Multiple sequence alignment - TraesCS5D01G266300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G266300 chr5D 100.000 4933 0 0 1 4933 370472325 370467393 0.000000e+00 9110.0
1 TraesCS5D01G266300 chr5D 89.831 59 6 0 4502 4560 302333599 302333657 5.300000e-10 76.8
2 TraesCS5D01G266300 chr5D 81.250 96 14 2 4223 4318 441127444 441127353 1.900000e-09 75.0
3 TraesCS5D01G266300 chr5A 91.056 4260 227 71 239 4369 473024828 473020594 0.000000e+00 5614.0
4 TraesCS5D01G266300 chr5A 80.051 391 32 17 4574 4933 473020631 473020256 1.060000e-61 248.0
5 TraesCS5D01G266300 chr5A 90.678 118 8 3 1 117 473025085 473024970 2.380000e-33 154.0
6 TraesCS5D01G266300 chr5B 89.530 2875 131 51 1567 4345 439725933 439723133 0.000000e+00 3485.0
7 TraesCS5D01G266300 chr5B 89.094 1357 83 29 180 1489 439727300 439725962 0.000000e+00 1626.0
8 TraesCS5D01G266300 chr5B 97.297 74 1 1 23 95 439727435 439727362 1.860000e-24 124.0
9 TraesCS5D01G266300 chr5B 86.747 83 5 3 4223 4305 509175558 509175634 2.450000e-13 87.9
10 TraesCS5D01G266300 chr6D 84.211 95 12 2 4224 4318 96747893 96747802 6.800000e-14 89.8
11 TraesCS5D01G266300 chr6D 85.542 83 11 1 4224 4305 327364451 327364369 8.800000e-13 86.1
12 TraesCS5D01G266300 chr7D 81.053 95 18 0 4224 4318 235573649 235573555 5.300000e-10 76.8
13 TraesCS5D01G266300 chr7A 81.053 95 18 0 4224 4318 250681377 250681283 5.300000e-10 76.8
14 TraesCS5D01G266300 chr7A 82.927 82 10 1 4224 4305 52966776 52966853 2.460000e-08 71.3
15 TraesCS5D01G266300 chr4D 83.951 81 11 2 4224 4303 500440033 500440112 5.300000e-10 76.8
16 TraesCS5D01G266300 chr3A 97.297 37 0 1 4498 4534 648376605 648376640 1.480000e-05 62.1
17 TraesCS5D01G266300 chr3A 100.000 31 0 0 4502 4532 41535061 41535031 1.920000e-04 58.4
18 TraesCS5D01G266300 chr2B 100.000 28 0 0 4505 4532 786031311 786031284 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G266300 chr5D 370467393 370472325 4932 True 9110.000000 9110 100.000000 1 4933 1 chr5D.!!$R1 4932
1 TraesCS5D01G266300 chr5A 473020256 473025085 4829 True 2005.333333 5614 87.261667 1 4933 3 chr5A.!!$R1 4932
2 TraesCS5D01G266300 chr5B 439723133 439727435 4302 True 1745.000000 3485 91.973667 23 4345 3 chr5B.!!$R1 4322

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 145 0.323629 AAAAAGGATCGAGACGGCCA 59.676 50.000 2.24 0.0 0.00 5.36 F
1220 1340 0.034476 CAAGTGCCTGCTCAGTCAGA 59.966 55.000 0.00 0.0 36.19 3.27 F
1616 1740 0.338467 TCTTCCCTCGATTCCCCTCA 59.662 55.000 0.00 0.0 0.00 3.86 F
2136 2315 1.004628 ACAATGCCACCAGATAGCACA 59.995 47.619 0.00 0.0 39.77 4.57 F
3055 3235 1.437547 AGAAGGTTAGTGTCCCCCTCT 59.562 52.381 0.00 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1606 1730 0.322546 AAACGGCACTGAGGGGAATC 60.323 55.000 0.00 0.00 0.00 2.52 R
2324 2504 1.206849 CAACAACTGGTTTTGGTGGCT 59.793 47.619 0.00 0.00 40.03 4.75 R
3605 3788 0.326264 GGTGTGAGAGATTGGCCTGT 59.674 55.000 3.32 0.00 0.00 4.00 R
3794 3977 1.202976 GGGTAGCCCTGCATCATTGAT 60.203 52.381 0.00 0.00 41.34 2.57 R
4906 5170 0.032130 TTCAGCTGACGTCCACTGTC 59.968 55.000 25.40 6.34 36.88 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 120 0.539669 CCCTTCTTGGTTGGTGGGAC 60.540 60.000 0.00 0.00 36.90 4.46
112 122 0.889186 CTTCTTGGTTGGTGGGACGG 60.889 60.000 0.00 0.00 0.00 4.79
113 123 2.282180 CTTGGTTGGTGGGACGGG 60.282 66.667 0.00 0.00 0.00 5.28
114 124 3.860930 CTTGGTTGGTGGGACGGGG 62.861 68.421 0.00 0.00 0.00 5.73
115 125 4.902258 TGGTTGGTGGGACGGGGA 62.902 66.667 0.00 0.00 0.00 4.81
116 126 3.572222 GGTTGGTGGGACGGGGAA 61.572 66.667 0.00 0.00 0.00 3.97
117 127 2.516909 GTTGGTGGGACGGGGAAA 59.483 61.111 0.00 0.00 0.00 3.13
118 128 1.152715 GTTGGTGGGACGGGGAAAA 60.153 57.895 0.00 0.00 0.00 2.29
119 129 0.756070 GTTGGTGGGACGGGGAAAAA 60.756 55.000 0.00 0.00 0.00 1.94
134 144 3.154589 AAAAAGGATCGAGACGGCC 57.845 52.632 0.00 0.00 0.00 6.13
135 145 0.323629 AAAAAGGATCGAGACGGCCA 59.676 50.000 2.24 0.00 0.00 5.36
136 146 0.391263 AAAAGGATCGAGACGGCCAC 60.391 55.000 2.24 0.00 0.00 5.01
137 147 1.541310 AAAGGATCGAGACGGCCACA 61.541 55.000 2.24 0.00 0.00 4.17
138 148 2.202756 GGATCGAGACGGCCACAC 60.203 66.667 2.24 0.00 0.00 3.82
139 149 2.202756 GATCGAGACGGCCACACC 60.203 66.667 2.24 0.00 0.00 4.16
140 150 3.718210 GATCGAGACGGCCACACCC 62.718 68.421 2.24 0.00 33.26 4.61
143 153 4.394712 GAGACGGCCACACCCCTG 62.395 72.222 2.24 0.00 33.26 4.45
154 164 2.938798 ACCCCTGCCCGGAATTCA 60.939 61.111 0.73 0.00 33.16 2.57
158 168 2.046285 CCTGCCCGGAATTCACCAC 61.046 63.158 0.73 0.00 33.16 4.16
170 180 0.471780 TTCACCACTCTCTGCAGGGA 60.472 55.000 17.22 17.22 0.00 4.20
172 182 0.617413 CACCACTCTCTGCAGGGAAT 59.383 55.000 18.91 4.17 0.00 3.01
247 311 1.076559 TCCGTCCATCCGCCTTCTA 60.077 57.895 0.00 0.00 0.00 2.10
248 312 1.067582 CCGTCCATCCGCCTTCTAC 59.932 63.158 0.00 0.00 0.00 2.59
266 330 1.662686 ACTTTGGGGGAGGAGAAGAG 58.337 55.000 0.00 0.00 0.00 2.85
374 438 2.287368 GCCGGGTTTGTTTGTCTACTTG 60.287 50.000 2.18 0.00 0.00 3.16
387 451 3.176708 GTCTACTTGTTATCGCTTGCGA 58.823 45.455 19.89 19.89 0.00 5.10
422 486 3.443045 CGCCGGAATTGCTTGCCT 61.443 61.111 5.05 0.00 0.00 4.75
433 497 2.603075 TGCTTGCCTGGGAGTTATTT 57.397 45.000 0.00 0.00 0.00 1.40
462 527 1.674817 CGAGACGGGTTGGCTGTAAAT 60.675 52.381 0.00 0.00 0.00 1.40
464 529 2.418976 GAGACGGGTTGGCTGTAAATTC 59.581 50.000 0.00 0.00 0.00 2.17
510 575 4.081406 CCCATTTCAGTCATGGTTTCTCA 58.919 43.478 0.00 0.00 39.86 3.27
511 576 4.523943 CCCATTTCAGTCATGGTTTCTCAA 59.476 41.667 0.00 0.00 39.86 3.02
512 577 5.336213 CCCATTTCAGTCATGGTTTCTCAAG 60.336 44.000 0.00 0.00 39.86 3.02
513 578 5.474532 CCATTTCAGTCATGGTTTCTCAAGA 59.525 40.000 0.00 0.00 37.07 3.02
514 579 6.016024 CCATTTCAGTCATGGTTTCTCAAGAA 60.016 38.462 0.00 0.00 37.07 2.52
582 670 5.221185 CGAAATTGCATCTCTGGGAATTCAT 60.221 40.000 7.93 0.00 35.60 2.57
583 671 5.531122 AATTGCATCTCTGGGAATTCATG 57.469 39.130 7.93 2.47 31.78 3.07
585 673 3.972133 TGCATCTCTGGGAATTCATGTT 58.028 40.909 7.93 0.00 0.00 2.71
586 674 3.949754 TGCATCTCTGGGAATTCATGTTC 59.050 43.478 7.93 0.00 0.00 3.18
587 675 3.003068 GCATCTCTGGGAATTCATGTTCG 59.997 47.826 7.93 0.00 0.00 3.95
590 678 1.064758 TCTGGGAATTCATGTTCGGGG 60.065 52.381 7.93 0.00 0.00 5.73
591 679 0.995803 TGGGAATTCATGTTCGGGGA 59.004 50.000 7.93 0.00 0.00 4.81
592 680 1.568597 TGGGAATTCATGTTCGGGGAT 59.431 47.619 7.93 0.00 0.00 3.85
593 681 2.024464 TGGGAATTCATGTTCGGGGATT 60.024 45.455 7.93 0.00 0.00 3.01
597 685 2.418368 TTCATGTTCGGGGATTCAGG 57.582 50.000 0.00 0.00 0.00 3.86
599 687 0.546122 CATGTTCGGGGATTCAGGGA 59.454 55.000 0.00 0.00 0.00 4.20
600 688 1.064758 CATGTTCGGGGATTCAGGGAA 60.065 52.381 0.00 0.00 0.00 3.97
602 690 1.211949 TGTTCGGGGATTCAGGGAATC 59.788 52.381 9.85 9.85 45.26 2.52
652 740 3.378427 GTCCTCTGTTTTCTTGTGCAACT 59.622 43.478 0.00 0.00 38.04 3.16
654 742 4.816385 TCCTCTGTTTTCTTGTGCAACTAG 59.184 41.667 0.00 0.00 41.16 2.57
667 755 1.661341 CAACTAGTCAGAGCCCATGC 58.339 55.000 0.00 0.00 37.95 4.06
668 756 0.543749 AACTAGTCAGAGCCCATGCC 59.456 55.000 0.00 0.00 38.69 4.40
671 759 0.618680 TAGTCAGAGCCCATGCCTGT 60.619 55.000 0.00 0.00 37.20 4.00
723 820 7.123547 TCAGTGGTTTAATGAAGGTTTCAGTTT 59.876 33.333 0.00 0.00 43.98 2.66
797 895 9.180678 GTAAAAATAGAATTGTGTTGGTCTGTG 57.819 33.333 0.00 0.00 0.00 3.66
961 1081 5.950544 AGCATCCAAGTACTAATGTGGTA 57.049 39.130 10.44 0.20 32.68 3.25
1220 1340 0.034476 CAAGTGCCTGCTCAGTCAGA 59.966 55.000 0.00 0.00 36.19 3.27
1226 1346 1.805871 GCCTGCTCAGTCAGATACAGC 60.806 57.143 0.00 0.00 36.19 4.40
1268 1388 4.826733 GGATTTTTCCCTGCAACCAAATTT 59.173 37.500 0.00 0.00 0.00 1.82
1273 1393 2.103941 TCCCTGCAACCAAATTTGTTCC 59.896 45.455 16.73 3.04 0.00 3.62
1281 1401 5.334028 GCAACCAAATTTGTTCCATGCTAAC 60.334 40.000 16.73 2.99 0.00 2.34
1446 1566 2.821991 CTCTTCTTGAGTCACCGGTT 57.178 50.000 2.97 0.00 37.99 4.44
1513 1633 3.884693 TCTATTGTGCTATGCCACCAATG 59.115 43.478 0.00 0.00 34.85 2.82
1561 1681 2.747686 GGAGGACAACGGAAGCCA 59.252 61.111 0.00 0.00 0.00 4.75
1565 1685 1.671379 GGACAACGGAAGCCAGTCC 60.671 63.158 0.00 0.00 40.62 3.85
1577 1701 0.605589 GCCAGTCCGTTTACAAGGCT 60.606 55.000 0.00 0.00 38.82 4.58
1585 1709 0.517316 GTTTACAAGGCTGCTGGACG 59.483 55.000 0.00 0.00 0.00 4.79
1588 1712 2.449031 TACAAGGCTGCTGGACGTGG 62.449 60.000 0.00 0.00 36.74 4.94
1606 1730 2.881352 GCGTTCGCTCTTCCCTCG 60.881 66.667 9.99 0.00 0.00 4.63
1616 1740 0.338467 TCTTCCCTCGATTCCCCTCA 59.662 55.000 0.00 0.00 0.00 3.86
1633 1757 2.160417 CCTCAGTGCCGTTTCAGATTTC 59.840 50.000 0.00 0.00 0.00 2.17
1634 1758 2.807967 CTCAGTGCCGTTTCAGATTTCA 59.192 45.455 0.00 0.00 0.00 2.69
1668 1805 3.120580 CGTGTGTACGTGGGGATAAAAAC 60.121 47.826 0.00 0.00 44.99 2.43
1669 1806 3.814283 GTGTGTACGTGGGGATAAAAACA 59.186 43.478 0.00 0.00 0.00 2.83
1676 1813 3.065371 CGTGGGGATAAAAACAGATCAGC 59.935 47.826 0.00 0.00 0.00 4.26
1710 1857 7.540745 ACGAAAGTACCAATTAATTGATGTTGC 59.459 33.333 26.32 12.83 46.88 4.17
1742 1889 9.953565 ACTATACTTTGAGTTAGCAATTACCAA 57.046 29.630 0.00 0.00 0.00 3.67
1748 1895 8.958175 TTTGAGTTAGCAATTACCAATAAACG 57.042 30.769 0.00 0.00 0.00 3.60
1829 1977 7.846644 ATCATTGTCTTGTTTTTGCAGAAAA 57.153 28.000 3.66 3.63 0.00 2.29
1840 1990 7.242079 TGTTTTTGCAGAAAACATTTGATGTG 58.758 30.769 23.79 0.00 44.07 3.21
1872 2022 6.758886 CAGATGGTTTTGTCAGTATAGAGACC 59.241 42.308 2.90 0.00 33.89 3.85
1884 2034 8.634444 GTCAGTATAGAGACCTGTGATTACAAT 58.366 37.037 0.00 0.00 36.14 2.71
1934 2093 8.360390 GTCCAAAAATTGACCTCTGTTTAGAAT 58.640 33.333 0.00 0.00 31.21 2.40
1942 2101 7.288810 TGACCTCTGTTTAGAATTTTGCAAT 57.711 32.000 0.00 0.00 31.21 3.56
1947 2107 7.439056 CCTCTGTTTAGAATTTTGCAATGTTGT 59.561 33.333 0.00 0.00 31.21 3.32
2026 2186 8.800972 CACAAATGTTCAAATACATATGTGCTC 58.199 33.333 18.81 3.02 37.76 4.26
2036 2215 3.689347 ACATATGTGCTCACCAATGTGT 58.311 40.909 7.78 6.68 43.26 3.72
2136 2315 1.004628 ACAATGCCACCAGATAGCACA 59.995 47.619 0.00 0.00 39.77 4.57
2220 2399 8.044908 GTGGAAAAGGTAATATCCTTGACTGTA 58.955 37.037 0.00 0.00 45.79 2.74
2227 2406 5.700402 AATATCCTTGACTGTAAGCACCT 57.300 39.130 0.00 0.00 37.60 4.00
2228 2407 6.808321 AATATCCTTGACTGTAAGCACCTA 57.192 37.500 0.00 0.00 37.60 3.08
2235 2414 6.016276 CCTTGACTGTAAGCACCTATTGTTTT 60.016 38.462 0.00 0.00 37.60 2.43
2237 2416 5.472137 TGACTGTAAGCACCTATTGTTTTCC 59.528 40.000 0.00 0.00 37.60 3.13
2340 2520 2.741145 TGTTAGCCACCAAAACCAGTT 58.259 42.857 0.00 0.00 0.00 3.16
2394 2574 3.475566 TCAGTCAAGCTTTACTGCAGT 57.524 42.857 28.38 25.12 42.31 4.40
2454 2634 2.223595 CGTCTGACTCTGTGTTCAGTGT 60.224 50.000 6.21 3.21 46.58 3.55
3055 3235 1.437547 AGAAGGTTAGTGTCCCCCTCT 59.562 52.381 0.00 0.00 0.00 3.69
3060 3240 3.599698 AGGTTAGTGTCCCCCTCTACTTA 59.400 47.826 0.00 0.00 0.00 2.24
3074 3254 6.296259 CCCCTCTACTTAACCACTTAACACAT 60.296 42.308 0.00 0.00 0.00 3.21
3108 3288 6.845758 ATTTCTTTTCATTGATGAGCCTGA 57.154 33.333 0.00 0.00 38.19 3.86
3146 3326 5.665459 CTGGATGCTTTAGCTAGTGTTACT 58.335 41.667 3.10 0.00 42.66 2.24
3446 3629 4.120589 GCAGGAGCTACTACAAATGTACC 58.879 47.826 0.00 0.00 37.91 3.34
3999 4200 5.163205 TGCCTGTATACATGGTAGAATTGCT 60.163 40.000 5.91 0.00 0.00 3.91
4175 4377 6.429385 TGGGCATTGGTTAAATCAATCAAAAC 59.571 34.615 3.21 0.00 40.59 2.43
4177 4379 6.128035 GGCATTGGTTAAATCAATCAAAACCC 60.128 38.462 0.00 0.00 40.59 4.11
4182 4384 6.014669 TGGTTAAATCAATCAAAACCCCTCAG 60.015 38.462 0.00 0.00 39.07 3.35
4198 4400 0.339859 TCAGGGTATGAGGGTGAGCT 59.660 55.000 0.00 0.00 32.77 4.09
4296 4523 8.842280 TCTAACTTTGAAATAAAACCACGACAT 58.158 29.630 0.00 0.00 0.00 3.06
4349 4576 4.344679 TCTGAAAGAAACATTGGTTGCCAT 59.655 37.500 0.00 0.00 42.31 4.40
4350 4577 5.033589 TGAAAGAAACATTGGTTGCCATT 57.966 34.783 0.00 0.00 37.30 3.16
4351 4578 5.055812 TGAAAGAAACATTGGTTGCCATTC 58.944 37.500 0.00 0.00 37.30 2.67
4352 4579 4.961438 AAGAAACATTGGTTGCCATTCT 57.039 36.364 0.00 0.00 37.30 2.40
4353 4580 6.041409 TGAAAGAAACATTGGTTGCCATTCTA 59.959 34.615 0.00 0.00 37.30 2.10
4354 4581 6.418057 AAGAAACATTGGTTGCCATTCTAA 57.582 33.333 0.00 0.00 37.30 2.10
4355 4582 5.783111 AGAAACATTGGTTGCCATTCTAAC 58.217 37.500 0.00 0.00 37.30 2.34
4356 4583 3.848272 ACATTGGTTGCCATTCTAACG 57.152 42.857 0.00 0.00 31.53 3.18
4357 4584 2.094752 ACATTGGTTGCCATTCTAACGC 60.095 45.455 0.00 0.00 31.53 4.84
4358 4585 1.904287 TTGGTTGCCATTCTAACGCT 58.096 45.000 0.00 0.00 31.53 5.07
4359 4586 1.448985 TGGTTGCCATTCTAACGCTC 58.551 50.000 0.00 0.00 0.00 5.03
4360 4587 1.003118 TGGTTGCCATTCTAACGCTCT 59.997 47.619 0.00 0.00 0.00 4.09
4361 4588 1.398390 GGTTGCCATTCTAACGCTCTG 59.602 52.381 0.00 0.00 0.00 3.35
4362 4589 2.076863 GTTGCCATTCTAACGCTCTGT 58.923 47.619 0.00 0.00 0.00 3.41
4363 4590 1.725641 TGCCATTCTAACGCTCTGTG 58.274 50.000 0.00 0.00 0.00 3.66
4364 4591 0.375106 GCCATTCTAACGCTCTGTGC 59.625 55.000 0.00 0.00 38.57 4.57
4377 4604 4.340894 GCTCTGTGCGTTAAATCAATCA 57.659 40.909 0.00 0.00 0.00 2.57
4378 4605 4.722194 GCTCTGTGCGTTAAATCAATCAA 58.278 39.130 0.00 0.00 0.00 2.57
4379 4606 5.153513 GCTCTGTGCGTTAAATCAATCAAA 58.846 37.500 0.00 0.00 0.00 2.69
4380 4607 5.629020 GCTCTGTGCGTTAAATCAATCAAAA 59.371 36.000 0.00 0.00 0.00 2.44
4381 4608 6.308766 GCTCTGTGCGTTAAATCAATCAAAAT 59.691 34.615 0.00 0.00 0.00 1.82
4382 4609 7.461938 GCTCTGTGCGTTAAATCAATCAAAATC 60.462 37.037 0.00 0.00 0.00 2.17
4383 4610 6.806249 TCTGTGCGTTAAATCAATCAAAATCC 59.194 34.615 0.00 0.00 0.00 3.01
4384 4611 5.866633 TGTGCGTTAAATCAATCAAAATCCC 59.133 36.000 0.00 0.00 0.00 3.85
4385 4612 6.099341 GTGCGTTAAATCAATCAAAATCCCT 58.901 36.000 0.00 0.00 0.00 4.20
4386 4613 6.253512 GTGCGTTAAATCAATCAAAATCCCTC 59.746 38.462 0.00 0.00 0.00 4.30
4387 4614 6.071672 TGCGTTAAATCAATCAAAATCCCTCA 60.072 34.615 0.00 0.00 0.00 3.86
4388 4615 6.980397 GCGTTAAATCAATCAAAATCCCTCAT 59.020 34.615 0.00 0.00 0.00 2.90
4389 4616 7.043192 GCGTTAAATCAATCAAAATCCCTCATG 60.043 37.037 0.00 0.00 0.00 3.07
4390 4617 7.975616 CGTTAAATCAATCAAAATCCCTCATGT 59.024 33.333 0.00 0.00 0.00 3.21
4391 4618 9.657419 GTTAAATCAATCAAAATCCCTCATGTT 57.343 29.630 0.00 0.00 0.00 2.71
4394 4621 9.826574 AAATCAATCAAAATCCCTCATGTTATG 57.173 29.630 0.00 0.00 0.00 1.90
4395 4622 8.771521 ATCAATCAAAATCCCTCATGTTATGA 57.228 30.769 0.00 0.00 37.76 2.15
4406 4633 3.808728 TCATGTTATGAGGGTTAGCAGC 58.191 45.455 0.00 0.00 33.59 5.25
4407 4634 3.199727 TCATGTTATGAGGGTTAGCAGCA 59.800 43.478 0.00 0.00 33.59 4.41
4408 4635 3.266510 TGTTATGAGGGTTAGCAGCAG 57.733 47.619 0.00 0.00 0.00 4.24
4409 4636 1.943340 GTTATGAGGGTTAGCAGCAGC 59.057 52.381 0.00 0.00 42.56 5.25
4419 4646 4.972875 GCAGCAGCTCCTATGGTT 57.027 55.556 0.00 0.00 37.91 3.67
4420 4647 2.401967 GCAGCAGCTCCTATGGTTG 58.598 57.895 0.00 0.00 37.91 3.77
4421 4648 0.393537 GCAGCAGCTCCTATGGTTGT 60.394 55.000 0.00 0.00 37.91 3.32
4422 4649 1.661341 CAGCAGCTCCTATGGTTGTC 58.339 55.000 0.00 0.00 0.00 3.18
4423 4650 1.065926 CAGCAGCTCCTATGGTTGTCA 60.066 52.381 0.00 0.00 0.00 3.58
4424 4651 1.630369 AGCAGCTCCTATGGTTGTCAA 59.370 47.619 0.00 0.00 0.00 3.18
4425 4652 2.012673 GCAGCTCCTATGGTTGTCAAG 58.987 52.381 0.00 0.00 0.00 3.02
4426 4653 2.616510 GCAGCTCCTATGGTTGTCAAGT 60.617 50.000 0.00 0.00 0.00 3.16
4427 4654 3.005554 CAGCTCCTATGGTTGTCAAGTG 58.994 50.000 0.00 0.00 0.00 3.16
4428 4655 1.740025 GCTCCTATGGTTGTCAAGTGC 59.260 52.381 0.00 0.00 0.00 4.40
4429 4656 2.616510 GCTCCTATGGTTGTCAAGTGCT 60.617 50.000 0.00 0.00 0.00 4.40
4430 4657 3.369471 GCTCCTATGGTTGTCAAGTGCTA 60.369 47.826 0.00 0.00 0.00 3.49
4431 4658 4.184629 CTCCTATGGTTGTCAAGTGCTAC 58.815 47.826 0.00 0.00 0.00 3.58
4432 4659 3.055385 TCCTATGGTTGTCAAGTGCTACC 60.055 47.826 0.00 0.00 33.45 3.18
4433 4660 2.949177 ATGGTTGTCAAGTGCTACCA 57.051 45.000 0.00 0.00 43.50 3.25
4434 4661 1.961793 TGGTTGTCAAGTGCTACCAC 58.038 50.000 0.00 0.00 42.39 4.16
4443 4670 3.834732 GTGCTACCACTACACCTGG 57.165 57.895 0.00 0.00 38.93 4.45
4444 4671 0.974383 GTGCTACCACTACACCTGGT 59.026 55.000 0.00 0.00 44.59 4.00
4445 4672 0.973632 TGCTACCACTACACCTGGTG 59.026 55.000 24.80 24.80 42.31 4.17
4446 4673 0.391263 GCTACCACTACACCTGGTGC 60.391 60.000 26.20 5.49 42.31 5.01
4447 4674 1.267121 CTACCACTACACCTGGTGCT 58.733 55.000 26.20 15.50 42.31 4.40
4448 4675 1.623811 CTACCACTACACCTGGTGCTT 59.376 52.381 26.20 10.86 42.31 3.91
4449 4676 0.843984 ACCACTACACCTGGTGCTTT 59.156 50.000 26.20 10.11 40.73 3.51
4450 4677 1.214424 ACCACTACACCTGGTGCTTTT 59.786 47.619 26.20 9.74 40.73 2.27
4451 4678 2.306847 CCACTACACCTGGTGCTTTTT 58.693 47.619 26.20 9.36 36.98 1.94
4452 4679 2.293399 CCACTACACCTGGTGCTTTTTC 59.707 50.000 26.20 0.00 36.98 2.29
4453 4680 2.032030 CACTACACCTGGTGCTTTTTCG 60.032 50.000 26.20 5.62 36.98 3.46
4454 4681 2.218603 CTACACCTGGTGCTTTTTCGT 58.781 47.619 26.20 7.13 36.98 3.85
4455 4682 2.335316 ACACCTGGTGCTTTTTCGTA 57.665 45.000 26.20 0.00 36.98 3.43
4456 4683 1.944709 ACACCTGGTGCTTTTTCGTAC 59.055 47.619 26.20 0.00 36.98 3.67
4457 4684 2.218603 CACCTGGTGCTTTTTCGTACT 58.781 47.619 14.87 0.00 0.00 2.73
4458 4685 2.223377 CACCTGGTGCTTTTTCGTACTC 59.777 50.000 14.87 0.00 0.00 2.59
4459 4686 2.104281 ACCTGGTGCTTTTTCGTACTCT 59.896 45.455 0.00 0.00 0.00 3.24
4460 4687 3.139077 CCTGGTGCTTTTTCGTACTCTT 58.861 45.455 0.00 0.00 0.00 2.85
4461 4688 3.564225 CCTGGTGCTTTTTCGTACTCTTT 59.436 43.478 0.00 0.00 0.00 2.52
4462 4689 4.527564 CTGGTGCTTTTTCGTACTCTTTG 58.472 43.478 0.00 0.00 0.00 2.77
4463 4690 3.942748 TGGTGCTTTTTCGTACTCTTTGT 59.057 39.130 0.00 0.00 0.00 2.83
4464 4691 4.396790 TGGTGCTTTTTCGTACTCTTTGTT 59.603 37.500 0.00 0.00 0.00 2.83
4465 4692 5.106078 TGGTGCTTTTTCGTACTCTTTGTTT 60.106 36.000 0.00 0.00 0.00 2.83
4466 4693 5.454554 GGTGCTTTTTCGTACTCTTTGTTTC 59.545 40.000 0.00 0.00 0.00 2.78
4467 4694 6.025280 GTGCTTTTTCGTACTCTTTGTTTCA 58.975 36.000 0.00 0.00 0.00 2.69
4468 4695 6.525280 GTGCTTTTTCGTACTCTTTGTTTCAA 59.475 34.615 0.00 0.00 0.00 2.69
4469 4696 7.061326 GTGCTTTTTCGTACTCTTTGTTTCAAA 59.939 33.333 0.00 0.00 0.00 2.69
4470 4697 7.595502 TGCTTTTTCGTACTCTTTGTTTCAAAA 59.404 29.630 0.00 0.00 0.00 2.44
4471 4698 8.592155 GCTTTTTCGTACTCTTTGTTTCAAAAT 58.408 29.630 0.00 0.00 0.00 1.82
4487 4714 9.645059 TGTTTCAAAATAAATGTTGTGACTTCA 57.355 25.926 0.00 0.00 0.00 3.02
4489 4716 9.868277 TTTCAAAATAAATGTTGTGACTTCAGT 57.132 25.926 0.00 0.00 0.00 3.41
4490 4717 9.868277 TTCAAAATAAATGTTGTGACTTCAGTT 57.132 25.926 0.00 0.00 0.00 3.16
4491 4718 9.515020 TCAAAATAAATGTTGTGACTTCAGTTC 57.485 29.630 0.00 0.00 0.00 3.01
4492 4719 9.299963 CAAAATAAATGTTGTGACTTCAGTTCA 57.700 29.630 0.00 0.00 0.00 3.18
4493 4720 9.868277 AAAATAAATGTTGTGACTTCAGTTCAA 57.132 25.926 0.00 0.00 0.00 2.69
4494 4721 9.868277 AAATAAATGTTGTGACTTCAGTTCAAA 57.132 25.926 0.00 0.00 0.00 2.69
4497 4724 7.760131 AATGTTGTGACTTCAGTTCAAATTG 57.240 32.000 0.00 0.00 0.00 2.32
4498 4725 6.266168 TGTTGTGACTTCAGTTCAAATTGT 57.734 33.333 0.00 0.00 0.00 2.71
4499 4726 6.686630 TGTTGTGACTTCAGTTCAAATTGTT 58.313 32.000 0.00 0.00 0.00 2.83
4500 4727 7.151308 TGTTGTGACTTCAGTTCAAATTGTTT 58.849 30.769 0.00 0.00 0.00 2.83
4501 4728 7.328249 TGTTGTGACTTCAGTTCAAATTGTTTC 59.672 33.333 0.00 0.00 0.00 2.78
4502 4729 6.918626 TGTGACTTCAGTTCAAATTGTTTCA 58.081 32.000 0.00 0.00 0.00 2.69
4503 4730 7.374272 TGTGACTTCAGTTCAAATTGTTTCAA 58.626 30.769 0.00 0.00 0.00 2.69
4504 4731 7.869937 TGTGACTTCAGTTCAAATTGTTTCAAA 59.130 29.630 0.00 0.00 0.00 2.69
4505 4732 8.707839 GTGACTTCAGTTCAAATTGTTTCAAAA 58.292 29.630 0.00 0.00 0.00 2.44
4506 4733 9.434420 TGACTTCAGTTCAAATTGTTTCAAAAT 57.566 25.926 0.00 0.00 0.00 1.82
4559 4786 9.458374 AAAGTAAAAGAACGACACATATTTTGG 57.542 29.630 0.00 0.00 0.00 3.28
4560 4787 8.385898 AGTAAAAGAACGACACATATTTTGGA 57.614 30.769 0.00 0.00 0.00 3.53
4561 4788 8.842280 AGTAAAAGAACGACACATATTTTGGAA 58.158 29.630 0.00 0.00 0.00 3.53
4562 4789 7.924103 AAAAGAACGACACATATTTTGGAAC 57.076 32.000 0.00 0.00 0.00 3.62
4563 4790 6.627395 AAGAACGACACATATTTTGGAACA 57.373 33.333 0.00 0.00 0.00 3.18
4564 4791 6.241207 AGAACGACACATATTTTGGAACAG 57.759 37.500 0.00 0.00 42.39 3.16
4565 4792 5.995282 AGAACGACACATATTTTGGAACAGA 59.005 36.000 0.00 0.00 42.39 3.41
4566 4793 6.655003 AGAACGACACATATTTTGGAACAGAT 59.345 34.615 0.00 0.00 42.39 2.90
4567 4794 6.182039 ACGACACATATTTTGGAACAGATG 57.818 37.500 0.00 0.00 42.39 2.90
4568 4795 5.937540 ACGACACATATTTTGGAACAGATGA 59.062 36.000 0.00 0.00 42.39 2.92
4569 4796 6.429692 ACGACACATATTTTGGAACAGATGAA 59.570 34.615 0.00 0.00 42.39 2.57
4570 4797 6.963242 CGACACATATTTTGGAACAGATGAAG 59.037 38.462 0.00 0.00 42.39 3.02
4571 4798 7.361201 CGACACATATTTTGGAACAGATGAAGT 60.361 37.037 0.00 0.00 42.39 3.01
4572 4799 8.181904 ACACATATTTTGGAACAGATGAAGTT 57.818 30.769 0.00 0.00 42.39 2.66
4573 4800 9.295825 ACACATATTTTGGAACAGATGAAGTTA 57.704 29.630 0.00 0.00 42.39 2.24
4579 4806 9.750125 ATTTTGGAACAGATGAAGTTAAGAAAC 57.250 29.630 0.00 0.00 42.39 2.78
4580 4807 7.873719 TTGGAACAGATGAAGTTAAGAAACA 57.126 32.000 0.00 0.00 42.39 2.83
4581 4808 8.463930 TTGGAACAGATGAAGTTAAGAAACAT 57.536 30.769 0.00 0.00 42.39 2.71
4582 4809 8.099364 TGGAACAGATGAAGTTAAGAAACATC 57.901 34.615 0.00 0.00 38.12 3.06
4583 4810 7.095229 TGGAACAGATGAAGTTAAGAAACATCG 60.095 37.037 0.00 0.00 41.15 3.84
4584 4811 6.727824 ACAGATGAAGTTAAGAAACATCGG 57.272 37.500 0.00 0.00 41.15 4.18
4585 4812 6.231211 ACAGATGAAGTTAAGAAACATCGGT 58.769 36.000 0.00 0.00 41.15 4.69
4586 4813 6.710744 ACAGATGAAGTTAAGAAACATCGGTT 59.289 34.615 0.00 0.00 40.98 4.44
4587 4814 7.017645 CAGATGAAGTTAAGAAACATCGGTTG 58.982 38.462 0.00 0.00 41.15 3.77
4588 4815 5.103290 TGAAGTTAAGAAACATCGGTTGC 57.897 39.130 0.00 0.00 36.36 4.17
4589 4816 4.023536 TGAAGTTAAGAAACATCGGTTGCC 60.024 41.667 0.00 0.00 36.36 4.52
4590 4817 2.482721 AGTTAAGAAACATCGGTTGCCG 59.517 45.455 0.49 0.49 42.41 5.69
4620 4847 4.484872 GTGGGTTAGAGGCCGGCC 62.485 72.222 39.29 39.29 0.00 6.13
4624 4851 4.832608 GTTAGAGGCCGGCCGTGG 62.833 72.222 38.88 11.15 41.95 4.94
4636 4863 1.078988 GCCGTGGGACGATGGTTTA 60.079 57.895 0.00 0.00 46.05 2.01
4640 4867 0.252197 GTGGGACGATGGTTTAGCCT 59.748 55.000 0.00 0.00 38.35 4.58
4665 4892 3.980989 CGGGTGGGTCGACGACAA 61.981 66.667 27.77 13.77 33.68 3.18
4666 4893 2.356673 GGGTGGGTCGACGACAAC 60.357 66.667 27.77 23.07 33.68 3.32
4667 4894 2.732094 GGTGGGTCGACGACAACG 60.732 66.667 27.77 0.00 45.75 4.10
4668 4895 2.332514 GTGGGTCGACGACAACGA 59.667 61.111 27.77 7.53 42.66 3.85
4669 4896 1.728426 GTGGGTCGACGACAACGAG 60.728 63.158 27.77 0.00 42.66 4.18
4670 4897 2.188829 TGGGTCGACGACAACGAGT 61.189 57.895 27.77 0.00 42.66 4.18
4671 4898 1.728426 GGGTCGACGACAACGAGTG 60.728 63.158 27.77 0.00 42.66 3.51
4672 4899 1.009222 GGTCGACGACAACGAGTGT 60.009 57.895 27.77 0.00 45.74 3.55
4673 4900 1.266786 GGTCGACGACAACGAGTGTG 61.267 60.000 27.77 0.00 41.96 3.82
4674 4901 0.316442 GTCGACGACAACGAGTGTGA 60.316 55.000 22.66 0.00 41.96 3.58
4675 4902 0.377905 TCGACGACAACGAGTGTGAA 59.622 50.000 0.00 0.00 41.96 3.18
4676 4903 0.770590 CGACGACAACGAGTGTGAAG 59.229 55.000 1.25 0.00 41.96 3.02
4695 4922 4.142026 TGAAGACGACTGAAACTGGAAGAA 60.142 41.667 0.00 0.00 37.43 2.52
4696 4923 4.402056 AGACGACTGAAACTGGAAGAAA 57.598 40.909 0.00 0.00 37.43 2.52
4697 4924 4.372656 AGACGACTGAAACTGGAAGAAAG 58.627 43.478 0.00 0.00 37.43 2.62
4699 4926 4.962155 ACGACTGAAACTGGAAGAAAGAT 58.038 39.130 0.00 0.00 37.43 2.40
4701 4928 6.159988 ACGACTGAAACTGGAAGAAAGATAG 58.840 40.000 0.00 0.00 37.43 2.08
4702 4929 6.159988 CGACTGAAACTGGAAGAAAGATAGT 58.840 40.000 0.00 0.00 37.43 2.12
4704 4931 6.159988 ACTGAAACTGGAAGAAAGATAGTCG 58.840 40.000 0.00 0.00 37.43 4.18
4705 4932 6.097915 TGAAACTGGAAGAAAGATAGTCGT 57.902 37.500 0.00 0.00 37.43 4.34
4706 4933 5.926542 TGAAACTGGAAGAAAGATAGTCGTG 59.073 40.000 0.00 0.00 37.43 4.35
4707 4934 4.457834 ACTGGAAGAAAGATAGTCGTGG 57.542 45.455 0.00 0.00 37.43 4.94
4708 4935 3.190874 CTGGAAGAAAGATAGTCGTGGC 58.809 50.000 0.00 0.00 34.07 5.01
4709 4936 2.832129 TGGAAGAAAGATAGTCGTGGCT 59.168 45.455 0.00 0.00 0.00 4.75
4710 4937 3.260884 TGGAAGAAAGATAGTCGTGGCTT 59.739 43.478 0.00 0.00 0.00 4.35
4711 4938 4.254492 GGAAGAAAGATAGTCGTGGCTTT 58.746 43.478 0.00 0.00 33.62 3.51
4712 4939 4.093556 GGAAGAAAGATAGTCGTGGCTTTG 59.906 45.833 0.00 0.00 31.30 2.77
4713 4940 4.273148 AGAAAGATAGTCGTGGCTTTGT 57.727 40.909 0.00 0.00 31.30 2.83
4714 4941 4.642429 AGAAAGATAGTCGTGGCTTTGTT 58.358 39.130 0.00 0.00 31.30 2.83
4715 4942 4.691216 AGAAAGATAGTCGTGGCTTTGTTC 59.309 41.667 0.00 0.00 31.30 3.18
4717 4944 2.007608 GATAGTCGTGGCTTTGTTCCC 58.992 52.381 0.00 0.00 0.00 3.97
4718 4945 1.053424 TAGTCGTGGCTTTGTTCCCT 58.947 50.000 0.00 0.00 0.00 4.20
4780 5020 3.392769 GCATGGTAAATGCGAACGTTA 57.607 42.857 0.00 0.00 35.17 3.18
4790 5030 1.807142 TGCGAACGTTATTCATGGCAA 59.193 42.857 0.00 0.00 0.00 4.52
4802 5042 8.372521 CGTTATTCATGGCAATTTTTGTTAGTC 58.627 33.333 0.00 0.00 0.00 2.59
4805 5045 6.078202 TCATGGCAATTTTTGTTAGTCGAA 57.922 33.333 0.00 0.00 0.00 3.71
4816 5056 7.778470 TTTTGTTAGTCGAAAATGGCAAATT 57.222 28.000 0.00 0.00 0.00 1.82
4817 5057 8.873215 TTTTGTTAGTCGAAAATGGCAAATTA 57.127 26.923 0.00 0.00 0.00 1.40
4818 5058 9.482627 TTTTGTTAGTCGAAAATGGCAAATTAT 57.517 25.926 0.00 0.00 0.00 1.28
4819 5059 9.482627 TTTGTTAGTCGAAAATGGCAAATTATT 57.517 25.926 0.00 0.00 0.00 1.40
4820 5060 9.482627 TTGTTAGTCGAAAATGGCAAATTATTT 57.517 25.926 0.00 0.00 0.00 1.40
4822 5062 9.739786 GTTAGTCGAAAATGGCAAATTATTTTG 57.260 29.630 5.85 5.85 44.18 2.44
4852 5116 7.031975 GCTTGCTAGCTAAATTTGTCATTCTT 58.968 34.615 17.23 0.00 44.27 2.52
4899 5163 2.231235 ACGTTTGATTTGCCATCCCTTC 59.769 45.455 0.00 0.00 0.00 3.46
4901 5165 1.864669 TTGATTTGCCATCCCTTCCC 58.135 50.000 0.00 0.00 0.00 3.97
4902 5166 0.395586 TGATTTGCCATCCCTTCCCG 60.396 55.000 0.00 0.00 0.00 5.14
4903 5167 1.076044 ATTTGCCATCCCTTCCCGG 60.076 57.895 0.00 0.00 0.00 5.73
4904 5168 1.580066 ATTTGCCATCCCTTCCCGGA 61.580 55.000 0.73 0.00 36.02 5.14
4905 5169 2.210144 TTTGCCATCCCTTCCCGGAG 62.210 60.000 0.73 0.00 34.69 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 0.681564 ACGAGGGTAGGTCTGCTCTG 60.682 60.000 0.00 0.00 0.00 3.35
18 19 0.394625 GACGAGGGTAGGTCTGCTCT 60.395 60.000 0.00 0.00 0.00 4.09
19 20 1.385756 GGACGAGGGTAGGTCTGCTC 61.386 65.000 0.00 0.00 33.70 4.26
20 21 1.380112 GGACGAGGGTAGGTCTGCT 60.380 63.158 0.00 0.00 33.70 4.24
21 22 2.772691 CGGACGAGGGTAGGTCTGC 61.773 68.421 0.00 0.00 33.23 4.26
116 126 0.323629 TGGCCGTCTCGATCCTTTTT 59.676 50.000 0.00 0.00 0.00 1.94
117 127 0.391263 GTGGCCGTCTCGATCCTTTT 60.391 55.000 0.00 0.00 0.00 2.27
118 128 1.218316 GTGGCCGTCTCGATCCTTT 59.782 57.895 0.00 0.00 0.00 3.11
119 129 1.982395 TGTGGCCGTCTCGATCCTT 60.982 57.895 0.00 0.00 0.00 3.36
120 130 2.362503 TGTGGCCGTCTCGATCCT 60.363 61.111 0.00 0.00 0.00 3.24
121 131 2.202756 GTGTGGCCGTCTCGATCC 60.203 66.667 0.00 0.00 0.00 3.36
122 132 2.202756 GGTGTGGCCGTCTCGATC 60.203 66.667 0.00 0.00 0.00 3.69
123 133 3.771160 GGGTGTGGCCGTCTCGAT 61.771 66.667 0.00 0.00 38.44 3.59
126 136 4.394712 CAGGGGTGTGGCCGTCTC 62.395 72.222 0.00 0.00 38.44 3.36
134 144 3.583882 AATTCCGGGCAGGGGTGTG 62.584 63.158 0.00 0.00 41.52 3.82
135 145 3.264845 AATTCCGGGCAGGGGTGT 61.265 61.111 0.00 0.00 41.52 4.16
136 146 2.440247 GAATTCCGGGCAGGGGTG 60.440 66.667 0.00 0.00 41.52 4.61
137 147 2.938798 TGAATTCCGGGCAGGGGT 60.939 61.111 0.00 0.00 41.52 4.95
138 148 2.440247 GTGAATTCCGGGCAGGGG 60.440 66.667 0.00 0.00 41.52 4.79
139 149 2.440247 GGTGAATTCCGGGCAGGG 60.440 66.667 0.00 0.00 41.52 4.45
140 150 2.046285 GTGGTGAATTCCGGGCAGG 61.046 63.158 0.00 0.00 42.97 4.85
141 151 1.002134 AGTGGTGAATTCCGGGCAG 60.002 57.895 0.00 0.00 0.00 4.85
142 152 1.002624 GAGTGGTGAATTCCGGGCA 60.003 57.895 0.00 0.00 0.00 5.36
143 153 0.744771 GAGAGTGGTGAATTCCGGGC 60.745 60.000 0.00 0.00 0.00 6.13
144 154 0.905357 AGAGAGTGGTGAATTCCGGG 59.095 55.000 0.00 0.00 0.00 5.73
145 155 2.009042 GCAGAGAGTGGTGAATTCCGG 61.009 57.143 2.27 0.00 0.00 5.14
146 156 1.338105 TGCAGAGAGTGGTGAATTCCG 60.338 52.381 2.27 0.00 0.00 4.30
154 164 1.366319 AATTCCCTGCAGAGAGTGGT 58.634 50.000 17.39 0.00 0.00 4.16
158 168 4.593956 ACCTAAAAATTCCCTGCAGAGAG 58.406 43.478 17.39 3.42 0.00 3.20
170 180 6.016527 GGTGACGGAGAAGAAACCTAAAAATT 60.017 38.462 0.00 0.00 0.00 1.82
172 182 4.818005 GGTGACGGAGAAGAAACCTAAAAA 59.182 41.667 0.00 0.00 0.00 1.94
201 233 1.561542 GGAGGGGTTCAGATCATGTGT 59.438 52.381 0.00 0.00 0.00 3.72
247 311 1.662686 CTCTTCTCCTCCCCCAAAGT 58.337 55.000 0.00 0.00 0.00 2.66
248 312 0.915364 CCTCTTCTCCTCCCCCAAAG 59.085 60.000 0.00 0.00 0.00 2.77
266 330 1.402456 CGATACCGGACGATTGATCCC 60.402 57.143 9.46 0.00 31.99 3.85
301 365 1.153289 CCAATCGGCACCTCCTCAG 60.153 63.158 0.00 0.00 0.00 3.35
422 486 7.439381 GTCTCGGTAATCATAAATAACTCCCA 58.561 38.462 0.00 0.00 0.00 4.37
433 497 2.363038 CCAACCCGTCTCGGTAATCATA 59.637 50.000 7.40 0.00 46.80 2.15
462 527 7.862512 AAAATTTTGAAACCAAGATGCAGAA 57.137 28.000 1.75 0.00 0.00 3.02
464 529 7.307930 GGGTAAAATTTTGAAACCAAGATGCAG 60.308 37.037 18.61 0.00 31.58 4.41
582 670 1.211949 GATTCCCTGAATCCCCGAACA 59.788 52.381 5.68 0.00 41.59 3.18
583 671 1.211949 TGATTCCCTGAATCCCCGAAC 59.788 52.381 12.82 0.00 45.37 3.95
585 673 1.421268 CATGATTCCCTGAATCCCCGA 59.579 52.381 12.82 0.00 45.37 5.14
586 674 1.143684 ACATGATTCCCTGAATCCCCG 59.856 52.381 12.82 5.43 45.37 5.73
587 675 3.117360 AGAACATGATTCCCTGAATCCCC 60.117 47.826 12.82 0.79 45.37 4.81
590 678 4.785301 TGGAGAACATGATTCCCTGAATC 58.215 43.478 0.00 9.36 45.93 2.52
591 679 4.868172 TGGAGAACATGATTCCCTGAAT 57.132 40.909 0.00 0.00 34.71 2.57
592 680 4.868172 ATGGAGAACATGATTCCCTGAA 57.132 40.909 0.00 0.00 38.70 3.02
593 681 4.868172 AATGGAGAACATGATTCCCTGA 57.132 40.909 0.00 0.00 40.44 3.86
597 685 7.388776 TCGATATGAAATGGAGAACATGATTCC 59.611 37.037 0.00 3.80 40.44 3.01
599 687 8.681486 TTCGATATGAAATGGAGAACATGATT 57.319 30.769 0.00 0.00 40.44 2.57
600 688 8.859236 ATTCGATATGAAATGGAGAACATGAT 57.141 30.769 0.00 0.00 40.71 2.45
628 716 3.554934 TGCACAAGAAAACAGAGGACAT 58.445 40.909 0.00 0.00 0.00 3.06
652 740 0.618680 ACAGGCATGGGCTCTGACTA 60.619 55.000 2.31 0.00 39.32 2.59
654 742 0.253044 TTACAGGCATGGGCTCTGAC 59.747 55.000 2.31 0.00 39.32 3.51
671 759 8.500753 ACTCATACGGAAATGCTGTAATTTTA 57.499 30.769 0.00 0.00 41.49 1.52
723 820 4.792068 AGATGAACAAACAAACTCAGGGA 58.208 39.130 0.00 0.00 0.00 4.20
730 827 6.619801 ACAGGTAGAGATGAACAAACAAAC 57.380 37.500 0.00 0.00 0.00 2.93
931 1037 6.599356 TTAGTACTTGGATGCTTGACAGTA 57.401 37.500 0.00 0.00 0.00 2.74
934 1040 5.643348 CACATTAGTACTTGGATGCTTGACA 59.357 40.000 0.00 0.00 0.00 3.58
961 1081 4.074970 CCTCAGCTGAAACAACAAGGTAT 58.925 43.478 18.85 0.00 0.00 2.73
1158 1278 4.821260 TCTCCTCTCTTCTCTGATTGATCG 59.179 45.833 0.00 0.00 0.00 3.69
1226 1346 2.304761 TCCTTTTGGGGTGTAGCTGTAG 59.695 50.000 0.00 0.00 40.87 2.74
1273 1393 4.220382 TGGGTTTGATTTCTGGTTAGCATG 59.780 41.667 0.00 0.00 0.00 4.06
1281 1401 1.895131 CCCTGTGGGTTTGATTTCTGG 59.105 52.381 0.00 0.00 38.25 3.86
1326 1446 2.420687 GGGGATACTGAAACCAGCTCTG 60.421 54.545 0.00 0.00 35.09 3.35
1446 1566 6.486657 GGCATACCATAGCATTGTAGAGAAAA 59.513 38.462 0.00 0.00 35.26 2.29
1513 1633 2.326428 TCCCGGATGGAGGAAGTAATC 58.674 52.381 0.73 0.00 38.61 1.75
1540 1660 1.370064 CTTCCGTTGTCCTCCGGTT 59.630 57.895 0.00 0.00 44.51 4.44
1541 1661 3.057337 CTTCCGTTGTCCTCCGGT 58.943 61.111 0.00 0.00 44.51 5.28
1546 1666 1.371558 GACTGGCTTCCGTTGTCCT 59.628 57.895 0.00 0.00 0.00 3.85
1561 1681 0.396811 AGCAGCCTTGTAAACGGACT 59.603 50.000 0.00 0.00 0.00 3.85
1565 1685 0.517316 GTCCAGCAGCCTTGTAAACG 59.483 55.000 0.00 0.00 0.00 3.60
1585 1709 3.119096 GGAAGAGCGAACGCCCAC 61.119 66.667 15.44 7.85 43.17 4.61
1588 1712 2.509561 GAGGGAAGAGCGAACGCC 60.510 66.667 15.44 7.46 43.17 5.68
1606 1730 0.322546 AAACGGCACTGAGGGGAATC 60.323 55.000 0.00 0.00 0.00 2.52
1616 1740 4.759693 TGTATTGAAATCTGAAACGGCACT 59.240 37.500 0.00 0.00 0.00 4.40
1647 1771 3.814283 TGTTTTTATCCCCACGTACACAC 59.186 43.478 0.00 0.00 0.00 3.82
1650 1774 4.620589 TCTGTTTTTATCCCCACGTACA 57.379 40.909 0.00 0.00 0.00 2.90
1654 1791 3.065371 GCTGATCTGTTTTTATCCCCACG 59.935 47.826 1.27 0.00 0.00 4.94
1658 1795 4.873827 TGTACGCTGATCTGTTTTTATCCC 59.126 41.667 1.27 0.00 0.00 3.85
1687 1834 6.811170 CCGCAACATCAATTAATTGGTACTTT 59.189 34.615 24.40 11.07 38.30 2.66
1699 1846 7.859325 AGTATAGTTTACCGCAACATCAATT 57.141 32.000 0.00 0.00 0.00 2.32
1705 1852 6.225318 ACTCAAAGTATAGTTTACCGCAACA 58.775 36.000 5.23 0.00 0.00 3.33
1710 1857 8.470040 TTGCTAACTCAAAGTATAGTTTACCG 57.530 34.615 5.23 0.75 37.19 4.02
1742 1889 7.033185 GGTAAATGGAACTTTCATGCGTTTAT 58.967 34.615 0.00 0.00 0.00 1.40
1748 1895 5.048083 TGTCTGGTAAATGGAACTTTCATGC 60.048 40.000 0.00 0.00 0.00 4.06
1840 1990 2.813754 TGACAAAACCATCTGCTACAGC 59.186 45.455 0.00 0.00 42.50 4.40
1849 1999 6.758886 CAGGTCTCTATACTGACAAAACCATC 59.241 42.308 0.00 0.00 35.11 3.51
1858 2008 7.569639 TGTAATCACAGGTCTCTATACTGAC 57.430 40.000 0.00 0.00 36.17 3.51
1897 2047 7.397192 AGGTCAATTTTTGGACAGCAATATAGT 59.603 33.333 0.00 0.00 35.74 2.12
1898 2048 7.775120 AGGTCAATTTTTGGACAGCAATATAG 58.225 34.615 0.00 0.00 35.74 1.31
1917 2076 6.707440 TGCAAAATTCTAAACAGAGGTCAA 57.293 33.333 0.00 0.00 0.00 3.18
1934 2093 8.273780 AGAACCAAATTTACAACATTGCAAAA 57.726 26.923 1.71 0.00 28.24 2.44
1938 2097 8.532977 ACATAGAACCAAATTTACAACATTGC 57.467 30.769 0.00 0.00 0.00 3.56
1977 2137 9.430623 TGTGAGTGTTGAATTAAGATTATCGAA 57.569 29.630 0.00 0.00 0.00 3.71
1978 2138 8.996024 TGTGAGTGTTGAATTAAGATTATCGA 57.004 30.769 0.00 0.00 0.00 3.59
2002 2162 8.800972 GTGAGCACATATGTATTTGAACATTTG 58.199 33.333 8.32 6.06 41.65 2.32
2008 2168 7.122501 ACATTGGTGAGCACATATGTATTTGAA 59.877 33.333 8.32 0.00 36.09 2.69
2036 2215 7.012989 CCTGCAACAGATCATAATCATTTCAGA 59.987 37.037 0.00 0.00 31.33 3.27
2136 2315 6.371825 GGAAGGAGAAAACATCGTTACTGAAT 59.628 38.462 0.00 0.00 0.00 2.57
2220 2399 6.431234 CAGTAGAAGGAAAACAATAGGTGCTT 59.569 38.462 0.00 0.00 0.00 3.91
2227 2406 8.974060 AAGTGAACAGTAGAAGGAAAACAATA 57.026 30.769 0.00 0.00 0.00 1.90
2228 2407 7.775561 AGAAGTGAACAGTAGAAGGAAAACAAT 59.224 33.333 0.00 0.00 0.00 2.71
2235 2414 9.847224 AATAAAAAGAAGTGAACAGTAGAAGGA 57.153 29.630 0.00 0.00 0.00 3.36
2237 2416 9.387123 GCAATAAAAAGAAGTGAACAGTAGAAG 57.613 33.333 0.00 0.00 0.00 2.85
2302 2482 8.372459 TGGCTAACATTGTAACCCTGTATATAG 58.628 37.037 0.00 0.00 0.00 1.31
2303 2483 8.152246 GTGGCTAACATTGTAACCCTGTATATA 58.848 37.037 0.00 0.00 0.00 0.86
2304 2484 6.996282 GTGGCTAACATTGTAACCCTGTATAT 59.004 38.462 0.00 0.00 0.00 0.86
2324 2504 1.206849 CAACAACTGGTTTTGGTGGCT 59.793 47.619 0.00 0.00 40.03 4.75
2340 2520 5.125900 CCCTGCTGATGAATATTTGACAACA 59.874 40.000 0.00 0.00 0.00 3.33
2394 2574 1.740332 TTCGTCGGCACTGTCCTTGA 61.740 55.000 0.00 0.00 0.00 3.02
2454 2634 7.303182 TCCTGTTCTTCAGAAGAGTGATTAA 57.697 36.000 12.74 0.00 46.27 1.40
2503 2683 5.008118 GCTATTTGTGGCAGAAGAGTATTCC 59.992 44.000 0.00 0.00 0.00 3.01
2623 2803 3.568538 CTTTTTCTTGACAGGGCAATCG 58.431 45.455 0.00 0.00 0.00 3.34
3055 3235 7.681679 TCATGGATGTGTTAAGTGGTTAAGTA 58.318 34.615 0.00 0.00 0.00 2.24
3060 3240 5.569355 TCATCATGGATGTGTTAAGTGGTT 58.431 37.500 6.15 0.00 40.55 3.67
3091 3271 8.751242 TGAAAATAATCAGGCTCATCAATGAAA 58.249 29.630 0.00 0.00 36.18 2.69
3108 3288 5.526506 GCATCCAGCTTCCTGAAAATAAT 57.473 39.130 0.00 0.00 41.77 1.28
3122 3302 2.911484 ACACTAGCTAAAGCATCCAGC 58.089 47.619 4.54 0.00 45.16 4.85
3138 3318 4.097589 GGTCGCAGTAGGAATAGTAACACT 59.902 45.833 0.00 0.00 0.00 3.55
3139 3319 4.142315 TGGTCGCAGTAGGAATAGTAACAC 60.142 45.833 0.00 0.00 0.00 3.32
3146 3326 1.479323 GTGGTGGTCGCAGTAGGAATA 59.521 52.381 0.00 0.00 0.00 1.75
3446 3629 3.953775 ACCGAACAGCCCTGGTGG 61.954 66.667 0.00 0.99 35.13 4.61
3575 3758 2.099652 CTGGAGCACTGACGGAACCA 62.100 60.000 0.00 0.00 0.00 3.67
3605 3788 0.326264 GGTGTGAGAGATTGGCCTGT 59.674 55.000 3.32 0.00 0.00 4.00
3782 3965 2.916702 TCATTGATGGAGGATGACGG 57.083 50.000 0.00 0.00 0.00 4.79
3794 3977 1.202976 GGGTAGCCCTGCATCATTGAT 60.203 52.381 0.00 0.00 41.34 2.57
3999 4200 2.602257 ACGAAGCTATGCATGCTGTA 57.398 45.000 20.33 10.88 41.03 2.74
4075 4277 1.205893 AGAACCGTCCTCTGCATTCTC 59.794 52.381 0.00 0.00 0.00 2.87
4182 4384 1.147153 GCAGCTCACCCTCATACCC 59.853 63.158 0.00 0.00 0.00 3.69
4184 4386 2.035632 AGTAGCAGCTCACCCTCATAC 58.964 52.381 0.00 0.00 0.00 2.39
4194 4396 1.134965 CACCAGGTGTAGTAGCAGCTC 60.135 57.143 11.99 0.00 44.27 4.09
4198 4400 3.849563 AAAACACCAGGTGTAGTAGCA 57.150 42.857 26.17 0.00 46.79 3.49
4296 4523 6.095720 ACCAACTCCGTCTGTTTCAAAATAAA 59.904 34.615 0.00 0.00 0.00 1.40
4303 4530 2.702592 AACCAACTCCGTCTGTTTCA 57.297 45.000 0.00 0.00 0.00 2.69
4356 4583 4.340894 TGATTGATTTAACGCACAGAGC 57.659 40.909 0.00 0.00 40.87 4.09
4357 4584 7.008628 GGATTTTGATTGATTTAACGCACAGAG 59.991 37.037 0.00 0.00 0.00 3.35
4358 4585 6.806249 GGATTTTGATTGATTTAACGCACAGA 59.194 34.615 0.00 0.00 0.00 3.41
4359 4586 6.034898 GGGATTTTGATTGATTTAACGCACAG 59.965 38.462 0.00 0.00 0.00 3.66
4360 4587 5.866633 GGGATTTTGATTGATTTAACGCACA 59.133 36.000 0.00 0.00 0.00 4.57
4361 4588 6.099341 AGGGATTTTGATTGATTTAACGCAC 58.901 36.000 0.00 0.00 0.00 5.34
4362 4589 6.071672 TGAGGGATTTTGATTGATTTAACGCA 60.072 34.615 0.00 0.00 0.00 5.24
4363 4590 6.329496 TGAGGGATTTTGATTGATTTAACGC 58.671 36.000 0.00 0.00 0.00 4.84
4364 4591 7.975616 ACATGAGGGATTTTGATTGATTTAACG 59.024 33.333 0.00 0.00 0.00 3.18
4365 4592 9.657419 AACATGAGGGATTTTGATTGATTTAAC 57.343 29.630 0.00 0.00 0.00 2.01
4368 4595 9.826574 CATAACATGAGGGATTTTGATTGATTT 57.173 29.630 0.00 0.00 0.00 2.17
4369 4596 9.204337 TCATAACATGAGGGATTTTGATTGATT 57.796 29.630 0.00 0.00 33.59 2.57
4370 4597 8.771521 TCATAACATGAGGGATTTTGATTGAT 57.228 30.769 0.00 0.00 33.59 2.57
4385 4612 3.199727 TGCTGCTAACCCTCATAACATGA 59.800 43.478 0.00 0.00 37.76 3.07
4386 4613 3.544684 TGCTGCTAACCCTCATAACATG 58.455 45.455 0.00 0.00 0.00 3.21
4387 4614 3.813443 CTGCTGCTAACCCTCATAACAT 58.187 45.455 0.00 0.00 0.00 2.71
4388 4615 2.680805 GCTGCTGCTAACCCTCATAACA 60.681 50.000 8.53 0.00 36.03 2.41
4389 4616 1.943340 GCTGCTGCTAACCCTCATAAC 59.057 52.381 8.53 0.00 36.03 1.89
4390 4617 2.332063 GCTGCTGCTAACCCTCATAA 57.668 50.000 8.53 0.00 36.03 1.90
4392 4619 4.972875 GCTGCTGCTAACCCTCAT 57.027 55.556 8.53 0.00 36.03 2.90
4402 4629 0.393537 ACAACCATAGGAGCTGCTGC 60.394 55.000 19.25 13.74 40.05 5.25
4403 4630 1.065926 TGACAACCATAGGAGCTGCTG 60.066 52.381 19.25 3.50 0.00 4.41
4404 4631 1.279496 TGACAACCATAGGAGCTGCT 58.721 50.000 13.92 13.92 0.00 4.24
4405 4632 2.012673 CTTGACAACCATAGGAGCTGC 58.987 52.381 0.00 0.00 0.00 5.25
4406 4633 3.005554 CACTTGACAACCATAGGAGCTG 58.994 50.000 0.00 0.00 0.00 4.24
4407 4634 2.616510 GCACTTGACAACCATAGGAGCT 60.617 50.000 0.00 0.00 0.00 4.09
4408 4635 1.740025 GCACTTGACAACCATAGGAGC 59.260 52.381 0.00 0.00 0.00 4.70
4409 4636 3.340814 AGCACTTGACAACCATAGGAG 57.659 47.619 0.00 0.00 0.00 3.69
4410 4637 3.055385 GGTAGCACTTGACAACCATAGGA 60.055 47.826 0.00 0.00 0.00 2.94
4411 4638 3.270877 GGTAGCACTTGACAACCATAGG 58.729 50.000 0.00 0.00 0.00 2.57
4412 4639 3.684788 GTGGTAGCACTTGACAACCATAG 59.315 47.826 17.69 0.00 41.93 2.23
4413 4640 3.326588 AGTGGTAGCACTTGACAACCATA 59.673 43.478 21.62 0.00 41.93 2.74
4414 4641 2.106511 AGTGGTAGCACTTGACAACCAT 59.893 45.455 21.62 0.00 41.93 3.55
4415 4642 1.488812 AGTGGTAGCACTTGACAACCA 59.511 47.619 21.62 0.00 37.88 3.67
4416 4643 2.256117 AGTGGTAGCACTTGACAACC 57.744 50.000 21.62 0.00 29.93 3.77
4417 4644 3.493503 GTGTAGTGGTAGCACTTGACAAC 59.506 47.826 30.71 21.98 36.68 3.32
4418 4645 3.493699 GGTGTAGTGGTAGCACTTGACAA 60.494 47.826 30.71 11.45 36.68 3.18
4419 4646 2.036733 GGTGTAGTGGTAGCACTTGACA 59.963 50.000 30.71 25.40 36.68 3.58
4420 4647 2.299297 AGGTGTAGTGGTAGCACTTGAC 59.701 50.000 30.71 24.46 36.68 3.18
4421 4648 2.299013 CAGGTGTAGTGGTAGCACTTGA 59.701 50.000 30.71 15.86 40.96 3.02
4422 4649 2.612972 CCAGGTGTAGTGGTAGCACTTG 60.613 54.545 30.71 21.51 39.10 3.16
4423 4650 1.623811 CCAGGTGTAGTGGTAGCACTT 59.376 52.381 30.71 15.83 36.68 3.16
4424 4651 1.267121 CCAGGTGTAGTGGTAGCACT 58.733 55.000 28.84 28.84 39.08 4.40
4425 4652 0.974383 ACCAGGTGTAGTGGTAGCAC 59.026 55.000 17.29 17.29 46.96 4.40
4426 4653 3.468552 ACCAGGTGTAGTGGTAGCA 57.531 52.632 0.00 0.00 46.96 3.49
4431 4658 1.981256 AAAAGCACCAGGTGTAGTGG 58.019 50.000 21.26 0.00 41.30 4.00
4432 4659 2.032030 CGAAAAAGCACCAGGTGTAGTG 60.032 50.000 21.26 1.61 35.75 2.74
4433 4660 2.218603 CGAAAAAGCACCAGGTGTAGT 58.781 47.619 21.26 3.46 35.75 2.73
4434 4661 2.218603 ACGAAAAAGCACCAGGTGTAG 58.781 47.619 21.26 3.71 35.75 2.74
4435 4662 2.335316 ACGAAAAAGCACCAGGTGTA 57.665 45.000 21.26 0.00 35.75 2.90
4436 4663 1.944709 GTACGAAAAAGCACCAGGTGT 59.055 47.619 21.26 5.18 35.75 4.16
4437 4664 2.218603 AGTACGAAAAAGCACCAGGTG 58.781 47.619 16.16 16.16 36.51 4.00
4438 4665 2.104281 AGAGTACGAAAAAGCACCAGGT 59.896 45.455 0.00 0.00 0.00 4.00
4439 4666 2.767505 AGAGTACGAAAAAGCACCAGG 58.232 47.619 0.00 0.00 0.00 4.45
4440 4667 4.035208 ACAAAGAGTACGAAAAAGCACCAG 59.965 41.667 0.00 0.00 0.00 4.00
4441 4668 3.942748 ACAAAGAGTACGAAAAAGCACCA 59.057 39.130 0.00 0.00 0.00 4.17
4442 4669 4.547406 ACAAAGAGTACGAAAAAGCACC 57.453 40.909 0.00 0.00 0.00 5.01
4443 4670 6.025280 TGAAACAAAGAGTACGAAAAAGCAC 58.975 36.000 0.00 0.00 0.00 4.40
4444 4671 6.184580 TGAAACAAAGAGTACGAAAAAGCA 57.815 33.333 0.00 0.00 0.00 3.91
4445 4672 7.500807 TTTGAAACAAAGAGTACGAAAAAGC 57.499 32.000 0.00 0.00 0.00 3.51
4461 4688 9.645059 TGAAGTCACAACATTTATTTTGAAACA 57.355 25.926 0.00 0.00 0.00 2.83
4463 4690 9.868277 ACTGAAGTCACAACATTTATTTTGAAA 57.132 25.926 0.00 0.00 0.00 2.69
4464 4691 9.868277 AACTGAAGTCACAACATTTATTTTGAA 57.132 25.926 0.00 0.00 0.00 2.69
4465 4692 9.515020 GAACTGAAGTCACAACATTTATTTTGA 57.485 29.630 0.00 0.00 0.00 2.69
4466 4693 9.299963 TGAACTGAAGTCACAACATTTATTTTG 57.700 29.630 0.00 0.00 0.00 2.44
4467 4694 9.868277 TTGAACTGAAGTCACAACATTTATTTT 57.132 25.926 0.00 0.00 0.00 1.82
4468 4695 9.868277 TTTGAACTGAAGTCACAACATTTATTT 57.132 25.926 3.60 0.00 0.00 1.40
4471 4698 9.299963 CAATTTGAACTGAAGTCACAACATTTA 57.700 29.630 0.00 0.00 0.00 1.40
4472 4699 7.818930 ACAATTTGAACTGAAGTCACAACATTT 59.181 29.630 2.79 0.00 0.00 2.32
4473 4700 7.322664 ACAATTTGAACTGAAGTCACAACATT 58.677 30.769 2.79 4.90 0.00 2.71
4474 4701 6.866480 ACAATTTGAACTGAAGTCACAACAT 58.134 32.000 2.79 0.79 0.00 2.71
4475 4702 6.266168 ACAATTTGAACTGAAGTCACAACA 57.734 33.333 2.79 0.00 0.00 3.33
4476 4703 7.328249 TGAAACAATTTGAACTGAAGTCACAAC 59.672 33.333 2.79 0.00 0.00 3.32
4477 4704 7.374272 TGAAACAATTTGAACTGAAGTCACAA 58.626 30.769 2.79 0.00 0.00 3.33
4478 4705 6.918626 TGAAACAATTTGAACTGAAGTCACA 58.081 32.000 2.79 0.00 0.00 3.58
4479 4706 7.810766 TTGAAACAATTTGAACTGAAGTCAC 57.189 32.000 2.79 0.00 0.00 3.67
4480 4707 8.824159 TTTTGAAACAATTTGAACTGAAGTCA 57.176 26.923 2.79 0.00 0.00 3.41
4533 4760 9.458374 CCAAAATATGTGTCGTTCTTTTACTTT 57.542 29.630 0.00 0.00 0.00 2.66
4534 4761 8.842280 TCCAAAATATGTGTCGTTCTTTTACTT 58.158 29.630 0.00 0.00 0.00 2.24
4535 4762 8.385898 TCCAAAATATGTGTCGTTCTTTTACT 57.614 30.769 0.00 0.00 0.00 2.24
4536 4763 8.898792 GTTCCAAAATATGTGTCGTTCTTTTAC 58.101 33.333 0.00 0.00 0.00 2.01
4537 4764 8.622157 TGTTCCAAAATATGTGTCGTTCTTTTA 58.378 29.630 0.00 0.00 0.00 1.52
4538 4765 7.484975 TGTTCCAAAATATGTGTCGTTCTTTT 58.515 30.769 0.00 0.00 0.00 2.27
4539 4766 7.012894 TCTGTTCCAAAATATGTGTCGTTCTTT 59.987 33.333 0.00 0.00 0.00 2.52
4540 4767 6.485313 TCTGTTCCAAAATATGTGTCGTTCTT 59.515 34.615 0.00 0.00 0.00 2.52
4541 4768 5.995282 TCTGTTCCAAAATATGTGTCGTTCT 59.005 36.000 0.00 0.00 0.00 3.01
4542 4769 6.236017 TCTGTTCCAAAATATGTGTCGTTC 57.764 37.500 0.00 0.00 0.00 3.95
4543 4770 6.429692 TCATCTGTTCCAAAATATGTGTCGTT 59.570 34.615 0.00 0.00 0.00 3.85
4544 4771 5.937540 TCATCTGTTCCAAAATATGTGTCGT 59.062 36.000 0.00 0.00 0.00 4.34
4545 4772 6.421377 TCATCTGTTCCAAAATATGTGTCG 57.579 37.500 0.00 0.00 0.00 4.35
4546 4773 7.820648 ACTTCATCTGTTCCAAAATATGTGTC 58.179 34.615 0.00 0.00 0.00 3.67
4547 4774 7.765695 ACTTCATCTGTTCCAAAATATGTGT 57.234 32.000 0.00 0.00 0.00 3.72
4553 4780 9.750125 GTTTCTTAACTTCATCTGTTCCAAAAT 57.250 29.630 0.00 0.00 0.00 1.82
4554 4781 8.744652 TGTTTCTTAACTTCATCTGTTCCAAAA 58.255 29.630 0.00 0.00 35.24 2.44
4555 4782 8.287439 TGTTTCTTAACTTCATCTGTTCCAAA 57.713 30.769 0.00 0.00 35.24 3.28
4556 4783 7.873719 TGTTTCTTAACTTCATCTGTTCCAA 57.126 32.000 0.00 0.00 35.24 3.53
4557 4784 7.095229 CGATGTTTCTTAACTTCATCTGTTCCA 60.095 37.037 0.00 0.00 37.96 3.53
4558 4785 7.237173 CGATGTTTCTTAACTTCATCTGTTCC 58.763 38.462 0.00 0.00 37.96 3.62
4559 4786 7.095187 ACCGATGTTTCTTAACTTCATCTGTTC 60.095 37.037 0.00 0.00 37.96 3.18
4560 4787 6.710744 ACCGATGTTTCTTAACTTCATCTGTT 59.289 34.615 0.00 0.00 37.96 3.16
4561 4788 6.231211 ACCGATGTTTCTTAACTTCATCTGT 58.769 36.000 0.00 0.00 37.96 3.41
4562 4789 6.727824 ACCGATGTTTCTTAACTTCATCTG 57.272 37.500 0.00 0.00 37.96 2.90
4563 4790 6.348540 GCAACCGATGTTTCTTAACTTCATCT 60.349 38.462 0.00 0.00 37.96 2.90
4564 4791 5.795441 GCAACCGATGTTTCTTAACTTCATC 59.205 40.000 0.00 0.00 37.96 2.92
4565 4792 5.335661 GGCAACCGATGTTTCTTAACTTCAT 60.336 40.000 0.00 0.00 37.96 2.57
4566 4793 4.023536 GGCAACCGATGTTTCTTAACTTCA 60.024 41.667 0.00 0.00 37.96 3.02
4567 4794 4.473199 GGCAACCGATGTTTCTTAACTTC 58.527 43.478 0.00 0.00 35.93 3.01
4568 4795 4.499037 GGCAACCGATGTTTCTTAACTT 57.501 40.909 0.00 0.00 35.24 2.66
4590 4817 2.165319 AACCCACAGAGCGTTAGAAC 57.835 50.000 0.00 0.00 0.00 3.01
4620 4847 1.087771 GGCTAAACCATCGTCCCACG 61.088 60.000 0.00 0.00 40.03 4.94
4624 4851 1.429148 CGCAGGCTAAACCATCGTCC 61.429 60.000 0.00 0.00 43.14 4.79
4659 4886 1.836383 GTCTTCACACTCGTTGTCGT 58.164 50.000 0.00 0.00 35.67 4.34
4665 4892 1.306148 TCAGTCGTCTTCACACTCGT 58.694 50.000 0.00 0.00 0.00 4.18
4666 4893 2.401017 TTCAGTCGTCTTCACACTCG 57.599 50.000 0.00 0.00 0.00 4.18
4667 4894 3.487574 CAGTTTCAGTCGTCTTCACACTC 59.512 47.826 0.00 0.00 0.00 3.51
4668 4895 3.448686 CAGTTTCAGTCGTCTTCACACT 58.551 45.455 0.00 0.00 0.00 3.55
4669 4896 2.540101 CCAGTTTCAGTCGTCTTCACAC 59.460 50.000 0.00 0.00 0.00 3.82
4670 4897 2.429250 TCCAGTTTCAGTCGTCTTCACA 59.571 45.455 0.00 0.00 0.00 3.58
4671 4898 3.093717 TCCAGTTTCAGTCGTCTTCAC 57.906 47.619 0.00 0.00 0.00 3.18
4672 4899 3.383505 TCTTCCAGTTTCAGTCGTCTTCA 59.616 43.478 0.00 0.00 0.00 3.02
4673 4900 3.978687 TCTTCCAGTTTCAGTCGTCTTC 58.021 45.455 0.00 0.00 0.00 2.87
4674 4901 4.402056 TTCTTCCAGTTTCAGTCGTCTT 57.598 40.909 0.00 0.00 0.00 3.01
4675 4902 4.099573 TCTTTCTTCCAGTTTCAGTCGTCT 59.900 41.667 0.00 0.00 0.00 4.18
4676 4903 4.369182 TCTTTCTTCCAGTTTCAGTCGTC 58.631 43.478 0.00 0.00 0.00 4.20
4695 4922 3.335579 GGAACAAAGCCACGACTATCTT 58.664 45.455 0.00 0.00 0.00 2.40
4696 4923 2.354805 GGGAACAAAGCCACGACTATCT 60.355 50.000 0.00 0.00 0.00 1.98
4697 4924 2.007608 GGGAACAAAGCCACGACTATC 58.992 52.381 0.00 0.00 0.00 2.08
4699 4926 1.053424 AGGGAACAAAGCCACGACTA 58.947 50.000 0.00 0.00 0.00 2.59
4701 4928 1.029681 AAAGGGAACAAAGCCACGAC 58.970 50.000 0.00 0.00 0.00 4.34
4702 4929 1.770294 AAAAGGGAACAAAGCCACGA 58.230 45.000 0.00 0.00 0.00 4.35
4704 4931 5.468540 AGATAAAAAGGGAACAAAGCCAC 57.531 39.130 0.00 0.00 0.00 5.01
4705 4932 5.221621 CCAAGATAAAAAGGGAACAAAGCCA 60.222 40.000 0.00 0.00 0.00 4.75
4706 4933 5.011635 TCCAAGATAAAAAGGGAACAAAGCC 59.988 40.000 0.00 0.00 0.00 4.35
4707 4934 5.926542 GTCCAAGATAAAAAGGGAACAAAGC 59.073 40.000 0.00 0.00 0.00 3.51
4708 4935 7.147976 CAGTCCAAGATAAAAAGGGAACAAAG 58.852 38.462 0.00 0.00 0.00 2.77
4709 4936 6.462347 GCAGTCCAAGATAAAAAGGGAACAAA 60.462 38.462 0.00 0.00 0.00 2.83
4710 4937 5.010617 GCAGTCCAAGATAAAAAGGGAACAA 59.989 40.000 0.00 0.00 0.00 2.83
4711 4938 4.522789 GCAGTCCAAGATAAAAAGGGAACA 59.477 41.667 0.00 0.00 0.00 3.18
4712 4939 4.767409 AGCAGTCCAAGATAAAAAGGGAAC 59.233 41.667 0.00 0.00 0.00 3.62
4713 4940 4.998051 AGCAGTCCAAGATAAAAAGGGAA 58.002 39.130 0.00 0.00 0.00 3.97
4714 4941 4.657814 AGCAGTCCAAGATAAAAAGGGA 57.342 40.909 0.00 0.00 0.00 4.20
4715 4942 6.350194 GGTTAAGCAGTCCAAGATAAAAAGGG 60.350 42.308 0.00 0.00 0.00 3.95
4717 4944 6.621613 GGGTTAAGCAGTCCAAGATAAAAAG 58.378 40.000 7.03 0.00 0.00 2.27
4718 4945 5.182380 CGGGTTAAGCAGTCCAAGATAAAAA 59.818 40.000 7.03 0.00 0.00 1.94
4773 5013 7.116061 ACAAAAATTGCCATGAATAACGTTC 57.884 32.000 2.82 0.00 0.00 3.95
4775 5015 7.870445 ACTAACAAAAATTGCCATGAATAACGT 59.130 29.630 0.00 0.00 0.00 3.99
4776 5016 8.238481 ACTAACAAAAATTGCCATGAATAACG 57.762 30.769 0.00 0.00 0.00 3.18
4777 5017 8.372521 CGACTAACAAAAATTGCCATGAATAAC 58.627 33.333 0.00 0.00 0.00 1.89
4780 5020 6.686630 TCGACTAACAAAAATTGCCATGAAT 58.313 32.000 0.00 0.00 0.00 2.57
4790 5030 7.778470 TTTGCCATTTTCGACTAACAAAAAT 57.222 28.000 0.00 0.00 33.94 1.82
4877 5141 2.247358 AGGGATGGCAAATCAAACGTT 58.753 42.857 0.00 0.00 0.00 3.99
4899 5163 3.760035 CGTCCACTGTCCTCCGGG 61.760 72.222 0.00 0.00 0.00 5.73
4901 5165 2.201436 CTGACGTCCACTGTCCTCCG 62.201 65.000 14.12 0.00 35.46 4.63
4902 5166 1.587054 CTGACGTCCACTGTCCTCC 59.413 63.158 14.12 0.00 35.46 4.30
4903 5167 1.080434 GCTGACGTCCACTGTCCTC 60.080 63.158 14.12 0.00 35.46 3.71
4904 5168 1.531840 AGCTGACGTCCACTGTCCT 60.532 57.895 14.12 0.00 35.46 3.85
4905 5169 1.373497 CAGCTGACGTCCACTGTCC 60.373 63.158 20.91 1.28 35.46 4.02
4906 5170 0.032130 TTCAGCTGACGTCCACTGTC 59.968 55.000 25.40 6.34 36.88 3.51
4907 5171 0.681733 ATTCAGCTGACGTCCACTGT 59.318 50.000 25.40 11.60 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.