGTGGGCA 58.898 50.000 0.00 0.00 39.99 5.36
403 410 1.066002 CGCATATTTTCTGTGGGCAGG 59.934 52.381 0.00 0.00 42.78 4.85
404 411 2.378038 GCATATTTTCTGTGGGCAGGA 58.622 47.619 0.00 0.00 42.78 3.86
405 412 2.360165 GCATATTTTCTGTGGGCAGGAG 59.640 50.000 0.00 0.00 42.78 3.69
407 414 2.206576 ATTTTCTGTGGGCAGGAGTC 57.793 50.000 0.00 0.00 42.78 3.36
408 415 0.110486 TTTTCTGTGGGCAGGAGTCC 59.890 55.000 0.00 0.00 42.78 3.85
435 442 0.417841 ACACCATCTAGACCCACCCT 59.582 55.000 0.00 0.00 0.00 4.34
437 444 1.210478 CACCATCTAGACCCACCCTTG 59.790 57.143 0.00 0.00 0.00 3.61
455 462 1.581447 GCACAAAGCAGTGGGTAGC 59.419 57.895 6.18 0.00 44.79 3.58
496 515 6.710295 GCACACCCAGAAATTTAAGGATTTTT 59.290 34.615 9.39 0.00 29.75 1.94
516 539 5.896073 TTTTAAAGGAAAAATGCCTCCCA 57.104 34.783 0.00 0.00 34.00 4.37
549 572 6.986817 TCCATTTTATTGAAAACGAAGCCAAA 59.013 30.769 0.00 0.00 37.37 3.28
550 573 7.042389 TCCATTTTATTGAAAACGAAGCCAAAC 60.042 33.333 0.00 0.00 37.37 2.93
552 575 2.196295 TTGAAAACGAAGCCAAACGG 57.804 45.000 0.00 0.00 0.00 4.44
553 576 1.096416 TGAAAACGAAGCCAAACGGT 58.904 45.000 0.00 0.00 0.00 4.83
554 577 1.064357 TGAAAACGAAGCCAAACGGTC 59.936 47.619 0.00 0.00 0.00 4.79
555 578 0.028374 AAAACGAAGCCAAACGGTCG 59.972 50.000 0.00 0.00 0.00 4.79
556 579 2.383027 AAACGAAGCCAAACGGTCGC 62.383 55.000 0.00 0.00 0.00 5.19
557 580 4.084888 CGAAGCCAAACGGTCGCC 62.085 66.667 0.00 0.00 0.00 5.54
560 583 2.726850 GAAGCCAAACGGTCGCCAAC 62.727 60.000 0.00 0.00 0.00 3.77
568 591 1.202320 CGGTCGCCAACGTTACAAC 59.798 57.895 0.00 0.00 41.18 3.32
569 592 1.489070 CGGTCGCCAACGTTACAACA 61.489 55.000 0.00 0.00 41.18 3.33
575 598 0.374063 CCAACGTTACAACACACGCA 59.626 50.000 0.00 0.00 40.16 5.24
584 608 1.665679 ACAACACACGCAGAGAAACAG 59.334 47.619 0.00 0.00 0.00 3.16
595 619 2.992543 CAGAGAAACAGCTGAGTACTGC 59.007 50.000 23.35 0.00 38.79 4.40
618 643 2.733858 TCGGCAACAAGCAGAAAAACAC 60.734 45.455 0.00 0.00 44.54 3.32
623 648 4.084118 GCAACAAGCAGAAAAACACAACAA 60.084 37.500 0.00 0.00 44.79 2.83
638 663 4.640201 ACACAACAAGCTGAACACAACTAT 59.360 37.500 0.00 0.00 0.00 2.12
644 669 4.271696 AGCTGAACACAACTATGCTACA 57.728 40.909 0.00 0.00 0.00 2.74
645 670 4.248859 AGCTGAACACAACTATGCTACAG 58.751 43.478 0.00 0.00 0.00 2.74
647 672 4.452455 GCTGAACACAACTATGCTACAGTT 59.548 41.667 0.00 0.00 36.68 3.16
656 681 5.667539 ACTATGCTACAGTTCACAGACAT 57.332 39.130 0.00 0.00 0.00 3.06
669 694 1.819288 ACAGACATACAGAGGACACCG 59.181 52.381 0.00 0.00 0.00 4.94
776 1060 1.372087 CTCCGATTCCTGGTGCAAGC 61.372 60.000 0.00 0.00 0.00 4.01
778 1062 1.675310 CGATTCCTGGTGCAAGCCA 60.675 57.895 0.00 0.00 36.97 4.75
854 1146 9.730420 TTTTTATGTCTTTTTGAGCAACTACTC 57.270 29.630 0.00 0.00 37.19 2.59
977 1283 4.443266 GCTCGCTCGCAAGGACCT 62.443 66.667 0.00 0.00 38.47 3.85
1197 1503 2.281761 CGCAGCAAGGTGAGGGTT 60.282 61.111 3.05 0.00 0.00 4.11
1216 1522 3.570125 GGTTAGGTGCTTCTGCTTTCTTT 59.430 43.478 0.00 0.00 40.48 2.52
1219 1525 2.883386 AGGTGCTTCTGCTTTCTTTCTG 59.117 45.455 0.00 0.00 40.48 3.02
1231 1537 4.676924 GCTTTCTTTCTGGTGTTGAATTCG 59.323 41.667 0.04 0.00 0.00 3.34
1271 1577 9.429359 GTATTGAGTTGAATCTCACATATAGGG 57.571 37.037 0.00 0.00 43.01 3.53
1275 1581 7.125659 TGAGTTGAATCTCACATATAGGGTCAA 59.874 37.037 0.00 0.00 39.20 3.18
1457 1763 1.592110 CGTAATGCTGCAAATCCGACG 60.592 52.381 6.36 6.68 0.00 5.12
1513 1820 9.793245 GCGTGTTATTGTTATGTATTCATACTC 57.207 33.333 0.00 0.00 36.42 2.59
1522 1829 5.396328 ATGTATTCATACTCGTGGCGCGA 62.396 47.826 22.90 22.90 38.77 5.87
1530 1837 3.334751 CGTGGCGCGAGTGTTTCA 61.335 61.111 16.70 0.00 44.77 2.69
1543 1850 4.143030 CGAGTGTTTCAATTGGCAGTAGAG 60.143 45.833 5.42 0.00 0.00 2.43
1544 1851 4.074970 AGTGTTTCAATTGGCAGTAGAGG 58.925 43.478 5.42 0.00 0.00 3.69
1545 1852 2.819608 TGTTTCAATTGGCAGTAGAGGC 59.180 45.455 5.42 0.00 0.00 4.70
1574 1881 3.503748 GCTGGACAGTCAAACTAAATGCT 59.496 43.478 2.17 0.00 0.00 3.79
1829 2138 5.898972 AGGTGGTAATATTCATGCCATGTTT 59.101 36.000 4.31 0.00 0.00 2.83
1833 2142 9.410556 GTGGTAATATTCATGCCATGTTTATTC 57.589 33.333 4.31 4.73 0.00 1.75
1923 2241 8.893563 ATGGTATTGGGAGAAAGTTGAAAATA 57.106 30.769 0.00 0.00 0.00 1.40
2118 2445 6.522054 AGGGATATGTACAAATGAGGTTACG 58.478 40.000 0.00 0.00 0.00 3.18
2190 2517 6.044046 TGCTATATAAAGTTGTGTGGGTACG 58.956 40.000 0.00 0.00 0.00 3.67
2313 2697 7.846107 CAGTACGGCATTATATATTTTGCGATC 59.154 37.037 11.33 0.00 35.95 3.69
3302 4178 7.398024 AGTGCCTACAGTCAGATTTCTTTAAT 58.602 34.615 0.00 0.00 0.00 1.40
3677 4565 4.965119 ATGGAACTTGGTCGAAAATAGC 57.035 40.909 0.00 0.00 0.00 2.97
3683 4571 3.058501 ACTTGGTCGAAAATAGCGGTTTG 60.059 43.478 0.00 0.00 0.00 2.93
3735 4623 5.163622 TGTGAAGCAAAGAACAAGAGAAAGG 60.164 40.000 0.00 0.00 0.00 3.11
4082 4973 3.719268 AGTGGTTTGCCTCATATGTGA 57.281 42.857 6.35 0.00 35.27 3.58
4442 5579 5.474825 TCGTTTGATGCAGTAGATGTTGTA 58.525 37.500 0.00 0.00 0.00 2.41
4483 5620 5.327737 TGTTACCCCCTCTTATGTTGTTT 57.672 39.130 0.00 0.00 0.00 2.83
4484 5621 6.451292 TGTTACCCCCTCTTATGTTGTTTA 57.549 37.500 0.00 0.00 0.00 2.01
4485 5622 7.034967 TGTTACCCCCTCTTATGTTGTTTAT 57.965 36.000 0.00 0.00 0.00 1.40
4557 5694 1.202879 TGAACGGCCAGGATCAAACTT 60.203 47.619 2.24 0.00 0.00 2.66
4762 5911 8.470002 GGTAAAAGAAGTGGCAAATGAGAATAT 58.530 33.333 0.00 0.00 0.00 1.28
4798 5947 7.489757 TGAACTTTTGTTTAAATTCCGTGAAGG 59.510 33.333 0.00 0.00 43.66 3.46
4859 6008 7.918643 AGTTGGTATTTGCAAACTGAATTTTG 58.081 30.769 15.41 0.00 39.15 2.44
4870 6019 7.398834 CAAACTGAATTTTGCTAGGAAAGTG 57.601 36.000 9.50 0.00 30.00 3.16
4871 6020 6.715347 AACTGAATTTTGCTAGGAAAGTGT 57.285 33.333 9.50 0.00 0.00 3.55
4872 6021 6.715347 ACTGAATTTTGCTAGGAAAGTGTT 57.285 33.333 9.50 6.65 0.00 3.32
4873 6022 6.507023 ACTGAATTTTGCTAGGAAAGTGTTG 58.493 36.000 9.50 4.93 0.00 3.33
4874 6023 5.841810 TGAATTTTGCTAGGAAAGTGTTGG 58.158 37.500 9.50 0.00 0.00 3.77
4875 6024 4.871933 ATTTTGCTAGGAAAGTGTTGGG 57.128 40.909 9.50 0.00 0.00 4.12
4876 6025 3.586470 TTTGCTAGGAAAGTGTTGGGA 57.414 42.857 5.16 0.00 0.00 4.37
4877 6026 3.586470 TTGCTAGGAAAGTGTTGGGAA 57.414 42.857 0.00 0.00 0.00 3.97
4878 6027 3.586470 TGCTAGGAAAGTGTTGGGAAA 57.414 42.857 0.00 0.00 0.00 3.13
4879 6028 4.112634 TGCTAGGAAAGTGTTGGGAAAT 57.887 40.909 0.00 0.00 0.00 2.17
4880 6029 3.826157 TGCTAGGAAAGTGTTGGGAAATG 59.174 43.478 0.00 0.00 0.00 2.32
4881 6030 3.367395 GCTAGGAAAGTGTTGGGAAATGC 60.367 47.826 0.00 0.00 0.00 3.56
4882 6031 2.676748 AGGAAAGTGTTGGGAAATGCA 58.323 42.857 0.00 0.00 0.00 3.96
4883 6032 3.037549 AGGAAAGTGTTGGGAAATGCAA 58.962 40.909 0.00 0.00 0.00 4.08
4884 6033 3.647590 AGGAAAGTGTTGGGAAATGCAAT 59.352 39.130 0.00 0.00 0.00 3.56
4885 6034 3.747529 GGAAAGTGTTGGGAAATGCAATG 59.252 43.478 0.00 0.00 0.00 2.82
4886 6035 4.379652 GAAAGTGTTGGGAAATGCAATGT 58.620 39.130 0.00 0.00 0.00 2.71
4887 6036 3.389925 AGTGTTGGGAAATGCAATGTG 57.610 42.857 0.00 0.00 0.00 3.21
4888 6037 2.699846 AGTGTTGGGAAATGCAATGTGT 59.300 40.909 0.00 0.00 0.00 3.72
4889 6038 3.134442 AGTGTTGGGAAATGCAATGTGTT 59.866 39.130 0.00 0.00 0.00 3.32
4890 6039 3.876320 GTGTTGGGAAATGCAATGTGTTT 59.124 39.130 0.00 0.00 0.00 2.83
4891 6040 4.024977 GTGTTGGGAAATGCAATGTGTTTC 60.025 41.667 0.00 0.00 0.00 2.78
4892 6041 4.125703 GTTGGGAAATGCAATGTGTTTCA 58.874 39.130 10.89 0.00 34.40 2.69
4893 6042 3.992643 TGGGAAATGCAATGTGTTTCAG 58.007 40.909 10.89 0.00 34.40 3.02
4894 6043 3.640498 TGGGAAATGCAATGTGTTTCAGA 59.360 39.130 10.89 0.00 34.40 3.27
4895 6044 4.283978 TGGGAAATGCAATGTGTTTCAGAT 59.716 37.500 10.89 0.00 34.40 2.90
4896 6045 4.628333 GGGAAATGCAATGTGTTTCAGATG 59.372 41.667 10.89 0.00 34.40 2.90
4897 6046 5.472148 GGAAATGCAATGTGTTTCAGATGA 58.528 37.500 10.89 0.00 34.40 2.92
4898 6047 6.103997 GGAAATGCAATGTGTTTCAGATGAT 58.896 36.000 10.89 0.00 34.40 2.45
4899 6048 6.592607 GGAAATGCAATGTGTTTCAGATGATT 59.407 34.615 10.89 0.00 34.40 2.57
4926 6076 4.694509 GCAAATGCAATGTGTTGGGAAATA 59.305 37.500 0.00 0.00 41.59 1.40
4932 6082 6.402222 TGCAATGTGTTGGGAAATAATAACC 58.598 36.000 0.00 0.00 35.83 2.85
4977 6128 4.338400 ACAGTTTTGCTAGGAAAGAACCAC 59.662 41.667 9.50 5.11 0.00 4.16
4987 6138 2.489722 GGAAAGAACCACCTGCTCATTC 59.510 50.000 0.00 0.00 0.00 2.67
4988 6139 2.206576 AAGAACCACCTGCTCATTCC 57.793 50.000 0.00 0.00 0.00 3.01
4989 6140 0.036010 AGAACCACCTGCTCATTCCG 60.036 55.000 0.00 0.00 0.00 4.30
4991 6142 0.620556 AACCACCTGCTCATTCCGAT 59.379 50.000 0.00 0.00 0.00 4.18
4992 6143 0.620556 ACCACCTGCTCATTCCGATT 59.379 50.000 0.00 0.00 0.00 3.34
4994 6145 2.094675 CCACCTGCTCATTCCGATTTT 58.905 47.619 0.00 0.00 0.00 1.82
4996 6147 3.012518 CACCTGCTCATTCCGATTTTCT 58.987 45.455 0.00 0.00 0.00 2.52
4997 6148 3.441572 CACCTGCTCATTCCGATTTTCTT 59.558 43.478 0.00 0.00 0.00 2.52
4998 6149 3.691609 ACCTGCTCATTCCGATTTTCTTC 59.308 43.478 0.00 0.00 0.00 2.87
4999 6150 3.944015 CCTGCTCATTCCGATTTTCTTCT 59.056 43.478 0.00 0.00 0.00 2.85
5000 6151 4.397417 CCTGCTCATTCCGATTTTCTTCTT 59.603 41.667 0.00 0.00 0.00 2.52
5001 6152 5.448360 CCTGCTCATTCCGATTTTCTTCTTC 60.448 44.000 0.00 0.00 0.00 2.87
5002 6153 5.248640 TGCTCATTCCGATTTTCTTCTTCT 58.751 37.500 0.00 0.00 0.00 2.85
5003 6154 5.122869 TGCTCATTCCGATTTTCTTCTTCTG 59.877 40.000 0.00 0.00 0.00 3.02
5004 6155 5.352569 GCTCATTCCGATTTTCTTCTTCTGA 59.647 40.000 0.00 0.00 0.00 3.27
5005 6156 6.128172 GCTCATTCCGATTTTCTTCTTCTGAA 60.128 38.462 0.00 0.00 0.00 3.02
5006 6157 7.573843 GCTCATTCCGATTTTCTTCTTCTGAAA 60.574 37.037 0.00 0.00 0.00 2.69
5007 6158 8.165239 TCATTCCGATTTTCTTCTTCTGAAAA 57.835 30.769 0.00 0.00 44.23 2.29
5008 6159 8.629158 TCATTCCGATTTTCTTCTTCTGAAAAA 58.371 29.630 5.87 0.00 43.62 1.94
5009 6160 8.909671 CATTCCGATTTTCTTCTTCTGAAAAAG 58.090 33.333 5.87 0.00 43.62 2.27
5010 6161 7.801716 TCCGATTTTCTTCTTCTGAAAAAGA 57.198 32.000 2.12 2.12 43.62 2.52
5011 6162 8.220755 TCCGATTTTCTTCTTCTGAAAAAGAA 57.779 30.769 13.42 13.42 43.62 2.52
5012 6163 8.129211 TCCGATTTTCTTCTTCTGAAAAAGAAC 58.871 33.333 16.29 6.77 43.62 3.01
5013 6164 7.379797 CCGATTTTCTTCTTCTGAAAAAGAACC 59.620 37.037 16.29 9.28 43.62 3.62
5014 6165 7.915397 CGATTTTCTTCTTCTGAAAAAGAACCA 59.085 33.333 16.29 8.49 43.62 3.67
5015 6166 8.932945 ATTTTCTTCTTCTGAAAAAGAACCAC 57.067 30.769 16.29 0.00 43.62 4.16
5016 6167 6.451064 TTCTTCTTCTGAAAAAGAACCACC 57.549 37.500 13.42 0.00 40.09 4.61
5017 6168 5.755849 TCTTCTTCTGAAAAAGAACCACCT 58.244 37.500 3.76 0.00 40.09 4.00
5018 6169 5.590259 TCTTCTTCTGAAAAAGAACCACCTG 59.410 40.000 3.76 0.00 40.09 4.00
5019 6170 3.632145 TCTTCTGAAAAAGAACCACCTGC 59.368 43.478 0.00 0.00 40.09 4.85
5020 6171 3.297134 TCTGAAAAAGAACCACCTGCT 57.703 42.857 0.00 0.00 29.54 4.24
5021 6172 3.214328 TCTGAAAAAGAACCACCTGCTC 58.786 45.455 0.00 0.00 29.54 4.26
5022 6173 2.951642 CTGAAAAAGAACCACCTGCTCA 59.048 45.455 0.00 0.00 0.00 4.26
5023 6174 2.687935 TGAAAAAGAACCACCTGCTCAC 59.312 45.455 0.00 0.00 0.00 3.51
5024 6175 2.736670 AAAAGAACCACCTGCTCACT 57.263 45.000 0.00 0.00 0.00 3.41
5025 6176 3.857157 AAAAGAACCACCTGCTCACTA 57.143 42.857 0.00 0.00 0.00 2.74
5026 6177 3.857157 AAAGAACCACCTGCTCACTAA 57.143 42.857 0.00 0.00 0.00 2.24
5027 6178 4.373156 AAAGAACCACCTGCTCACTAAT 57.627 40.909 0.00 0.00 0.00 1.73
5028 6179 5.499004 AAAGAACCACCTGCTCACTAATA 57.501 39.130 0.00 0.00 0.00 0.98
5029 6180 5.499004 AAGAACCACCTGCTCACTAATAA 57.501 39.130 0.00 0.00 0.00 1.40
5030 6181 4.833390 AGAACCACCTGCTCACTAATAAC 58.167 43.478 0.00 0.00 0.00 1.89
5031 6182 4.286032 AGAACCACCTGCTCACTAATAACA 59.714 41.667 0.00 0.00 0.00 2.41
5032 6183 4.634012 ACCACCTGCTCACTAATAACAA 57.366 40.909 0.00 0.00 0.00 2.83
5033 6184 4.324267 ACCACCTGCTCACTAATAACAAC 58.676 43.478 0.00 0.00 0.00 3.32
5034 6185 3.689649 CCACCTGCTCACTAATAACAACC 59.310 47.826 0.00 0.00 0.00 3.77
5035 6186 4.323417 CACCTGCTCACTAATAACAACCA 58.677 43.478 0.00 0.00 0.00 3.67
5036 6187 4.943705 CACCTGCTCACTAATAACAACCAT 59.056 41.667 0.00 0.00 0.00 3.55
5037 6188 6.112734 CACCTGCTCACTAATAACAACCATA 58.887 40.000 0.00 0.00 0.00 2.74
5038 6189 6.037172 CACCTGCTCACTAATAACAACCATAC 59.963 42.308 0.00 0.00 0.00 2.39
5039 6190 6.112734 CCTGCTCACTAATAACAACCATACA 58.887 40.000 0.00 0.00 0.00 2.29
5096 6247 0.802494 GCGCGAAAGAAGGGAATTCA 59.198 50.000 12.10 0.00 40.67 2.57
5103 6254 5.696270 GCGAAAGAAGGGAATTCATTGTTTT 59.304 36.000 14.75 7.38 40.67 2.43
5120 6271 9.521841 TCATTGTTTTATATTACCTGTGTTCCA 57.478 29.630 0.00 0.00 0.00 3.53
5124 6275 8.798402 TGTTTTATATTACCTGTGTTCCAAAGG 58.202 33.333 0.00 0.00 44.14 3.11
5125 6276 7.948034 TTTATATTACCTGTGTTCCAAAGGG 57.052 36.000 5.48 0.00 42.92 3.95
5126 6277 5.789574 ATATTACCTGTGTTCCAAAGGGA 57.210 39.130 5.48 0.00 42.92 4.20
5127 6278 4.463050 ATTACCTGTGTTCCAAAGGGAA 57.537 40.909 0.55 0.55 44.95 3.97
5168 6319 9.729281 TTACCTCTTTTCCAAAATATAAGTCGT 57.271 29.630 0.00 0.00 0.00 4.34
5169 6320 8.631480 ACCTCTTTTCCAAAATATAAGTCGTT 57.369 30.769 0.00 0.00 0.00 3.85
5170 6321 8.512138 ACCTCTTTTCCAAAATATAAGTCGTTG 58.488 33.333 0.00 0.00 0.00 4.10
5171 6322 7.968405 CCTCTTTTCCAAAATATAAGTCGTTGG 59.032 37.037 0.00 0.00 40.12 3.77
5172 6323 7.822658 TCTTTTCCAAAATATAAGTCGTTGGG 58.177 34.615 0.00 0.00 39.39 4.12
5173 6324 6.518208 TTTCCAAAATATAAGTCGTTGGGG 57.482 37.500 0.00 0.00 39.39 4.96
5174 6325 4.528920 TCCAAAATATAAGTCGTTGGGGG 58.471 43.478 0.00 0.00 39.39 5.40
5175 6326 4.227754 TCCAAAATATAAGTCGTTGGGGGA 59.772 41.667 0.00 0.00 39.39 4.81
5176 6327 4.578928 CCAAAATATAAGTCGTTGGGGGAG 59.421 45.833 0.00 0.00 36.00 4.30
5177 6328 5.190677 CAAAATATAAGTCGTTGGGGGAGT 58.809 41.667 0.00 0.00 0.00 3.85
5178 6329 5.446260 AAATATAAGTCGTTGGGGGAGTT 57.554 39.130 0.00 0.00 0.00 3.01
5179 6330 4.684484 ATATAAGTCGTTGGGGGAGTTC 57.316 45.455 0.00 0.00 0.00 3.01
5180 6331 1.719529 TAAGTCGTTGGGGGAGTTCA 58.280 50.000 0.00 0.00 0.00 3.18
5181 6332 0.396811 AAGTCGTTGGGGGAGTTCAG 59.603 55.000 0.00 0.00 0.00 3.02
5182 6333 0.763223 AGTCGTTGGGGGAGTTCAGT 60.763 55.000 0.00 0.00 0.00 3.41
5183 6334 0.108019 GTCGTTGGGGGAGTTCAGTT 59.892 55.000 0.00 0.00 0.00 3.16
5184 6335 0.841289 TCGTTGGGGGAGTTCAGTTT 59.159 50.000 0.00 0.00 0.00 2.66
5185 6336 2.048601 TCGTTGGGGGAGTTCAGTTTA 58.951 47.619 0.00 0.00 0.00 2.01
5186 6337 2.148768 CGTTGGGGGAGTTCAGTTTAC 58.851 52.381 0.00 0.00 0.00 2.01
5187 6338 2.485835 CGTTGGGGGAGTTCAGTTTACA 60.486 50.000 0.00 0.00 0.00 2.41
5188 6339 2.882761 GTTGGGGGAGTTCAGTTTACAC 59.117 50.000 0.00 0.00 0.00 2.90
5189 6340 2.414612 TGGGGGAGTTCAGTTTACACT 58.585 47.619 0.00 0.00 0.00 3.55
5190 6341 2.370849 TGGGGGAGTTCAGTTTACACTC 59.629 50.000 0.00 0.00 36.91 3.51
5194 6345 3.055209 GAGTTCAGTTTACACTCCCCC 57.945 52.381 0.00 0.00 32.26 5.40
5195 6346 2.370849 GAGTTCAGTTTACACTCCCCCA 59.629 50.000 0.00 0.00 32.26 4.96
5196 6347 2.781174 AGTTCAGTTTACACTCCCCCAA 59.219 45.455 0.00 0.00 0.00 4.12
5197 6348 2.882761 GTTCAGTTTACACTCCCCCAAC 59.117 50.000 0.00 0.00 0.00 3.77
5198 6349 1.071071 TCAGTTTACACTCCCCCAACG 59.929 52.381 0.00 0.00 0.00 4.10
5199 6350 1.071071 CAGTTTACACTCCCCCAACGA 59.929 52.381 0.00 0.00 0.00 3.85
5200 6351 1.071228 AGTTTACACTCCCCCAACGAC 59.929 52.381 0.00 0.00 0.00 4.34
5201 6352 1.071228 GTTTACACTCCCCCAACGACT 59.929 52.381 0.00 0.00 0.00 4.18
5202 6353 1.426751 TTACACTCCCCCAACGACTT 58.573 50.000 0.00 0.00 0.00 3.01
5203 6354 2.307496 TACACTCCCCCAACGACTTA 57.693 50.000 0.00 0.00 0.00 2.24
5204 6355 1.652947 ACACTCCCCCAACGACTTAT 58.347 50.000 0.00 0.00 0.00 1.73
5205 6356 2.823959 ACACTCCCCCAACGACTTATA 58.176 47.619 0.00 0.00 0.00 0.98
5206 6357 3.381335 ACACTCCCCCAACGACTTATAT 58.619 45.455 0.00 0.00 0.00 0.86
5207 6358 3.778629 ACACTCCCCCAACGACTTATATT 59.221 43.478 0.00 0.00 0.00 1.28
5208 6359 4.226620 ACACTCCCCCAACGACTTATATTT 59.773 41.667 0.00 0.00 0.00 1.40
5209 6360 5.426185 ACACTCCCCCAACGACTTATATTTA 59.574 40.000 0.00 0.00 0.00 1.40
5210 6361 5.989777 CACTCCCCCAACGACTTATATTTAG 59.010 44.000 0.00 0.00 0.00 1.85
5211 6362 5.071384 ACTCCCCCAACGACTTATATTTAGG 59.929 44.000 0.00 0.00 0.00 2.69
5212 6363 5.218179 TCCCCCAACGACTTATATTTAGGA 58.782 41.667 0.00 0.00 0.00 2.94
5213 6364 5.666718 TCCCCCAACGACTTATATTTAGGAA 59.333 40.000 0.00 0.00 0.00 3.36
5214 6365 5.761726 CCCCCAACGACTTATATTTAGGAAC 59.238 44.000 0.00 0.00 0.00 3.62
5215 6366 5.464389 CCCCAACGACTTATATTTAGGAACG 59.536 44.000 0.00 0.00 0.00 3.95
5216 6367 6.275335 CCCAACGACTTATATTTAGGAACGA 58.725 40.000 0.00 0.00 0.00 3.85
5217 6368 6.757947 CCCAACGACTTATATTTAGGAACGAA 59.242 38.462 0.00 0.00 0.00 3.85
5218 6369 7.042925 CCCAACGACTTATATTTAGGAACGAAG 60.043 40.741 0.00 0.00 0.00 3.79
5219 6370 7.042925 CCAACGACTTATATTTAGGAACGAAGG 60.043 40.741 0.00 0.00 0.00 3.46
5220 6371 6.510536 ACGACTTATATTTAGGAACGAAGGG 58.489 40.000 0.00 0.00 0.00 3.95
5221 6372 6.322201 ACGACTTATATTTAGGAACGAAGGGA 59.678 38.462 0.00 0.00 0.00 4.20
5222 6373 7.015001 ACGACTTATATTTAGGAACGAAGGGAT 59.985 37.037 0.00 0.00 0.00 3.85
5223 6374 8.517878 CGACTTATATTTAGGAACGAAGGGATA 58.482 37.037 0.00 0.00 0.00 2.59
5224 6375 9.636879 GACTTATATTTAGGAACGAAGGGATAC 57.363 37.037 0.00 0.00 0.00 2.24
5225 6376 8.302438 ACTTATATTTAGGAACGAAGGGATACG 58.698 37.037 0.00 0.00 37.60 3.06
5226 6377 2.877043 TTAGGAACGAAGGGATACGC 57.123 50.000 0.00 0.00 37.60 4.42
5227 6378 2.062971 TAGGAACGAAGGGATACGCT 57.937 50.000 0.00 0.00 37.60 5.07
5228 6379 2.062971 AGGAACGAAGGGATACGCTA 57.937 50.000 0.00 0.00 37.60 4.26
5229 6380 1.680207 AGGAACGAAGGGATACGCTAC 59.320 52.381 0.00 0.00 37.60 3.58
5230 6381 1.406539 GGAACGAAGGGATACGCTACA 59.593 52.381 0.00 0.00 37.60 2.74
5231 6382 2.035576 GGAACGAAGGGATACGCTACAT 59.964 50.000 0.00 0.00 37.60 2.29
5232 6383 2.795175 ACGAAGGGATACGCTACATG 57.205 50.000 0.00 0.00 37.60 3.21
5233 6384 1.269621 ACGAAGGGATACGCTACATGC 60.270 52.381 0.00 0.00 38.57 4.06
5234 6385 1.269569 CGAAGGGATACGCTACATGCA 60.270 52.381 0.00 0.00 43.06 3.96
5235 6386 2.610479 CGAAGGGATACGCTACATGCAT 60.610 50.000 0.00 0.00 43.06 3.96
5236 6387 2.462456 AGGGATACGCTACATGCATG 57.538 50.000 25.09 25.09 43.06 4.06
5237 6388 1.970640 AGGGATACGCTACATGCATGA 59.029 47.619 32.75 15.12 43.06 3.07
5238 6389 2.069273 GGGATACGCTACATGCATGAC 58.931 52.381 32.75 19.09 43.06 3.06
5239 6390 1.721389 GGATACGCTACATGCATGACG 59.279 52.381 32.75 29.46 43.06 4.35
5240 6391 1.721389 GATACGCTACATGCATGACGG 59.279 52.381 32.75 20.46 43.06 4.79
5241 6392 0.458260 TACGCTACATGCATGACGGT 59.542 50.000 32.75 23.13 43.06 4.83
5242 6393 1.083806 ACGCTACATGCATGACGGTG 61.084 55.000 32.75 25.28 43.06 4.94
5243 6394 1.353103 GCTACATGCATGACGGTGC 59.647 57.895 32.75 21.58 45.25 5.01
5244 6395 1.091771 GCTACATGCATGACGGTGCT 61.092 55.000 32.75 11.20 45.27 4.40
5245 6396 1.372582 CTACATGCATGACGGTGCTT 58.627 50.000 32.75 10.44 45.27 3.91
5246 6397 2.549926 CTACATGCATGACGGTGCTTA 58.450 47.619 32.75 11.04 45.27 3.09
5247 6398 1.819928 ACATGCATGACGGTGCTTAA 58.180 45.000 32.75 0.00 45.27 1.85
5248 6399 1.739466 ACATGCATGACGGTGCTTAAG 59.261 47.619 32.75 0.00 45.27 1.85
5249 6400 1.739466 CATGCATGACGGTGCTTAAGT 59.261 47.619 22.59 0.00 45.27 2.24
5250 6401 1.890876 TGCATGACGGTGCTTAAGTT 58.109 45.000 4.02 0.00 45.27 2.66
5251 6402 1.535028 TGCATGACGGTGCTTAAGTTG 59.465 47.619 4.02 0.00 45.27 3.16
5252 6403 1.535462 GCATGACGGTGCTTAAGTTGT 59.465 47.619 4.02 0.00 41.82 3.32
5253 6404 2.665519 GCATGACGGTGCTTAAGTTGTG 60.666 50.000 4.02 0.00 41.82 3.33
5254 6405 2.319136 TGACGGTGCTTAAGTTGTGT 57.681 45.000 4.02 0.00 0.00 3.72
5255 6406 1.937223 TGACGGTGCTTAAGTTGTGTG 59.063 47.619 4.02 0.00 0.00 3.82
5256 6407 0.661020 ACGGTGCTTAAGTTGTGTGC 59.339 50.000 4.02 0.00 0.00 4.57
5257 6408 0.384230 CGGTGCTTAAGTTGTGTGCG 60.384 55.000 4.02 0.00 0.00 5.34
5258 6409 0.661020 GGTGCTTAAGTTGTGTGCGT 59.339 50.000 4.02 0.00 0.00 5.24
5259 6410 1.333791 GGTGCTTAAGTTGTGTGCGTC 60.334 52.381 4.02 0.00 0.00 5.19
5260 6411 0.941542 TGCTTAAGTTGTGTGCGTCC 59.058 50.000 4.02 0.00 0.00 4.79
5261 6412 0.110823 GCTTAAGTTGTGTGCGTCCG 60.111 55.000 4.02 0.00 0.00 4.79
5262 6413 1.214367 CTTAAGTTGTGTGCGTCCGT 58.786 50.000 0.00 0.00 0.00 4.69
5263 6414 1.191647 CTTAAGTTGTGTGCGTCCGTC 59.808 52.381 0.00 0.00 0.00 4.79
5264 6415 0.386476 TAAGTTGTGTGCGTCCGTCT 59.614 50.000 0.00 0.00 0.00 4.18
5265 6416 1.151777 AAGTTGTGTGCGTCCGTCTG 61.152 55.000 0.00 0.00 0.00 3.51
5266 6417 1.881252 GTTGTGTGCGTCCGTCTGT 60.881 57.895 0.00 0.00 0.00 3.41
5267 6418 1.880796 TTGTGTGCGTCCGTCTGTG 60.881 57.895 0.00 0.00 0.00 3.66
5268 6419 2.279252 GTGTGCGTCCGTCTGTGT 60.279 61.111 0.00 0.00 0.00 3.72
5269 6420 2.279186 TGTGCGTCCGTCTGTGTG 60.279 61.111 0.00 0.00 0.00 3.82
5270 6421 2.027024 GTGCGTCCGTCTGTGTGA 59.973 61.111 0.00 0.00 0.00 3.58
5271 6422 1.372997 GTGCGTCCGTCTGTGTGAT 60.373 57.895 0.00 0.00 0.00 3.06
5272 6423 0.109458 GTGCGTCCGTCTGTGTGATA 60.109 55.000 0.00 0.00 0.00 2.15
5273 6424 0.815095 TGCGTCCGTCTGTGTGATAT 59.185 50.000 0.00 0.00 0.00 1.63
5274 6425 1.200483 GCGTCCGTCTGTGTGATATG 58.800 55.000 0.00 0.00 0.00 1.78
5275 6426 1.840181 CGTCCGTCTGTGTGATATGG 58.160 55.000 0.00 0.00 0.00 2.74
5276 6427 1.571919 GTCCGTCTGTGTGATATGGC 58.428 55.000 0.00 0.00 0.00 4.40
5277 6428 1.137086 GTCCGTCTGTGTGATATGGCT 59.863 52.381 0.00 0.00 0.00 4.75
5346 6497 0.749454 CATCTCCGAGGCCCCAAAAG 60.749 60.000 0.00 0.00 0.00 2.27
5347 6498 1.208165 ATCTCCGAGGCCCCAAAAGT 61.208 55.000 0.00 0.00 0.00 2.66
5414 6570 6.082707 ACCTCCCGGAGATGTAAACTATAAT 58.917 40.000 16.69 0.00 0.00 1.28
5464 6620 4.400567 ACCTATAGGAGACGTAAAAACGCT 59.599 41.667 26.01 0.00 38.94 5.07
5542 6698 4.704833 GACTCTTGCCTGCCCGCA 62.705 66.667 0.00 0.00 36.85 5.69
5599 6755 3.068881 CCGCCTTCTCCAACTCCA 58.931 61.111 0.00 0.00 0.00 3.86
5603 6759 2.058675 CCTTCTCCAACTCCACCGT 58.941 57.895 0.00 0.00 0.00 4.83
5606 6762 0.824595 TTCTCCAACTCCACCGTCGA 60.825 55.000 0.00 0.00 0.00 4.20
5619 6775 2.911143 GTCGATGCCCTGACCCAT 59.089 61.111 0.00 0.00 0.00 4.00
5657 6842 1.077787 CTGCGGCAACTATCCCCAA 60.078 57.895 3.44 0.00 0.00 4.12
5695 6881 2.603171 CAATTTGCCCCACCCCGT 60.603 61.111 0.00 0.00 0.00 5.28
5834 7020 1.265635 CAAAAATGTCGAAGCCGGACA 59.734 47.619 5.05 0.00 36.24 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 5.471797 ACATGTTTGGTTCGTGACATATTCA 59.528 36.000 0.00 0.00 31.92 2.57
12 13 5.938322 ACATGTTTGGTTCGTGACATATTC 58.062 37.500 0.00 0.00 31.92 1.75
33 34 2.094803 CAGTGCACAACAACAAAGGACA 60.095 45.455 21.04 0.00 0.00 4.02
37 38 4.988708 AAAACAGTGCACAACAACAAAG 57.011 36.364 21.04 0.00 0.00 2.77
53 54 7.851963 GCGACAAGTGTAGTGTAAAATAAAACA 59.148 33.333 0.00 0.00 0.00 2.83
55 56 7.917597 TGCGACAAGTGTAGTGTAAAATAAAA 58.082 30.769 0.00 0.00 0.00 1.52
56 57 7.479897 TGCGACAAGTGTAGTGTAAAATAAA 57.520 32.000 0.00 0.00 0.00 1.40
59 60 5.994887 TTGCGACAAGTGTAGTGTAAAAT 57.005 34.783 0.00 0.00 0.00 1.82
73 74 1.202245 GCCAACACTCTTTTGCGACAA 60.202 47.619 0.00 0.00 0.00 3.18
76 77 0.465460 AGGCCAACACTCTTTTGCGA 60.465 50.000 5.01 0.00 0.00 5.10
77 78 0.385390 AAGGCCAACACTCTTTTGCG 59.615 50.000 5.01 0.00 0.00 4.85
80 81 1.676006 CGACAAGGCCAACACTCTTTT 59.324 47.619 5.01 0.00 0.00 2.27
189 195 4.807643 GCTGGACCATTCAAAACTAGACCT 60.808 45.833 0.00 0.00 0.00 3.85
191 197 3.125316 CGCTGGACCATTCAAAACTAGAC 59.875 47.826 0.00 0.00 0.00 2.59
197 203 1.578926 CGCGCTGGACCATTCAAAA 59.421 52.632 5.56 0.00 0.00 2.44
210 216 3.702048 TAGAAAGTGGGGCGCGCT 61.702 61.111 32.29 12.27 0.00 5.92
211 217 3.497031 GTAGAAAGTGGGGCGCGC 61.497 66.667 25.94 25.94 0.00 6.86
215 221 0.391263 CGTGGAGTAGAAAGTGGGGC 60.391 60.000 0.00 0.00 0.00 5.80
216 222 0.391263 GCGTGGAGTAGAAAGTGGGG 60.391 60.000 0.00 0.00 0.00 4.96
222 228 1.443194 GACGCGCGTGGAGTAGAAA 60.443 57.895 42.90 0.00 0.00 2.52
226 232 4.111016 CAGGACGCGCGTGGAGTA 62.111 66.667 42.90 0.00 0.00 2.59
238 244 4.492160 TCGCGTCGGCATCAGGAC 62.492 66.667 5.77 0.00 39.92 3.85
297 303 4.143333 CCTGTAGGACGTGGCGGG 62.143 72.222 0.00 0.00 37.39 6.13
324 331 4.643387 ACGCTGACACAAGGGGGC 62.643 66.667 0.00 0.00 34.56 5.80
327 334 1.915614 GCATCACGCTGACACAAGGG 61.916 60.000 0.00 0.00 37.77 3.95
329 336 0.800631 ATGCATCACGCTGACACAAG 59.199 50.000 0.00 0.00 43.06 3.16
332 339 0.179207 CACATGCATCACGCTGACAC 60.179 55.000 0.00 0.00 43.06 3.67
335 342 2.400962 GGCACATGCATCACGCTGA 61.401 57.895 6.15 0.00 44.36 4.26
343 350 0.963856 CCTCACACTGGCACATGCAT 60.964 55.000 6.15 0.00 44.36 3.96
347 354 1.644509 TAGACCTCACACTGGCACAT 58.355 50.000 0.00 0.00 38.20 3.21
357 364 4.349501 GTTACTACGCACATAGACCTCAC 58.650 47.826 0.00 0.00 0.00 3.51
364 371 2.456989 CGGTGGTTACTACGCACATAG 58.543 52.381 0.00 0.00 31.22 2.23
366 373 3.429043 CGGTGGTTACTACGCACAT 57.571 52.632 0.00 0.00 31.22 3.21
371 378 4.807304 AGAAAATATGCGGTGGTTACTACG 59.193 41.667 0.00 0.00 0.00 3.51
374 381 4.394920 CACAGAAAATATGCGGTGGTTACT 59.605 41.667 0.00 0.00 0.00 2.24
375 382 4.438200 CCACAGAAAATATGCGGTGGTTAC 60.438 45.833 11.86 0.00 42.80 2.50
396 403 2.930019 CTGGTGGACTCCTGCCCA 60.930 66.667 0.00 0.00 0.00 5.36
397 404 2.607750 TCTGGTGGACTCCTGCCC 60.608 66.667 0.00 0.00 0.00 5.36
398 405 2.217038 TGTCTGGTGGACTCCTGCC 61.217 63.158 0.00 0.00 44.74 4.85
399 406 1.004440 GTGTCTGGTGGACTCCTGC 60.004 63.158 0.00 0.00 44.74 4.85
400 407 0.034059 GTGTGTCTGGTGGACTCCTG 59.966 60.000 0.00 0.00 44.74 3.86
401 408 1.122019 GGTGTGTCTGGTGGACTCCT 61.122 60.000 0.00 0.00 44.74 3.69
403 410 0.687354 ATGGTGTGTCTGGTGGACTC 59.313 55.000 0.00 0.00 44.74 3.36
404 411 0.687354 GATGGTGTGTCTGGTGGACT 59.313 55.000 0.00 0.00 44.74 3.85
405 412 0.687354 AGATGGTGTGTCTGGTGGAC 59.313 55.000 0.00 0.00 44.70 4.02
407 414 2.093973 GTCTAGATGGTGTGTCTGGTGG 60.094 54.545 0.00 0.00 0.00 4.61
408 415 2.093973 GGTCTAGATGGTGTGTCTGGTG 60.094 54.545 0.00 0.00 0.00 4.17
409 416 2.180276 GGTCTAGATGGTGTGTCTGGT 58.820 52.381 0.00 0.00 0.00 4.00
437 444 1.581447 GCTACCCACTGCTTTGTGC 59.419 57.895 0.00 0.00 43.25 4.57
468 487 3.306019 CCTTAAATTTCTGGGTGTGCCAC 60.306 47.826 0.00 0.00 36.17 5.01
496 515 3.580895 GGTGGGAGGCATTTTTCCTTTAA 59.419 43.478 0.00 0.00 33.24 1.52
498 517 1.977854 GGTGGGAGGCATTTTTCCTTT 59.022 47.619 0.00 0.00 33.24 3.11
499 518 1.644509 GGTGGGAGGCATTTTTCCTT 58.355 50.000 0.00 0.00 33.24 3.36
500 519 0.252239 GGGTGGGAGGCATTTTTCCT 60.252 55.000 0.00 0.00 36.46 3.36
501 520 0.252239 AGGGTGGGAGGCATTTTTCC 60.252 55.000 0.00 0.00 0.00 3.13
504 523 1.079073 CCAGGGTGGGAGGCATTTT 59.921 57.895 0.00 0.00 32.67 1.82
505 524 2.772924 CCAGGGTGGGAGGCATTT 59.227 61.111 0.00 0.00 32.67 2.32
514 537 2.431782 CAATAAAATGGAGCCAGGGTGG 59.568 50.000 0.00 0.00 41.55 4.61
516 539 3.756082 TCAATAAAATGGAGCCAGGGT 57.244 42.857 0.00 0.00 0.00 4.34
549 572 1.227205 TTGTAACGTTGGCGACCGT 60.227 52.632 11.99 0.00 42.00 4.83
550 573 1.202320 GTTGTAACGTTGGCGACCG 59.798 57.895 11.99 0.00 42.00 4.79
552 575 0.651551 TGTGTTGTAACGTTGGCGAC 59.348 50.000 11.99 13.55 42.00 5.19
553 576 0.651551 GTGTGTTGTAACGTTGGCGA 59.348 50.000 11.99 0.58 42.00 5.54
554 577 0.652180 CGTGTGTTGTAACGTTGGCG 60.652 55.000 11.99 0.17 44.93 5.69
555 578 0.926628 GCGTGTGTTGTAACGTTGGC 60.927 55.000 11.99 4.35 41.76 4.52
556 579 0.374063 TGCGTGTGTTGTAACGTTGG 59.626 50.000 11.99 0.00 41.76 3.77
557 580 1.325037 TCTGCGTGTGTTGTAACGTTG 59.675 47.619 11.99 0.00 41.76 4.10
560 583 1.483316 TCTCTGCGTGTGTTGTAACG 58.517 50.000 0.00 0.00 42.61 3.18
568 591 0.234106 CAGCTGTTTCTCTGCGTGTG 59.766 55.000 5.25 0.00 44.03 3.82
569 592 0.104855 TCAGCTGTTTCTCTGCGTGT 59.895 50.000 14.67 0.00 44.03 4.49
575 598 2.028567 GGCAGTACTCAGCTGTTTCTCT 60.029 50.000 14.67 4.65 36.42 3.10
584 608 2.202810 GCCGAGGCAGTACTCAGC 60.203 66.667 9.58 0.00 41.49 4.26
595 619 0.667993 TTTTCTGCTTGTTGCCGAGG 59.332 50.000 0.00 0.00 42.00 4.63
609 633 4.923281 GTGTTCAGCTTGTTGTGTTTTTCT 59.077 37.500 0.00 0.00 0.00 2.52
610 634 4.683781 TGTGTTCAGCTTGTTGTGTTTTTC 59.316 37.500 0.00 0.00 0.00 2.29
618 643 3.976942 GCATAGTTGTGTTCAGCTTGTTG 59.023 43.478 0.00 0.00 36.56 3.33
623 648 4.248859 CTGTAGCATAGTTGTGTTCAGCT 58.751 43.478 0.00 0.00 38.58 4.24
638 663 4.522789 TCTGTATGTCTGTGAACTGTAGCA 59.477 41.667 0.00 0.00 0.00 3.49
644 669 4.021894 GTGTCCTCTGTATGTCTGTGAACT 60.022 45.833 0.00 0.00 0.00 3.01
645 670 4.238514 GTGTCCTCTGTATGTCTGTGAAC 58.761 47.826 0.00 0.00 0.00 3.18
647 672 2.826128 GGTGTCCTCTGTATGTCTGTGA 59.174 50.000 0.00 0.00 0.00 3.58
656 681 1.000506 GTTGCTTCGGTGTCCTCTGTA 59.999 52.381 0.00 0.00 0.00 2.74
669 694 1.609208 ACATGTCAGTGGGTTGCTTC 58.391 50.000 0.00 0.00 0.00 3.86
834 1126 7.391148 AAAAGAGTAGTTGCTCAAAAAGACA 57.609 32.000 0.19 0.00 37.94 3.41
1130 1436 3.483869 GGGCGAGCAGAAGGGGAT 61.484 66.667 0.00 0.00 0.00 3.85
1197 1503 4.067896 CAGAAAGAAAGCAGAAGCACCTA 58.932 43.478 0.00 0.00 45.49 3.08
1216 1522 3.130633 CACTCACGAATTCAACACCAGA 58.869 45.455 6.22 0.00 0.00 3.86
1219 1525 2.869801 TGTCACTCACGAATTCAACACC 59.130 45.455 6.22 0.00 0.00 4.16
1231 1537 6.646653 TCAACTCAATACTCATTGTCACTCAC 59.353 38.462 0.00 0.00 41.96 3.51
1271 1577 6.747280 GCACCATACAATTCTACACAATTGAC 59.253 38.462 13.59 0.00 43.70 3.18
1275 1581 5.260424 TGGCACCATACAATTCTACACAAT 58.740 37.500 0.00 0.00 0.00 2.71
1391 1697 4.565444 GCCAGGCCACTCCAATTTTATTTT 60.565 41.667 5.01 0.00 37.29 1.82
1457 1763 2.211353 TTGTTGGCCTACAAAAACGC 57.789 45.000 27.24 0.00 41.58 4.84
1513 1820 2.170260 ATTGAAACACTCGCGCCACG 62.170 55.000 0.00 0.00 45.62 4.94
1522 1829 4.074970 CCTCTACTGCCAATTGAAACACT 58.925 43.478 7.12 0.00 0.00 3.55
1544 1851 4.385405 ACTGTCCAGCTGCTCGGC 62.385 66.667 8.66 0.00 0.00 5.54
1545 1852 2.125753 GACTGTCCAGCTGCTCGG 60.126 66.667 8.66 10.66 0.00 4.63
1574 1881 2.487775 ACATGGTAAGGGCCATAGACA 58.512 47.619 6.18 0.42 46.71 3.41
1833 2142 6.967199 GGCTAATCCAACAATTAAAAGAGTCG 59.033 38.462 0.00 0.00 34.01 4.18
1923 2241 5.821470 CAGAGATGACACTTTGCCTCATTAT 59.179 40.000 0.00 0.00 0.00 1.28
2089 2416 8.924511 ACCTCATTTGTACATATCCCTTATTG 57.075 34.615 0.00 0.00 0.00 1.90
2093 2420 6.990349 CGTAACCTCATTTGTACATATCCCTT 59.010 38.462 0.00 0.00 0.00 3.95
2099 2426 5.421277 CCCACGTAACCTCATTTGTACATA 58.579 41.667 0.00 0.00 0.00 2.29
2118 2445 5.250200 TGTCACAACTTATGTAATCCCCAC 58.750 41.667 0.00 0.00 41.46 4.61
2190 2517 2.401766 CGGCAACTCAGGACATGGC 61.402 63.158 0.00 0.00 35.24 4.40
2313 2697 3.557595 GCTGTTTCCTATGAGATTCGTGG 59.442 47.826 0.00 0.00 0.00 4.94
2997 3592 2.151202 TCTTAAAAAGGCAGCTGACCG 58.849 47.619 18.28 3.08 0.00 4.79
3619 4498 9.893975 AAACAAGTACTGGGTATATACTATCCT 57.106 33.333 12.54 0.00 0.00 3.24
3677 4565 0.030638 CAAGCACTTCACCCAAACCG 59.969 55.000 0.00 0.00 0.00 4.44
3683 4571 2.087646 GAGAATCCAAGCACTTCACCC 58.912 52.381 0.00 0.00 0.00 4.61
3735 4623 3.629398 CACAAGGCTCAAGAATACCATCC 59.371 47.826 0.00 0.00 0.00 3.51
3944 4833 7.220030 ACGGAAGTGAATATTAGATGCAGATT 58.780 34.615 0.00 0.00 46.97 2.40
4325 5462 2.270275 TTGTCTGCAAACAAACACGG 57.730 45.000 2.34 0.00 36.25 4.94
4442 5579 9.289782 GGGTAACATCTGAATATAAGCAGATTT 57.710 33.333 14.59 13.92 46.65 2.17
4483 5620 5.321102 ACCTTCACACACCTGCATTTAATA 58.679 37.500 0.00 0.00 0.00 0.98
4484 5621 4.151883 ACCTTCACACACCTGCATTTAAT 58.848 39.130 0.00 0.00 0.00 1.40
4485 5622 3.561143 ACCTTCACACACCTGCATTTAA 58.439 40.909 0.00 0.00 0.00 1.52
4557 5694 0.179100 GTAAGCATCTCTCTGCCGCA 60.179 55.000 0.00 0.00 43.33 5.69
4648 5792 3.633525 ACAGCTTGTTGCAAGAATCTTCA 59.366 39.130 9.73 0.00 45.94 3.02
4798 5947 5.284079 AGACACTTGATGATTTGCAACAAC 58.716 37.500 0.00 0.00 34.78 3.32
4859 6008 3.367395 GCATTTCCCAACACTTTCCTAGC 60.367 47.826 0.00 0.00 0.00 3.42
4860 6009 3.826157 TGCATTTCCCAACACTTTCCTAG 59.174 43.478 0.00 0.00 0.00 3.02
4861 6010 3.838565 TGCATTTCCCAACACTTTCCTA 58.161 40.909 0.00 0.00 0.00 2.94
4863 6012 3.467374 TTGCATTTCCCAACACTTTCC 57.533 42.857 0.00 0.00 0.00 3.13
4866 6015 3.134442 ACACATTGCATTTCCCAACACTT 59.866 39.130 0.00 0.00 0.00 3.16
4867 6016 2.699846 ACACATTGCATTTCCCAACACT 59.300 40.909 0.00 0.00 0.00 3.55
4869 6018 3.834489 AACACATTGCATTTCCCAACA 57.166 38.095 0.00 0.00 0.00 3.33
4870 6019 4.125703 TGAAACACATTGCATTTCCCAAC 58.874 39.130 7.15 0.00 32.44 3.77
4871 6020 4.100653 TCTGAAACACATTGCATTTCCCAA 59.899 37.500 7.15 0.00 32.44 4.12
4872 6021 3.640498 TCTGAAACACATTGCATTTCCCA 59.360 39.130 7.15 0.00 32.44 4.37
4873 6022 4.255833 TCTGAAACACATTGCATTTCCC 57.744 40.909 7.15 0.00 32.44 3.97
4874 6023 5.472148 TCATCTGAAACACATTGCATTTCC 58.528 37.500 7.15 0.00 32.44 3.13
4875 6024 7.453034 CAATCATCTGAAACACATTGCATTTC 58.547 34.615 3.30 3.30 33.75 2.17
4876 6025 6.128391 GCAATCATCTGAAACACATTGCATTT 60.128 34.615 9.08 0.00 38.54 2.32
4877 6026 5.350365 GCAATCATCTGAAACACATTGCATT 59.650 36.000 9.08 0.00 38.54 3.56
4878 6027 4.868171 GCAATCATCTGAAACACATTGCAT 59.132 37.500 9.08 0.00 38.54 3.96
4879 6028 4.239304 GCAATCATCTGAAACACATTGCA 58.761 39.130 9.08 0.00 38.54 4.08
4880 6029 4.239304 TGCAATCATCTGAAACACATTGC 58.761 39.130 7.36 7.36 38.89 3.56
4881 6030 4.326278 GCTGCAATCATCTGAAACACATTG 59.674 41.667 0.00 0.00 0.00 2.82
4882 6031 4.021807 TGCTGCAATCATCTGAAACACATT 60.022 37.500 0.00 0.00 0.00 2.71
4883 6032 3.508402 TGCTGCAATCATCTGAAACACAT 59.492 39.130 0.00 0.00 0.00 3.21
4884 6033 2.885894 TGCTGCAATCATCTGAAACACA 59.114 40.909 0.00 0.00 0.00 3.72
4885 6034 3.564235 TGCTGCAATCATCTGAAACAC 57.436 42.857 0.00 0.00 0.00 3.32
4886 6035 4.587584 TTTGCTGCAATCATCTGAAACA 57.412 36.364 16.77 0.00 0.00 2.83
4887 6036 5.450376 CATTTGCTGCAATCATCTGAAAC 57.550 39.130 16.77 0.00 0.00 2.78
4926 6076 4.706962 CCTTAGGCAGCAAGAAAGGTTATT 59.293 41.667 0.00 0.00 33.50 1.40
4977 6128 3.944015 AGAAGAAAATCGGAATGAGCAGG 59.056 43.478 0.00 0.00 0.00 4.85
4987 6138 7.379797 GGTTCTTTTTCAGAAGAAGAAAATCGG 59.620 37.037 23.76 0.00 43.99 4.18
4988 6139 7.915397 TGGTTCTTTTTCAGAAGAAGAAAATCG 59.085 33.333 23.76 0.00 43.99 3.34
4989 6140 9.025020 GTGGTTCTTTTTCAGAAGAAGAAAATC 57.975 33.333 23.76 17.73 43.99 2.17
4991 6142 7.178451 AGGTGGTTCTTTTTCAGAAGAAGAAAA 59.822 33.333 23.76 15.46 43.99 2.29
4992 6143 6.663523 AGGTGGTTCTTTTTCAGAAGAAGAAA 59.336 34.615 23.76 11.66 43.99 2.52
4994 6145 5.590259 CAGGTGGTTCTTTTTCAGAAGAAGA 59.410 40.000 11.29 11.29 43.99 2.87
4996 6147 4.097892 GCAGGTGGTTCTTTTTCAGAAGAA 59.902 41.667 0.00 0.00 42.55 2.52
4997 6148 3.632145 GCAGGTGGTTCTTTTTCAGAAGA 59.368 43.478 0.00 0.00 42.55 2.87
4998 6149 3.633986 AGCAGGTGGTTCTTTTTCAGAAG 59.366 43.478 0.00 0.00 42.55 2.85
4999 6150 3.631250 AGCAGGTGGTTCTTTTTCAGAA 58.369 40.909 0.00 0.00 39.39 3.02
5000 6151 3.214328 GAGCAGGTGGTTCTTTTTCAGA 58.786 45.455 0.00 0.00 0.00 3.27
5001 6152 2.951642 TGAGCAGGTGGTTCTTTTTCAG 59.048 45.455 0.00 0.00 0.00 3.02
5002 6153 2.687935 GTGAGCAGGTGGTTCTTTTTCA 59.312 45.455 0.00 0.00 0.00 2.69
5003 6154 2.952310 AGTGAGCAGGTGGTTCTTTTTC 59.048 45.455 0.00 0.00 0.00 2.29
5004 6155 3.018423 AGTGAGCAGGTGGTTCTTTTT 57.982 42.857 0.00 0.00 0.00 1.94
5005 6156 2.736670 AGTGAGCAGGTGGTTCTTTT 57.263 45.000 0.00 0.00 0.00 2.27
5006 6157 3.857157 TTAGTGAGCAGGTGGTTCTTT 57.143 42.857 0.00 0.00 0.00 2.52
5007 6158 5.221843 TGTTATTAGTGAGCAGGTGGTTCTT 60.222 40.000 0.00 0.00 0.00 2.52
5008 6159 4.286032 TGTTATTAGTGAGCAGGTGGTTCT 59.714 41.667 0.00 0.00 0.00 3.01
5009 6160 4.575885 TGTTATTAGTGAGCAGGTGGTTC 58.424 43.478 0.00 0.00 0.00 3.62
5010 6161 4.634012 TGTTATTAGTGAGCAGGTGGTT 57.366 40.909 0.00 0.00 0.00 3.67
5011 6162 4.324267 GTTGTTATTAGTGAGCAGGTGGT 58.676 43.478 0.00 0.00 0.00 4.16
5012 6163 3.689649 GGTTGTTATTAGTGAGCAGGTGG 59.310 47.826 0.00 0.00 0.00 4.61
5013 6164 4.323417 TGGTTGTTATTAGTGAGCAGGTG 58.677 43.478 0.00 0.00 0.00 4.00
5014 6165 4.634012 TGGTTGTTATTAGTGAGCAGGT 57.366 40.909 0.00 0.00 0.00 4.00
5015 6166 6.037172 GTGTATGGTTGTTATTAGTGAGCAGG 59.963 42.308 0.00 0.00 0.00 4.85
5016 6167 6.593770 TGTGTATGGTTGTTATTAGTGAGCAG 59.406 38.462 0.00 0.00 0.00 4.24
5017 6168 6.468543 TGTGTATGGTTGTTATTAGTGAGCA 58.531 36.000 0.00 0.00 0.00 4.26
5018 6169 6.978343 TGTGTATGGTTGTTATTAGTGAGC 57.022 37.500 0.00 0.00 0.00 4.26
5024 6175 9.995957 CGATGAATTTGTGTATGGTTGTTATTA 57.004 29.630 0.00 0.00 0.00 0.98
5025 6176 8.735315 TCGATGAATTTGTGTATGGTTGTTATT 58.265 29.630 0.00 0.00 0.00 1.40
5026 6177 8.275015 TCGATGAATTTGTGTATGGTTGTTAT 57.725 30.769 0.00 0.00 0.00 1.89
5027 6178 7.674471 TCGATGAATTTGTGTATGGTTGTTA 57.326 32.000 0.00 0.00 0.00 2.41
5028 6179 6.567687 TCGATGAATTTGTGTATGGTTGTT 57.432 33.333 0.00 0.00 0.00 2.83
5029 6180 6.349280 CCTTCGATGAATTTGTGTATGGTTGT 60.349 38.462 0.00 0.00 0.00 3.32
5030 6181 6.029607 CCTTCGATGAATTTGTGTATGGTTG 58.970 40.000 0.00 0.00 0.00 3.77
5031 6182 5.710099 ACCTTCGATGAATTTGTGTATGGTT 59.290 36.000 0.00 0.00 0.00 3.67
5032 6183 5.253330 ACCTTCGATGAATTTGTGTATGGT 58.747 37.500 0.00 0.00 0.00 3.55
5033 6184 5.818136 ACCTTCGATGAATTTGTGTATGG 57.182 39.130 0.00 0.00 0.00 2.74
5142 6293 9.729281 ACGACTTATATTTTGGAAAAGAGGTAA 57.271 29.630 0.00 0.00 0.00 2.85
5143 6294 9.729281 AACGACTTATATTTTGGAAAAGAGGTA 57.271 29.630 0.00 0.00 0.00 3.08
5144 6295 8.512138 CAACGACTTATATTTTGGAAAAGAGGT 58.488 33.333 0.00 0.00 0.00 3.85
5145 6296 7.968405 CCAACGACTTATATTTTGGAAAAGAGG 59.032 37.037 0.00 0.00 39.33 3.69
5146 6297 7.968405 CCCAACGACTTATATTTTGGAAAAGAG 59.032 37.037 0.12 0.00 39.33 2.85
5147 6298 7.094118 CCCCAACGACTTATATTTTGGAAAAGA 60.094 37.037 0.12 0.00 39.33 2.52
5148 6299 7.033185 CCCCAACGACTTATATTTTGGAAAAG 58.967 38.462 0.12 0.00 39.33 2.27
5149 6300 6.071278 CCCCCAACGACTTATATTTTGGAAAA 60.071 38.462 0.12 0.00 39.33 2.29
5150 6301 5.419471 CCCCCAACGACTTATATTTTGGAAA 59.581 40.000 0.12 0.00 39.33 3.13
5151 6302 4.951094 CCCCCAACGACTTATATTTTGGAA 59.049 41.667 0.12 0.00 39.33 3.53
5152 6303 4.227754 TCCCCCAACGACTTATATTTTGGA 59.772 41.667 0.12 0.00 39.33 3.53
5153 6304 4.528920 TCCCCCAACGACTTATATTTTGG 58.471 43.478 0.00 0.00 37.13 3.28
5154 6305 5.190677 ACTCCCCCAACGACTTATATTTTG 58.809 41.667 0.00 0.00 0.00 2.44
5155 6306 5.446260 ACTCCCCCAACGACTTATATTTT 57.554 39.130 0.00 0.00 0.00 1.82
5156 6307 5.045432 TGAACTCCCCCAACGACTTATATTT 60.045 40.000 0.00 0.00 0.00 1.40
5157 6308 4.472108 TGAACTCCCCCAACGACTTATATT 59.528 41.667 0.00 0.00 0.00 1.28
5158 6309 4.035112 TGAACTCCCCCAACGACTTATAT 58.965 43.478 0.00 0.00 0.00 0.86
5159 6310 3.443052 TGAACTCCCCCAACGACTTATA 58.557 45.455 0.00 0.00 0.00 0.98
5160 6311 2.236395 CTGAACTCCCCCAACGACTTAT 59.764 50.000 0.00 0.00 0.00 1.73
5161 6312 1.621814 CTGAACTCCCCCAACGACTTA 59.378 52.381 0.00 0.00 0.00 2.24
5162 6313 0.396811 CTGAACTCCCCCAACGACTT 59.603 55.000 0.00 0.00 0.00 3.01
5163 6314 0.763223 ACTGAACTCCCCCAACGACT 60.763 55.000 0.00 0.00 0.00 4.18
5164 6315 0.108019 AACTGAACTCCCCCAACGAC 59.892 55.000 0.00 0.00 0.00 4.34
5165 6316 0.841289 AAACTGAACTCCCCCAACGA 59.159 50.000 0.00 0.00 0.00 3.85
5166 6317 2.148768 GTAAACTGAACTCCCCCAACG 58.851 52.381 0.00 0.00 0.00 4.10
5167 6318 2.882761 GTGTAAACTGAACTCCCCCAAC 59.117 50.000 0.00 0.00 0.00 3.77
5168 6319 2.781174 AGTGTAAACTGAACTCCCCCAA 59.219 45.455 0.00 0.00 0.00 4.12
5169 6320 2.370849 GAGTGTAAACTGAACTCCCCCA 59.629 50.000 0.00 0.00 35.36 4.96
5170 6321 3.055209 GAGTGTAAACTGAACTCCCCC 57.945 52.381 0.00 0.00 35.36 5.40
5174 6325 2.370849 TGGGGGAGTGTAAACTGAACTC 59.629 50.000 0.00 0.00 39.70 3.01
5175 6326 2.414612 TGGGGGAGTGTAAACTGAACT 58.585 47.619 0.00 0.00 0.00 3.01
5176 6327 2.882761 GTTGGGGGAGTGTAAACTGAAC 59.117 50.000 0.00 0.00 0.00 3.18
5177 6328 2.485835 CGTTGGGGGAGTGTAAACTGAA 60.486 50.000 0.00 0.00 0.00 3.02
5178 6329 1.071071 CGTTGGGGGAGTGTAAACTGA 59.929 52.381 0.00 0.00 0.00 3.41
5179 6330 1.071071 TCGTTGGGGGAGTGTAAACTG 59.929 52.381 0.00 0.00 0.00 3.16
5180 6331 1.071228 GTCGTTGGGGGAGTGTAAACT 59.929 52.381 0.00 0.00 0.00 2.66
5181 6332 1.071228 AGTCGTTGGGGGAGTGTAAAC 59.929 52.381 0.00 0.00 0.00 2.01
5182 6333 1.426751 AGTCGTTGGGGGAGTGTAAA 58.573 50.000 0.00 0.00 0.00 2.01
5183 6334 1.426751 AAGTCGTTGGGGGAGTGTAA 58.573 50.000 0.00 0.00 0.00 2.41
5184 6335 2.307496 TAAGTCGTTGGGGGAGTGTA 57.693 50.000 0.00 0.00 0.00 2.90
5185 6336 1.652947 ATAAGTCGTTGGGGGAGTGT 58.347 50.000 0.00 0.00 0.00 3.55
5186 6337 4.417426 AATATAAGTCGTTGGGGGAGTG 57.583 45.455 0.00 0.00 0.00 3.51
5187 6338 5.071384 CCTAAATATAAGTCGTTGGGGGAGT 59.929 44.000 0.00 0.00 0.00 3.85
5188 6339 5.306160 TCCTAAATATAAGTCGTTGGGGGAG 59.694 44.000 0.00 0.00 0.00 4.30
5189 6340 5.218179 TCCTAAATATAAGTCGTTGGGGGA 58.782 41.667 0.00 0.00 0.00 4.81
5190 6341 5.556006 TCCTAAATATAAGTCGTTGGGGG 57.444 43.478 0.00 0.00 0.00 5.40
5191 6342 5.464389 CGTTCCTAAATATAAGTCGTTGGGG 59.536 44.000 0.00 0.00 0.00 4.96
5192 6343 6.275335 TCGTTCCTAAATATAAGTCGTTGGG 58.725 40.000 0.00 0.00 0.00 4.12
5193 6344 7.042925 CCTTCGTTCCTAAATATAAGTCGTTGG 60.043 40.741 0.00 0.00 0.00 3.77
5194 6345 7.042925 CCCTTCGTTCCTAAATATAAGTCGTTG 60.043 40.741 0.00 0.00 0.00 4.10
5195 6346 6.982724 CCCTTCGTTCCTAAATATAAGTCGTT 59.017 38.462 0.00 0.00 0.00 3.85
5196 6347 6.322201 TCCCTTCGTTCCTAAATATAAGTCGT 59.678 38.462 0.00 0.00 0.00 4.34
5197 6348 6.742109 TCCCTTCGTTCCTAAATATAAGTCG 58.258 40.000 0.00 0.00 0.00 4.18
5198 6349 9.636879 GTATCCCTTCGTTCCTAAATATAAGTC 57.363 37.037 0.00 0.00 0.00 3.01
5199 6350 8.302438 CGTATCCCTTCGTTCCTAAATATAAGT 58.698 37.037 0.00 0.00 0.00 2.24
5200 6351 7.275123 GCGTATCCCTTCGTTCCTAAATATAAG 59.725 40.741 0.00 0.00 0.00 1.73
5201 6352 7.039504 AGCGTATCCCTTCGTTCCTAAATATAA 60.040 37.037 0.00 0.00 0.00 0.98
5202 6353 6.435277 AGCGTATCCCTTCGTTCCTAAATATA 59.565 38.462 0.00 0.00 0.00 0.86
5203 6354 5.245526 AGCGTATCCCTTCGTTCCTAAATAT 59.754 40.000 0.00 0.00 0.00 1.28
5204 6355 4.586001 AGCGTATCCCTTCGTTCCTAAATA 59.414 41.667 0.00 0.00 0.00 1.40
5205 6356 3.387050 AGCGTATCCCTTCGTTCCTAAAT 59.613 43.478 0.00 0.00 0.00 1.40
5206 6357 2.762327 AGCGTATCCCTTCGTTCCTAAA 59.238 45.455 0.00 0.00 0.00 1.85
5207 6358 2.381911 AGCGTATCCCTTCGTTCCTAA 58.618 47.619 0.00 0.00 0.00 2.69
5208 6359 2.062971 AGCGTATCCCTTCGTTCCTA 57.937 50.000 0.00 0.00 0.00 2.94
5209 6360 1.680207 GTAGCGTATCCCTTCGTTCCT 59.320 52.381 0.00 0.00 0.00 3.36
5210 6361 1.406539 TGTAGCGTATCCCTTCGTTCC 59.593 52.381 0.00 0.00 0.00 3.62
5211 6362 2.857592 TGTAGCGTATCCCTTCGTTC 57.142 50.000 0.00 0.00 0.00 3.95
5212 6363 2.802057 GCATGTAGCGTATCCCTTCGTT 60.802 50.000 0.00 0.00 0.00 3.85
5213 6364 1.269621 GCATGTAGCGTATCCCTTCGT 60.270 52.381 0.00 0.00 0.00 3.85
5214 6365 1.419374 GCATGTAGCGTATCCCTTCG 58.581 55.000 0.00 0.00 0.00 3.79
5225 6376 1.353103 GCACCGTCATGCATGTAGC 59.647 57.895 25.43 18.02 45.39 3.58
5232 6383 1.535462 ACAACTTAAGCACCGTCATGC 59.465 47.619 1.29 0.00 46.50 4.06
5233 6384 2.548057 ACACAACTTAAGCACCGTCATG 59.452 45.455 1.29 0.00 0.00 3.07
5234 6385 2.548057 CACACAACTTAAGCACCGTCAT 59.452 45.455 1.29 0.00 0.00 3.06
5235 6386 1.937223 CACACAACTTAAGCACCGTCA 59.063 47.619 1.29 0.00 0.00 4.35
5236 6387 1.333791 GCACACAACTTAAGCACCGTC 60.334 52.381 1.29 0.00 0.00 4.79
5237 6388 0.661020 GCACACAACTTAAGCACCGT 59.339 50.000 1.29 0.00 0.00 4.83
5238 6389 0.384230 CGCACACAACTTAAGCACCG 60.384 55.000 1.29 0.00 0.00 4.94
5239 6390 0.661020 ACGCACACAACTTAAGCACC 59.339 50.000 1.29 0.00 0.00 5.01
5240 6391 1.333791 GGACGCACACAACTTAAGCAC 60.334 52.381 1.29 0.00 0.00 4.40
5241 6392 0.941542 GGACGCACACAACTTAAGCA 59.058 50.000 1.29 0.00 0.00 3.91
5242 6393 0.110823 CGGACGCACACAACTTAAGC 60.111 55.000 1.29 0.00 0.00 3.09
5243 6394 1.191647 GACGGACGCACACAACTTAAG 59.808 52.381 0.00 0.00 0.00 1.85
5244 6395 1.202440 AGACGGACGCACACAACTTAA 60.202 47.619 0.00 0.00 0.00 1.85
5245 6396 0.386476 AGACGGACGCACACAACTTA 59.614 50.000 0.00 0.00 0.00 2.24
5246 6397 1.143183 AGACGGACGCACACAACTT 59.857 52.632 0.00 0.00 0.00 2.66
5247 6398 1.591594 CAGACGGACGCACACAACT 60.592 57.895 0.00 0.00 0.00 3.16
5248 6399 1.881252 ACAGACGGACGCACACAAC 60.881 57.895 0.00 0.00 0.00 3.32
5249 6400 1.880796 CACAGACGGACGCACACAA 60.881 57.895 0.00 0.00 0.00 3.33
5250 6401 2.279186 CACAGACGGACGCACACA 60.279 61.111 0.00 0.00 0.00 3.72
5251 6402 2.279252 ACACAGACGGACGCACAC 60.279 61.111 0.00 0.00 0.00 3.82
5252 6403 2.082629 ATCACACAGACGGACGCACA 62.083 55.000 0.00 0.00 0.00 4.57
5253 6404 0.109458 TATCACACAGACGGACGCAC 60.109 55.000 0.00 0.00 0.00 5.34
5254 6405 0.815095 ATATCACACAGACGGACGCA 59.185 50.000 0.00 0.00 0.00 5.24
5255 6406 1.200483 CATATCACACAGACGGACGC 58.800 55.000 0.00 0.00 0.00 5.19
5256 6407 1.840181 CCATATCACACAGACGGACG 58.160 55.000 0.00 0.00 0.00 4.79
5257 6408 1.137086 AGCCATATCACACAGACGGAC 59.863 52.381 0.00 0.00 0.00 4.79
5258 6409 1.485124 AGCCATATCACACAGACGGA 58.515 50.000 0.00 0.00 0.00 4.69
5259 6410 2.315925 AAGCCATATCACACAGACGG 57.684 50.000 0.00 0.00 0.00 4.79
5260 6411 4.682787 TCTAAAGCCATATCACACAGACG 58.317 43.478 0.00 0.00 0.00 4.18
5261 6412 4.509600 GCTCTAAAGCCATATCACACAGAC 59.490 45.833 0.00 0.00 43.10 3.51
5262 6413 4.697514 GCTCTAAAGCCATATCACACAGA 58.302 43.478 0.00 0.00 43.10 3.41
5303 6454 9.869757 ATGCAAAAGGTAGTTATTTTTACATCC 57.130 29.630 0.00 0.00 0.00 3.51
5346 6497 4.507710 TCTACATCATCTGTTGGAGCAAC 58.492 43.478 0.00 0.00 43.78 4.17
5347 6498 4.824479 TCTACATCATCTGTTGGAGCAA 57.176 40.909 0.00 0.00 39.39 3.91
5479 6635 0.961753 GAAAGAAGTGGCAGTTGGGG 59.038 55.000 13.24 0.00 0.00 4.96
5593 6749 2.264794 GGCATCGACGGTGGAGTT 59.735 61.111 10.65 0.00 0.00 3.01
5599 6755 3.771160 GGTCAGGGCATCGACGGT 61.771 66.667 0.00 0.00 32.74 4.83
5603 6759 1.383109 AGATGGGTCAGGGCATCGA 60.383 57.895 0.00 0.00 0.00 3.59
5606 6762 3.112205 GCGAGATGGGTCAGGGCAT 62.112 63.158 0.00 0.00 0.00 4.40
5674 6859 2.300197 GGGTGGGGCAAATTGGCAT 61.300 57.895 20.97 0.00 45.76 4.40
5725 6911 3.886550 CTTGGCGGCCCCCTTCTTT 62.887 63.158 17.97 0.00 0.00 2.52
5790 6976 4.966787 GACCTTGGTTGCCCGCCA 62.967 66.667 0.00 0.00 0.00 5.69
5864 7050 1.414181 GGATGAGGATGACATGGTCGT 59.586 52.381 0.00 0.00 34.95 4.34
5873 7059 2.796193 CGTGGCCGGATGAGGATGA 61.796 63.158 5.05 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.