Multiple sequence alignment - TraesCS5D01G266500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G266500 chr5D 100.000 7546 0 0 1 7546 370624331 370631876 0.000000e+00 13935.0
1 TraesCS5D01G266500 chr5D 100.000 187 0 0 7949 8135 370632279 370632465 6.040000e-91 346.0
2 TraesCS5D01G266500 chr5D 92.818 181 13 0 8 188 370597503 370597683 6.260000e-66 263.0
3 TraesCS5D01G266500 chr5D 88.298 188 15 6 7949 8133 370712213 370712396 1.370000e-52 219.0
4 TraesCS5D01G266500 chr5A 91.462 3221 201 28 4311 7506 473236860 473240031 0.000000e+00 4357.0
5 TraesCS5D01G266500 chr5A 94.248 2347 126 7 1954 4296 473234448 473236789 0.000000e+00 3578.0
6 TraesCS5D01G266500 chr5A 88.738 2939 238 30 4616 7506 473202111 473205004 0.000000e+00 3507.0
7 TraesCS5D01G266500 chr5A 89.430 2630 217 22 4616 7205 473098710 473101318 0.000000e+00 3260.0
8 TraesCS5D01G266500 chr5A 87.407 1207 91 34 2 1185 473194170 473195338 0.000000e+00 1330.0
9 TraesCS5D01G266500 chr5A 89.888 801 32 20 802 1589 473233050 473233814 0.000000e+00 985.0
10 TraesCS5D01G266500 chr5A 82.759 1044 105 39 178 1190 473091919 473092918 0.000000e+00 861.0
11 TraesCS5D01G266500 chr5A 96.091 307 12 0 1647 1953 473233820 473234126 1.220000e-137 501.0
12 TraesCS5D01G266500 chr5A 90.860 186 16 1 7949 8133 473205076 473205261 1.750000e-61 248.0
13 TraesCS5D01G266500 chr5A 89.005 191 14 3 7950 8133 473240104 473240294 6.350000e-56 230.0
14 TraesCS5D01G266500 chr5A 88.830 188 14 5 7949 8133 473299432 473299615 2.950000e-54 224.0
15 TraesCS5D01G266500 chr5A 83.658 257 12 9 7192 7444 473101334 473101564 1.780000e-51 215.0
16 TraesCS5D01G266500 chr5A 90.000 90 9 0 2 91 473091770 473091859 5.160000e-22 117.0
17 TraesCS5D01G266500 chr5A 94.340 53 1 2 691 742 473232970 473233021 6.770000e-11 80.5
18 TraesCS5D01G266500 chr5B 87.640 2937 238 48 4612 7506 439953174 439956027 0.000000e+00 3297.0
19 TraesCS5D01G266500 chr5B 82.899 1228 106 46 2 1190 439948154 439949316 0.000000e+00 1009.0
20 TraesCS5D01G266500 chr5B 87.234 188 17 6 7949 8133 439969346 439969529 2.980000e-49 207.0
21 TraesCS5D01G266500 chr5B 94.286 70 4 0 8064 8133 439958584 439958653 3.100000e-19 108.0
22 TraesCS5D01G266500 chr5B 90.909 77 6 1 7950 8025 439956100 439956176 1.440000e-17 102.0
23 TraesCS5D01G266500 chr2B 85.595 479 54 9 5266 5736 89710405 89710876 9.490000e-134 488.0
24 TraesCS5D01G266500 chr2A 84.418 507 65 10 5239 5736 58024800 58025301 3.410000e-133 486.0
25 TraesCS5D01G266500 chr2A 85.325 477 59 7 5266 5736 58020432 58020903 4.410000e-132 483.0
26 TraesCS5D01G266500 chr2A 84.696 477 62 7 5266 5736 58036679 58037150 4.450000e-127 466.0
27 TraesCS5D01G266500 chr2D 84.486 477 59 12 5266 5736 56679173 56679640 2.680000e-124 457.0
28 TraesCS5D01G266500 chr2D 80.769 390 63 11 2758 3141 10044731 10045114 2.220000e-75 294.0
29 TraesCS5D01G266500 chr1D 82.880 368 56 6 2758 3123 443034120 443034482 2.830000e-84 324.0
30 TraesCS5D01G266500 chr1D 80.977 389 65 9 2755 3137 86098543 86098928 4.770000e-77 300.0
31 TraesCS5D01G266500 chr3D 82.133 375 62 5 2760 3130 2690936 2691309 4.740000e-82 316.0
32 TraesCS5D01G266500 chr3D 77.016 496 95 11 3141 3621 2691369 2691860 4.840000e-67 267.0
33 TraesCS5D01G266500 chr7D 82.210 371 54 8 2762 3127 610587756 610587393 7.930000e-80 309.0
34 TraesCS5D01G266500 chr4B 81.491 389 54 18 2758 3137 496430404 496430783 3.690000e-78 303.0
35 TraesCS5D01G266500 chr4B 90.000 60 6 0 5798 5857 604149476 604149535 2.430000e-10 78.7
36 TraesCS5D01G266500 chr6D 81.600 375 54 15 2762 3130 47668564 47668929 6.170000e-76 296.0
37 TraesCS5D01G266500 chr7A 80.818 391 61 14 2759 3141 20654995 20655379 2.220000e-75 294.0
38 TraesCS5D01G266500 chrUn 91.379 58 3 1 4491 4548 81805533 81805588 2.430000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G266500 chr5D 370624331 370632465 8134 False 7140.500000 13935 100.000000 1 8135 2 chr5D.!!$F3 8134
1 TraesCS5D01G266500 chr5A 473202111 473205261 3150 False 1877.500000 3507 89.799000 4616 8133 2 chr5A.!!$F5 3517
2 TraesCS5D01G266500 chr5A 473098710 473101564 2854 False 1737.500000 3260 86.544000 4616 7444 2 chr5A.!!$F4 2828
3 TraesCS5D01G266500 chr5A 473232970 473240294 7324 False 1621.916667 4357 92.505667 691 8133 6 chr5A.!!$F6 7442
4 TraesCS5D01G266500 chr5A 473194170 473195338 1168 False 1330.000000 1330 87.407000 2 1185 1 chr5A.!!$F1 1183
5 TraesCS5D01G266500 chr5A 473091770 473092918 1148 False 489.000000 861 86.379500 2 1190 2 chr5A.!!$F3 1188
6 TraesCS5D01G266500 chr5B 439948154 439958653 10499 False 1129.000000 3297 88.933500 2 8133 4 chr5B.!!$F2 8131
7 TraesCS5D01G266500 chr2A 58020432 58025301 4869 False 484.500000 486 84.871500 5239 5736 2 chr2A.!!$F2 497
8 TraesCS5D01G266500 chr3D 2690936 2691860 924 False 291.500000 316 79.574500 2760 3621 2 chr3D.!!$F1 861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
754 769 0.968405 GGCCATCACACAACAACCAT 59.032 50.0 0.0 0.0 0.00 3.55 F
1313 1415 0.109723 GGTTGAGGTGGCTGTTGGTA 59.890 55.0 0.0 0.0 0.00 3.25 F
1608 1712 0.169672 CTTTCTCATGGCTGCGGTTG 59.830 55.0 0.0 0.0 0.00 3.77 F
2473 2898 0.250901 AACCTGCGGCTTCTGAATGT 60.251 50.0 0.0 0.0 0.00 2.71 F
3877 4368 0.032130 TCTGGATATTGACGAGCCGC 59.968 55.0 0.0 0.0 0.00 6.53 F
4370 4917 0.764890 TTGGGTGAGTGGAACCTCTG 59.235 55.0 0.0 0.0 37.80 3.35 F
5362 10694 0.035725 CACCAGAGATGGCTGCTCAA 60.036 55.0 0.0 0.0 34.85 3.02 F
5363 10695 0.252479 ACCAGAGATGGCTGCTCAAG 59.748 55.0 0.0 3.5 34.85 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1640 1744 0.034089 GAACATCAGGAAGGGGGTGG 60.034 60.000 0.00 0.00 0.00 4.61 R
2551 2976 0.317103 CATTCTCGTAGCCTCCGACG 60.317 60.000 0.00 0.00 40.74 5.12 R
3205 3683 0.318784 GGTGACCACAGTGAGACGAC 60.319 60.000 0.62 0.00 0.00 4.34 R
4164 4656 0.035056 AAACTGCCCTCGAGAATGGG 60.035 55.000 15.71 8.76 46.00 4.00 R
5022 9291 0.251653 AAGGTGAGGCTCGACCACTA 60.252 55.000 26.88 2.22 43.14 2.74 R
6001 11348 0.108520 CTGCAAATTTCCAGCGCCAT 60.109 50.000 2.29 0.00 0.00 4.40 R
7076 12430 0.178068 AACCTCATTCCCATCGTCCG 59.822 55.000 0.00 0.00 0.00 4.79 R
7347 12753 1.355720 AGCCCATTTAGGTCTTGCACT 59.644 47.619 0.00 0.00 34.66 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 7.420184 AACCAAAAGCTTATGTGCATTTAAC 57.580 32.000 0.00 0.00 33.04 2.01
101 102 2.287977 AACCTCTAGGGGTTGTTTGC 57.712 50.000 26.74 0.00 46.51 3.68
247 254 2.096496 TCGACGTCCGAAAGACCTAATC 59.904 50.000 10.58 0.00 45.43 1.75
260 267 9.208022 CGAAAGACCTAATCATGAAATAGCATA 57.792 33.333 0.00 0.00 0.00 3.14
281 288 2.778299 TGCTTGTAAGGTTCTCGCAAT 58.222 42.857 0.00 0.00 0.00 3.56
282 289 3.146066 TGCTTGTAAGGTTCTCGCAATT 58.854 40.909 0.00 0.00 0.00 2.32
290 297 3.977427 AGGTTCTCGCAATTTTCAAACC 58.023 40.909 0.00 0.00 35.92 3.27
297 304 3.619038 TCGCAATTTTCAAACCCAAACAC 59.381 39.130 0.00 0.00 0.00 3.32
342 350 7.300320 GCGATCTATAAAATGATGCATGTTCA 58.700 34.615 2.46 0.00 0.00 3.18
344 352 9.274065 CGATCTATAAAATGATGCATGTTCATG 57.726 33.333 2.46 8.26 34.14 3.07
351 359 2.291089 TGATGCATGTTCATGGTGGTCT 60.291 45.455 2.46 0.00 0.00 3.85
352 360 2.291209 TGCATGTTCATGGTGGTCTT 57.709 45.000 13.55 0.00 0.00 3.01
387 396 4.691860 TCTTAGCACCTTGTCTACGTAC 57.308 45.455 0.00 0.00 0.00 3.67
401 410 6.160684 TGTCTACGTACTTGCACACATAAAT 58.839 36.000 0.00 0.00 0.00 1.40
402 411 6.647481 TGTCTACGTACTTGCACACATAAATT 59.353 34.615 0.00 0.00 0.00 1.82
403 412 7.813627 TGTCTACGTACTTGCACACATAAATTA 59.186 33.333 0.00 0.00 0.00 1.40
519 529 4.160626 ACTTGGTAGGAAGAGTAGACATGC 59.839 45.833 0.00 0.00 0.00 4.06
520 530 3.708451 TGGTAGGAAGAGTAGACATGCA 58.292 45.455 0.00 0.00 0.00 3.96
521 531 4.290093 TGGTAGGAAGAGTAGACATGCAT 58.710 43.478 0.00 0.00 0.00 3.96
617 628 4.150804 GCAGGTTGTTGTTTCGTTTGAAAA 59.849 37.500 0.00 0.00 45.22 2.29
618 629 5.163903 GCAGGTTGTTGTTTCGTTTGAAAAT 60.164 36.000 0.00 0.00 45.22 1.82
620 631 7.412020 GCAGGTTGTTGTTTCGTTTGAAAATTA 60.412 33.333 0.00 0.00 45.22 1.40
621 632 8.436200 CAGGTTGTTGTTTCGTTTGAAAATTAA 58.564 29.630 0.00 0.00 45.22 1.40
622 633 8.436970 AGGTTGTTGTTTCGTTTGAAAATTAAC 58.563 29.630 0.00 0.95 45.22 2.01
623 634 8.221766 GGTTGTTGTTTCGTTTGAAAATTAACA 58.778 29.630 10.05 10.05 45.22 2.41
626 637 9.746711 TGTTGTTTCGTTTGAAAATTAACAATG 57.253 25.926 12.56 0.00 45.22 2.82
627 638 9.748100 GTTGTTTCGTTTGAAAATTAACAATGT 57.252 25.926 12.56 0.00 45.22 2.71
628 639 9.746711 TTGTTTCGTTTGAAAATTAACAATGTG 57.253 25.926 7.95 0.00 45.22 3.21
630 641 7.525688 TTCGTTTGAAAATTAACAATGTGCA 57.474 28.000 0.00 0.00 0.00 4.57
632 643 6.199908 TCGTTTGAAAATTAACAATGTGCAGG 59.800 34.615 0.00 0.00 0.00 4.85
633 644 5.921004 TTGAAAATTAACAATGTGCAGGC 57.079 34.783 0.00 0.00 0.00 4.85
665 676 6.292919 CCTCTTCGGTTCTTTTAGTGTCAAAG 60.293 42.308 0.00 0.00 33.22 2.77
666 677 4.806342 TCGGTTCTTTTAGTGTCAAAGC 57.194 40.909 0.00 0.00 32.17 3.51
747 762 2.006805 TCAAATGGGCCATCACACAA 57.993 45.000 21.48 0.00 0.00 3.33
749 764 1.343789 CAAATGGGCCATCACACAACA 59.656 47.619 21.48 0.00 0.00 3.33
753 768 1.112315 GGGCCATCACACAACAACCA 61.112 55.000 4.39 0.00 0.00 3.67
754 769 0.968405 GGCCATCACACAACAACCAT 59.032 50.000 0.00 0.00 0.00 3.55
756 771 1.888512 GCCATCACACAACAACCATCT 59.111 47.619 0.00 0.00 0.00 2.90
764 779 6.041511 TCACACAACAACCATCTCAAAAATG 58.958 36.000 0.00 0.00 0.00 2.32
871 909 3.316573 GACAGGGCCCGAGACAAGG 62.317 68.421 18.44 2.15 0.00 3.61
902 940 3.118775 ACTCAAAAGTCAAAAACCCCAGC 60.119 43.478 0.00 0.00 0.00 4.85
960 1011 4.807039 CCCCGCCGTCCGTTACTG 62.807 72.222 0.00 0.00 34.38 2.74
1076 1137 4.717313 GTCGGCCAACCCCCTCAC 62.717 72.222 2.24 0.00 0.00 3.51
1124 1188 0.955428 TCCAAATCTGAGGTGCGTGC 60.955 55.000 0.00 0.00 0.00 5.34
1125 1189 1.133253 CAAATCTGAGGTGCGTGCG 59.867 57.895 0.00 0.00 0.00 5.34
1161 1225 0.941463 CCATCTCGAGCGAAATCGGG 60.941 60.000 7.81 2.47 44.71 5.14
1230 1332 2.366435 GTGGATCCTTCCCGGGGA 60.366 66.667 23.50 12.99 41.83 4.81
1298 1400 1.545582 ACTGCCCAATTCAATCGGTTG 59.454 47.619 0.70 0.70 36.65 3.77
1306 1408 0.400213 TTCAATCGGTTGAGGTGGCT 59.600 50.000 11.58 0.00 44.62 4.75
1307 1409 0.321564 TCAATCGGTTGAGGTGGCTG 60.322 55.000 7.11 0.00 39.36 4.85
1309 1411 0.110486 AATCGGTTGAGGTGGCTGTT 59.890 50.000 0.00 0.00 0.00 3.16
1312 1414 1.152756 GGTTGAGGTGGCTGTTGGT 60.153 57.895 0.00 0.00 0.00 3.67
1313 1415 0.109723 GGTTGAGGTGGCTGTTGGTA 59.890 55.000 0.00 0.00 0.00 3.25
1314 1416 1.235724 GTTGAGGTGGCTGTTGGTAC 58.764 55.000 0.00 0.00 0.00 3.34
1315 1417 0.840617 TTGAGGTGGCTGTTGGTACA 59.159 50.000 0.00 0.00 0.00 2.90
1316 1418 1.064003 TGAGGTGGCTGTTGGTACAT 58.936 50.000 0.00 0.00 39.30 2.29
1317 1419 1.003118 TGAGGTGGCTGTTGGTACATC 59.997 52.381 0.00 0.00 39.30 3.06
1336 1438 2.420890 GATCCCGAGGAGCTGCAG 59.579 66.667 10.11 10.11 34.95 4.41
1337 1439 3.160047 ATCCCGAGGAGCTGCAGG 61.160 66.667 17.12 10.43 34.05 4.85
1424 1526 0.745845 GGGCGACAACAGATGCTCAT 60.746 55.000 0.00 0.00 0.00 2.90
1468 1570 4.162690 GGTAGAGGGGCACTGGCG 62.163 72.222 0.00 0.00 42.47 5.69
1512 1614 0.322975 TCTCCTGTCAGAAGCTTGGC 59.677 55.000 2.10 0.00 0.00 4.52
1597 1701 2.611225 GAGGATCGTGCCTTTCTCAT 57.389 50.000 0.00 0.00 38.73 2.90
1598 1702 2.208431 GAGGATCGTGCCTTTCTCATG 58.792 52.381 0.00 0.00 38.73 3.07
1599 1703 1.134280 AGGATCGTGCCTTTCTCATGG 60.134 52.381 0.00 0.00 33.46 3.66
1605 1709 2.768492 GCCTTTCTCATGGCTGCGG 61.768 63.158 0.00 0.00 45.26 5.69
1606 1710 1.377725 CCTTTCTCATGGCTGCGGT 60.378 57.895 0.00 0.00 0.00 5.68
1607 1711 0.962356 CCTTTCTCATGGCTGCGGTT 60.962 55.000 0.00 0.00 0.00 4.44
1608 1712 0.169672 CTTTCTCATGGCTGCGGTTG 59.830 55.000 0.00 0.00 0.00 3.77
1609 1713 1.243342 TTTCTCATGGCTGCGGTTGG 61.243 55.000 0.00 0.00 0.00 3.77
1611 1715 2.359850 TCATGGCTGCGGTTGGAC 60.360 61.111 0.00 0.00 0.00 4.02
1612 1716 2.672651 CATGGCTGCGGTTGGACA 60.673 61.111 0.00 0.00 0.00 4.02
1613 1717 2.360350 ATGGCTGCGGTTGGACAG 60.360 61.111 0.00 0.00 36.96 3.51
1618 1722 2.031012 TGCGGTTGGACAGCTCAG 59.969 61.111 4.94 0.00 40.02 3.35
1619 1723 2.743928 GCGGTTGGACAGCTCAGG 60.744 66.667 0.00 0.00 36.37 3.86
1620 1724 2.743928 CGGTTGGACAGCTCAGGC 60.744 66.667 0.00 0.00 39.06 4.85
1623 1727 4.704833 TTGGACAGCTCAGGCGCC 62.705 66.667 21.89 21.89 44.37 6.53
1626 1730 4.385405 GACAGCTCAGGCGCCACT 62.385 66.667 31.54 17.32 44.37 4.00
1627 1731 3.890936 GACAGCTCAGGCGCCACTT 62.891 63.158 31.54 4.59 44.37 3.16
1628 1732 3.429141 CAGCTCAGGCGCCACTTG 61.429 66.667 31.54 19.07 44.37 3.16
1629 1733 4.711949 AGCTCAGGCGCCACTTGG 62.712 66.667 31.54 14.45 44.37 3.61
1640 1744 1.225704 CCACTTGGCATCTCCCCTC 59.774 63.158 0.00 0.00 0.00 4.30
1641 1745 1.225704 CACTTGGCATCTCCCCTCC 59.774 63.158 0.00 0.00 0.00 4.30
1643 1747 1.225704 CTTGGCATCTCCCCTCCAC 59.774 63.158 0.00 0.00 0.00 4.02
1644 1748 2.276309 CTTGGCATCTCCCCTCCACC 62.276 65.000 0.00 0.00 0.00 4.61
1645 1749 3.493303 GGCATCTCCCCTCCACCC 61.493 72.222 0.00 0.00 0.00 4.61
1661 1765 0.995024 ACCCCCTTCCTGATGTTCAG 59.005 55.000 0.00 0.00 43.91 3.02
1674 1778 2.084610 TGTTCAGTTCAGCAGATCCG 57.915 50.000 0.00 0.00 0.00 4.18
1732 1836 2.930019 CCACCCTCCTGTCAGCCA 60.930 66.667 0.00 0.00 0.00 4.75
1747 1851 3.083349 CCATCGCAGTGGGAGGGA 61.083 66.667 30.84 1.76 46.79 4.20
1833 1937 1.686464 GCTTTCGCCAACAAGTTAGC 58.314 50.000 0.00 0.00 0.00 3.09
1879 1983 3.737266 CACGCAATCAAAGTGCATTCTTT 59.263 39.130 0.00 0.00 42.33 2.52
2042 2467 6.449698 TGCCTCTGATCTTTTTGTCAATTTC 58.550 36.000 0.00 0.00 0.00 2.17
2161 2586 0.909623 TTAGGCCTACCCTTGAGCAC 59.090 55.000 13.46 0.00 43.06 4.40
2275 2700 9.880064 CATCATCTTGATCAAATATGTTCTCAC 57.120 33.333 21.25 0.00 34.28 3.51
2314 2739 9.890629 TTACCATATGCTATCATTTGATCTACC 57.109 33.333 0.00 0.00 34.77 3.18
2395 2820 1.264288 GGAAGAAAAGCGTGGACACTG 59.736 52.381 0.56 0.00 0.00 3.66
2473 2898 0.250901 AACCTGCGGCTTCTGAATGT 60.251 50.000 0.00 0.00 0.00 2.71
2494 2919 0.540923 GCTCTCAGAATCAGGTGGCT 59.459 55.000 0.00 0.00 0.00 4.75
2551 2976 5.388111 GCAAGGTTTTACCGTTAATGTCTC 58.612 41.667 0.00 0.00 44.90 3.36
2632 3057 3.144506 CTGCAAAGTTCTGGACAGACAT 58.855 45.455 0.67 0.00 37.14 3.06
2643 3068 3.281158 TGGACAGACATATGGTTGCATG 58.719 45.455 7.80 0.00 0.00 4.06
2648 3073 2.174210 AGACATATGGTTGCATGGCTCT 59.826 45.455 7.80 0.00 35.54 4.09
2690 3115 7.344095 ACCAGATCTTTTTGATTCATCATCC 57.656 36.000 0.00 0.00 36.56 3.51
2696 3121 6.937392 TCTTTTTGATTCATCATCCATTGCA 58.063 32.000 0.00 0.00 36.56 4.08
2722 3147 1.687123 GAAGCTATCTGGTAAGGCGGA 59.313 52.381 0.00 0.00 0.00 5.54
2731 3156 1.120530 GGTAAGGCGGATCTTCTCCA 58.879 55.000 0.00 0.00 45.24 3.86
2732 3157 1.069358 GGTAAGGCGGATCTTCTCCAG 59.931 57.143 0.00 0.00 45.24 3.86
2754 3179 3.732048 ATGCATGGATCATAGGCATCA 57.268 42.857 13.43 1.44 40.96 3.07
2756 3181 2.290705 TGCATGGATCATAGGCATCAGG 60.291 50.000 4.69 0.00 0.00 3.86
2757 3182 2.366533 CATGGATCATAGGCATCAGGC 58.633 52.381 0.00 0.00 43.74 4.85
2801 3227 7.811117 TTATATTATAAAGCAACGGCCAACT 57.189 32.000 2.24 0.00 42.56 3.16
2813 3239 2.093869 ACGGCCAACTACACGATACAAT 60.094 45.455 2.24 0.00 0.00 2.71
2855 3282 4.006989 ACAACCAAGCCCAAAAGAAAAAC 58.993 39.130 0.00 0.00 0.00 2.43
2904 3332 2.238521 ACACCGGCAGATCAACAAAAT 58.761 42.857 0.00 0.00 0.00 1.82
2969 3397 3.205784 GCTCCTAGCACTCCAAATCAT 57.794 47.619 0.00 0.00 41.89 2.45
2996 3424 2.224523 ACCGAGCATGACCTTCAAGAAA 60.225 45.455 0.00 0.00 0.00 2.52
3093 3521 1.125633 GTATACCCGAGGCCCTTCAA 58.874 55.000 0.00 0.00 0.00 2.69
3111 3539 2.032681 GAAGGAACGGCAGCACCT 59.967 61.111 0.00 0.00 35.61 4.00
3205 3683 1.070445 GATCATGGCACCCTCCTCG 59.930 63.158 0.00 0.00 0.00 4.63
3228 3706 0.541998 TCTCACTGTGGTCACCGGAT 60.542 55.000 9.46 0.00 0.00 4.18
3230 3708 1.757118 CTCACTGTGGTCACCGGATAT 59.243 52.381 9.46 0.00 0.00 1.63
3234 3712 2.569853 ACTGTGGTCACCGGATATGAAA 59.430 45.455 9.46 0.00 0.00 2.69
3264 3742 0.618968 AGAGGAGGGGACAGCGAAAT 60.619 55.000 0.00 0.00 0.00 2.17
3267 3745 1.515954 GAGGGGACAGCGAAATCGA 59.484 57.895 7.06 0.00 43.02 3.59
3276 3754 1.391485 CAGCGAAATCGAGGACAACAG 59.609 52.381 7.06 0.00 43.02 3.16
3284 3762 1.771073 CGAGGACAACAGCAACGCAA 61.771 55.000 0.00 0.00 0.00 4.85
3422 3903 3.268603 CCACGCTGCAACACGACA 61.269 61.111 10.07 0.00 0.00 4.35
3475 3956 2.923035 ACACCACCTCCACCTCCG 60.923 66.667 0.00 0.00 0.00 4.63
3487 3968 4.113815 CCTCCGGGGAGCATTGCA 62.114 66.667 0.37 0.00 40.69 4.08
3492 3973 2.345760 CGGGGAGCATTGCAGCTTT 61.346 57.895 11.91 0.00 46.75 3.51
3629 4119 4.101448 ATGACCACCTGAGCCGGC 62.101 66.667 21.89 21.89 0.00 6.13
3710 4201 4.741239 GGTGGCAGGGGAGAGGGA 62.741 72.222 0.00 0.00 0.00 4.20
3735 4226 2.275748 GGGGGCTAGGGTTTGCTC 59.724 66.667 0.00 0.00 0.00 4.26
3739 4230 1.295423 GGCTAGGGTTTGCTCGTCA 59.705 57.895 0.00 0.00 0.00 4.35
3743 4234 0.320374 TAGGGTTTGCTCGTCACCTG 59.680 55.000 0.00 0.00 0.00 4.00
3829 4320 2.158842 AGGCATCAAGGGAGATTTCTCG 60.159 50.000 1.67 0.00 43.76 4.04
3834 4325 1.065854 CAAGGGAGATTTCTCGGCTGT 60.066 52.381 1.67 0.00 43.76 4.40
3842 4333 3.133542 AGATTTCTCGGCTGTGATGATCA 59.866 43.478 17.01 0.00 0.00 2.92
3871 4362 4.051237 TCTGCGAATTCTGGATATTGACG 58.949 43.478 3.52 0.00 0.00 4.35
3877 4368 0.032130 TCTGGATATTGACGAGCCGC 59.968 55.000 0.00 0.00 0.00 6.53
3944 4435 1.617357 GGACGGAGAGTGGTGTTTACT 59.383 52.381 0.00 0.00 0.00 2.24
3956 4447 1.677052 GTGTTTACTCCGGCCAAAACA 59.323 47.619 18.29 18.29 38.97 2.83
3976 4467 2.024414 AGGATACAGGGCATTTTTCGC 58.976 47.619 0.00 0.00 41.41 4.70
3984 4475 2.438954 GCATTTTTCGCTGCTGCCG 61.439 57.895 10.24 5.61 35.49 5.69
4032 4523 2.676076 GCACCATTGCGTCTGAAATTT 58.324 42.857 0.00 0.00 39.50 1.82
4057 4548 2.287788 GGTTGGCTCGCCATTCATAATG 60.288 50.000 12.00 0.00 46.64 1.90
4118 4609 3.011517 CCCTACTGCCTGCACCCT 61.012 66.667 0.00 0.00 0.00 4.34
4119 4610 2.586792 CCTACTGCCTGCACCCTC 59.413 66.667 0.00 0.00 0.00 4.30
4164 4656 6.513393 CGATAAACCACCTTCTTATCCAATGC 60.513 42.308 0.00 0.00 31.22 3.56
4184 4676 1.614317 CCCATTCTCGAGGGCAGTTTT 60.614 52.381 13.56 0.00 38.44 2.43
4197 4689 3.595173 GGCAGTTTTGTTTCAGGTGTTT 58.405 40.909 0.00 0.00 0.00 2.83
4316 4808 8.706322 AAAAAGGGACACTAAGTGAATAACAT 57.294 30.769 0.00 0.00 36.96 2.71
4370 4917 0.764890 TTGGGTGAGTGGAACCTCTG 59.235 55.000 0.00 0.00 37.80 3.35
4389 4936 1.077787 GGTCCATGCGTGGGATCAA 60.078 57.895 24.78 1.73 46.06 2.57
4438 4986 4.092675 GCAACAGAGAAACTAGTGATCAGC 59.907 45.833 0.00 0.00 0.00 4.26
4450 4998 4.333913 AGTGATCAGCAGCTATTAGTGG 57.666 45.455 0.00 0.00 0.00 4.00
4658 8912 2.710220 TGACGAAACTTAGTAGCGCA 57.290 45.000 11.47 0.00 0.00 6.09
4670 8924 6.631962 ACTTAGTAGCGCAGAGAACTTTATT 58.368 36.000 11.47 0.00 0.00 1.40
4789 9058 2.164219 GCTTCTTTTGATTCGATGCCCA 59.836 45.455 0.00 0.00 0.00 5.36
4894 9163 9.086059 TCCCTATTCCTCAGTATCCTAGATATT 57.914 37.037 0.00 0.00 0.00 1.28
5022 9291 2.711009 TCCCTTCTGTTCCTGAACACAT 59.289 45.455 8.58 0.00 45.42 3.21
5164 9433 6.851609 TGTCAATGCATGGTATAAAACTCAC 58.148 36.000 0.00 0.00 0.00 3.51
5170 9439 6.179756 TGCATGGTATAAAACTCACACATCT 58.820 36.000 0.00 0.00 0.00 2.90
5245 10571 9.696917 GTTCCTTTTCAGTTTTCACATATCATT 57.303 29.630 0.00 0.00 0.00 2.57
5325 10657 3.646162 ACACTGTGAGTTAACCCTGATGA 59.354 43.478 15.86 0.00 0.00 2.92
5362 10694 0.035725 CACCAGAGATGGCTGCTCAA 60.036 55.000 0.00 0.00 34.85 3.02
5363 10695 0.252479 ACCAGAGATGGCTGCTCAAG 59.748 55.000 0.00 3.50 34.85 3.02
5602 10944 9.774742 CTGAAACACCTAATGCTTAGTTTATTC 57.225 33.333 0.00 0.00 30.23 1.75
5635 10980 5.997843 TGGATTGCTGGATCATATAGATGG 58.002 41.667 0.00 0.00 37.00 3.51
5748 11093 2.945668 ACTGCAGTCACCTTTTCAAGTC 59.054 45.455 15.25 0.00 0.00 3.01
5783 11130 8.698973 TTCAAAAGGTTAGATAAACATGACCA 57.301 30.769 0.00 0.00 40.08 4.02
5785 11132 8.160765 TCAAAAGGTTAGATAAACATGACCAGA 58.839 33.333 0.00 0.00 40.08 3.86
5786 11133 8.960591 CAAAAGGTTAGATAAACATGACCAGAT 58.039 33.333 0.00 0.00 40.08 2.90
5787 11134 8.511604 AAAGGTTAGATAAACATGACCAGATG 57.488 34.615 0.00 0.00 40.08 2.90
5788 11135 7.437713 AGGTTAGATAAACATGACCAGATGA 57.562 36.000 0.00 0.00 40.08 2.92
5789 11136 7.275920 AGGTTAGATAAACATGACCAGATGAC 58.724 38.462 0.00 0.00 40.08 3.06
5790 11137 6.483640 GGTTAGATAAACATGACCAGATGACC 59.516 42.308 0.00 0.00 40.08 4.02
5791 11138 5.965033 AGATAAACATGACCAGATGACCT 57.035 39.130 0.00 0.00 0.00 3.85
5792 11139 6.319048 AGATAAACATGACCAGATGACCTT 57.681 37.500 0.00 0.00 0.00 3.50
5802 11149 4.202441 ACCAGATGACCTTGATATTGTGC 58.798 43.478 0.00 0.00 0.00 4.57
5871 11218 6.061022 TGCATAGTAGAGGACCAATTTGAA 57.939 37.500 0.00 0.00 0.00 2.69
5989 11336 3.549827 CGCCACAGCTGTACAATTTTTCA 60.550 43.478 21.20 0.00 36.60 2.69
6001 11348 1.544724 ATTTTTCAGGCAGCCGCTAA 58.455 45.000 5.55 0.00 38.60 3.09
6043 11390 4.218417 GCAGGAGCTAAAATTTGAGGTTGA 59.782 41.667 8.66 0.00 37.91 3.18
6046 11393 4.522789 GGAGCTAAAATTTGAGGTTGACCA 59.477 41.667 8.66 0.00 38.89 4.02
6121 11468 1.002315 CCCAAATGCCCCAAAAGACAG 59.998 52.381 0.00 0.00 0.00 3.51
6146 11493 3.857549 TTGCACTGCTGTTGTTTTACA 57.142 38.095 1.98 0.00 0.00 2.41
6150 11497 3.730715 GCACTGCTGTTGTTTTACATCAC 59.269 43.478 0.00 0.00 0.00 3.06
6156 11503 7.089770 TGCTGTTGTTTTACATCACTTGTTA 57.910 32.000 0.00 0.00 39.87 2.41
6159 11506 7.913297 GCTGTTGTTTTACATCACTTGTTAGAA 59.087 33.333 0.00 0.00 39.87 2.10
6164 11511 7.865385 TGTTTTACATCACTTGTTAGAAATGCC 59.135 33.333 0.00 0.00 39.87 4.40
6169 11516 6.375455 ACATCACTTGTTAGAAATGCCCTTAG 59.625 38.462 0.00 0.00 33.74 2.18
6173 11520 8.107095 TCACTTGTTAGAAATGCCCTTAGTTAT 58.893 33.333 0.00 0.00 0.00 1.89
6197 11546 5.632959 TGTAATAAGGTGTTATGTTTGCGC 58.367 37.500 0.00 0.00 0.00 6.09
6216 11565 3.723097 TTTGCGGTGGTTGCAGGGA 62.723 57.895 0.00 0.00 44.28 4.20
6227 11576 1.001974 GTTGCAGGGAATTTGGGGTTC 59.998 52.381 0.00 0.00 0.00 3.62
6245 11594 5.111293 GGGTTCCTTCATGCAATATTTGTG 58.889 41.667 0.00 0.00 0.00 3.33
6249 11598 5.015515 TCCTTCATGCAATATTTGTGGACA 58.984 37.500 0.00 0.00 0.00 4.02
6257 11606 5.363292 TGCAATATTTGTGGACAATATGCCT 59.637 36.000 12.68 0.00 35.55 4.75
6317 11671 5.491982 TGACTTCTTTTCCTCTTCTATGCC 58.508 41.667 0.00 0.00 0.00 4.40
6318 11672 5.249393 TGACTTCTTTTCCTCTTCTATGCCT 59.751 40.000 0.00 0.00 0.00 4.75
6341 11695 4.524328 TCTGAGTGCTGAGTTGACTATTGA 59.476 41.667 0.00 0.00 0.00 2.57
6409 11763 3.402691 ATGAGCGACGACGAGCTGG 62.403 63.158 22.49 0.00 44.69 4.85
6775 12129 2.930950 CTTCCGCTTTTATGGGGATCA 58.069 47.619 0.00 0.00 46.20 2.92
6793 12147 4.212847 GGATCAATCACGATGATGTCCAAG 59.787 45.833 14.83 0.00 37.15 3.61
6857 12211 3.191581 TCCAAGTCTTTGCAACGTTTGAA 59.808 39.130 17.68 0.00 32.79 2.69
6882 12236 3.491652 GCGTTGAAGGAGCGGCTC 61.492 66.667 21.57 21.57 0.00 4.70
6939 12293 4.709690 GGTTCCCCAACCCAAACA 57.290 55.556 0.00 0.00 46.01 2.83
6962 12316 4.020218 ACAGGAGTTGGATCGAAGAATTGA 60.020 41.667 0.00 0.00 43.58 2.57
6969 12323 3.960755 TGGATCGAAGAATTGAGGAGCTA 59.039 43.478 0.00 0.00 43.58 3.32
6994 12348 0.673022 GATGGCCGGAGAGATGCATC 60.673 60.000 19.37 19.37 0.00 3.91
7034 12388 1.545582 CAAAGGATGCATCGGTTGGTT 59.454 47.619 23.56 9.84 0.00 3.67
7045 12399 0.727970 CGGTTGGTTTGTGTTCGTCA 59.272 50.000 0.00 0.00 0.00 4.35
7118 12484 2.435693 GCTCCCCAGCAGTATCGGT 61.436 63.158 0.00 0.00 46.06 4.69
7173 12543 6.839124 TGCACCAGTTTAGATTCATCAATT 57.161 33.333 0.00 0.00 0.00 2.32
7241 12640 2.629617 CTGCTTTTGGACTTGGATGGTT 59.370 45.455 0.00 0.00 0.00 3.67
7248 12647 5.885449 TTGGACTTGGATGGTTTGATTTT 57.115 34.783 0.00 0.00 0.00 1.82
7254 12653 3.855668 TGGATGGTTTGATTTTGGGACT 58.144 40.909 0.00 0.00 0.00 3.85
7255 12654 3.831911 TGGATGGTTTGATTTTGGGACTC 59.168 43.478 0.00 0.00 0.00 3.36
7256 12655 4.089361 GGATGGTTTGATTTTGGGACTCT 58.911 43.478 0.00 0.00 0.00 3.24
7279 12680 2.742372 GTGGCGCCGTGAACTCAT 60.742 61.111 23.90 0.00 0.00 2.90
7280 12681 2.741985 TGGCGCCGTGAACTCATG 60.742 61.111 23.90 0.00 0.00 3.07
7281 12682 2.742372 GGCGCCGTGAACTCATGT 60.742 61.111 12.58 0.00 0.00 3.21
7282 12683 2.325082 GGCGCCGTGAACTCATGTT 61.325 57.895 12.58 0.00 39.42 2.71
7283 12684 1.154413 GCGCCGTGAACTCATGTTG 60.154 57.895 0.00 0.00 36.39 3.33
7284 12685 1.841663 GCGCCGTGAACTCATGTTGT 61.842 55.000 0.00 0.00 36.39 3.32
7285 12686 0.586319 CGCCGTGAACTCATGTTGTT 59.414 50.000 6.57 6.57 36.39 2.83
7286 12687 1.795872 CGCCGTGAACTCATGTTGTTA 59.204 47.619 6.79 0.00 36.39 2.41
7287 12688 2.415168 CGCCGTGAACTCATGTTGTTAT 59.585 45.455 6.79 0.00 36.39 1.89
7288 12689 3.120338 CGCCGTGAACTCATGTTGTTATT 60.120 43.478 6.79 0.00 36.39 1.40
7289 12690 4.158384 GCCGTGAACTCATGTTGTTATTG 58.842 43.478 6.79 1.70 36.39 1.90
7290 12691 4.320202 GCCGTGAACTCATGTTGTTATTGT 60.320 41.667 6.79 0.00 36.39 2.71
7291 12692 5.106869 GCCGTGAACTCATGTTGTTATTGTA 60.107 40.000 6.79 0.00 36.39 2.41
7292 12693 6.566942 GCCGTGAACTCATGTTGTTATTGTAA 60.567 38.462 6.79 0.00 36.39 2.41
7293 12694 7.526608 CCGTGAACTCATGTTGTTATTGTAAT 58.473 34.615 6.79 0.00 36.39 1.89
7294 12695 7.692291 CCGTGAACTCATGTTGTTATTGTAATC 59.308 37.037 6.79 0.00 36.39 1.75
7295 12696 8.443160 CGTGAACTCATGTTGTTATTGTAATCT 58.557 33.333 6.79 0.00 36.39 2.40
7296 12697 9.760660 GTGAACTCATGTTGTTATTGTAATCTC 57.239 33.333 6.79 0.00 36.39 2.75
7297 12698 9.500785 TGAACTCATGTTGTTATTGTAATCTCA 57.499 29.630 6.79 0.00 36.39 3.27
7298 12699 9.979270 GAACTCATGTTGTTATTGTAATCTCAG 57.021 33.333 6.79 0.00 36.39 3.35
7299 12700 9.725019 AACTCATGTTGTTATTGTAATCTCAGA 57.275 29.630 5.35 0.00 34.71 3.27
7300 12701 9.155975 ACTCATGTTGTTATTGTAATCTCAGAC 57.844 33.333 0.00 0.00 0.00 3.51
7301 12702 8.185003 TCATGTTGTTATTGTAATCTCAGACG 57.815 34.615 0.00 0.00 0.00 4.18
7302 12703 7.817478 TCATGTTGTTATTGTAATCTCAGACGT 59.183 33.333 0.00 0.00 0.00 4.34
7424 12830 6.545567 TGAGACATATATGGCAAATGGTGAT 58.454 36.000 20.76 0.00 38.64 3.06
7425 12831 6.431852 TGAGACATATATGGCAAATGGTGATG 59.568 38.462 20.76 0.00 38.64 3.07
7426 12832 6.545567 AGACATATATGGCAAATGGTGATGA 58.454 36.000 20.76 0.00 38.64 2.92
7435 12851 5.010922 TGGCAAATGGTGATGATAATTAGCC 59.989 40.000 0.00 0.00 36.50 3.93
7497 12913 7.603784 TGTAATCATGTATATGTCTGGCATGTC 59.396 37.037 4.74 0.00 38.47 3.06
7527 12961 6.224420 ACGCATTCAGTTTTCTAGTTACAC 57.776 37.500 0.00 0.00 0.00 2.90
7531 12965 7.244192 GCATTCAGTTTTCTAGTTACACCATC 58.756 38.462 0.00 0.00 0.00 3.51
7532 12966 7.094805 GCATTCAGTTTTCTAGTTACACCATCA 60.095 37.037 0.00 0.00 0.00 3.07
7533 12967 7.724305 TTCAGTTTTCTAGTTACACCATCAC 57.276 36.000 0.00 0.00 0.00 3.06
7535 12969 6.929049 TCAGTTTTCTAGTTACACCATCACTG 59.071 38.462 0.00 0.00 0.00 3.66
7969 13403 1.967779 TCACACTCGATGGAAACCTGA 59.032 47.619 0.00 0.00 0.00 3.86
7972 13406 4.221924 TCACACTCGATGGAAACCTGAATA 59.778 41.667 0.00 0.00 0.00 1.75
7987 13421 5.605534 ACCTGAATATCAAAGTCATCTCCG 58.394 41.667 0.00 0.00 0.00 4.63
8030 13468 7.375106 GGTTTTCCTTAGTTAACTCCTTAGC 57.625 40.000 12.39 0.00 36.94 3.09
8048 13490 5.295292 CCTTAGCATTGTTGATACTGTCCTG 59.705 44.000 0.00 0.00 0.00 3.86
8069 15876 1.037579 GCCAGGTATGCCCAAGGAAC 61.038 60.000 7.61 0.00 33.62 3.62
8133 15940 1.947597 CTCTGCTGCCTTCTCTCGCT 61.948 60.000 0.00 0.00 0.00 4.93
8134 15941 1.810441 CTGCTGCCTTCTCTCGCTG 60.810 63.158 0.00 0.00 0.00 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.581934 TGCAAGCCACATATCTACGC 58.418 50.000 0.00 0.00 0.00 4.42
84 85 0.676782 CCGCAAACAACCCCTAGAGG 60.677 60.000 0.00 0.00 0.00 3.69
237 244 8.954350 GCATATGCTATTTCATGATTAGGTCTT 58.046 33.333 20.64 2.30 38.21 3.01
260 267 2.472695 TGCGAGAACCTTACAAGCAT 57.527 45.000 0.00 0.00 0.00 3.79
281 288 2.743636 TGCGTGTTTGGGTTTGAAAA 57.256 40.000 0.00 0.00 0.00 2.29
282 289 2.028930 ACTTGCGTGTTTGGGTTTGAAA 60.029 40.909 0.00 0.00 0.00 2.69
342 350 6.590656 TGGATATAGGAAAAAGACCACCAT 57.409 37.500 0.00 0.00 0.00 3.55
344 352 6.842676 AGATGGATATAGGAAAAAGACCACC 58.157 40.000 0.00 0.00 0.00 4.61
351 359 8.045720 AGGTGCTAAGATGGATATAGGAAAAA 57.954 34.615 0.00 0.00 0.00 1.94
352 360 7.633018 AGGTGCTAAGATGGATATAGGAAAA 57.367 36.000 0.00 0.00 0.00 2.29
401 410 7.798714 CCTAACCAGGCCACTTATTAGTGTTAA 60.799 40.741 5.01 0.00 40.64 2.01
402 411 6.352394 CCTAACCAGGCCACTTATTAGTGTTA 60.352 42.308 5.01 1.73 40.64 2.41
403 412 5.572885 CCTAACCAGGCCACTTATTAGTGTT 60.573 44.000 5.01 0.68 40.64 3.32
521 531 9.567776 TCAAATACATGTCTCAGGACTTAAAAA 57.432 29.630 0.00 0.00 42.54 1.94
617 628 3.685756 GCAATTGCCTGCACATTGTTAAT 59.314 39.130 20.06 0.00 42.17 1.40
618 629 3.065655 GCAATTGCCTGCACATTGTTAA 58.934 40.909 20.06 0.00 42.17 2.01
620 631 1.515081 GCAATTGCCTGCACATTGTT 58.485 45.000 20.06 0.67 42.17 2.83
621 632 3.220447 GCAATTGCCTGCACATTGT 57.780 47.368 20.06 0.00 42.17 2.71
632 643 0.171231 GAACCGAAGAGGGCAATTGC 59.829 55.000 22.47 22.47 46.96 3.56
633 644 1.826385 AGAACCGAAGAGGGCAATTG 58.174 50.000 0.00 0.00 46.96 2.32
753 768 8.108364 TGGCCCATTTTATTTCATTTTTGAGAT 58.892 29.630 0.00 0.00 0.00 2.75
754 769 7.456725 TGGCCCATTTTATTTCATTTTTGAGA 58.543 30.769 0.00 0.00 0.00 3.27
756 771 7.338957 GGATGGCCCATTTTATTTCATTTTTGA 59.661 33.333 0.00 0.00 34.14 2.69
871 909 1.000145 GACTTTTGAGTCGATCGGCC 59.000 55.000 17.57 8.69 0.00 6.13
953 1004 1.554042 GCGTGTCCACACCAGTAACG 61.554 60.000 4.25 0.00 43.66 3.18
991 1049 2.593725 CATGCTCATCCCCGCCTG 60.594 66.667 0.00 0.00 0.00 4.85
992 1050 4.575973 GCATGCTCATCCCCGCCT 62.576 66.667 11.37 0.00 0.00 5.52
1125 1189 1.216444 GGGGGTTAAGTCGGACGAC 59.784 63.158 16.39 16.39 44.86 4.34
1230 1332 3.548014 CCAGCGAGAAACGAACAACAAAT 60.548 43.478 0.00 0.00 45.77 2.32
1298 1400 1.739067 GATGTACCAACAGCCACCTC 58.261 55.000 0.00 0.00 39.49 3.85
1390 1492 2.432628 CCCACGACCTCAGCGTTC 60.433 66.667 0.00 0.00 40.44 3.95
1410 1512 3.341823 GAGGTTGATGAGCATCTGTTGT 58.658 45.455 11.37 0.00 38.60 3.32
1424 1526 1.812686 CGAACGGGAGTGGAGGTTGA 61.813 60.000 0.00 0.00 46.69 3.18
1458 1560 2.045926 AAGACATCGCCAGTGCCC 60.046 61.111 0.00 0.00 0.00 5.36
1468 1570 3.373439 GTGAGCACAATGGAGAAGACATC 59.627 47.826 0.00 0.00 0.00 3.06
1512 1614 2.657237 GGGTGTGGTCTCTGTCCG 59.343 66.667 0.00 0.00 0.00 4.79
1589 1693 0.169672 CAACCGCAGCCATGAGAAAG 59.830 55.000 0.00 0.00 0.00 2.62
1593 1697 2.046023 TCCAACCGCAGCCATGAG 60.046 61.111 0.00 0.00 0.00 2.90
1594 1698 2.359850 GTCCAACCGCAGCCATGA 60.360 61.111 0.00 0.00 0.00 3.07
1595 1699 2.672651 TGTCCAACCGCAGCCATG 60.673 61.111 0.00 0.00 0.00 3.66
1596 1700 2.360350 CTGTCCAACCGCAGCCAT 60.360 61.111 0.00 0.00 0.00 4.40
1600 1704 2.031012 TGAGCTGTCCAACCGCAG 59.969 61.111 0.00 0.00 30.30 5.18
1603 1707 2.743928 GCCTGAGCTGTCCAACCG 60.744 66.667 0.00 0.00 35.50 4.44
1605 1709 3.426568 GCGCCTGAGCTGTCCAAC 61.427 66.667 0.00 0.00 36.60 3.77
1606 1710 4.704833 GGCGCCTGAGCTGTCCAA 62.705 66.667 22.15 0.00 36.60 3.53
1609 1713 3.890936 AAGTGGCGCCTGAGCTGTC 62.891 63.158 29.70 7.57 36.60 3.51
1611 1715 3.429141 CAAGTGGCGCCTGAGCTG 61.429 66.667 29.70 13.61 36.60 4.24
1612 1716 4.711949 CCAAGTGGCGCCTGAGCT 62.712 66.667 29.70 16.99 36.60 4.09
1623 1727 1.225704 GGAGGGGAGATGCCAAGTG 59.774 63.158 0.00 0.00 38.95 3.16
1625 1729 1.225704 GTGGAGGGGAGATGCCAAG 59.774 63.158 0.00 0.00 38.95 3.61
1626 1730 2.308722 GGTGGAGGGGAGATGCCAA 61.309 63.158 0.00 0.00 38.95 4.52
1627 1731 2.692368 GGTGGAGGGGAGATGCCA 60.692 66.667 0.00 0.00 38.95 4.92
1628 1732 3.493303 GGGTGGAGGGGAGATGCC 61.493 72.222 0.00 0.00 0.00 4.40
1629 1733 3.493303 GGGGTGGAGGGGAGATGC 61.493 72.222 0.00 0.00 0.00 3.91
1630 1734 2.774351 GGGGGTGGAGGGGAGATG 60.774 72.222 0.00 0.00 0.00 2.90
1631 1735 2.569373 GAAGGGGGTGGAGGGGAGAT 62.569 65.000 0.00 0.00 0.00 2.75
1635 1739 4.371231 AGGAAGGGGGTGGAGGGG 62.371 72.222 0.00 0.00 0.00 4.79
1636 1740 2.865183 ATCAGGAAGGGGGTGGAGGG 62.865 65.000 0.00 0.00 0.00 4.30
1637 1741 1.308216 ATCAGGAAGGGGGTGGAGG 60.308 63.158 0.00 0.00 0.00 4.30
1638 1742 0.916358 ACATCAGGAAGGGGGTGGAG 60.916 60.000 0.00 0.00 0.00 3.86
1640 1744 0.034089 GAACATCAGGAAGGGGGTGG 60.034 60.000 0.00 0.00 0.00 4.61
1641 1745 0.698238 TGAACATCAGGAAGGGGGTG 59.302 55.000 0.00 0.00 0.00 4.61
1643 1747 3.890527 CTGAACATCAGGAAGGGGG 57.109 57.895 0.00 0.00 40.71 5.40
1661 1765 2.167861 GGCGACGGATCTGCTGAAC 61.168 63.158 0.00 0.00 0.00 3.18
1732 1836 3.474570 GCTCCCTCCCACTGCGAT 61.475 66.667 0.00 0.00 0.00 4.58
1747 1851 3.134623 TGAAATCAGTGATATCCACCGCT 59.865 43.478 5.94 0.00 46.87 5.52
1833 1937 5.065731 GGGATAAGCTGATCAAGTTTCAGTG 59.934 44.000 13.34 0.00 42.12 3.66
1925 2029 5.107875 CCTGCTTTCGATGCAAAGTTTTTAC 60.108 40.000 13.33 0.00 40.13 2.01
2161 2586 1.407437 CCTCTTTCCTCAATGGTCCCG 60.407 57.143 0.00 0.00 37.07 5.14
2250 2675 9.623000 TGTGAGAACATATTTGATCAAGATGAT 57.377 29.630 26.85 19.89 40.34 2.45
2266 2691 3.748083 ACTGATGTTGCTGTGAGAACAT 58.252 40.909 0.00 0.00 43.82 2.71
2275 2700 5.066893 AGCATATGGTAAACTGATGTTGCTG 59.933 40.000 5.40 0.00 36.39 4.41
2473 2898 1.339438 GCCACCTGATTCTGAGAGCAA 60.339 52.381 0.00 0.00 0.00 3.91
2494 2919 0.618458 GTCAATCCTGGCCTACCACA 59.382 55.000 3.32 0.00 42.67 4.17
2551 2976 0.317103 CATTCTCGTAGCCTCCGACG 60.317 60.000 0.00 0.00 40.74 5.12
2632 3057 2.797837 GCAGAGCCATGCAACCATA 58.202 52.632 5.90 0.00 45.77 2.74
2690 3115 3.432592 CAGATAGCTTCCTCGATGCAATG 59.567 47.826 0.00 0.00 35.57 2.82
2696 3121 3.829601 CCTTACCAGATAGCTTCCTCGAT 59.170 47.826 0.00 0.00 0.00 3.59
2722 3147 4.104261 TGATCCATGCATTCTGGAGAAGAT 59.896 41.667 12.81 0.00 45.64 2.40
2731 3156 3.801307 TGCCTATGATCCATGCATTCT 57.199 42.857 0.00 0.00 0.00 2.40
2732 3157 4.014406 TGATGCCTATGATCCATGCATTC 58.986 43.478 0.00 0.00 42.33 2.67
2801 3227 4.808895 CCAGCAAGCTTATTGTATCGTGTA 59.191 41.667 0.00 0.00 0.00 2.90
2813 3239 1.220749 CTACGCCCCAGCAAGCTTA 59.779 57.895 0.00 0.00 39.83 3.09
2855 3282 4.775058 TGTTTCTCTCTTCTTCCTCTCG 57.225 45.455 0.00 0.00 0.00 4.04
2897 3324 4.022329 GGTTCCGGTCATCTTCATTTTGTT 60.022 41.667 0.00 0.00 0.00 2.83
2904 3332 1.001974 CAGTGGTTCCGGTCATCTTCA 59.998 52.381 0.00 0.00 0.00 3.02
2983 3411 3.560068 GTCGCTTTCTTTCTTGAAGGTCA 59.440 43.478 0.00 0.00 35.98 4.02
3046 3474 1.379443 ACTGCCCTCCGTGTATCGA 60.379 57.895 0.00 0.00 42.86 3.59
3093 3521 2.032681 GGTGCTGCCGTTCCTTCT 59.967 61.111 0.00 0.00 0.00 2.85
3205 3683 0.318784 GGTGACCACAGTGAGACGAC 60.319 60.000 0.62 0.00 0.00 4.34
3228 3706 5.900123 CCTCCTCTTTCCTCTAGGTTTCATA 59.100 44.000 0.00 0.00 36.34 2.15
3230 3708 4.097418 CCTCCTCTTTCCTCTAGGTTTCA 58.903 47.826 0.00 0.00 36.34 2.69
3234 3712 1.292546 CCCCTCCTCTTTCCTCTAGGT 59.707 57.143 0.00 0.00 36.34 3.08
3264 3742 1.954146 GCGTTGCTGTTGTCCTCGA 60.954 57.895 0.00 0.00 0.00 4.04
3267 3745 1.724582 GGTTGCGTTGCTGTTGTCCT 61.725 55.000 0.00 0.00 0.00 3.85
3276 3754 4.622456 CCCACACGGTTGCGTTGC 62.622 66.667 0.00 0.00 0.00 4.17
3284 3762 2.073716 TTGTTCCCTCCCACACGGT 61.074 57.895 0.00 0.00 0.00 4.83
3404 3885 4.666532 GTCGTGTTGCAGCGTGGC 62.667 66.667 0.00 0.00 0.00 5.01
3446 3927 3.542676 TGGTGTGTCGGCGGTCTT 61.543 61.111 7.21 0.00 0.00 3.01
3458 3939 2.923035 CGGAGGTGGAGGTGGTGT 60.923 66.667 0.00 0.00 0.00 4.16
3475 3956 1.217244 CAAAGCTGCAATGCTCCCC 59.783 57.895 6.82 0.00 43.24 4.81
3487 3968 0.528249 CGGCTGTTTGTTGCAAAGCT 60.528 50.000 17.17 0.00 34.29 3.74
3490 3971 1.520342 GCCGGCTGTTTGTTGCAAA 60.520 52.632 22.15 0.00 0.00 3.68
3492 3973 3.910490 GGCCGGCTGTTTGTTGCA 61.910 61.111 28.56 0.00 0.00 4.08
3532 4013 4.598894 CCTGCTCGGCCCAGATCG 62.599 72.222 0.00 0.00 32.03 3.69
3563 4053 4.562425 CAGTGTGGTGGTGCGGGT 62.562 66.667 0.00 0.00 0.00 5.28
3609 4099 2.710902 CGGCTCAGGTGGTCATCGA 61.711 63.158 0.00 0.00 0.00 3.59
3698 4189 2.449322 CCCCATCCCTCTCCCCTG 60.449 72.222 0.00 0.00 0.00 4.45
3735 4226 4.373116 CGTCCCCCACAGGTGACG 62.373 72.222 2.82 2.82 46.06 4.35
3792 4283 1.815003 CCTGCGATCCGTGCAATCA 60.815 57.895 0.00 0.00 42.70 2.57
3799 4290 1.522355 CTTGATGCCTGCGATCCGT 60.522 57.895 0.00 0.00 0.00 4.69
3829 4320 5.520632 CAGAATTGAATGATCATCACAGCC 58.479 41.667 9.06 6.05 34.96 4.85
3834 4325 6.628919 ATTCGCAGAATTGAATGATCATCA 57.371 33.333 9.06 6.23 45.90 3.07
3842 4333 7.756395 ATATCCAGAATTCGCAGAATTGAAT 57.244 32.000 17.26 9.75 45.90 2.57
3907 4398 2.416836 CGTCCAGATCCAGCGAAAACTA 60.417 50.000 0.00 0.00 0.00 2.24
3908 4399 1.673033 CGTCCAGATCCAGCGAAAACT 60.673 52.381 0.00 0.00 0.00 2.66
3914 4405 2.069465 CTCTCCGTCCAGATCCAGCG 62.069 65.000 0.00 0.00 0.00 5.18
3944 4435 0.693622 TGTATCCTGTTTTGGCCGGA 59.306 50.000 5.05 0.00 0.00 5.14
3956 4447 2.024414 GCGAAAAATGCCCTGTATCCT 58.976 47.619 0.00 0.00 0.00 3.24
4057 4548 1.021390 CGATCAGCTGTCCAACACCC 61.021 60.000 14.67 0.00 0.00 4.61
4084 4575 3.403558 GTGGGGGAGCCCTCTGTC 61.404 72.222 7.03 0.00 44.66 3.51
4118 4609 2.125552 CCGGCGCTTGATCACAGA 60.126 61.111 7.64 0.00 0.00 3.41
4119 4610 2.125552 TCCGGCGCTTGATCACAG 60.126 61.111 7.64 0.00 0.00 3.66
4130 4622 1.140161 TGGTTTATCGTCTCCGGCG 59.860 57.895 0.00 0.00 33.95 6.46
4141 4633 5.598417 GGCATTGGATAAGAAGGTGGTTTAT 59.402 40.000 0.00 0.00 0.00 1.40
4164 4656 0.035056 AAACTGCCCTCGAGAATGGG 60.035 55.000 15.71 8.76 46.00 4.00
4184 4676 5.941058 TCAAGTTGTCTAAACACCTGAAACA 59.059 36.000 2.11 0.00 34.35 2.83
4197 4689 3.568007 GCACCACCAAATCAAGTTGTCTA 59.432 43.478 2.11 0.00 0.00 2.59
4247 4739 2.470938 GAACCTGCTCCCACCAGTCC 62.471 65.000 0.00 0.00 0.00 3.85
4296 4788 5.163652 GGCAATGTTATTCACTTAGTGTCCC 60.164 44.000 12.41 0.00 34.79 4.46
4297 4789 5.447279 CGGCAATGTTATTCACTTAGTGTCC 60.447 44.000 12.41 0.00 34.79 4.02
4299 4791 4.142687 GCGGCAATGTTATTCACTTAGTGT 60.143 41.667 12.41 0.00 34.79 3.55
4300 4792 4.342772 GCGGCAATGTTATTCACTTAGTG 58.657 43.478 5.94 5.94 34.45 2.74
4301 4793 3.377172 GGCGGCAATGTTATTCACTTAGT 59.623 43.478 3.07 0.00 0.00 2.24
4302 4794 3.376859 TGGCGGCAATGTTATTCACTTAG 59.623 43.478 10.22 0.00 0.00 2.18
4304 4796 2.166829 TGGCGGCAATGTTATTCACTT 58.833 42.857 10.22 0.00 0.00 3.16
4306 4798 2.859538 CAATGGCGGCAATGTTATTCAC 59.140 45.455 18.31 0.00 0.00 3.18
4307 4799 2.757314 TCAATGGCGGCAATGTTATTCA 59.243 40.909 24.35 3.45 0.00 2.57
4308 4800 3.435105 TCAATGGCGGCAATGTTATTC 57.565 42.857 24.35 0.00 0.00 1.75
4309 4801 3.520569 GTTCAATGGCGGCAATGTTATT 58.479 40.909 24.35 7.16 0.00 1.40
4310 4802 2.159114 GGTTCAATGGCGGCAATGTTAT 60.159 45.455 24.35 0.29 0.00 1.89
4311 4803 1.203523 GGTTCAATGGCGGCAATGTTA 59.796 47.619 24.35 12.57 0.00 2.41
4312 4804 0.037419 GGTTCAATGGCGGCAATGTT 60.037 50.000 24.35 8.68 0.00 2.71
4313 4805 0.899717 AGGTTCAATGGCGGCAATGT 60.900 50.000 24.35 7.12 0.00 2.71
4314 4806 0.458889 CAGGTTCAATGGCGGCAATG 60.459 55.000 20.23 20.23 0.00 2.82
4315 4807 1.892338 CAGGTTCAATGGCGGCAAT 59.108 52.632 18.31 4.06 0.00 3.56
4316 4808 2.929903 GCAGGTTCAATGGCGGCAA 61.930 57.895 18.31 0.00 0.00 4.52
4389 4936 3.967987 CCCTTTGCCTACTCCTACTGTAT 59.032 47.826 0.00 0.00 0.00 2.29
4438 4986 1.938577 CAGCACTGCCACTAATAGCTG 59.061 52.381 0.00 0.00 41.45 4.24
4450 4998 3.900855 CTGATCCACCAGCACTGC 58.099 61.111 0.00 0.00 0.00 4.40
4487 5035 9.926751 GGAAAAACAGTACAAAGTAGAGTTTAC 57.073 33.333 0.00 0.00 0.00 2.01
4598 5146 3.186909 TCATTTCTCGCGAATGGTACTG 58.813 45.455 11.33 1.87 0.00 2.74
4603 5151 3.063861 TGATGTTCATTTCTCGCGAATGG 59.936 43.478 11.33 0.00 0.00 3.16
4606 5154 3.120338 GGTTGATGTTCATTTCTCGCGAA 60.120 43.478 11.33 0.00 0.00 4.70
4733 8999 5.221925 ACTGCTGATCCTGAAAGTTCCTTTA 60.222 40.000 0.00 0.00 33.49 1.85
4789 9058 4.706962 GCCTGGAAGTGTTGATAAAGGAAT 59.293 41.667 0.00 0.00 0.00 3.01
5022 9291 0.251653 AAGGTGAGGCTCGACCACTA 60.252 55.000 26.88 2.22 43.14 2.74
5204 9473 2.582052 AGGAACATGACCGAGCAAAAA 58.418 42.857 0.00 0.00 0.00 1.94
5245 10571 7.612065 ACCATACCTAAACATGCTACTGATA 57.388 36.000 0.00 0.00 0.00 2.15
5325 10657 3.222603 GGTGGACCTGAAACAAATGTCT 58.777 45.455 0.00 0.00 0.00 3.41
5362 10694 3.290710 TGAACTTTGAGGCAAGAAAGCT 58.709 40.909 0.00 0.00 33.25 3.74
5363 10695 3.715628 TGAACTTTGAGGCAAGAAAGC 57.284 42.857 0.00 0.00 33.25 3.51
5397 10730 4.411256 TCTGGTCCATTTTCCGGTATAC 57.589 45.455 0.00 0.00 0.00 1.47
5402 10735 2.489938 TCTTCTGGTCCATTTTCCGG 57.510 50.000 0.00 0.00 0.00 5.14
5602 10944 1.452651 AGCAATCCATCCTGGCACG 60.453 57.895 0.00 0.00 37.47 5.34
5635 10980 9.504708 AGGATCTCATTTCATCATCATAAAGAC 57.495 33.333 0.00 0.00 0.00 3.01
5766 11113 7.275920 AGGTCATCTGGTCATGTTTATCTAAC 58.724 38.462 0.00 0.00 37.26 2.34
5783 11130 4.880120 CACAGCACAATATCAAGGTCATCT 59.120 41.667 0.00 0.00 0.00 2.90
5785 11132 3.379372 GCACAGCACAATATCAAGGTCAT 59.621 43.478 0.00 0.00 0.00 3.06
5786 11133 2.749076 GCACAGCACAATATCAAGGTCA 59.251 45.455 0.00 0.00 0.00 4.02
5787 11134 2.223112 CGCACAGCACAATATCAAGGTC 60.223 50.000 0.00 0.00 0.00 3.85
5788 11135 1.739466 CGCACAGCACAATATCAAGGT 59.261 47.619 0.00 0.00 0.00 3.50
5789 11136 1.739466 ACGCACAGCACAATATCAAGG 59.261 47.619 0.00 0.00 0.00 3.61
5790 11137 2.160219 ACACGCACAGCACAATATCAAG 59.840 45.455 0.00 0.00 0.00 3.02
5791 11138 2.095819 CACACGCACAGCACAATATCAA 60.096 45.455 0.00 0.00 0.00 2.57
5792 11139 1.464219 CACACGCACAGCACAATATCA 59.536 47.619 0.00 0.00 0.00 2.15
5802 11149 0.665835 TTAAAAGCCCACACGCACAG 59.334 50.000 0.00 0.00 0.00 3.66
5871 11218 2.508526 ACAGGACCGAACTAAGTACGT 58.491 47.619 0.00 0.00 0.00 3.57
6001 11348 0.108520 CTGCAAATTTCCAGCGCCAT 60.109 50.000 2.29 0.00 0.00 4.40
6100 11447 0.324614 GTCTTTTGGGGCATTTGGGG 59.675 55.000 0.00 0.00 0.00 4.96
6104 11451 4.502105 AAAACTGTCTTTTGGGGCATTT 57.498 36.364 0.00 0.00 0.00 2.32
6137 11484 9.243637 GCATTTCTAACAAGTGATGTAAAACAA 57.756 29.630 0.00 0.00 42.99 2.83
6146 11493 6.485171 ACTAAGGGCATTTCTAACAAGTGAT 58.515 36.000 0.00 0.00 0.00 3.06
6150 11497 8.739972 ACAATAACTAAGGGCATTTCTAACAAG 58.260 33.333 0.00 0.00 0.00 3.16
6159 11506 9.131791 CACCTTATTACAATAACTAAGGGCATT 57.868 33.333 10.90 0.00 42.92 3.56
6173 11520 6.072397 AGCGCAAACATAACACCTTATTACAA 60.072 34.615 11.47 0.00 0.00 2.41
6197 11546 2.336088 CCTGCAACCACCGCAAAG 59.664 61.111 0.00 0.00 39.30 2.77
6216 11565 2.618794 TGCATGAAGGAACCCCAAATT 58.381 42.857 0.00 0.00 33.88 1.82
6227 11576 5.327616 TGTCCACAAATATTGCATGAAGG 57.672 39.130 0.00 0.00 0.00 3.46
6245 11594 6.303839 TCTTATAAACCCAGGCATATTGTCC 58.696 40.000 0.00 0.00 0.00 4.02
6305 11659 2.224018 GCACTCAGAGGCATAGAAGAGG 60.224 54.545 1.53 0.00 0.00 3.69
6315 11669 0.319728 TCAACTCAGCACTCAGAGGC 59.680 55.000 1.53 2.60 36.20 4.70
6317 11671 4.717233 ATAGTCAACTCAGCACTCAGAG 57.283 45.455 0.00 0.00 37.87 3.35
6318 11672 4.524328 TCAATAGTCAACTCAGCACTCAGA 59.476 41.667 0.00 0.00 0.00 3.27
6341 11695 0.465705 AATGATGGGATCAGCGTCGT 59.534 50.000 0.00 0.00 43.53 4.34
6384 11738 1.424240 GTCGTCGCTCATGACTCGA 59.576 57.895 10.30 10.30 37.96 4.04
6409 11763 1.589716 GACAACCAGCCATCACCTGC 61.590 60.000 0.00 0.00 0.00 4.85
6775 12129 3.198635 AGACCTTGGACATCATCGTGATT 59.801 43.478 0.00 0.00 34.28 2.57
6857 12211 2.357517 CCTTCAACGCGTGCTCCT 60.358 61.111 14.98 0.00 0.00 3.69
6882 12236 4.393834 TCTTCTCTATCTCCGTGATCAGG 58.606 47.826 8.47 8.47 36.65 3.86
6889 12243 3.117474 TCCACCATCTTCTCTATCTCCGT 60.117 47.826 0.00 0.00 0.00 4.69
6939 12293 4.020218 TCAATTCTTCGATCCAACTCCTGT 60.020 41.667 0.00 0.00 0.00 4.00
6974 12328 1.126329 ATGCATCTCTCCGGCCATCT 61.126 55.000 2.24 0.00 0.00 2.90
6977 12331 2.824546 GATGCATCTCTCCGGCCA 59.175 61.111 19.70 0.00 0.00 5.36
6981 12335 1.066152 TGAAGTCGATGCATCTCTCCG 59.934 52.381 23.73 11.50 0.00 4.63
6994 12348 1.028330 ACAGCATGGGCATGAAGTCG 61.028 55.000 0.00 0.00 43.62 4.18
7022 12376 1.766069 GAACACAAACCAACCGATGC 58.234 50.000 0.00 0.00 0.00 3.91
7045 12399 3.349006 CTGCTGCGCCTCGTTTGT 61.349 61.111 4.18 0.00 0.00 2.83
7076 12430 0.178068 AACCTCATTCCCATCGTCCG 59.822 55.000 0.00 0.00 0.00 4.79
7080 12434 1.402968 CTTGCAACCTCATTCCCATCG 59.597 52.381 0.00 0.00 0.00 3.84
7105 12471 1.443407 CCCTGACCGATACTGCTGG 59.557 63.158 0.00 0.00 0.00 4.85
7118 12484 3.324930 CTCACAGCCTGGCCCTGA 61.325 66.667 16.57 14.77 34.47 3.86
7241 12640 2.611971 CGTCCGAGAGTCCCAAAATCAA 60.612 50.000 0.00 0.00 0.00 2.57
7248 12647 2.675423 CCACGTCCGAGAGTCCCA 60.675 66.667 0.00 0.00 0.00 4.37
7279 12680 7.439955 ACAACGTCTGAGATTACAATAACAACA 59.560 33.333 0.00 0.00 0.00 3.33
7280 12681 7.793902 ACAACGTCTGAGATTACAATAACAAC 58.206 34.615 0.00 0.00 0.00 3.32
7281 12682 7.956420 ACAACGTCTGAGATTACAATAACAA 57.044 32.000 0.00 0.00 0.00 2.83
7282 12683 7.439955 ACAACAACGTCTGAGATTACAATAACA 59.560 33.333 0.00 0.00 0.00 2.41
7283 12684 7.793902 ACAACAACGTCTGAGATTACAATAAC 58.206 34.615 0.00 0.00 0.00 1.89
7284 12685 7.956420 ACAACAACGTCTGAGATTACAATAA 57.044 32.000 0.00 0.00 0.00 1.40
7285 12686 7.439955 ACAACAACAACGTCTGAGATTACAATA 59.560 33.333 0.00 0.00 0.00 1.90
7286 12687 6.260050 ACAACAACAACGTCTGAGATTACAAT 59.740 34.615 0.00 0.00 0.00 2.71
7287 12688 5.583061 ACAACAACAACGTCTGAGATTACAA 59.417 36.000 0.00 0.00 0.00 2.41
7288 12689 5.113383 ACAACAACAACGTCTGAGATTACA 58.887 37.500 0.00 0.00 0.00 2.41
7289 12690 5.652744 ACAACAACAACGTCTGAGATTAC 57.347 39.130 0.00 0.00 0.00 1.89
7290 12691 7.870954 AGATTACAACAACAACGTCTGAGATTA 59.129 33.333 0.00 0.00 0.00 1.75
7291 12692 6.706270 AGATTACAACAACAACGTCTGAGATT 59.294 34.615 0.00 0.00 0.00 2.40
7292 12693 6.223852 AGATTACAACAACAACGTCTGAGAT 58.776 36.000 0.00 0.00 0.00 2.75
7293 12694 5.597806 AGATTACAACAACAACGTCTGAGA 58.402 37.500 0.00 0.00 0.00 3.27
7294 12695 5.462068 TGAGATTACAACAACAACGTCTGAG 59.538 40.000 0.00 0.00 0.00 3.35
7295 12696 5.353111 TGAGATTACAACAACAACGTCTGA 58.647 37.500 0.00 0.00 0.00 3.27
7296 12697 5.462068 TCTGAGATTACAACAACAACGTCTG 59.538 40.000 0.00 0.00 0.00 3.51
7297 12698 5.462398 GTCTGAGATTACAACAACAACGTCT 59.538 40.000 0.00 0.00 0.00 4.18
7298 12699 5.333111 GGTCTGAGATTACAACAACAACGTC 60.333 44.000 0.00 0.00 0.00 4.34
7299 12700 4.510340 GGTCTGAGATTACAACAACAACGT 59.490 41.667 0.00 0.00 0.00 3.99
7300 12701 4.084013 GGGTCTGAGATTACAACAACAACG 60.084 45.833 0.00 0.00 0.00 4.10
7301 12702 5.063880 AGGGTCTGAGATTACAACAACAAC 58.936 41.667 0.00 0.00 0.00 3.32
7302 12703 5.304686 AGGGTCTGAGATTACAACAACAA 57.695 39.130 0.00 0.00 0.00 2.83
7341 12746 5.163622 CCCATTTAGGTCTTGCACTTACATG 60.164 44.000 0.00 0.00 34.66 3.21
7347 12753 1.355720 AGCCCATTTAGGTCTTGCACT 59.644 47.619 0.00 0.00 34.66 4.40
7354 12760 2.027192 TCACAGACAGCCCATTTAGGTC 60.027 50.000 0.00 0.00 34.66 3.85
7396 12802 6.606796 ACCATTTGCCATATATGTCTCAACAA 59.393 34.615 11.73 3.89 39.30 2.83
7424 12830 3.882288 TGAATGCAAGCGGCTAATTATCA 59.118 39.130 1.35 3.26 45.15 2.15
7425 12831 4.488126 TGAATGCAAGCGGCTAATTATC 57.512 40.909 1.35 0.42 45.15 1.75
7426 12832 4.916983 TTGAATGCAAGCGGCTAATTAT 57.083 36.364 1.35 0.00 45.15 1.28
7485 12901 3.780902 CGTAATACAGACATGCCAGACA 58.219 45.455 0.00 0.00 0.00 3.41
7486 12902 2.540101 GCGTAATACAGACATGCCAGAC 59.460 50.000 0.00 0.00 0.00 3.51
7489 12905 2.682155 TGCGTAATACAGACATGCCA 57.318 45.000 0.00 0.00 0.00 4.92
7497 12913 8.186178 ACTAGAAAACTGAATGCGTAATACAG 57.814 34.615 0.00 0.00 35.14 2.74
7527 12961 1.068753 CTAGCTCCGCCAGTGATGG 59.931 63.158 0.00 0.00 0.00 3.51
7948 13382 2.069273 CAGGTTTCCATCGAGTGTGAC 58.931 52.381 0.00 0.00 0.00 3.67
7949 13383 1.967779 TCAGGTTTCCATCGAGTGTGA 59.032 47.619 0.00 0.00 0.00 3.58
7950 13384 2.455674 TCAGGTTTCCATCGAGTGTG 57.544 50.000 0.00 0.00 0.00 3.82
7951 13385 3.703001 ATTCAGGTTTCCATCGAGTGT 57.297 42.857 0.00 0.00 0.00 3.55
7952 13386 5.359756 TGATATTCAGGTTTCCATCGAGTG 58.640 41.667 0.00 0.00 0.00 3.51
7953 13387 5.614324 TGATATTCAGGTTTCCATCGAGT 57.386 39.130 0.00 0.00 0.00 4.18
7954 13388 6.540189 ACTTTGATATTCAGGTTTCCATCGAG 59.460 38.462 0.00 0.00 0.00 4.04
7955 13389 6.414732 ACTTTGATATTCAGGTTTCCATCGA 58.585 36.000 0.00 0.00 0.00 3.59
7956 13390 6.316140 TGACTTTGATATTCAGGTTTCCATCG 59.684 38.462 0.00 0.00 0.00 3.84
7969 13403 4.384056 CAGCCGGAGATGACTTTGATATT 58.616 43.478 5.05 0.00 0.00 1.28
7972 13406 1.745141 GCAGCCGGAGATGACTTTGAT 60.745 52.381 5.05 0.00 0.00 2.57
8016 13450 8.322091 AGTATCAACAATGCTAAGGAGTTAACT 58.678 33.333 8.13 8.13 0.00 2.24
8030 13468 3.127548 GGCACAGGACAGTATCAACAATG 59.872 47.826 0.00 0.00 0.00 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.