Multiple sequence alignment - TraesCS5D01G266000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G266000 chr5D 100.000 2858 0 0 1 2858 370312837 370309980 0.000000e+00 5278.0
1 TraesCS5D01G266000 chr5B 92.303 1624 92 19 683 2294 439651815 439650213 0.000000e+00 2276.0
2 TraesCS5D01G266000 chr5B 91.228 285 24 1 85 368 476122346 476122630 1.240000e-103 387.0
3 TraesCS5D01G266000 chr5B 77.891 294 37 12 2514 2806 439649664 439649398 1.060000e-34 158.0
4 TraesCS5D01G266000 chr5A 88.582 1375 91 30 623 1971 472704187 472702853 0.000000e+00 1609.0
5 TraesCS5D01G266000 chr5A 87.000 100 10 3 365 463 694498440 694498537 3.010000e-20 110.0
6 TraesCS5D01G266000 chr1D 94.580 369 19 1 1 368 309533765 309533397 1.150000e-158 569.0
7 TraesCS5D01G266000 chr1D 93.506 154 9 1 462 614 309533407 309533254 7.970000e-56 228.0
8 TraesCS5D01G266000 chr1D 79.279 222 43 3 2638 2857 418112255 418112475 4.930000e-33 152.0
9 TraesCS5D01G266000 chr7D 93.767 369 22 1 1 368 638595962 638596330 1.160000e-153 553.0
10 TraesCS5D01G266000 chr7D 93.865 163 9 1 462 623 638596320 638596482 7.910000e-61 244.0
11 TraesCS5D01G266000 chr2A 93.225 369 24 1 1 368 61670078 61669710 2.500000e-150 542.0
12 TraesCS5D01G266000 chr2A 92.638 163 11 1 462 623 61669720 61669558 1.710000e-57 233.0
13 TraesCS5D01G266000 chr6D 92.412 369 27 1 1 368 16102049 16102417 2.520000e-145 525.0
14 TraesCS5D01G266000 chr6D 98.000 50 1 0 574 623 16102570 16102619 1.410000e-13 87.9
15 TraesCS5D01G266000 chr6A 92.623 366 25 2 4 368 522067024 522066660 2.520000e-145 525.0
16 TraesCS5D01G266000 chr6A 91.566 166 12 2 462 626 522066670 522066506 7.970000e-56 228.0
17 TraesCS5D01G266000 chr6A 87.879 99 10 2 365 463 539628061 539627965 6.470000e-22 115.0
18 TraesCS5D01G266000 chr3B 92.412 369 27 1 1 368 568937328 568936960 2.520000e-145 525.0
19 TraesCS5D01G266000 chr3B 93.789 161 9 1 464 623 568936968 568936808 1.020000e-59 241.0
20 TraesCS5D01G266000 chr7A 89.730 370 34 3 1 368 127637949 127637582 1.200000e-128 470.0
21 TraesCS5D01G266000 chr2B 89.702 369 37 1 1 368 102819826 102820194 1.200000e-128 470.0
22 TraesCS5D01G266000 chr2B 85.185 162 16 4 461 621 102820184 102820338 2.950000e-35 159.0
23 TraesCS5D01G266000 chr6B 85.232 237 31 4 2623 2857 145449845 145450079 1.020000e-59 241.0
24 TraesCS5D01G266000 chr4B 87.500 104 11 2 365 468 657466269 657466370 5.000000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G266000 chr5D 370309980 370312837 2857 True 5278.00 5278 100.0000 1 2858 1 chr5D.!!$R1 2857
1 TraesCS5D01G266000 chr5B 439649398 439651815 2417 True 1217.00 2276 85.0970 683 2806 2 chr5B.!!$R1 2123
2 TraesCS5D01G266000 chr5A 472702853 472704187 1334 True 1609.00 1609 88.5820 623 1971 1 chr5A.!!$R1 1348
3 TraesCS5D01G266000 chr1D 309533254 309533765 511 True 398.50 569 94.0430 1 614 2 chr1D.!!$R1 613
4 TraesCS5D01G266000 chr7D 638595962 638596482 520 False 398.50 553 93.8160 1 623 2 chr7D.!!$F1 622
5 TraesCS5D01G266000 chr2A 61669558 61670078 520 True 387.50 542 92.9315 1 623 2 chr2A.!!$R1 622
6 TraesCS5D01G266000 chr6D 16102049 16102619 570 False 306.45 525 95.2060 1 623 2 chr6D.!!$F1 622
7 TraesCS5D01G266000 chr6A 522066506 522067024 518 True 376.50 525 92.0945 4 626 2 chr6A.!!$R2 622
8 TraesCS5D01G266000 chr3B 568936808 568937328 520 True 383.00 525 93.1005 1 623 2 chr3B.!!$R1 622
9 TraesCS5D01G266000 chr2B 102819826 102820338 512 False 314.50 470 87.4435 1 621 2 chr2B.!!$F1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 424 0.179048 CTGACTGCCCAGTGAACACA 60.179 55.0 5.53 0.0 42.66 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2328 2435 0.039617 TGCAAATGAAGTTTCGCCGG 60.04 50.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 2.105134 ACGAGACCCAATGTGGTTTACA 59.895 45.455 0.00 0.00 44.87 2.41
178 180 1.517832 GCTCGCAAAGCCCTCTAGA 59.482 57.895 0.00 0.00 45.92 2.43
264 266 3.159213 TCCCAGCAGATGACATTGTTT 57.841 42.857 0.00 0.00 0.00 2.83
297 299 4.998051 ACCCTGTATCTTGTTCCACAATT 58.002 39.130 0.00 0.00 37.48 2.32
308 310 5.261209 TGTTCCACAATTTGTCCTTCAAG 57.739 39.130 0.00 0.00 37.35 3.02
331 333 2.368311 TTAAAGGCCCCGTTCTTTGT 57.632 45.000 0.00 0.00 35.22 2.83
354 356 3.138839 TGTCCCAATATCAGATGGCATGT 59.861 43.478 3.81 0.00 35.28 3.21
368 370 4.574674 TGGCATGTCCAAGTATTTCTCT 57.425 40.909 6.42 0.00 43.21 3.10
369 371 4.264253 TGGCATGTCCAAGTATTTCTCTG 58.736 43.478 6.42 0.00 43.21 3.35
370 372 4.019411 TGGCATGTCCAAGTATTTCTCTGA 60.019 41.667 6.42 0.00 43.21 3.27
371 373 4.943705 GGCATGTCCAAGTATTTCTCTGAA 59.056 41.667 0.00 0.00 34.01 3.02
372 374 5.415701 GGCATGTCCAAGTATTTCTCTGAAA 59.584 40.000 0.00 0.00 34.01 2.69
373 375 6.317857 GCATGTCCAAGTATTTCTCTGAAAC 58.682 40.000 0.00 0.00 0.00 2.78
374 376 6.150140 GCATGTCCAAGTATTTCTCTGAAACT 59.850 38.462 0.00 0.00 0.00 2.66
375 377 7.625185 GCATGTCCAAGTATTTCTCTGAAACTC 60.625 40.741 0.00 0.00 0.00 3.01
376 378 6.231211 TGTCCAAGTATTTCTCTGAAACTCC 58.769 40.000 0.00 0.00 0.00 3.85
377 379 6.043243 TGTCCAAGTATTTCTCTGAAACTCCT 59.957 38.462 0.00 0.00 0.00 3.69
378 380 7.234782 TGTCCAAGTATTTCTCTGAAACTCCTA 59.765 37.037 0.00 0.00 0.00 2.94
379 381 7.762159 GTCCAAGTATTTCTCTGAAACTCCTAG 59.238 40.741 0.00 0.00 0.00 3.02
380 382 7.455008 TCCAAGTATTTCTCTGAAACTCCTAGT 59.545 37.037 0.00 0.00 0.00 2.57
381 383 8.097662 CCAAGTATTTCTCTGAAACTCCTAGTT 58.902 37.037 0.00 0.00 40.80 2.24
393 395 5.562298 AACTCCTAGTTTTCTGGTTAGCA 57.438 39.130 0.00 0.00 34.11 3.49
394 396 5.153950 ACTCCTAGTTTTCTGGTTAGCAG 57.846 43.478 4.89 4.89 0.00 4.24
395 397 3.935828 CTCCTAGTTTTCTGGTTAGCAGC 59.064 47.826 6.54 0.00 0.00 5.25
396 398 3.010420 CCTAGTTTTCTGGTTAGCAGCC 58.990 50.000 6.54 0.00 0.00 4.85
397 399 2.959465 AGTTTTCTGGTTAGCAGCCT 57.041 45.000 6.54 0.00 0.00 4.58
398 400 3.229697 AGTTTTCTGGTTAGCAGCCTT 57.770 42.857 6.54 0.00 0.00 4.35
399 401 4.367039 AGTTTTCTGGTTAGCAGCCTTA 57.633 40.909 6.54 0.00 0.00 2.69
400 402 4.923415 AGTTTTCTGGTTAGCAGCCTTAT 58.077 39.130 6.54 0.00 0.00 1.73
401 403 4.702131 AGTTTTCTGGTTAGCAGCCTTATG 59.298 41.667 6.54 0.00 0.00 1.90
402 404 3.281727 TTCTGGTTAGCAGCCTTATGG 57.718 47.619 6.54 0.00 0.00 2.74
419 421 3.660621 GCTGACTGCCCAGTGAAC 58.339 61.111 5.53 0.00 42.66 3.18
420 422 1.227943 GCTGACTGCCCAGTGAACA 60.228 57.895 5.53 0.00 42.66 3.18
421 423 1.510480 GCTGACTGCCCAGTGAACAC 61.510 60.000 5.53 0.00 42.66 3.32
422 424 0.179048 CTGACTGCCCAGTGAACACA 60.179 55.000 5.53 0.00 42.66 3.72
423 425 0.473755 TGACTGCCCAGTGAACACAT 59.526 50.000 5.53 0.00 42.66 3.21
424 426 1.133823 TGACTGCCCAGTGAACACATT 60.134 47.619 5.53 0.00 42.66 2.71
425 427 1.956477 GACTGCCCAGTGAACACATTT 59.044 47.619 5.53 0.00 42.66 2.32
426 428 1.682854 ACTGCCCAGTGAACACATTTG 59.317 47.619 7.68 0.00 40.75 2.32
427 429 1.682854 CTGCCCAGTGAACACATTTGT 59.317 47.619 7.68 0.00 37.67 2.83
428 430 4.443118 ACTGCCCAGTGAACACATTTGTT 61.443 43.478 7.68 0.00 40.52 2.83
429 431 2.499289 TGCCCAGTGAACACATTTGTTT 59.501 40.909 7.68 0.00 46.43 2.83
430 432 3.701542 TGCCCAGTGAACACATTTGTTTA 59.298 39.130 7.68 0.00 46.43 2.01
431 433 4.160439 TGCCCAGTGAACACATTTGTTTAA 59.840 37.500 7.68 0.00 46.43 1.52
432 434 5.112686 GCCCAGTGAACACATTTGTTTAAA 58.887 37.500 7.68 0.00 46.43 1.52
433 435 5.757808 GCCCAGTGAACACATTTGTTTAAAT 59.242 36.000 7.68 0.00 46.43 1.40
434 436 6.926272 GCCCAGTGAACACATTTGTTTAAATA 59.074 34.615 7.68 0.00 46.43 1.40
435 437 7.439655 GCCCAGTGAACACATTTGTTTAAATAA 59.560 33.333 7.68 0.00 46.43 1.40
436 438 9.319143 CCCAGTGAACACATTTGTTTAAATAAA 57.681 29.630 11.84 11.84 46.43 1.40
438 440 9.848172 CAGTGAACACATTTGTTTAAATAAAGC 57.152 29.630 14.32 2.81 46.43 3.51
439 441 9.816354 AGTGAACACATTTGTTTAAATAAAGCT 57.184 25.926 14.32 1.33 46.43 3.74
460 462 9.816354 AAAGCTTAGAAGTTTTATGCAAAAGAA 57.184 25.926 0.00 0.00 37.62 2.52
461 463 9.816354 AAGCTTAGAAGTTTTATGCAAAAGAAA 57.184 25.926 0.00 0.00 34.34 2.52
462 464 9.816354 AGCTTAGAAGTTTTATGCAAAAGAAAA 57.184 25.926 12.13 0.00 34.34 2.29
516 518 9.289303 CACGTTAAGGATTCCTTTAATTTCATG 57.711 33.333 22.63 7.74 41.69 3.07
629 682 1.815003 CTGGTGCACCTCCTTGAAATC 59.185 52.381 34.75 5.91 36.82 2.17
632 685 3.274288 GGTGCACCTCCTTGAAATCTAG 58.726 50.000 29.12 0.00 0.00 2.43
657 711 6.682611 GCAAATGGGATCCGAAATGTTTGATA 60.683 38.462 19.09 0.00 0.00 2.15
660 714 3.253432 GGGATCCGAAATGTTTGATAGGC 59.747 47.826 5.45 0.00 0.00 3.93
676 730 4.449743 TGATAGGCTGTACGTGTTGTTTTC 59.550 41.667 0.00 0.00 0.00 2.29
719 773 2.294074 GGCCTACGCAATACAAATCCA 58.706 47.619 0.00 0.00 36.38 3.41
720 774 2.032924 GGCCTACGCAATACAAATCCAC 59.967 50.000 0.00 0.00 36.38 4.02
721 775 2.032924 GCCTACGCAATACAAATCCACC 59.967 50.000 0.00 0.00 34.03 4.61
729 784 4.877251 GCAATACAAATCCACCAATGCAAT 59.123 37.500 0.00 0.00 0.00 3.56
736 791 3.011566 TCCACCAATGCAATATCCGTT 57.988 42.857 0.00 0.00 0.00 4.44
830 885 5.333566 AAGATAGTTCTGGAACCCCAAAA 57.666 39.130 9.51 0.00 42.98 2.44
832 887 2.838637 AGTTCTGGAACCCCAAAACA 57.161 45.000 9.51 0.00 44.07 2.83
867 926 2.346529 CTCCATCCTTCCCATGATCCT 58.653 52.381 0.00 0.00 0.00 3.24
872 934 2.850833 TCCTTCCCATGATCCTTCTGT 58.149 47.619 0.00 0.00 0.00 3.41
873 935 2.774234 TCCTTCCCATGATCCTTCTGTC 59.226 50.000 0.00 0.00 0.00 3.51
896 958 0.839853 GCCATATCTCTGCTCCCCCT 60.840 60.000 0.00 0.00 0.00 4.79
897 959 0.982704 CCATATCTCTGCTCCCCCTG 59.017 60.000 0.00 0.00 0.00 4.45
907 974 5.307196 TCTCTGCTCCCCCTGTATATAAAAC 59.693 44.000 0.00 0.00 0.00 2.43
908 975 4.039973 TCTGCTCCCCCTGTATATAAAACG 59.960 45.833 0.00 0.00 0.00 3.60
918 985 3.623960 TGTATATAAAACGCACAGGGCAC 59.376 43.478 0.00 0.00 45.17 5.01
959 1026 4.614535 GCGCTCATTTCTCATCAAACAACT 60.615 41.667 0.00 0.00 0.00 3.16
1218 1292 0.107703 TCATCCAGACCACGCCATTC 60.108 55.000 0.00 0.00 0.00 2.67
1241 1315 4.459089 GAGCTCCCGGAGTGCCAC 62.459 72.222 16.09 0.00 35.51 5.01
1252 1326 2.216750 GAGTGCCACGCCATGCATTT 62.217 55.000 0.00 0.00 40.07 2.32
1268 1342 6.237996 CCATGCATTTCTTGATGATTTTTCGG 60.238 38.462 0.00 0.00 0.00 4.30
1274 1348 3.125146 TCTTGATGATTTTTCGGCGACAG 59.875 43.478 10.16 0.00 0.00 3.51
1281 1355 0.319555 TTTTCGGCGACAGTCTGGAG 60.320 55.000 10.16 0.00 0.00 3.86
1282 1356 1.461091 TTTCGGCGACAGTCTGGAGT 61.461 55.000 10.16 0.00 0.00 3.85
1283 1357 1.863662 TTCGGCGACAGTCTGGAGTC 61.864 60.000 10.16 0.00 0.00 3.36
1284 1358 2.336478 CGGCGACAGTCTGGAGTCT 61.336 63.158 0.00 0.00 32.68 3.24
1285 1359 1.214062 GGCGACAGTCTGGAGTCTG 59.786 63.158 4.53 0.08 37.26 3.51
1286 1360 1.214062 GCGACAGTCTGGAGTCTGG 59.786 63.158 4.53 0.00 35.90 3.86
1287 1361 1.244697 GCGACAGTCTGGAGTCTGGA 61.245 60.000 4.53 0.00 35.90 3.86
1407 1494 1.521457 GGAGCGCATCATGGACGAA 60.521 57.895 11.47 0.00 0.00 3.85
1413 1500 0.882042 GCATCATGGACGAAGCCGAT 60.882 55.000 0.00 0.00 39.50 4.18
1641 1740 1.668151 GAAGGCGACGAAGCAAGGT 60.668 57.895 0.00 0.00 39.27 3.50
1686 1788 2.424523 GGATAACGAGGAGGAGGAGGAA 60.425 54.545 0.00 0.00 0.00 3.36
1770 1872 2.725008 GAGGTGGAGAGGATCGCG 59.275 66.667 0.00 0.00 42.67 5.87
1837 1939 4.016706 CGTCCGGGGGCAAAGTCT 62.017 66.667 0.00 0.00 0.00 3.24
1902 2004 5.812642 CGGTAGCTCAGAATGTATTTTGAGT 59.187 40.000 19.87 12.51 45.54 3.41
1961 2065 2.160205 TCCGTTCAGATTGTCGAGTCT 58.840 47.619 0.00 0.00 0.00 3.24
1962 2066 2.161808 TCCGTTCAGATTGTCGAGTCTC 59.838 50.000 0.00 0.00 0.00 3.36
1980 2084 5.548406 AGTCTCCACAATTTATATACCGGC 58.452 41.667 0.00 0.00 0.00 6.13
1988 2092 8.087750 CCACAATTTATATACCGGCAAAATGAT 58.912 33.333 0.00 0.00 0.00 2.45
1996 2100 3.426615 ACCGGCAAAATGATTAGTTGGA 58.573 40.909 0.00 0.00 0.00 3.53
2002 2106 7.255590 CCGGCAAAATGATTAGTTGGATATCTT 60.256 37.037 2.05 0.00 0.00 2.40
2006 2110 9.971922 CAAAATGATTAGTTGGATATCTTTCCC 57.028 33.333 2.05 0.00 34.67 3.97
2039 2143 2.613977 CGCATCCTCTCCCACATAATCC 60.614 54.545 0.00 0.00 0.00 3.01
2058 2162 0.320374 CCTCCTGCACGTACCAAGAA 59.680 55.000 0.00 0.00 0.00 2.52
2084 2188 1.902840 ACGCAAAGACAACAAAACCG 58.097 45.000 0.00 0.00 0.00 4.44
2134 2238 2.106477 TGCATCCTCGTTGCAACATA 57.894 45.000 28.01 14.93 46.48 2.29
2155 2259 9.685828 AACATATTTTTAACGTTGTTGCATACT 57.314 25.926 11.99 0.00 0.00 2.12
2181 2285 1.373590 GATTGAAAAGGCGGCGGCTA 61.374 55.000 36.34 20.91 37.50 3.93
2183 2287 2.744709 GAAAAGGCGGCGGCTACA 60.745 61.111 36.34 0.00 37.50 2.74
2187 2291 1.654023 AAAGGCGGCGGCTACAAATC 61.654 55.000 36.34 0.93 37.50 2.17
2188 2292 2.813226 AAGGCGGCGGCTACAAATCA 62.813 55.000 36.34 0.00 37.50 2.57
2190 2294 1.226295 GCGGCGGCTACAAATCAAC 60.226 57.895 9.78 0.00 35.83 3.18
2216 2321 0.095245 ATTTCACGATCGCAGCAACG 59.905 50.000 16.60 0.00 0.00 4.10
2278 2383 0.374758 CATCGTGCAGCGCTACAAAT 59.625 50.000 12.92 6.42 41.07 2.32
2302 2409 2.561733 CAAGCCTGCAATCTCACATG 57.438 50.000 0.00 0.00 0.00 3.21
2304 2411 0.330604 AGCCTGCAATCTCACATGGT 59.669 50.000 0.00 0.00 0.00 3.55
2305 2412 0.454600 GCCTGCAATCTCACATGGTG 59.545 55.000 0.00 0.00 34.45 4.17
2306 2413 0.454600 CCTGCAATCTCACATGGTGC 59.545 55.000 0.00 0.00 32.98 5.01
2307 2414 1.170442 CTGCAATCTCACATGGTGCA 58.830 50.000 0.00 2.26 42.62 4.57
2308 2415 1.170442 TGCAATCTCACATGGTGCAG 58.830 50.000 0.00 0.00 40.14 4.41
2309 2416 1.171308 GCAATCTCACATGGTGCAGT 58.829 50.000 0.00 0.00 35.28 4.40
2312 2419 1.817357 ATCTCACATGGTGCAGTGTG 58.183 50.000 16.63 16.63 45.37 3.82
2322 2429 2.477845 GCAGTGTGCAGCATCGAC 59.522 61.111 0.00 0.00 44.26 4.20
2323 2430 2.774126 CAGTGTGCAGCATCGACG 59.226 61.111 0.00 0.00 0.00 5.12
2324 2431 1.734117 CAGTGTGCAGCATCGACGA 60.734 57.895 0.00 0.00 0.00 4.20
2328 2435 1.008875 TGTGCAGCATCGACGACTTC 61.009 55.000 0.00 0.00 0.00 3.01
2329 2436 1.446099 TGCAGCATCGACGACTTCC 60.446 57.895 0.00 0.00 0.00 3.46
2330 2437 2.508891 GCAGCATCGACGACTTCCG 61.509 63.158 0.00 0.00 45.44 4.30
2331 2438 1.874019 CAGCATCGACGACTTCCGG 60.874 63.158 0.00 0.00 43.93 5.14
2332 2439 3.255379 GCATCGACGACTTCCGGC 61.255 66.667 0.00 0.00 44.56 6.13
2338 2445 1.372623 GACGACTTCCGGCGAAACT 60.373 57.895 9.30 0.00 43.93 2.66
2340 2447 0.942884 ACGACTTCCGGCGAAACTTC 60.943 55.000 9.30 0.00 43.93 3.01
2341 2448 0.942410 CGACTTCCGGCGAAACTTCA 60.942 55.000 9.30 0.00 33.91 3.02
2342 2449 1.439679 GACTTCCGGCGAAACTTCAT 58.560 50.000 9.30 0.00 0.00 2.57
2343 2450 1.804748 GACTTCCGGCGAAACTTCATT 59.195 47.619 9.30 0.00 0.00 2.57
2344 2451 2.225727 GACTTCCGGCGAAACTTCATTT 59.774 45.455 9.30 0.00 0.00 2.32
2345 2452 2.031157 ACTTCCGGCGAAACTTCATTTG 60.031 45.455 9.30 0.00 0.00 2.32
2346 2453 0.239879 TCCGGCGAAACTTCATTTGC 59.760 50.000 9.30 0.00 0.00 3.68
2348 2455 1.330306 CGGCGAAACTTCATTTGCAG 58.670 50.000 0.00 0.00 0.00 4.41
2349 2456 1.063031 GGCGAAACTTCATTTGCAGC 58.937 50.000 2.07 0.00 0.00 5.25
2350 2457 1.602668 GGCGAAACTTCATTTGCAGCA 60.603 47.619 0.00 0.00 0.00 4.41
2352 2459 2.091588 GCGAAACTTCATTTGCAGCATG 59.908 45.455 0.00 0.00 40.87 4.06
2353 2460 3.311106 CGAAACTTCATTTGCAGCATGT 58.689 40.909 0.00 0.00 39.31 3.21
2354 2461 3.120616 CGAAACTTCATTTGCAGCATGTG 59.879 43.478 0.00 0.00 39.31 3.21
2355 2462 2.736144 ACTTCATTTGCAGCATGTGG 57.264 45.000 0.00 5.22 39.31 4.17
2359 2466 2.523245 TCATTTGCAGCATGTGGGTTA 58.477 42.857 0.00 0.00 39.31 2.85
2372 2479 3.637769 TGTGGGTTAGAAATATTGGGCC 58.362 45.455 0.00 0.00 0.00 5.80
2373 2480 2.621526 GTGGGTTAGAAATATTGGGCCG 59.378 50.000 0.00 0.00 0.00 6.13
2374 2481 2.242708 TGGGTTAGAAATATTGGGCCGT 59.757 45.455 0.00 0.00 0.00 5.68
2375 2482 3.458857 TGGGTTAGAAATATTGGGCCGTA 59.541 43.478 0.00 0.00 0.00 4.02
2376 2483 4.070009 GGGTTAGAAATATTGGGCCGTAG 58.930 47.826 0.00 0.00 0.00 3.51
2377 2484 4.202388 GGGTTAGAAATATTGGGCCGTAGA 60.202 45.833 0.00 0.00 0.00 2.59
2378 2485 5.370679 GGTTAGAAATATTGGGCCGTAGAA 58.629 41.667 0.00 0.00 0.00 2.10
2381 2488 7.013942 GGTTAGAAATATTGGGCCGTAGAAATT 59.986 37.037 0.00 0.00 0.00 1.82
2383 2490 7.418337 AGAAATATTGGGCCGTAGAAATTTT 57.582 32.000 0.00 0.00 0.00 1.82
2384 2491 8.528044 AGAAATATTGGGCCGTAGAAATTTTA 57.472 30.769 0.00 0.00 0.00 1.52
2385 2492 8.973182 AGAAATATTGGGCCGTAGAAATTTTAA 58.027 29.630 0.00 0.00 0.00 1.52
2386 2493 9.589111 GAAATATTGGGCCGTAGAAATTTTAAA 57.411 29.630 0.00 0.00 0.00 1.52
2390 2498 7.892778 TTGGGCCGTAGAAATTTTAAAATTC 57.107 32.000 22.96 16.63 37.62 2.17
2407 2521 1.174078 TTCTCTACACCACGGCGTCA 61.174 55.000 10.85 0.00 0.00 4.35
2410 2524 2.598099 TACACCACGGCGTCAGGA 60.598 61.111 21.55 3.57 0.00 3.86
2415 2529 1.519455 CCACGGCGTCAGGATTCTC 60.519 63.158 10.85 0.00 0.00 2.87
2423 2537 2.101582 GCGTCAGGATTCTCTACACCAT 59.898 50.000 0.00 0.00 0.00 3.55
2428 2542 6.405953 CGTCAGGATTCTCTACACCATACTTT 60.406 42.308 0.00 0.00 0.00 2.66
2429 2543 6.758886 GTCAGGATTCTCTACACCATACTTTG 59.241 42.308 0.00 0.00 0.00 2.77
2430 2544 6.440647 TCAGGATTCTCTACACCATACTTTGT 59.559 38.462 0.00 0.00 0.00 2.83
2431 2545 6.536582 CAGGATTCTCTACACCATACTTTGTG 59.463 42.308 0.00 0.00 38.44 3.33
2432 2546 6.440647 AGGATTCTCTACACCATACTTTGTGA 59.559 38.462 0.00 0.00 36.35 3.58
2433 2547 6.758886 GGATTCTCTACACCATACTTTGTGAG 59.241 42.308 0.00 0.00 36.35 3.51
2434 2548 5.661056 TCTCTACACCATACTTTGTGAGG 57.339 43.478 0.00 0.00 36.35 3.86
2435 2549 4.081642 TCTCTACACCATACTTTGTGAGGC 60.082 45.833 0.00 0.00 36.35 4.70
2436 2550 1.808411 ACACCATACTTTGTGAGGCG 58.192 50.000 0.00 0.00 36.35 5.52
2437 2551 1.071699 ACACCATACTTTGTGAGGCGT 59.928 47.619 0.00 0.00 36.35 5.68
2438 2552 1.464608 CACCATACTTTGTGAGGCGTG 59.535 52.381 0.00 0.00 34.37 5.34
2439 2553 1.346395 ACCATACTTTGTGAGGCGTGA 59.654 47.619 0.00 0.00 0.00 4.35
2440 2554 2.002586 CCATACTTTGTGAGGCGTGAG 58.997 52.381 0.00 0.00 0.00 3.51
2441 2555 2.002586 CATACTTTGTGAGGCGTGAGG 58.997 52.381 0.00 0.00 0.00 3.86
2462 2576 1.019805 GCGCCAAGGTTCTCTACACC 61.020 60.000 0.00 0.00 34.06 4.16
2463 2577 0.320374 CGCCAAGGTTCTCTACACCA 59.680 55.000 0.00 0.00 36.67 4.17
2464 2578 1.066143 CGCCAAGGTTCTCTACACCAT 60.066 52.381 0.00 0.00 36.67 3.55
2465 2579 2.167693 CGCCAAGGTTCTCTACACCATA 59.832 50.000 0.00 0.00 36.67 2.74
2466 2580 3.532542 GCCAAGGTTCTCTACACCATAC 58.467 50.000 0.00 0.00 36.67 2.39
2468 2582 4.323562 GCCAAGGTTCTCTACACCATACTT 60.324 45.833 0.00 0.00 36.67 2.24
2469 2583 5.105064 GCCAAGGTTCTCTACACCATACTTA 60.105 44.000 0.00 0.00 36.67 2.24
2470 2584 6.575649 GCCAAGGTTCTCTACACCATACTTAA 60.576 42.308 0.00 0.00 36.67 1.85
2473 2908 7.735326 AGGTTCTCTACACCATACTTAATGT 57.265 36.000 0.00 0.00 36.67 2.71
2494 2929 1.537397 TGTGAAGGAGAGCCTGGCT 60.537 57.895 23.64 23.64 46.28 4.75
2495 2930 0.252239 TGTGAAGGAGAGCCTGGCTA 60.252 55.000 23.44 0.03 46.28 3.93
2529 2978 3.499737 CGCGTGAATGCCCCTGAC 61.500 66.667 0.00 0.00 0.00 3.51
2534 2983 1.869754 CGTGAATGCCCCTGACTATCG 60.870 57.143 0.00 0.00 0.00 2.92
2547 2996 2.427095 TGACTATCGACACCCTCACATG 59.573 50.000 0.00 0.00 0.00 3.21
2553 3002 2.069273 CGACACCCTCACATGTCTTTC 58.931 52.381 0.00 0.00 42.56 2.62
2554 3003 2.427506 GACACCCTCACATGTCTTTCC 58.572 52.381 0.00 0.00 41.69 3.13
2556 3005 1.056660 ACCCTCACATGTCTTTCCGT 58.943 50.000 0.00 0.00 0.00 4.69
2557 3006 1.420138 ACCCTCACATGTCTTTCCGTT 59.580 47.619 0.00 0.00 0.00 4.44
2558 3007 1.806542 CCCTCACATGTCTTTCCGTTG 59.193 52.381 0.00 0.00 0.00 4.10
2563 3012 4.915704 TCACATGTCTTTCCGTTGAAAAC 58.084 39.130 0.00 0.00 45.31 2.43
2574 3023 6.988622 TTCCGTTGAAAACTCTAAAGTCAA 57.011 33.333 0.00 0.00 46.99 3.18
2576 3025 7.562454 TCCGTTGAAAACTCTAAAGTCAATT 57.438 32.000 0.00 0.00 46.99 2.32
2580 3029 7.111593 CGTTGAAAACTCTAAAGTCAATTTCGG 59.888 37.037 0.00 0.00 46.99 4.30
2605 3055 4.339530 CCATCGATACACATCTATCCGGAT 59.660 45.833 22.95 22.95 0.00 4.18
2613 3063 4.464244 ACACATCTATCCGGATTCATCGAT 59.536 41.667 24.71 13.48 0.00 3.59
2614 3064 5.652452 ACACATCTATCCGGATTCATCGATA 59.348 40.000 24.71 0.00 0.00 2.92
2615 3065 5.974158 CACATCTATCCGGATTCATCGATAC 59.026 44.000 24.71 0.00 0.00 2.24
2616 3066 5.652452 ACATCTATCCGGATTCATCGATACA 59.348 40.000 24.71 0.00 0.00 2.29
2617 3067 5.562506 TCTATCCGGATTCATCGATACAC 57.437 43.478 24.71 0.00 0.00 2.90
2618 3068 5.254115 TCTATCCGGATTCATCGATACACT 58.746 41.667 24.71 0.00 0.00 3.55
2619 3069 4.873746 ATCCGGATTCATCGATACACTT 57.126 40.909 12.38 0.00 0.00 3.16
2620 3070 4.665833 TCCGGATTCATCGATACACTTT 57.334 40.909 0.00 0.00 0.00 2.66
2621 3071 4.617959 TCCGGATTCATCGATACACTTTC 58.382 43.478 0.00 0.00 0.00 2.62
2622 3072 4.098807 TCCGGATTCATCGATACACTTTCA 59.901 41.667 0.00 0.00 0.00 2.69
2634 3084 7.772166 TCGATACACTTTCAGATACACTTGAT 58.228 34.615 0.00 0.00 0.00 2.57
2636 3086 9.175060 CGATACACTTTCAGATACACTTGATAG 57.825 37.037 0.00 0.00 0.00 2.08
2645 3095 4.959210 AGATACACTTGATAGAGCCACTGT 59.041 41.667 0.00 0.00 0.00 3.55
2647 3097 2.899900 ACACTTGATAGAGCCACTGTCA 59.100 45.455 4.38 4.38 43.18 3.58
2653 3103 2.561478 TAGAGCCACTGTCAAAACCC 57.439 50.000 0.00 0.00 0.00 4.11
2655 3105 2.054799 AGAGCCACTGTCAAAACCCTA 58.945 47.619 0.00 0.00 0.00 3.53
2657 3107 0.881796 GCCACTGTCAAAACCCTAGC 59.118 55.000 0.00 0.00 0.00 3.42
2658 3108 1.817740 GCCACTGTCAAAACCCTAGCA 60.818 52.381 0.00 0.00 0.00 3.49
2660 3110 2.293399 CCACTGTCAAAACCCTAGCAAC 59.707 50.000 0.00 0.00 0.00 4.17
2661 3111 3.214328 CACTGTCAAAACCCTAGCAACT 58.786 45.455 0.00 0.00 0.00 3.16
2662 3112 3.251004 CACTGTCAAAACCCTAGCAACTC 59.749 47.826 0.00 0.00 0.00 3.01
2663 3113 2.480419 CTGTCAAAACCCTAGCAACTCG 59.520 50.000 0.00 0.00 0.00 4.18
2664 3114 1.804748 GTCAAAACCCTAGCAACTCGG 59.195 52.381 0.00 0.00 0.00 4.63
2665 3115 1.418637 TCAAAACCCTAGCAACTCGGT 59.581 47.619 0.00 0.00 0.00 4.69
2666 3116 1.804748 CAAAACCCTAGCAACTCGGTC 59.195 52.381 0.00 0.00 0.00 4.79
2667 3117 1.349067 AAACCCTAGCAACTCGGTCT 58.651 50.000 0.00 0.00 0.00 3.85
2668 3118 0.896226 AACCCTAGCAACTCGGTCTC 59.104 55.000 0.00 0.00 0.00 3.36
2669 3119 0.251653 ACCCTAGCAACTCGGTCTCA 60.252 55.000 0.00 0.00 0.00 3.27
2670 3120 1.115467 CCCTAGCAACTCGGTCTCAT 58.885 55.000 0.00 0.00 0.00 2.90
2671 3121 1.067821 CCCTAGCAACTCGGTCTCATC 59.932 57.143 0.00 0.00 0.00 2.92
2672 3122 1.268794 CCTAGCAACTCGGTCTCATCG 60.269 57.143 0.00 0.00 0.00 3.84
2673 3123 1.671328 CTAGCAACTCGGTCTCATCGA 59.329 52.381 0.00 0.00 35.24 3.59
2684 3134 2.685388 GGTCTCATCGAGATGACACTCA 59.315 50.000 16.89 0.00 42.42 3.41
2688 3138 4.625083 TCTCATCGAGATGACACTCAGTCT 60.625 45.833 11.37 0.00 42.42 3.24
2691 3141 9.947478 TCTCATCGAGATGACACTCAGTCTCAT 62.947 44.444 11.37 0.00 42.42 2.90
2705 3155 2.551459 AGTCTCATCAAAGTGTGCTTGC 59.449 45.455 0.00 0.00 34.71 4.01
2737 3187 7.661968 TCTCTAACCTATTGATTTCATCTCGG 58.338 38.462 0.00 0.00 0.00 4.63
2740 3190 6.927294 AACCTATTGATTTCATCTCGGAAC 57.073 37.500 0.00 0.00 0.00 3.62
2743 3193 6.763610 ACCTATTGATTTCATCTCGGAACTTC 59.236 38.462 0.00 0.00 0.00 3.01
2744 3194 6.203723 CCTATTGATTTCATCTCGGAACTTCC 59.796 42.308 0.00 0.00 0.00 3.46
2757 3207 3.897325 GGAACTTCCGAATGGTTTTGAC 58.103 45.455 0.00 0.00 36.30 3.18
2759 3209 1.877443 ACTTCCGAATGGTTTTGACCG 59.123 47.619 0.00 0.00 36.30 4.79
2760 3210 1.199097 CTTCCGAATGGTTTTGACCGG 59.801 52.381 0.00 0.00 38.41 5.28
2762 3212 0.239879 CCGAATGGTTTTGACCGGTG 59.760 55.000 14.63 0.00 33.02 4.94
2763 3213 0.948678 CGAATGGTTTTGACCGGTGT 59.051 50.000 14.63 0.00 0.00 4.16
2764 3214 1.069500 CGAATGGTTTTGACCGGTGTC 60.069 52.381 14.63 0.00 42.12 3.67
2772 3222 2.511818 TGACCGGTGTCACTGAAGT 58.488 52.632 14.63 3.41 46.40 3.01
2795 3245 4.515191 TGTGAAAAGTGCTTAGGTCATCAC 59.485 41.667 0.00 0.00 36.19 3.06
2806 3256 0.680061 GGTCATCACCTATCGGTCCC 59.320 60.000 0.00 0.00 43.24 4.46
2807 3257 1.705873 GTCATCACCTATCGGTCCCT 58.294 55.000 0.00 0.00 43.24 4.20
2808 3258 1.614413 GTCATCACCTATCGGTCCCTC 59.386 57.143 0.00 0.00 43.24 4.30
2809 3259 1.499438 TCATCACCTATCGGTCCCTCT 59.501 52.381 0.00 0.00 43.24 3.69
2810 3260 1.615883 CATCACCTATCGGTCCCTCTG 59.384 57.143 0.00 0.00 43.24 3.35
2811 3261 0.106167 TCACCTATCGGTCCCTCTGG 60.106 60.000 0.00 0.00 43.24 3.86
2812 3262 0.106167 CACCTATCGGTCCCTCTGGA 60.106 60.000 0.00 0.00 43.24 3.86
2813 3263 0.861155 ACCTATCGGTCCCTCTGGAT 59.139 55.000 0.00 0.00 44.28 3.41
2814 3264 1.261480 CCTATCGGTCCCTCTGGATG 58.739 60.000 0.00 0.00 44.28 3.51
2815 3265 1.481428 CCTATCGGTCCCTCTGGATGT 60.481 57.143 0.00 0.00 44.28 3.06
2816 3266 2.320781 CTATCGGTCCCTCTGGATGTT 58.679 52.381 0.00 0.00 44.28 2.71
2817 3267 1.584724 ATCGGTCCCTCTGGATGTTT 58.415 50.000 0.00 0.00 44.28 2.83
2818 3268 0.902531 TCGGTCCCTCTGGATGTTTC 59.097 55.000 0.00 0.00 44.28 2.78
2819 3269 0.613260 CGGTCCCTCTGGATGTTTCA 59.387 55.000 0.00 0.00 44.28 2.69
2820 3270 1.676014 CGGTCCCTCTGGATGTTTCAC 60.676 57.143 0.00 0.00 44.28 3.18
2821 3271 1.340114 GGTCCCTCTGGATGTTTCACC 60.340 57.143 0.00 0.00 44.28 4.02
2822 3272 1.630878 GTCCCTCTGGATGTTTCACCT 59.369 52.381 0.00 0.00 44.28 4.00
2823 3273 1.630369 TCCCTCTGGATGTTTCACCTG 59.370 52.381 0.00 0.00 35.03 4.00
2824 3274 1.630369 CCCTCTGGATGTTTCACCTGA 59.370 52.381 0.00 0.00 34.11 3.86
2825 3275 2.240667 CCCTCTGGATGTTTCACCTGAT 59.759 50.000 0.00 0.00 34.59 2.90
2826 3276 3.455910 CCCTCTGGATGTTTCACCTGATA 59.544 47.826 0.00 0.00 34.59 2.15
2827 3277 4.103785 CCCTCTGGATGTTTCACCTGATAT 59.896 45.833 0.00 0.00 34.59 1.63
2828 3278 5.061853 CCTCTGGATGTTTCACCTGATATG 58.938 45.833 0.00 0.00 34.59 1.78
2829 3279 5.163269 CCTCTGGATGTTTCACCTGATATGA 60.163 44.000 0.00 0.00 34.59 2.15
2830 3280 6.465464 CCTCTGGATGTTTCACCTGATATGAT 60.465 42.308 0.00 0.00 34.59 2.45
2831 3281 6.528321 TCTGGATGTTTCACCTGATATGATC 58.472 40.000 0.00 0.00 31.16 2.92
2832 3282 5.299949 TGGATGTTTCACCTGATATGATCG 58.700 41.667 0.00 0.00 0.00 3.69
2833 3283 5.070313 TGGATGTTTCACCTGATATGATCGA 59.930 40.000 0.00 0.00 0.00 3.59
2834 3284 5.991606 GGATGTTTCACCTGATATGATCGAA 59.008 40.000 0.00 0.00 0.00 3.71
2835 3285 6.483307 GGATGTTTCACCTGATATGATCGAAA 59.517 38.462 0.00 0.00 0.00 3.46
2836 3286 7.012327 GGATGTTTCACCTGATATGATCGAAAA 59.988 37.037 0.00 0.00 0.00 2.29
2837 3287 7.307493 TGTTTCACCTGATATGATCGAAAAG 57.693 36.000 0.00 0.00 0.00 2.27
2838 3288 6.878923 TGTTTCACCTGATATGATCGAAAAGT 59.121 34.615 0.00 0.00 0.00 2.66
2839 3289 6.908870 TTCACCTGATATGATCGAAAAGTG 57.091 37.500 0.00 0.00 0.00 3.16
2840 3290 5.977635 TCACCTGATATGATCGAAAAGTGT 58.022 37.500 0.00 0.00 0.00 3.55
2841 3291 7.107639 TCACCTGATATGATCGAAAAGTGTA 57.892 36.000 0.00 0.00 0.00 2.90
2842 3292 7.552459 TCACCTGATATGATCGAAAAGTGTAA 58.448 34.615 0.00 0.00 0.00 2.41
2843 3293 8.038351 TCACCTGATATGATCGAAAAGTGTAAA 58.962 33.333 0.00 0.00 0.00 2.01
2844 3294 8.331022 CACCTGATATGATCGAAAAGTGTAAAG 58.669 37.037 0.00 0.00 0.00 1.85
2845 3295 8.041323 ACCTGATATGATCGAAAAGTGTAAAGT 58.959 33.333 0.00 0.00 0.00 2.66
2846 3296 8.883731 CCTGATATGATCGAAAAGTGTAAAGTT 58.116 33.333 0.00 0.00 0.00 2.66
2847 3297 9.907576 CTGATATGATCGAAAAGTGTAAAGTTC 57.092 33.333 0.00 0.00 0.00 3.01
2848 3298 9.430623 TGATATGATCGAAAAGTGTAAAGTTCA 57.569 29.630 0.00 0.00 0.00 3.18
2851 3301 8.782533 ATGATCGAAAAGTGTAAAGTTCAAAC 57.217 30.769 0.00 0.00 0.00 2.93
2852 3302 7.753659 TGATCGAAAAGTGTAAAGTTCAAACA 58.246 30.769 0.00 0.00 0.00 2.83
2853 3303 8.402472 TGATCGAAAAGTGTAAAGTTCAAACAT 58.598 29.630 0.00 0.00 0.00 2.71
2854 3304 9.233232 GATCGAAAAGTGTAAAGTTCAAACATT 57.767 29.630 0.00 0.00 0.00 2.71
2855 3305 8.973835 TCGAAAAGTGTAAAGTTCAAACATTT 57.026 26.923 0.00 0.00 0.00 2.32
2856 3306 9.413048 TCGAAAAGTGTAAAGTTCAAACATTTT 57.587 25.926 0.00 0.00 35.41 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 2.311542 TGGGGCAGTAAAGATGGTCATT 59.688 45.455 0.00 0.00 0.00 2.57
264 266 5.964477 ACAAGATACAGGGTTGGATAGAGAA 59.036 40.000 0.00 0.00 0.00 2.87
308 310 4.219070 ACAAAGAACGGGGCCTTTAAATAC 59.781 41.667 0.84 0.00 31.98 1.89
354 356 6.688073 AGGAGTTTCAGAGAAATACTTGGA 57.312 37.500 0.00 0.00 0.00 3.53
368 370 5.995897 GCTAACCAGAAAACTAGGAGTTTCA 59.004 40.000 14.52 0.00 46.78 2.69
369 371 5.995897 TGCTAACCAGAAAACTAGGAGTTTC 59.004 40.000 5.13 1.38 46.78 2.78
370 372 5.998363 CTGCTAACCAGAAAACTAGGAGTTT 59.002 40.000 0.00 0.00 44.64 2.66
371 373 5.552178 CTGCTAACCAGAAAACTAGGAGTT 58.448 41.667 0.00 0.00 44.64 3.01
372 374 4.563786 GCTGCTAACCAGAAAACTAGGAGT 60.564 45.833 0.00 0.00 44.64 3.85
373 375 3.935828 GCTGCTAACCAGAAAACTAGGAG 59.064 47.826 0.00 0.00 44.64 3.69
374 376 3.307480 GGCTGCTAACCAGAAAACTAGGA 60.307 47.826 0.00 0.00 44.64 2.94
375 377 3.010420 GGCTGCTAACCAGAAAACTAGG 58.990 50.000 0.00 0.00 44.64 3.02
376 378 3.944087 AGGCTGCTAACCAGAAAACTAG 58.056 45.455 0.00 0.00 44.64 2.57
377 379 4.367039 AAGGCTGCTAACCAGAAAACTA 57.633 40.909 0.00 0.00 44.64 2.24
378 380 2.959465 AGGCTGCTAACCAGAAAACT 57.041 45.000 0.00 0.00 44.64 2.66
379 381 4.142381 CCATAAGGCTGCTAACCAGAAAAC 60.142 45.833 0.00 0.00 44.64 2.43
380 382 4.016444 CCATAAGGCTGCTAACCAGAAAA 58.984 43.478 0.00 0.00 44.64 2.29
381 383 3.620488 CCATAAGGCTGCTAACCAGAAA 58.380 45.455 0.00 0.00 44.64 2.52
382 384 3.281727 CCATAAGGCTGCTAACCAGAA 57.718 47.619 0.00 0.00 44.64 3.02
402 404 1.227943 TGTTCACTGGGCAGTCAGC 60.228 57.895 0.00 0.00 40.20 4.26
403 405 0.179048 TGTGTTCACTGGGCAGTCAG 60.179 55.000 4.59 0.00 40.20 3.51
404 406 0.473755 ATGTGTTCACTGGGCAGTCA 59.526 50.000 4.59 0.00 40.20 3.41
405 407 1.609208 AATGTGTTCACTGGGCAGTC 58.391 50.000 4.59 0.00 40.20 3.51
406 408 1.682854 CAAATGTGTTCACTGGGCAGT 59.317 47.619 4.59 0.00 43.61 4.40
407 409 1.682854 ACAAATGTGTTCACTGGGCAG 59.317 47.619 4.59 0.00 32.58 4.85
408 410 1.774110 ACAAATGTGTTCACTGGGCA 58.226 45.000 4.59 0.00 32.58 5.36
409 411 2.888834 AACAAATGTGTTCACTGGGC 57.111 45.000 0.00 0.00 45.00 5.36
434 436 9.816354 TTCTTTTGCATAAAACTTCTAAGCTTT 57.184 25.926 3.20 0.00 32.62 3.51
435 437 9.816354 TTTCTTTTGCATAAAACTTCTAAGCTT 57.184 25.926 3.48 3.48 32.62 3.74
436 438 9.816354 TTTTCTTTTGCATAAAACTTCTAAGCT 57.184 25.926 0.00 0.00 32.62 3.74
458 460 4.492611 ACCCTCGACGAGAAATACTTTTC 58.507 43.478 26.11 0.00 41.34 2.29
459 461 4.532314 ACCCTCGACGAGAAATACTTTT 57.468 40.909 26.11 0.00 0.00 2.27
460 462 4.532314 AACCCTCGACGAGAAATACTTT 57.468 40.909 26.11 5.29 0.00 2.66
461 463 4.021719 TGAAACCCTCGACGAGAAATACTT 60.022 41.667 26.11 9.80 0.00 2.24
462 464 3.508793 TGAAACCCTCGACGAGAAATACT 59.491 43.478 26.11 5.25 0.00 2.12
463 465 3.611549 GTGAAACCCTCGACGAGAAATAC 59.388 47.826 26.11 13.77 0.00 1.89
464 466 3.508793 AGTGAAACCCTCGACGAGAAATA 59.491 43.478 26.11 4.61 37.80 1.40
465 467 2.299297 AGTGAAACCCTCGACGAGAAAT 59.701 45.455 26.11 9.07 37.80 2.17
466 468 1.684983 AGTGAAACCCTCGACGAGAAA 59.315 47.619 26.11 2.10 37.80 2.52
467 469 1.325355 AGTGAAACCCTCGACGAGAA 58.675 50.000 26.11 1.75 37.80 2.87
468 470 1.000607 CAAGTGAAACCCTCGACGAGA 60.001 52.381 26.11 1.71 37.80 4.04
469 471 1.419374 CAAGTGAAACCCTCGACGAG 58.581 55.000 18.08 18.08 37.80 4.18
470 472 0.032952 CCAAGTGAAACCCTCGACGA 59.967 55.000 0.00 0.00 37.80 4.20
471 473 1.566018 GCCAAGTGAAACCCTCGACG 61.566 60.000 0.00 0.00 37.80 5.12
472 474 0.534203 TGCCAAGTGAAACCCTCGAC 60.534 55.000 0.00 0.00 37.80 4.20
473 475 0.534203 GTGCCAAGTGAAACCCTCGA 60.534 55.000 0.00 0.00 37.80 4.04
474 476 1.841663 CGTGCCAAGTGAAACCCTCG 61.842 60.000 0.00 0.00 37.80 4.63
516 518 2.164017 GGAGTTCCAGAGTCGGTAAGAC 59.836 54.545 0.00 0.00 42.17 3.01
629 682 3.885297 ACATTTCGGATCCCATTTGCTAG 59.115 43.478 6.06 0.00 0.00 3.42
632 685 3.525268 AACATTTCGGATCCCATTTGC 57.475 42.857 6.06 0.00 0.00 3.68
657 711 1.944709 GGAAAACAACACGTACAGCCT 59.055 47.619 0.00 0.00 0.00 4.58
660 714 1.262151 CGGGGAAAACAACACGTACAG 59.738 52.381 0.00 0.00 0.00 2.74
676 730 2.731374 GCTTCGAGAGATCCGGGG 59.269 66.667 0.00 0.00 41.60 5.73
705 759 2.859538 GCATTGGTGGATTTGTATTGCG 59.140 45.455 0.00 0.00 0.00 4.85
719 773 2.687935 GGACAACGGATATTGCATTGGT 59.312 45.455 0.00 0.00 32.47 3.67
720 774 2.687425 TGGACAACGGATATTGCATTGG 59.313 45.455 0.00 0.00 32.47 3.16
721 775 3.793129 GCTGGACAACGGATATTGCATTG 60.793 47.826 0.00 0.00 32.47 2.82
729 784 0.099259 CGTACGCTGGACAACGGATA 59.901 55.000 0.52 0.00 0.00 2.59
736 791 4.409218 GGACGCGTACGCTGGACA 62.409 66.667 34.69 0.00 45.53 4.02
769 824 6.867662 TTTTGTTTTTGGCTTTCAGAACAA 57.132 29.167 0.00 0.00 39.34 2.83
780 835 6.540551 TCCATCTTTAGGTTTTTGTTTTTGGC 59.459 34.615 0.00 0.00 0.00 4.52
830 885 5.104735 GGATGGAGTGGTTTCTAGAGAATGT 60.105 44.000 0.00 0.00 33.54 2.71
832 887 5.284582 AGGATGGAGTGGTTTCTAGAGAAT 58.715 41.667 0.00 0.00 33.54 2.40
872 934 1.252175 GAGCAGAGATATGGCGGAGA 58.748 55.000 0.00 0.00 0.00 3.71
873 935 0.246086 GGAGCAGAGATATGGCGGAG 59.754 60.000 0.00 0.00 0.00 4.63
896 958 3.623960 GTGCCCTGTGCGTTTTATATACA 59.376 43.478 0.00 0.00 45.60 2.29
897 959 3.002965 GGTGCCCTGTGCGTTTTATATAC 59.997 47.826 0.00 0.00 45.60 1.47
907 974 4.424566 GCAATGGTGCCCTGTGCG 62.425 66.667 4.76 0.00 45.68 5.34
959 1026 4.314522 TGCCTTGGACTTGGATTGATTA 57.685 40.909 0.00 0.00 0.00 1.75
1178 1252 2.043852 TCCTCCTCGGAGCAGGAC 60.044 66.667 13.79 0.00 37.68 3.85
1206 1280 0.108520 TCTTACCGAATGGCGTGGTC 60.109 55.000 0.00 0.00 39.70 4.02
1218 1292 1.753463 ACTCCGGGAGCTCTTACCG 60.753 63.158 23.84 19.47 46.79 4.02
1241 1315 2.855660 TCATCAAGAAATGCATGGCG 57.144 45.000 0.00 0.00 0.00 5.69
1252 1326 3.070748 TGTCGCCGAAAAATCATCAAGA 58.929 40.909 0.00 0.00 0.00 3.02
1268 1342 1.214062 CCAGACTCCAGACTGTCGC 59.786 63.158 1.52 0.00 38.16 5.19
1274 1348 1.134965 CCATTCGTCCAGACTCCAGAC 60.135 57.143 0.00 0.00 0.00 3.51
1281 1355 3.531538 TGATTAAGCCATTCGTCCAGAC 58.468 45.455 0.00 0.00 0.00 3.51
1282 1356 3.904800 TGATTAAGCCATTCGTCCAGA 57.095 42.857 0.00 0.00 0.00 3.86
1283 1357 3.879295 ACATGATTAAGCCATTCGTCCAG 59.121 43.478 0.00 0.00 0.00 3.86
1284 1358 3.884895 ACATGATTAAGCCATTCGTCCA 58.115 40.909 0.00 0.00 0.00 4.02
1285 1359 4.576463 AGAACATGATTAAGCCATTCGTCC 59.424 41.667 0.00 0.00 0.00 4.79
1286 1360 5.741388 AGAACATGATTAAGCCATTCGTC 57.259 39.130 0.00 0.00 0.00 4.20
1287 1361 5.163622 CCAAGAACATGATTAAGCCATTCGT 60.164 40.000 0.00 0.00 0.00 3.85
1407 1494 4.175489 CCGTCGTCGTCATCGGCT 62.175 66.667 0.71 0.00 39.73 5.52
1630 1729 2.357517 CGCCTCACCTTGCTTCGT 60.358 61.111 0.00 0.00 0.00 3.85
1641 1740 2.035155 TTCTCTCCGTCCGCCTCA 59.965 61.111 0.00 0.00 0.00 3.86
1837 1939 0.607217 CACTGCACCTGGATGCTCAA 60.607 55.000 17.81 2.66 46.28 3.02
1902 2004 0.756294 TCACTGGCTCGAGTCCAAAA 59.244 50.000 23.02 12.45 32.41 2.44
1961 2065 7.285629 TCATTTTGCCGGTATATAAATTGTGGA 59.714 33.333 1.90 0.00 0.00 4.02
1962 2066 7.429633 TCATTTTGCCGGTATATAAATTGTGG 58.570 34.615 1.90 0.00 0.00 4.17
1980 2084 9.971922 GGGAAAGATATCCAACTAATCATTTTG 57.028 33.333 0.00 0.00 41.55 2.44
1988 2092 5.424252 ACGACAGGGAAAGATATCCAACTAA 59.576 40.000 0.00 0.00 41.55 2.24
1996 2100 3.118371 GGACCAACGACAGGGAAAGATAT 60.118 47.826 0.00 0.00 0.00 1.63
2002 2106 2.738480 CGGACCAACGACAGGGAA 59.262 61.111 0.00 0.00 35.47 3.97
2006 2110 2.100631 GGATGCGGACCAACGACAG 61.101 63.158 0.00 0.00 35.47 3.51
2039 2143 0.320374 TTCTTGGTACGTGCAGGAGG 59.680 55.000 14.38 0.00 0.00 4.30
2058 2162 5.493133 TTTGTTGTCTTTGCGTATGTTCT 57.507 34.783 0.00 0.00 0.00 3.01
2118 2222 6.745450 CGTTAAAAATATGTTGCAACGAGGAT 59.255 34.615 23.79 14.20 39.55 3.24
2134 2238 6.861055 CCTCAGTATGCAACAACGTTAAAAAT 59.139 34.615 0.00 0.00 34.76 1.82
2155 2259 1.533625 CGCCTTTTCAATCCACCTCA 58.466 50.000 0.00 0.00 0.00 3.86
2187 2291 2.033747 CGATCGTGAAATCATCCGGTTG 60.034 50.000 7.03 6.15 0.00 3.77
2188 2292 2.201732 CGATCGTGAAATCATCCGGTT 58.798 47.619 7.03 0.00 0.00 4.44
2190 2294 0.508641 GCGATCGTGAAATCATCCGG 59.491 55.000 17.81 0.00 0.00 5.14
2204 2309 4.505217 CGTGGCGTTGCTGCGATC 62.505 66.667 4.77 0.00 35.06 3.69
2231 2336 2.101770 GCTGCAATGGAGCTTCGC 59.898 61.111 19.55 0.00 33.37 4.70
2305 2412 2.477845 GTCGATGCTGCACACTGC 59.522 61.111 3.57 0.00 45.29 4.40
2306 2413 1.734117 TCGTCGATGCTGCACACTG 60.734 57.895 3.57 0.00 0.00 3.66
2307 2414 1.734477 GTCGTCGATGCTGCACACT 60.734 57.895 3.57 0.00 0.00 3.55
2308 2415 1.284982 AAGTCGTCGATGCTGCACAC 61.285 55.000 3.57 0.98 0.00 3.82
2309 2416 1.006220 AAGTCGTCGATGCTGCACA 60.006 52.632 3.57 0.00 0.00 4.57
2312 2419 2.508891 CGGAAGTCGTCGATGCTGC 61.509 63.158 0.00 0.00 0.00 5.25
2315 2422 3.255379 GCCGGAAGTCGTCGATGC 61.255 66.667 5.05 0.00 37.11 3.91
2316 2423 2.949678 CGCCGGAAGTCGTCGATG 60.950 66.667 5.05 0.00 43.32 3.84
2317 2424 3.129502 TCGCCGGAAGTCGTCGAT 61.130 61.111 5.05 0.00 44.34 3.59
2319 2426 2.429571 TTTCGCCGGAAGTCGTCG 60.430 61.111 5.05 0.00 41.91 5.12
2321 2428 0.942884 GAAGTTTCGCCGGAAGTCGT 60.943 55.000 5.05 0.00 37.11 4.34
2322 2429 0.942410 TGAAGTTTCGCCGGAAGTCG 60.942 55.000 5.05 0.00 32.80 4.18
2323 2430 1.439679 ATGAAGTTTCGCCGGAAGTC 58.560 50.000 5.05 0.00 32.80 3.01
2324 2431 1.892209 AATGAAGTTTCGCCGGAAGT 58.108 45.000 5.05 0.00 32.80 3.01
2328 2435 0.039617 TGCAAATGAAGTTTCGCCGG 60.040 50.000 0.00 0.00 0.00 6.13
2329 2436 1.330306 CTGCAAATGAAGTTTCGCCG 58.670 50.000 0.00 0.00 0.00 6.46
2330 2437 1.063031 GCTGCAAATGAAGTTTCGCC 58.937 50.000 0.00 0.00 0.00 5.54
2331 2438 1.769733 TGCTGCAAATGAAGTTTCGC 58.230 45.000 0.00 0.00 0.00 4.70
2332 2439 3.120616 CACATGCTGCAAATGAAGTTTCG 59.879 43.478 6.36 0.00 0.00 3.46
2333 2440 3.430895 CCACATGCTGCAAATGAAGTTTC 59.569 43.478 6.36 0.00 0.00 2.78
2334 2441 3.395639 CCACATGCTGCAAATGAAGTTT 58.604 40.909 6.36 0.00 0.00 2.66
2336 2443 1.274167 CCCACATGCTGCAAATGAAGT 59.726 47.619 6.36 0.00 0.00 3.01
2338 2445 1.340088 ACCCACATGCTGCAAATGAA 58.660 45.000 6.36 0.00 0.00 2.57
2340 2447 2.492881 TCTAACCCACATGCTGCAAATG 59.507 45.455 6.36 7.99 0.00 2.32
2341 2448 2.806434 TCTAACCCACATGCTGCAAAT 58.194 42.857 6.36 0.00 0.00 2.32
2342 2449 2.284754 TCTAACCCACATGCTGCAAA 57.715 45.000 6.36 0.00 0.00 3.68
2343 2450 2.284754 TTCTAACCCACATGCTGCAA 57.715 45.000 6.36 0.00 0.00 4.08
2344 2451 2.284754 TTTCTAACCCACATGCTGCA 57.715 45.000 4.13 4.13 0.00 4.41
2345 2452 5.284079 CAATATTTCTAACCCACATGCTGC 58.716 41.667 0.00 0.00 0.00 5.25
2346 2453 5.221303 CCCAATATTTCTAACCCACATGCTG 60.221 44.000 0.00 0.00 0.00 4.41
2348 2455 4.501400 GCCCAATATTTCTAACCCACATGC 60.501 45.833 0.00 0.00 0.00 4.06
2349 2456 4.039124 GGCCCAATATTTCTAACCCACATG 59.961 45.833 0.00 0.00 0.00 3.21
2350 2457 4.223144 GGCCCAATATTTCTAACCCACAT 58.777 43.478 0.00 0.00 0.00 3.21
2352 2459 2.621526 CGGCCCAATATTTCTAACCCAC 59.378 50.000 0.00 0.00 0.00 4.61
2353 2460 2.242708 ACGGCCCAATATTTCTAACCCA 59.757 45.455 0.00 0.00 0.00 4.51
2354 2461 2.940158 ACGGCCCAATATTTCTAACCC 58.060 47.619 0.00 0.00 0.00 4.11
2355 2462 4.964593 TCTACGGCCCAATATTTCTAACC 58.035 43.478 0.00 0.00 0.00 2.85
2359 2466 7.418337 AAAATTTCTACGGCCCAATATTTCT 57.582 32.000 0.00 0.00 0.00 2.52
2375 2482 9.893305 CGTGGTGTAGAGAATTTTAAAATTTCT 57.107 29.630 23.44 24.38 38.64 2.52
2376 2483 9.124807 CCGTGGTGTAGAGAATTTTAAAATTTC 57.875 33.333 23.44 20.41 38.64 2.17
2377 2484 7.597369 GCCGTGGTGTAGAGAATTTTAAAATTT 59.403 33.333 23.44 14.83 38.64 1.82
2378 2485 7.088272 GCCGTGGTGTAGAGAATTTTAAAATT 58.912 34.615 22.95 22.95 41.06 1.82
2381 2488 4.152759 CGCCGTGGTGTAGAGAATTTTAAA 59.847 41.667 0.00 0.00 0.00 1.52
2383 2490 3.255725 CGCCGTGGTGTAGAGAATTTTA 58.744 45.455 0.00 0.00 0.00 1.52
2384 2491 2.073816 CGCCGTGGTGTAGAGAATTTT 58.926 47.619 0.00 0.00 0.00 1.82
2385 2492 1.001633 ACGCCGTGGTGTAGAGAATTT 59.998 47.619 2.65 0.00 37.05 1.82
2386 2493 0.606604 ACGCCGTGGTGTAGAGAATT 59.393 50.000 2.65 0.00 37.05 2.17
2390 2498 1.154016 CTGACGCCGTGGTGTAGAG 60.154 63.158 4.84 1.16 39.13 2.43
2407 2521 6.440647 TCACAAAGTATGGTGTAGAGAATCCT 59.559 38.462 0.00 0.00 36.43 3.24
2410 2524 6.644347 CCTCACAAAGTATGGTGTAGAGAAT 58.356 40.000 0.00 0.00 36.43 2.40
2415 2529 2.930040 CGCCTCACAAAGTATGGTGTAG 59.070 50.000 0.00 0.00 36.43 2.74
2423 2537 0.320374 CCCTCACGCCTCACAAAGTA 59.680 55.000 0.00 0.00 0.00 2.24
2436 2550 4.660938 AACCTTGGCGCCCCTCAC 62.661 66.667 26.77 0.00 0.00 3.51
2437 2551 4.344865 GAACCTTGGCGCCCCTCA 62.345 66.667 26.77 0.59 0.00 3.86
2438 2552 3.978571 GAGAACCTTGGCGCCCCTC 62.979 68.421 26.77 15.85 0.00 4.30
2439 2553 4.035102 GAGAACCTTGGCGCCCCT 62.035 66.667 26.77 11.04 0.00 4.79
2440 2554 2.666098 TAGAGAACCTTGGCGCCCC 61.666 63.158 26.77 5.95 0.00 5.80
2441 2555 1.449778 GTAGAGAACCTTGGCGCCC 60.450 63.158 26.77 7.06 0.00 6.13
2446 2560 5.422214 AAGTATGGTGTAGAGAACCTTGG 57.578 43.478 0.00 0.00 38.60 3.61
2448 2562 8.041323 CACATTAAGTATGGTGTAGAGAACCTT 58.959 37.037 0.00 0.00 38.64 3.50
2449 2563 7.364762 CCACATTAAGTATGGTGTAGAGAACCT 60.365 40.741 0.00 0.00 38.64 3.50
2462 2576 6.406370 TCTCCTTCACACCACATTAAGTATG 58.594 40.000 0.00 0.00 40.26 2.39
2463 2577 6.620877 TCTCCTTCACACCACATTAAGTAT 57.379 37.500 0.00 0.00 0.00 2.12
2464 2578 5.568825 GCTCTCCTTCACACCACATTAAGTA 60.569 44.000 0.00 0.00 0.00 2.24
2465 2579 4.804261 GCTCTCCTTCACACCACATTAAGT 60.804 45.833 0.00 0.00 0.00 2.24
2466 2580 3.686726 GCTCTCCTTCACACCACATTAAG 59.313 47.826 0.00 0.00 0.00 1.85
2468 2582 2.027192 GGCTCTCCTTCACACCACATTA 60.027 50.000 0.00 0.00 0.00 1.90
2469 2583 1.271597 GGCTCTCCTTCACACCACATT 60.272 52.381 0.00 0.00 0.00 2.71
2470 2584 0.326264 GGCTCTCCTTCACACCACAT 59.674 55.000 0.00 0.00 0.00 3.21
2473 2908 1.483595 CCAGGCTCTCCTTCACACCA 61.484 60.000 0.00 0.00 41.93 4.17
2479 2914 0.397816 TCCTAGCCAGGCTCTCCTTC 60.398 60.000 20.38 0.00 41.93 3.46
2512 2947 2.572095 TAGTCAGGGGCATTCACGCG 62.572 60.000 3.53 3.53 0.00 6.01
2526 2975 2.209690 TGTGAGGGTGTCGATAGTCA 57.790 50.000 0.00 0.00 37.40 3.41
2529 2978 3.085443 GACATGTGAGGGTGTCGATAG 57.915 52.381 1.15 0.00 35.85 2.08
2534 2983 2.427506 GGAAAGACATGTGAGGGTGTC 58.572 52.381 1.15 0.00 43.85 3.67
2547 2996 7.012959 ACTTTAGAGTTTTCAACGGAAAGAC 57.987 36.000 13.35 3.39 43.47 3.01
2553 3002 7.111593 CGAAATTGACTTTAGAGTTTTCAACGG 59.888 37.037 8.80 0.00 35.88 4.44
2554 3003 7.111593 CCGAAATTGACTTTAGAGTTTTCAACG 59.888 37.037 8.80 0.00 35.88 4.10
2556 3005 6.915843 GCCGAAATTGACTTTAGAGTTTTCAA 59.084 34.615 8.80 0.91 35.88 2.69
2557 3006 6.435428 GCCGAAATTGACTTTAGAGTTTTCA 58.565 36.000 8.80 0.00 35.88 2.69
2558 3007 5.856986 GGCCGAAATTGACTTTAGAGTTTTC 59.143 40.000 0.00 0.00 35.88 2.29
2563 3012 3.343617 TGGGCCGAAATTGACTTTAGAG 58.656 45.455 0.00 0.00 0.00 2.43
2574 3023 1.140052 TGTGTATCGATGGGCCGAAAT 59.860 47.619 8.54 0.00 42.22 2.17
2576 3025 0.756294 ATGTGTATCGATGGGCCGAA 59.244 50.000 8.54 0.00 42.22 4.30
2580 3029 3.735208 CGGATAGATGTGTATCGATGGGC 60.735 52.174 8.54 0.00 38.38 5.36
2605 3055 7.772166 AGTGTATCTGAAAGTGTATCGATGAA 58.228 34.615 8.54 0.00 33.76 2.57
2613 3063 8.191446 GCTCTATCAAGTGTATCTGAAAGTGTA 58.809 37.037 0.00 0.00 33.76 2.90
2614 3064 7.038659 GCTCTATCAAGTGTATCTGAAAGTGT 58.961 38.462 0.00 0.00 33.76 3.55
2615 3065 6.478344 GGCTCTATCAAGTGTATCTGAAAGTG 59.522 42.308 0.00 0.00 33.76 3.16
2616 3066 6.155221 TGGCTCTATCAAGTGTATCTGAAAGT 59.845 38.462 0.00 0.00 33.76 2.66
2617 3067 6.478344 GTGGCTCTATCAAGTGTATCTGAAAG 59.522 42.308 0.00 0.00 0.00 2.62
2618 3068 6.155221 AGTGGCTCTATCAAGTGTATCTGAAA 59.845 38.462 0.00 0.00 0.00 2.69
2619 3069 5.658634 AGTGGCTCTATCAAGTGTATCTGAA 59.341 40.000 0.00 0.00 0.00 3.02
2620 3070 5.068329 CAGTGGCTCTATCAAGTGTATCTGA 59.932 44.000 0.00 0.00 0.00 3.27
2621 3071 5.163468 ACAGTGGCTCTATCAAGTGTATCTG 60.163 44.000 0.00 0.00 0.00 2.90
2622 3072 4.959210 ACAGTGGCTCTATCAAGTGTATCT 59.041 41.667 0.00 0.00 0.00 1.98
2634 3084 2.054799 AGGGTTTTGACAGTGGCTCTA 58.945 47.619 0.00 0.00 0.00 2.43
2636 3086 2.427506 CTAGGGTTTTGACAGTGGCTC 58.572 52.381 0.00 0.00 0.00 4.70
2645 3095 1.418637 ACCGAGTTGCTAGGGTTTTGA 59.581 47.619 0.00 0.00 30.40 2.69
2647 3097 1.697982 AGACCGAGTTGCTAGGGTTTT 59.302 47.619 0.00 0.00 30.40 2.43
2650 3100 0.251653 TGAGACCGAGTTGCTAGGGT 60.252 55.000 0.00 0.00 30.40 4.34
2653 3103 1.671328 TCGATGAGACCGAGTTGCTAG 59.329 52.381 0.00 0.00 0.00 3.42
2655 3105 0.453793 CTCGATGAGACCGAGTTGCT 59.546 55.000 0.00 0.00 45.89 3.91
2667 3117 6.149575 ATGAGACTGAGTGTCATCTCGATGA 61.150 44.000 18.29 5.53 41.63 2.92
2668 3118 4.036616 ATGAGACTGAGTGTCATCTCGATG 59.963 45.833 18.29 0.45 41.63 3.84
2669 3119 4.206375 ATGAGACTGAGTGTCATCTCGAT 58.794 43.478 18.29 0.00 41.63 3.59
2670 3120 3.615155 ATGAGACTGAGTGTCATCTCGA 58.385 45.455 18.29 0.00 41.63 4.04
2675 3125 5.221601 ACACTTTGATGAGACTGAGTGTCAT 60.222 40.000 23.13 23.13 46.68 3.06
2677 3127 4.447054 CACACTTTGATGAGACTGAGTGTC 59.553 45.833 2.35 2.35 44.02 3.67
2678 3128 4.375272 CACACTTTGATGAGACTGAGTGT 58.625 43.478 0.00 1.44 46.01 3.55
2684 3134 2.551459 GCAAGCACACTTTGATGAGACT 59.449 45.455 0.00 0.00 32.29 3.24
2688 3138 1.689984 TGGCAAGCACACTTTGATGA 58.310 45.000 0.00 0.00 32.29 2.92
2691 3141 0.459489 GGTTGGCAAGCACACTTTGA 59.541 50.000 23.44 0.00 32.29 2.69
2697 3147 0.183492 AGAGAAGGTTGGCAAGCACA 59.817 50.000 28.85 0.00 0.00 4.57
2705 3155 7.829211 TGAAATCAATAGGTTAGAGAAGGTTGG 59.171 37.037 0.00 0.00 0.00 3.77
2737 3187 3.608474 CGGTCAAAACCATTCGGAAGTTC 60.608 47.826 0.00 0.00 46.86 3.01
2740 3190 1.199097 CCGGTCAAAACCATTCGGAAG 59.801 52.381 0.00 0.00 46.86 3.46
2743 3193 0.239879 CACCGGTCAAAACCATTCGG 59.760 55.000 2.59 0.00 46.86 4.30
2744 3194 0.948678 ACACCGGTCAAAACCATTCG 59.051 50.000 2.59 0.00 46.86 3.34
2765 3215 4.576463 CCTAAGCACTTTTCACACTTCAGT 59.424 41.667 0.00 0.00 0.00 3.41
2767 3217 4.523083 ACCTAAGCACTTTTCACACTTCA 58.477 39.130 0.00 0.00 0.00 3.02
2768 3218 4.574828 TGACCTAAGCACTTTTCACACTTC 59.425 41.667 0.00 0.00 0.00 3.01
2772 3222 4.515191 GTGATGACCTAAGCACTTTTCACA 59.485 41.667 0.00 0.00 33.08 3.58
2806 3256 5.922053 TCATATCAGGTGAAACATCCAGAG 58.078 41.667 0.00 0.00 39.98 3.35
2807 3257 5.955961 TCATATCAGGTGAAACATCCAGA 57.044 39.130 0.00 0.00 39.98 3.86
2808 3258 5.407691 CGATCATATCAGGTGAAACATCCAG 59.592 44.000 0.00 0.00 39.98 3.86
2809 3259 5.070313 TCGATCATATCAGGTGAAACATCCA 59.930 40.000 0.00 0.00 39.98 3.41
2810 3260 5.541845 TCGATCATATCAGGTGAAACATCC 58.458 41.667 0.00 0.00 39.98 3.51
2811 3261 7.482654 TTTCGATCATATCAGGTGAAACATC 57.517 36.000 0.00 0.00 39.98 3.06
2812 3262 7.554118 ACTTTTCGATCATATCAGGTGAAACAT 59.446 33.333 0.00 0.00 39.98 2.71
2813 3263 6.878923 ACTTTTCGATCATATCAGGTGAAACA 59.121 34.615 0.00 0.00 39.98 2.83
2814 3264 7.148407 ACACTTTTCGATCATATCAGGTGAAAC 60.148 37.037 0.00 0.00 0.00 2.78
2815 3265 6.878923 ACACTTTTCGATCATATCAGGTGAAA 59.121 34.615 0.00 0.00 0.00 2.69
2816 3266 6.406370 ACACTTTTCGATCATATCAGGTGAA 58.594 36.000 0.00 0.00 0.00 3.18
2817 3267 5.977635 ACACTTTTCGATCATATCAGGTGA 58.022 37.500 0.00 0.00 0.00 4.02
2818 3268 7.770801 TTACACTTTTCGATCATATCAGGTG 57.229 36.000 0.00 0.00 0.00 4.00
2819 3269 8.041323 ACTTTACACTTTTCGATCATATCAGGT 58.959 33.333 0.00 0.00 0.00 4.00
2820 3270 8.425577 ACTTTACACTTTTCGATCATATCAGG 57.574 34.615 0.00 0.00 0.00 3.86
2821 3271 9.907576 GAACTTTACACTTTTCGATCATATCAG 57.092 33.333 0.00 0.00 0.00 2.90
2822 3272 9.430623 TGAACTTTACACTTTTCGATCATATCA 57.569 29.630 0.00 0.00 0.00 2.15
2825 3275 9.872757 GTTTGAACTTTACACTTTTCGATCATA 57.127 29.630 0.00 0.00 0.00 2.15
2826 3276 8.402472 TGTTTGAACTTTACACTTTTCGATCAT 58.598 29.630 0.00 0.00 0.00 2.45
2827 3277 7.753659 TGTTTGAACTTTACACTTTTCGATCA 58.246 30.769 0.00 0.00 0.00 2.92
2828 3278 8.782533 ATGTTTGAACTTTACACTTTTCGATC 57.217 30.769 0.00 0.00 0.00 3.69
2829 3279 9.581099 AAATGTTTGAACTTTACACTTTTCGAT 57.419 25.926 0.00 0.00 0.00 3.59
2830 3280 8.973835 AAATGTTTGAACTTTACACTTTTCGA 57.026 26.923 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.