Multiple sequence alignment - TraesCS5D01G265800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G265800 chr5D 100.000 4245 0 0 1 4245 370117701 370121945 0.000000e+00 7840.0
1 TraesCS5D01G265800 chr5D 85.683 461 34 15 3426 3855 9591686 9592145 1.390000e-124 457.0
2 TraesCS5D01G265800 chr5D 90.625 96 8 1 1810 1905 442958221 442958315 4.460000e-25 126.0
3 TraesCS5D01G265800 chr5B 91.913 1558 91 16 215 1747 439276605 439278152 0.000000e+00 2146.0
4 TraesCS5D01G265800 chr5B 90.862 1346 80 25 1938 3265 439279713 439281033 0.000000e+00 1764.0
5 TraesCS5D01G265800 chr5B 85.093 161 20 2 1 157 621298691 621298851 1.220000e-35 161.0
6 TraesCS5D01G265800 chr5A 94.223 952 36 10 2374 3317 472493656 472494596 0.000000e+00 1435.0
7 TraesCS5D01G265800 chr5A 91.513 271 15 7 2082 2345 472493434 472493703 2.410000e-97 366.0
8 TraesCS5D01G265800 chr5A 93.478 92 5 1 1938 2029 472492622 472492712 7.400000e-28 135.0
9 TraesCS5D01G265800 chr5A 90.526 95 9 0 1810 1904 602651525 602651619 4.460000e-25 126.0
10 TraesCS5D01G265800 chr7D 94.857 700 34 2 520 1217 90588351 90587652 0.000000e+00 1092.0
11 TraesCS5D01G265800 chr7D 89.663 445 34 4 3515 3948 500927825 500927382 1.330000e-154 556.0
12 TraesCS5D01G265800 chr7D 84.941 425 31 16 3317 3710 181106230 181106652 2.380000e-107 399.0
13 TraesCS5D01G265800 chr7D 75.781 512 93 19 2598 3098 234345627 234346118 3.300000e-56 230.0
14 TraesCS5D01G265800 chr7D 91.398 93 8 0 1810 1902 271458240 271458332 1.240000e-25 128.0
15 TraesCS5D01G265800 chr7D 94.340 53 3 0 475 527 90588784 90588732 9.780000e-12 82.4
16 TraesCS5D01G265800 chr2A 91.263 744 53 9 475 1217 409138405 409137673 0.000000e+00 1003.0
17 TraesCS5D01G265800 chr2A 84.177 158 18 4 3317 3472 569584195 569584043 3.420000e-31 147.0
18 TraesCS5D01G265800 chr2A 83.125 160 21 6 3318 3472 195976275 195976433 1.590000e-29 141.0
19 TraesCS5D01G265800 chr3A 90.444 743 53 6 475 1217 6710767 6710043 0.000000e+00 963.0
20 TraesCS5D01G265800 chr3A 86.115 677 48 17 3318 3948 737423630 737424306 0.000000e+00 688.0
21 TraesCS5D01G265800 chr6B 80.400 1301 204 34 377 1642 548630013 548628729 0.000000e+00 942.0
22 TraesCS5D01G265800 chr6B 85.734 722 77 20 2452 3159 548627967 548627258 0.000000e+00 739.0
23 TraesCS5D01G265800 chr6B 85.285 666 49 19 3318 3948 2654854 2655505 3.580000e-180 641.0
24 TraesCS5D01G265800 chr6B 88.690 168 8 3 3951 4110 551771529 551771365 1.200000e-45 195.0
25 TraesCS5D01G265800 chr6B 84.177 158 14 8 3318 3472 715854466 715854615 4.420000e-30 143.0
26 TraesCS5D01G265800 chr6B 82.099 162 19 7 3318 3472 717062633 717062475 3.440000e-26 130.0
27 TraesCS5D01G265800 chr1B 90.040 743 48 5 475 1217 313398927 313398211 0.000000e+00 939.0
28 TraesCS5D01G265800 chr1B 89.771 743 49 6 475 1217 313380246 313379531 0.000000e+00 926.0
29 TraesCS5D01G265800 chr1B 84.848 165 18 3 1 159 622577661 622577498 4.390000e-35 159.0
30 TraesCS5D01G265800 chr1B 83.544 158 17 8 3317 3472 327417590 327417740 5.720000e-29 139.0
31 TraesCS5D01G265800 chr1B 82.530 166 19 2 1 156 487678481 487678316 2.060000e-28 137.0
32 TraesCS5D01G265800 chr1B 87.342 79 10 0 116 194 613516844 613516922 1.630000e-14 91.6
33 TraesCS5D01G265800 chr1B 93.023 43 3 0 152 194 640096781 640096739 3.540000e-06 63.9
34 TraesCS5D01G265800 chr6D 80.323 1301 205 31 377 1642 363874029 363872745 0.000000e+00 937.0
35 TraesCS5D01G265800 chr6D 88.084 663 45 13 3318 3948 367747990 367748650 0.000000e+00 756.0
36 TraesCS5D01G265800 chr6D 85.714 721 76 20 2455 3159 363870332 363869623 0.000000e+00 736.0
37 TraesCS5D01G265800 chr6D 87.879 165 15 2 1 160 467194525 467194689 5.600000e-44 189.0
38 TraesCS5D01G265800 chr6D 93.478 92 6 0 1810 1901 349035511 349035420 2.060000e-28 137.0
39 TraesCS5D01G265800 chr4A 91.471 680 53 3 538 1214 16885964 16886641 0.000000e+00 929.0
40 TraesCS5D01G265800 chr4A 91.069 683 56 3 538 1217 374640851 374640171 0.000000e+00 918.0
41 TraesCS5D01G265800 chr4A 88.467 659 40 15 3320 3945 734886411 734887066 0.000000e+00 763.0
42 TraesCS5D01G265800 chr6A 79.814 1293 210 32 377 1637 504894027 504892754 0.000000e+00 894.0
43 TraesCS5D01G265800 chr6A 85.794 718 81 14 2455 3159 504891978 504891269 0.000000e+00 741.0
44 TraesCS5D01G265800 chr6A 82.911 158 21 5 1 156 592819599 592819752 2.060000e-28 137.0
45 TraesCS5D01G265800 chr2D 88.410 673 41 18 3311 3948 511054988 511055658 0.000000e+00 776.0
46 TraesCS5D01G265800 chr2D 92.638 163 11 1 3515 3676 77462903 77462741 2.550000e-57 233.0
47 TraesCS5D01G265800 chr2D 85.455 165 21 2 1 164 567787692 567787530 7.300000e-38 169.0
48 TraesCS5D01G265800 chr3D 87.688 666 42 16 3321 3948 51470362 51469699 0.000000e+00 739.0
49 TraesCS5D01G265800 chr3D 75.882 510 96 16 2598 3098 456655001 456655492 7.100000e-58 235.0
50 TraesCS5D01G265800 chr3D 92.638 163 11 1 3515 3676 5821226 5821064 2.550000e-57 233.0
51 TraesCS5D01G265800 chr3D 83.893 149 13 5 1 139 500408334 500408481 9.580000e-27 132.0
52 TraesCS5D01G265800 chr1A 87.500 664 47 20 3318 3948 494155416 494156076 0.000000e+00 734.0
53 TraesCS5D01G265800 chr1A 82.877 146 22 2 10 155 533151101 533151243 1.240000e-25 128.0
54 TraesCS5D01G265800 chr1A 91.304 92 8 0 1810 1901 492621450 492621359 4.460000e-25 126.0
55 TraesCS5D01G265800 chr1A 97.436 39 1 0 156 194 463033468 463033506 2.740000e-07 67.6
56 TraesCS5D01G265800 chr2B 85.714 658 63 15 3318 3948 123151934 123151281 0.000000e+00 665.0
57 TraesCS5D01G265800 chr2B 82.400 375 39 14 3317 3674 120235453 120235089 6.900000e-78 302.0
58 TraesCS5D01G265800 chr2B 84.472 161 22 2 1 159 12283704 12283545 5.680000e-34 156.0
59 TraesCS5D01G265800 chr2B 91.304 92 8 0 1810 1901 668189776 668189685 4.460000e-25 126.0
60 TraesCS5D01G265800 chrUn 87.416 596 41 16 3387 3948 358003241 358002646 0.000000e+00 654.0
61 TraesCS5D01G265800 chrUn 83.851 161 24 2 2598 2757 478826501 478826660 7.350000e-33 152.0
62 TraesCS5D01G265800 chr1D 91.031 446 27 4 3515 3948 126185163 126184719 1.310000e-164 590.0
63 TraesCS5D01G265800 chr1D 87.970 133 15 1 27 159 364729537 364729406 5.680000e-34 156.0
64 TraesCS5D01G265800 chr1D 75.664 226 31 12 1 203 143996242 143996466 1.630000e-14 91.6
65 TraesCS5D01G265800 chr1D 89.583 48 5 0 156 203 70780371 70780324 1.270000e-05 62.1
66 TraesCS5D01G265800 chr7A 76.773 719 145 13 2453 3157 232282878 232283588 2.390000e-102 383.0
67 TraesCS5D01G265800 chr7A 84.483 174 11 6 3946 4111 696748074 696748239 1.580000e-34 158.0
68 TraesCS5D01G265800 chr7A 90.722 97 9 0 1810 1906 457749416 457749320 3.440000e-26 130.0
69 TraesCS5D01G265800 chr7A 81.548 168 21 5 3 160 641953117 641953284 3.440000e-26 130.0
70 TraesCS5D01G265800 chr3B 93.478 92 6 0 1810 1901 50788347 50788438 2.060000e-28 137.0
71 TraesCS5D01G265800 chr3B 92.553 94 7 0 1810 1903 177503867 177503774 7.400000e-28 135.0
72 TraesCS5D01G265800 chr3B 97.436 39 1 0 156 194 789450840 789450878 2.740000e-07 67.6
73 TraesCS5D01G265800 chr7B 82.099 162 19 7 3318 3472 156925257 156925099 3.440000e-26 130.0
74 TraesCS5D01G265800 chr7B 80.537 149 17 6 1 139 508983162 508983308 2.090000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G265800 chr5D 370117701 370121945 4244 False 7840.000000 7840 100.000000 1 4245 1 chr5D.!!$F2 4244
1 TraesCS5D01G265800 chr5B 439276605 439281033 4428 False 1955.000000 2146 91.387500 215 3265 2 chr5B.!!$F2 3050
2 TraesCS5D01G265800 chr5A 472492622 472494596 1974 False 645.333333 1435 93.071333 1938 3317 3 chr5A.!!$F2 1379
3 TraesCS5D01G265800 chr7D 90587652 90588784 1132 True 587.200000 1092 94.598500 475 1217 2 chr7D.!!$R2 742
4 TraesCS5D01G265800 chr2A 409137673 409138405 732 True 1003.000000 1003 91.263000 475 1217 1 chr2A.!!$R1 742
5 TraesCS5D01G265800 chr3A 6710043 6710767 724 True 963.000000 963 90.444000 475 1217 1 chr3A.!!$R1 742
6 TraesCS5D01G265800 chr3A 737423630 737424306 676 False 688.000000 688 86.115000 3318 3948 1 chr3A.!!$F1 630
7 TraesCS5D01G265800 chr6B 548627258 548630013 2755 True 840.500000 942 83.067000 377 3159 2 chr6B.!!$R3 2782
8 TraesCS5D01G265800 chr6B 2654854 2655505 651 False 641.000000 641 85.285000 3318 3948 1 chr6B.!!$F1 630
9 TraesCS5D01G265800 chr1B 313398211 313398927 716 True 939.000000 939 90.040000 475 1217 1 chr1B.!!$R2 742
10 TraesCS5D01G265800 chr1B 313379531 313380246 715 True 926.000000 926 89.771000 475 1217 1 chr1B.!!$R1 742
11 TraesCS5D01G265800 chr6D 363869623 363874029 4406 True 836.500000 937 83.018500 377 3159 2 chr6D.!!$R2 2782
12 TraesCS5D01G265800 chr6D 367747990 367748650 660 False 756.000000 756 88.084000 3318 3948 1 chr6D.!!$F1 630
13 TraesCS5D01G265800 chr4A 16885964 16886641 677 False 929.000000 929 91.471000 538 1214 1 chr4A.!!$F1 676
14 TraesCS5D01G265800 chr4A 374640171 374640851 680 True 918.000000 918 91.069000 538 1217 1 chr4A.!!$R1 679
15 TraesCS5D01G265800 chr4A 734886411 734887066 655 False 763.000000 763 88.467000 3320 3945 1 chr4A.!!$F2 625
16 TraesCS5D01G265800 chr6A 504891269 504894027 2758 True 817.500000 894 82.804000 377 3159 2 chr6A.!!$R1 2782
17 TraesCS5D01G265800 chr2D 511054988 511055658 670 False 776.000000 776 88.410000 3311 3948 1 chr2D.!!$F1 637
18 TraesCS5D01G265800 chr3D 51469699 51470362 663 True 739.000000 739 87.688000 3321 3948 1 chr3D.!!$R2 627
19 TraesCS5D01G265800 chr1A 494155416 494156076 660 False 734.000000 734 87.500000 3318 3948 1 chr1A.!!$F2 630
20 TraesCS5D01G265800 chr2B 123151281 123151934 653 True 665.000000 665 85.714000 3318 3948 1 chr2B.!!$R3 630
21 TraesCS5D01G265800 chrUn 358002646 358003241 595 True 654.000000 654 87.416000 3387 3948 1 chrUn.!!$R1 561
22 TraesCS5D01G265800 chr7A 232282878 232283588 710 False 383.000000 383 76.773000 2453 3157 1 chr7A.!!$F1 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.038159 CGGCTCAGACTTTCGAAGGT 60.038 55.0 13.3 13.3 0.0 3.50 F
296 297 0.171231 CCGTCAACTCTGCTCGATCA 59.829 55.0 0.0 0.0 0.0 2.92 F
2028 4007 0.532115 AAATGATTTCACGGGCTGGC 59.468 50.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2037 4016 1.471119 ACTCCTCCAATTGCATGCAG 58.529 50.000 21.50 9.50 0.00 4.41 R
2038 4017 1.546923 CAACTCCTCCAATTGCATGCA 59.453 47.619 18.46 18.46 0.00 3.96 R
3950 8416 0.243365 CCGGCTCTGCAGATAGCTAG 59.757 60.000 22.78 17.49 45.94 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.973229 GGTGCTTGCATTTATTTCTGAATT 57.027 33.333 0.00 0.00 0.00 2.17
24 25 7.368480 GGTGCTTGCATTTATTTCTGAATTT 57.632 32.000 0.00 0.00 0.00 1.82
25 26 8.477984 GGTGCTTGCATTTATTTCTGAATTTA 57.522 30.769 0.00 0.00 0.00 1.40
26 27 9.101655 GGTGCTTGCATTTATTTCTGAATTTAT 57.898 29.630 0.00 0.00 0.00 1.40
42 43 7.479352 TGAATTTATTCAGGATTTCCAGCAA 57.521 32.000 1.12 0.00 41.51 3.91
43 44 8.081517 TGAATTTATTCAGGATTTCCAGCAAT 57.918 30.769 1.12 0.00 41.51 3.56
44 45 7.982919 TGAATTTATTCAGGATTTCCAGCAATG 59.017 33.333 1.12 0.00 41.51 2.82
45 46 3.814005 ATTCAGGATTTCCAGCAATGC 57.186 42.857 0.00 0.00 38.89 3.56
46 47 2.219080 TCAGGATTTCCAGCAATGCA 57.781 45.000 8.35 0.00 38.89 3.96
47 48 1.820519 TCAGGATTTCCAGCAATGCAC 59.179 47.619 8.35 0.00 38.89 4.57
48 49 1.546923 CAGGATTTCCAGCAATGCACA 59.453 47.619 8.35 0.00 38.89 4.57
49 50 2.167693 CAGGATTTCCAGCAATGCACAT 59.832 45.455 8.35 0.00 38.89 3.21
50 51 2.835764 AGGATTTCCAGCAATGCACATT 59.164 40.909 8.35 0.00 38.89 2.71
51 52 3.262405 AGGATTTCCAGCAATGCACATTT 59.738 39.130 8.35 0.00 38.89 2.32
52 53 4.467082 AGGATTTCCAGCAATGCACATTTA 59.533 37.500 8.35 0.00 38.89 1.40
53 54 4.807304 GGATTTCCAGCAATGCACATTTAG 59.193 41.667 8.35 0.00 35.64 1.85
54 55 4.870123 TTTCCAGCAATGCACATTTAGT 57.130 36.364 8.35 0.00 0.00 2.24
55 56 7.609033 GGATTTCCAGCAATGCACATTTAGTG 61.609 42.308 8.35 0.00 42.82 2.74
66 67 4.760530 CACATTTAGTGGGAGGAGATGA 57.239 45.455 0.00 0.00 44.69 2.92
67 68 5.301835 CACATTTAGTGGGAGGAGATGAT 57.698 43.478 0.00 0.00 44.69 2.45
68 69 5.303971 CACATTTAGTGGGAGGAGATGATC 58.696 45.833 0.00 0.00 44.69 2.92
69 70 5.744300 CACATTTAGTGGGAGGAGATGATCC 60.744 48.000 0.00 0.00 45.76 3.36
77 78 1.283181 GGAGATGATCCCGTCGACG 59.717 63.158 30.33 30.33 43.01 5.12
78 79 1.164662 GGAGATGATCCCGTCGACGA 61.165 60.000 37.65 20.57 43.01 4.20
79 80 0.041135 GAGATGATCCCGTCGACGAC 60.041 60.000 37.65 23.81 43.02 4.34
103 104 5.997385 GAAGTGCCTTCGTAAATTTCAAGA 58.003 37.500 0.00 0.00 30.62 3.02
104 105 6.575162 AAGTGCCTTCGTAAATTTCAAGAT 57.425 33.333 0.00 0.00 0.00 2.40
105 106 5.942872 AGTGCCTTCGTAAATTTCAAGATG 58.057 37.500 0.00 0.00 0.00 2.90
106 107 5.705441 AGTGCCTTCGTAAATTTCAAGATGA 59.295 36.000 0.00 0.00 0.00 2.92
107 108 6.375455 AGTGCCTTCGTAAATTTCAAGATGAT 59.625 34.615 0.00 0.00 0.00 2.45
108 109 7.552687 AGTGCCTTCGTAAATTTCAAGATGATA 59.447 33.333 0.00 0.00 0.00 2.15
109 110 8.345565 GTGCCTTCGTAAATTTCAAGATGATAT 58.654 33.333 0.00 0.00 0.00 1.63
110 111 8.344831 TGCCTTCGTAAATTTCAAGATGATATG 58.655 33.333 0.00 0.00 0.00 1.78
111 112 7.324616 GCCTTCGTAAATTTCAAGATGATATGC 59.675 37.037 0.00 0.00 0.00 3.14
112 113 7.805071 CCTTCGTAAATTTCAAGATGATATGCC 59.195 37.037 0.00 0.00 0.00 4.40
113 114 6.887368 TCGTAAATTTCAAGATGATATGCCG 58.113 36.000 0.00 0.00 0.00 5.69
114 115 6.073276 TCGTAAATTTCAAGATGATATGCCGG 60.073 38.462 0.00 0.00 0.00 6.13
115 116 4.510038 AATTTCAAGATGATATGCCGGC 57.490 40.909 22.73 22.73 0.00 6.13
116 117 2.936919 TTCAAGATGATATGCCGGCT 57.063 45.000 29.70 15.76 0.00 5.52
117 118 2.462456 TCAAGATGATATGCCGGCTC 57.538 50.000 29.70 17.89 0.00 4.70
118 119 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
119 120 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
120 121 1.637338 AGATGATATGCCGGCTCAGA 58.363 50.000 29.70 7.47 0.00 3.27
121 122 1.274728 AGATGATATGCCGGCTCAGAC 59.725 52.381 29.70 19.14 0.00 3.51
122 123 1.274728 GATGATATGCCGGCTCAGACT 59.725 52.381 29.70 8.26 0.00 3.24
123 124 1.123077 TGATATGCCGGCTCAGACTT 58.877 50.000 29.70 5.10 0.00 3.01
124 125 1.486310 TGATATGCCGGCTCAGACTTT 59.514 47.619 29.70 3.35 0.00 2.66
125 126 2.139118 GATATGCCGGCTCAGACTTTC 58.861 52.381 29.70 9.22 0.00 2.62
126 127 0.179111 TATGCCGGCTCAGACTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
127 128 1.888436 ATGCCGGCTCAGACTTTCGA 61.888 55.000 29.70 1.81 0.00 3.71
128 129 1.374252 GCCGGCTCAGACTTTCGAA 60.374 57.895 22.15 0.00 0.00 3.71
129 130 1.355066 GCCGGCTCAGACTTTCGAAG 61.355 60.000 22.15 0.00 0.00 3.79
130 131 0.737715 CCGGCTCAGACTTTCGAAGG 60.738 60.000 5.63 5.63 0.00 3.46
131 132 0.038159 CGGCTCAGACTTTCGAAGGT 60.038 55.000 13.30 13.30 0.00 3.50
132 133 1.433534 GGCTCAGACTTTCGAAGGTG 58.566 55.000 18.48 4.59 0.00 4.00
133 134 0.793250 GCTCAGACTTTCGAAGGTGC 59.207 55.000 18.48 10.92 0.00 5.01
134 135 1.606737 GCTCAGACTTTCGAAGGTGCT 60.607 52.381 18.48 11.38 0.00 4.40
135 136 2.333014 CTCAGACTTTCGAAGGTGCTC 58.667 52.381 18.48 3.55 0.00 4.26
136 137 1.686587 TCAGACTTTCGAAGGTGCTCA 59.313 47.619 18.48 0.00 0.00 4.26
137 138 2.300152 TCAGACTTTCGAAGGTGCTCAT 59.700 45.455 18.48 0.00 0.00 2.90
138 139 3.509967 TCAGACTTTCGAAGGTGCTCATA 59.490 43.478 18.48 1.15 0.00 2.15
139 140 4.021456 TCAGACTTTCGAAGGTGCTCATAA 60.021 41.667 18.48 0.00 0.00 1.90
140 141 4.690748 CAGACTTTCGAAGGTGCTCATAAA 59.309 41.667 18.48 0.00 0.00 1.40
141 142 5.179368 CAGACTTTCGAAGGTGCTCATAAAA 59.821 40.000 18.48 0.00 0.00 1.52
142 143 5.763204 AGACTTTCGAAGGTGCTCATAAAAA 59.237 36.000 18.48 0.00 0.00 1.94
143 144 6.431234 AGACTTTCGAAGGTGCTCATAAAAAT 59.569 34.615 18.48 0.00 0.00 1.82
144 145 7.606456 AGACTTTCGAAGGTGCTCATAAAAATA 59.394 33.333 18.48 0.00 0.00 1.40
145 146 7.752695 ACTTTCGAAGGTGCTCATAAAAATAG 58.247 34.615 12.63 0.00 0.00 1.73
146 147 6.677781 TTCGAAGGTGCTCATAAAAATAGG 57.322 37.500 0.00 0.00 0.00 2.57
147 148 5.123227 TCGAAGGTGCTCATAAAAATAGGG 58.877 41.667 0.00 0.00 0.00 3.53
148 149 4.881850 CGAAGGTGCTCATAAAAATAGGGT 59.118 41.667 0.00 0.00 0.00 4.34
149 150 5.220854 CGAAGGTGCTCATAAAAATAGGGTG 60.221 44.000 0.00 0.00 0.00 4.61
150 151 5.193099 AGGTGCTCATAAAAATAGGGTGT 57.807 39.130 0.00 0.00 0.00 4.16
151 152 4.949856 AGGTGCTCATAAAAATAGGGTGTG 59.050 41.667 0.00 0.00 0.00 3.82
152 153 4.440112 GGTGCTCATAAAAATAGGGTGTGC 60.440 45.833 0.00 0.00 0.00 4.57
153 154 3.376859 TGCTCATAAAAATAGGGTGTGCG 59.623 43.478 0.00 0.00 33.43 5.34
154 155 3.377172 GCTCATAAAAATAGGGTGTGCGT 59.623 43.478 0.00 0.00 0.00 5.24
155 156 4.730613 GCTCATAAAAATAGGGTGTGCGTG 60.731 45.833 0.00 0.00 0.00 5.34
156 157 4.328536 TCATAAAAATAGGGTGTGCGTGT 58.671 39.130 0.00 0.00 0.00 4.49
157 158 4.155099 TCATAAAAATAGGGTGTGCGTGTG 59.845 41.667 0.00 0.00 0.00 3.82
158 159 1.975660 AAAATAGGGTGTGCGTGTGT 58.024 45.000 0.00 0.00 0.00 3.72
159 160 2.843401 AAATAGGGTGTGCGTGTGTA 57.157 45.000 0.00 0.00 0.00 2.90
160 161 3.343941 AAATAGGGTGTGCGTGTGTAT 57.656 42.857 0.00 0.00 0.00 2.29
161 162 2.309528 ATAGGGTGTGCGTGTGTATG 57.690 50.000 0.00 0.00 0.00 2.39
162 163 0.390603 TAGGGTGTGCGTGTGTATGC 60.391 55.000 0.00 0.00 39.33 3.14
163 164 2.474266 GGTGTGCGTGTGTATGCG 59.526 61.111 0.00 0.00 41.84 4.73
168 169 3.773630 GCGTGTGTATGCGCGTGT 61.774 61.111 13.61 0.00 44.13 4.49
169 170 2.438148 GCGTGTGTATGCGCGTGTA 61.438 57.895 13.61 0.00 44.13 2.90
170 171 1.748647 GCGTGTGTATGCGCGTGTAT 61.749 55.000 13.61 4.63 44.13 2.29
171 172 1.468895 CGTGTGTATGCGCGTGTATA 58.531 50.000 13.61 2.40 37.56 1.47
172 173 2.048498 CGTGTGTATGCGCGTGTATAT 58.952 47.619 13.61 0.00 37.56 0.86
173 174 2.160156 CGTGTGTATGCGCGTGTATATG 60.160 50.000 13.61 1.09 37.56 1.78
174 175 3.047093 GTGTGTATGCGCGTGTATATGA 58.953 45.455 13.61 0.00 0.00 2.15
175 176 3.487942 GTGTGTATGCGCGTGTATATGAA 59.512 43.478 13.61 0.00 0.00 2.57
176 177 3.487942 TGTGTATGCGCGTGTATATGAAC 59.512 43.478 13.61 9.48 0.00 3.18
177 178 2.722116 TGTATGCGCGTGTATATGAACG 59.278 45.455 13.61 7.44 42.61 3.95
184 185 3.925688 CGTGTATATGAACGCTTGCTT 57.074 42.857 0.00 0.00 32.40 3.91
185 186 4.258935 CGTGTATATGAACGCTTGCTTT 57.741 40.909 0.00 0.00 32.40 3.51
186 187 4.647964 CGTGTATATGAACGCTTGCTTTT 58.352 39.130 0.00 0.00 32.40 2.27
187 188 4.491942 CGTGTATATGAACGCTTGCTTTTG 59.508 41.667 0.00 0.00 32.40 2.44
188 189 5.390613 GTGTATATGAACGCTTGCTTTTGT 58.609 37.500 0.00 0.00 0.00 2.83
189 190 6.539324 GTGTATATGAACGCTTGCTTTTGTA 58.461 36.000 0.00 0.00 0.00 2.41
190 191 6.464834 GTGTATATGAACGCTTGCTTTTGTAC 59.535 38.462 0.00 0.00 0.00 2.90
191 192 5.880054 ATATGAACGCTTGCTTTTGTACT 57.120 34.783 0.00 0.00 0.00 2.73
192 193 3.332761 TGAACGCTTGCTTTTGTACTG 57.667 42.857 0.00 0.00 0.00 2.74
193 194 2.680841 TGAACGCTTGCTTTTGTACTGT 59.319 40.909 0.00 0.00 0.00 3.55
194 195 3.872182 TGAACGCTTGCTTTTGTACTGTA 59.128 39.130 0.00 0.00 0.00 2.74
195 196 4.333095 TGAACGCTTGCTTTTGTACTGTAA 59.667 37.500 0.00 0.00 0.00 2.41
196 197 4.886247 ACGCTTGCTTTTGTACTGTAAA 57.114 36.364 0.00 0.00 0.00 2.01
197 198 4.844267 ACGCTTGCTTTTGTACTGTAAAG 58.156 39.130 9.77 9.77 35.09 1.85
198 199 4.573201 ACGCTTGCTTTTGTACTGTAAAGA 59.427 37.500 15.30 0.00 34.11 2.52
199 200 5.065474 ACGCTTGCTTTTGTACTGTAAAGAA 59.935 36.000 15.30 6.23 34.11 2.52
200 201 5.968848 CGCTTGCTTTTGTACTGTAAAGAAA 59.031 36.000 15.30 11.64 34.11 2.52
201 202 6.470877 CGCTTGCTTTTGTACTGTAAAGAAAA 59.529 34.615 15.30 4.03 34.11 2.29
202 203 7.008810 CGCTTGCTTTTGTACTGTAAAGAAAAA 59.991 33.333 15.30 3.46 34.11 1.94
203 204 8.321005 GCTTGCTTTTGTACTGTAAAGAAAAAG 58.679 33.333 15.30 15.09 37.56 2.27
204 205 9.353999 CTTGCTTTTGTACTGTAAAGAAAAAGT 57.646 29.630 15.30 0.00 37.10 2.66
205 206 8.682128 TGCTTTTGTACTGTAAAGAAAAAGTG 57.318 30.769 15.30 5.55 37.10 3.16
206 207 7.757624 TGCTTTTGTACTGTAAAGAAAAAGTGG 59.242 33.333 15.30 5.33 37.10 4.00
207 208 7.222031 GCTTTTGTACTGTAAAGAAAAAGTGGG 59.778 37.037 15.30 5.11 37.10 4.61
208 209 7.941431 TTTGTACTGTAAAGAAAAAGTGGGA 57.059 32.000 0.00 0.00 0.00 4.37
209 210 7.941431 TTGTACTGTAAAGAAAAAGTGGGAA 57.059 32.000 0.00 0.00 0.00 3.97
210 211 7.562454 TGTACTGTAAAGAAAAAGTGGGAAG 57.438 36.000 0.00 0.00 0.00 3.46
211 212 7.340256 TGTACTGTAAAGAAAAAGTGGGAAGA 58.660 34.615 0.00 0.00 0.00 2.87
212 213 6.944234 ACTGTAAAGAAAAAGTGGGAAGAG 57.056 37.500 0.00 0.00 0.00 2.85
213 214 5.828328 ACTGTAAAGAAAAAGTGGGAAGAGG 59.172 40.000 0.00 0.00 0.00 3.69
245 246 1.665679 GGATTGGTACATCAGTGCACG 59.334 52.381 12.01 6.78 39.30 5.34
246 247 2.346803 GATTGGTACATCAGTGCACGT 58.653 47.619 12.01 5.74 39.30 4.49
247 248 3.517602 GATTGGTACATCAGTGCACGTA 58.482 45.455 12.01 4.66 39.30 3.57
282 283 1.763546 TTGCCATCTGACCACCGTCA 61.764 55.000 0.00 0.00 46.91 4.35
296 297 0.171231 CCGTCAACTCTGCTCGATCA 59.829 55.000 0.00 0.00 0.00 2.92
325 341 2.356667 CCTTCCTGCCACCTTCCC 59.643 66.667 0.00 0.00 0.00 3.97
335 351 2.121963 ACCTTCCCTGCTCCACCA 60.122 61.111 0.00 0.00 0.00 4.17
339 355 4.954118 TCCCTGCTCCACCACCGT 62.954 66.667 0.00 0.00 0.00 4.83
362 378 1.302752 GTCCTGCTGTGGTGCATCA 60.303 57.895 0.00 0.00 42.48 3.07
371 387 3.127533 GGTGCATCACCGTCTGCC 61.128 66.667 0.00 0.00 44.95 4.85
423 439 3.414700 CTTCACCAGCACCGTCGC 61.415 66.667 0.00 0.00 0.00 5.19
487 503 4.478371 CTCATGCAGCTCCCCGCA 62.478 66.667 0.00 0.00 43.45 5.69
610 1014 2.705821 CGGCAGCGTCTTCCTCTCT 61.706 63.158 0.00 0.00 0.00 3.10
981 1402 4.796495 GCCCCCATCGACACCACC 62.796 72.222 0.00 0.00 0.00 4.61
1249 1673 3.140814 GCAGGTCCATTTCCGGCC 61.141 66.667 0.00 0.00 39.54 6.13
1353 1780 2.282180 AAGATGGTTGCCGGCGTT 60.282 55.556 23.90 3.76 0.00 4.84
1422 1864 0.707024 TCAGGGAGCTCAAGAGAGGA 59.293 55.000 17.19 0.00 42.33 3.71
1564 2006 1.774217 AACACCAAGGGGCAGGAGA 60.774 57.895 0.00 0.00 37.90 3.71
1642 2088 4.127171 GCTCATCGGTAAGGAATTGCTTA 58.873 43.478 14.72 14.72 0.00 3.09
1643 2089 4.574828 GCTCATCGGTAAGGAATTGCTTAA 59.425 41.667 19.55 6.53 0.00 1.85
1645 2091 6.566753 GCTCATCGGTAAGGAATTGCTTAATC 60.567 42.308 19.55 13.88 0.00 1.75
1646 2092 6.353323 TCATCGGTAAGGAATTGCTTAATCA 58.647 36.000 19.55 7.84 0.00 2.57
1648 2094 8.154203 TCATCGGTAAGGAATTGCTTAATCATA 58.846 33.333 19.55 6.11 0.00 2.15
1660 2106 9.543231 AATTGCTTAATCATATCCCAGATCATT 57.457 29.630 0.00 0.00 0.00 2.57
1668 2114 7.809880 TCATATCCCAGATCATTTCTCATCT 57.190 36.000 0.00 0.00 29.93 2.90
1669 2115 8.215954 TCATATCCCAGATCATTTCTCATCTT 57.784 34.615 0.00 0.00 29.93 2.40
1670 2116 8.666821 TCATATCCCAGATCATTTCTCATCTTT 58.333 33.333 0.00 0.00 29.93 2.52
1671 2117 8.731605 CATATCCCAGATCATTTCTCATCTTTG 58.268 37.037 0.00 0.00 29.93 2.77
1672 2118 6.070951 TCCCAGATCATTTCTCATCTTTGT 57.929 37.500 0.00 0.00 29.93 2.83
1676 2122 7.758528 CCCAGATCATTTCTCATCTTTGTTTTC 59.241 37.037 0.00 0.00 29.93 2.29
1713 2212 7.151308 ACTGCTCATTATATGCTCAGTTAGTC 58.849 38.462 0.00 0.00 38.47 2.59
1727 3673 5.325239 TCAGTTAGTCTGTCCAGATCAGAA 58.675 41.667 0.00 0.00 42.42 3.02
1737 3683 6.596888 TCTGTCCAGATCAGAATGTTCATTTC 59.403 38.462 0.00 0.00 38.71 2.17
1756 3702 8.918202 TCATTTCTTAGTTAGTTTGGTCATGT 57.082 30.769 0.00 0.00 0.00 3.21
1758 3704 8.567948 CATTTCTTAGTTAGTTTGGTCATGTGT 58.432 33.333 0.00 0.00 0.00 3.72
1775 3723 7.547722 GGTCATGTGTTAAAAAGGTTTGACTTT 59.452 33.333 0.00 0.00 42.17 2.66
1809 3757 4.461992 ACACTACGTGTTTTGCATGTAC 57.538 40.909 0.00 0.00 45.08 2.90
1815 3763 2.548057 CGTGTTTTGCATGTACCTCTGT 59.452 45.455 0.00 0.00 0.00 3.41
1818 3766 4.976116 GTGTTTTGCATGTACCTCTGTTTC 59.024 41.667 0.00 0.00 0.00 2.78
1819 3767 4.642437 TGTTTTGCATGTACCTCTGTTTCA 59.358 37.500 0.00 0.00 0.00 2.69
1820 3768 5.126222 TGTTTTGCATGTACCTCTGTTTCAA 59.874 36.000 0.00 0.00 0.00 2.69
1821 3769 5.843673 TTTGCATGTACCTCTGTTTCAAA 57.156 34.783 0.00 0.00 0.00 2.69
1822 3770 5.843673 TTGCATGTACCTCTGTTTCAAAA 57.156 34.783 0.00 0.00 0.00 2.44
1823 3771 6.403866 TTGCATGTACCTCTGTTTCAAAAT 57.596 33.333 0.00 0.00 0.00 1.82
1824 3772 7.517614 TTGCATGTACCTCTGTTTCAAAATA 57.482 32.000 0.00 0.00 0.00 1.40
1825 3773 7.144722 TGCATGTACCTCTGTTTCAAAATAG 57.855 36.000 0.00 0.00 0.00 1.73
1826 3774 6.939730 TGCATGTACCTCTGTTTCAAAATAGA 59.060 34.615 0.00 2.56 35.32 1.98
1827 3775 7.611467 TGCATGTACCTCTGTTTCAAAATAGAT 59.389 33.333 2.91 0.00 35.92 1.98
1828 3776 7.912250 GCATGTACCTCTGTTTCAAAATAGATG 59.088 37.037 2.91 3.50 35.92 2.90
1829 3777 9.166173 CATGTACCTCTGTTTCAAAATAGATGA 57.834 33.333 10.08 0.00 35.92 2.92
1830 3778 8.547967 TGTACCTCTGTTTCAAAATAGATGAC 57.452 34.615 10.08 6.50 35.92 3.06
1831 3779 7.606456 TGTACCTCTGTTTCAAAATAGATGACC 59.394 37.037 10.08 3.28 35.92 4.02
1832 3780 5.946377 ACCTCTGTTTCAAAATAGATGACCC 59.054 40.000 10.08 0.00 35.92 4.46
1833 3781 5.945784 CCTCTGTTTCAAAATAGATGACCCA 59.054 40.000 2.91 0.00 35.92 4.51
1834 3782 6.434028 CCTCTGTTTCAAAATAGATGACCCAA 59.566 38.462 2.91 0.00 35.92 4.12
1835 3783 7.123247 CCTCTGTTTCAAAATAGATGACCCAAT 59.877 37.037 2.91 0.00 35.92 3.16
1836 3784 8.421249 TCTGTTTCAAAATAGATGACCCAATT 57.579 30.769 0.00 0.00 32.24 2.32
1837 3785 8.869109 TCTGTTTCAAAATAGATGACCCAATTT 58.131 29.630 0.00 0.00 32.24 1.82
1838 3786 9.492973 CTGTTTCAAAATAGATGACCCAATTTT 57.507 29.630 0.00 0.00 33.07 1.82
1896 3844 7.625828 AAGTCATCTATTTTAAAACCGAGGG 57.374 36.000 1.97 0.82 0.00 4.30
1897 3845 6.954232 AGTCATCTATTTTAAAACCGAGGGA 58.046 36.000 1.97 2.93 0.00 4.20
1898 3846 7.048512 AGTCATCTATTTTAAAACCGAGGGAG 58.951 38.462 1.97 0.00 0.00 4.30
1899 3847 6.822170 GTCATCTATTTTAAAACCGAGGGAGT 59.178 38.462 1.97 0.00 0.00 3.85
1900 3848 7.983484 GTCATCTATTTTAAAACCGAGGGAGTA 59.017 37.037 1.97 0.00 0.00 2.59
1901 3849 8.202137 TCATCTATTTTAAAACCGAGGGAGTAG 58.798 37.037 1.97 0.00 0.00 2.57
1902 3850 6.343703 TCTATTTTAAAACCGAGGGAGTAGC 58.656 40.000 1.97 0.00 0.00 3.58
1903 3851 4.628963 TTTTAAAACCGAGGGAGTAGCT 57.371 40.909 0.00 0.00 0.00 3.32
1904 3852 4.628963 TTTAAAACCGAGGGAGTAGCTT 57.371 40.909 0.00 0.00 0.00 3.74
1905 3853 4.628963 TTAAAACCGAGGGAGTAGCTTT 57.371 40.909 0.00 0.00 0.00 3.51
1906 3854 3.503800 AAAACCGAGGGAGTAGCTTTT 57.496 42.857 0.00 0.00 0.00 2.27
1907 3855 4.628963 AAAACCGAGGGAGTAGCTTTTA 57.371 40.909 0.00 0.00 0.00 1.52
1908 3856 4.838904 AAACCGAGGGAGTAGCTTTTAT 57.161 40.909 0.00 0.00 0.00 1.40
1909 3857 4.403585 AACCGAGGGAGTAGCTTTTATC 57.596 45.455 0.00 0.00 0.00 1.75
1912 3860 4.224370 ACCGAGGGAGTAGCTTTTATCAAA 59.776 41.667 0.00 0.00 0.00 2.69
1954 3933 4.202151 GGCATTTCTGTCAAACTTGGAACT 60.202 41.667 0.00 0.00 0.00 3.01
2028 4007 0.532115 AAATGATTTCACGGGCTGGC 59.468 50.000 0.00 0.00 0.00 4.85
2029 4008 1.656818 AATGATTTCACGGGCTGGCG 61.657 55.000 0.00 0.00 0.00 5.69
2033 4012 4.680237 TTCACGGGCTGGCGACTG 62.680 66.667 0.00 0.00 0.00 3.51
2056 4035 1.005097 TCTGCATGCAATTGGAGGAGT 59.995 47.619 22.88 0.00 35.91 3.85
2074 4053 4.218417 AGGAGTTGCACAAAATAAAGCGAT 59.782 37.500 0.00 0.00 0.00 4.58
2139 4887 6.271488 TGCAAATTTGACCTGATTCCTTAG 57.729 37.500 22.31 0.00 0.00 2.18
2182 4947 1.093496 GGTAGGTCGCCGGAAAATGG 61.093 60.000 5.05 0.00 0.00 3.16
2187 4992 1.673009 TCGCCGGAAAATGGGTCAC 60.673 57.895 5.05 0.00 0.00 3.67
2211 5021 7.281100 CACCTCTGACTTAACTAATTCCCAATC 59.719 40.741 0.00 0.00 0.00 2.67
2222 5032 3.515286 CCCAATCGGCAGCAGCAG 61.515 66.667 2.65 0.00 44.61 4.24
2292 5255 6.850752 AGTATAAAACTTTTGGGGTGATGG 57.149 37.500 0.00 0.00 33.35 3.51
2349 5345 9.598517 AAAGAAAGATAGATTAACAGCTGAGAG 57.401 33.333 23.35 0.00 0.00 3.20
2372 6747 4.240888 CACTCACCAGTCATCACACTTAG 58.759 47.826 0.00 0.00 0.00 2.18
2391 6766 2.996631 AGCTGTTCCCATGTGATCTTC 58.003 47.619 0.00 0.00 0.00 2.87
2393 6768 3.084039 GCTGTTCCCATGTGATCTTCAA 58.916 45.455 0.00 0.00 0.00 2.69
2394 6769 3.507233 GCTGTTCCCATGTGATCTTCAAA 59.493 43.478 0.00 0.00 0.00 2.69
2421 6796 9.989869 GAACAAAGGTAGATTAATTAACAGCTC 57.010 33.333 0.00 0.00 0.00 4.09
2534 6917 3.316573 CTGGACCGGCACCTCTTCC 62.317 68.421 17.27 8.69 0.00 3.46
2535 6918 4.097361 GGACCGGCACCTCTTCCC 62.097 72.222 0.00 0.00 0.00 3.97
2944 7336 4.154347 GAGGAGGCGTGGGAGCTG 62.154 72.222 0.00 0.00 37.29 4.24
3109 7510 4.148825 ATCCTGACGCACTCCGCC 62.149 66.667 0.00 0.00 41.76 6.13
3265 7666 8.543774 AGATAGTATAATGGTGGATTGATGGTC 58.456 37.037 0.00 0.00 0.00 4.02
3266 7667 6.514012 AGTATAATGGTGGATTGATGGTCA 57.486 37.500 0.00 0.00 0.00 4.02
3267 7668 6.299141 AGTATAATGGTGGATTGATGGTCAC 58.701 40.000 0.00 0.00 0.00 3.67
3268 7669 3.454719 AATGGTGGATTGATGGTCACA 57.545 42.857 0.00 0.00 32.29 3.58
3269 7670 2.967745 TGGTGGATTGATGGTCACAA 57.032 45.000 0.00 0.00 32.29 3.33
3270 7671 3.235750 TGGTGGATTGATGGTCACAAA 57.764 42.857 0.00 0.00 32.29 2.83
3271 7672 2.890311 TGGTGGATTGATGGTCACAAAC 59.110 45.455 0.00 0.00 32.29 2.93
3283 7684 5.940192 TGGTCACAAACTCACAATATCAC 57.060 39.130 0.00 0.00 0.00 3.06
3284 7685 4.450757 TGGTCACAAACTCACAATATCACG 59.549 41.667 0.00 0.00 0.00 4.35
3361 7766 2.413765 CCTAGGCGAACTCGAGGC 59.586 66.667 18.41 10.53 43.02 4.70
3362 7767 2.122167 CCTAGGCGAACTCGAGGCT 61.122 63.158 18.41 10.53 45.47 4.58
3377 7785 1.356124 AGGCTATGGGCTCCTATGTG 58.644 55.000 0.00 0.00 45.63 3.21
3378 7786 1.059913 GGCTATGGGCTCCTATGTGT 58.940 55.000 0.00 0.00 41.46 3.72
3556 8006 8.567285 AAATAAGAATCAAATTCGACTGACCT 57.433 30.769 0.00 0.00 43.92 3.85
3560 8010 6.176183 AGAATCAAATTCGACTGACCTCATT 58.824 36.000 0.00 0.00 43.92 2.57
3680 8140 1.467734 CCTTCTCAATGCAGCAGTCAC 59.532 52.381 0.00 0.00 0.00 3.67
3785 8248 3.134458 GACACAAGAACTGTTGAGAGGG 58.866 50.000 0.00 0.00 35.47 4.30
3868 8331 0.099436 GCGCTGACATCAAACCATCC 59.901 55.000 0.00 0.00 0.00 3.51
3903 8369 7.210873 ACCTAACACTTTTAACTCAGAGACAG 58.789 38.462 3.79 0.00 0.00 3.51
3966 8432 4.032703 GCTATCTAGCTATCTGCAGAGC 57.967 50.000 22.96 20.13 45.62 4.09
3967 8433 3.181487 GCTATCTAGCTATCTGCAGAGCC 60.181 52.174 22.96 12.24 45.62 4.70
3968 8434 1.242989 TCTAGCTATCTGCAGAGCCG 58.757 55.000 22.96 14.03 45.94 5.52
3969 8435 0.243365 CTAGCTATCTGCAGAGCCGG 59.757 60.000 22.96 11.94 45.94 6.13
3970 8436 1.810606 TAGCTATCTGCAGAGCCGGC 61.811 60.000 21.89 21.89 45.94 6.13
3971 8437 2.030262 CTATCTGCAGAGCCGGCC 59.970 66.667 26.15 15.34 0.00 6.13
3972 8438 3.527775 CTATCTGCAGAGCCGGCCC 62.528 68.421 26.15 12.96 0.00 5.80
3980 8446 4.209866 GAGCCGGCCCATCCCATT 62.210 66.667 26.15 0.00 0.00 3.16
3981 8447 4.209866 AGCCGGCCCATCCCATTC 62.210 66.667 26.15 0.00 0.00 2.67
3983 8449 3.501911 CCGGCCCATCCCATTCCT 61.502 66.667 0.00 0.00 0.00 3.36
3984 8450 2.603008 CGGCCCATCCCATTCCTT 59.397 61.111 0.00 0.00 0.00 3.36
3985 8451 1.076044 CGGCCCATCCCATTCCTTT 60.076 57.895 0.00 0.00 0.00 3.11
3986 8452 0.687427 CGGCCCATCCCATTCCTTTT 60.687 55.000 0.00 0.00 0.00 2.27
3987 8453 1.123077 GGCCCATCCCATTCCTTTTC 58.877 55.000 0.00 0.00 0.00 2.29
3988 8454 1.343377 GGCCCATCCCATTCCTTTTCT 60.343 52.381 0.00 0.00 0.00 2.52
3989 8455 2.034878 GCCCATCCCATTCCTTTTCTC 58.965 52.381 0.00 0.00 0.00 2.87
3990 8456 2.624029 GCCCATCCCATTCCTTTTCTCA 60.624 50.000 0.00 0.00 0.00 3.27
3991 8457 3.919834 CCCATCCCATTCCTTTTCTCAT 58.080 45.455 0.00 0.00 0.00 2.90
3992 8458 3.640029 CCCATCCCATTCCTTTTCTCATG 59.360 47.826 0.00 0.00 0.00 3.07
3993 8459 4.284178 CCATCCCATTCCTTTTCTCATGT 58.716 43.478 0.00 0.00 0.00 3.21
3994 8460 5.448654 CCATCCCATTCCTTTTCTCATGTA 58.551 41.667 0.00 0.00 0.00 2.29
3995 8461 6.073314 CCATCCCATTCCTTTTCTCATGTAT 58.927 40.000 0.00 0.00 0.00 2.29
3996 8462 7.233632 CCATCCCATTCCTTTTCTCATGTATA 58.766 38.462 0.00 0.00 0.00 1.47
3997 8463 7.725397 CCATCCCATTCCTTTTCTCATGTATAA 59.275 37.037 0.00 0.00 0.00 0.98
3998 8464 9.305555 CATCCCATTCCTTTTCTCATGTATAAT 57.694 33.333 0.00 0.00 0.00 1.28
3999 8465 9.887862 ATCCCATTCCTTTTCTCATGTATAATT 57.112 29.630 0.00 0.00 0.00 1.40
4000 8466 9.713684 TCCCATTCCTTTTCTCATGTATAATTT 57.286 29.630 0.00 0.00 0.00 1.82
4001 8467 9.754382 CCCATTCCTTTTCTCATGTATAATTTG 57.246 33.333 0.00 0.00 0.00 2.32
4036 8502 3.951563 TTTTGCTGGGCTATGTATCCT 57.048 42.857 0.00 0.00 0.00 3.24
4037 8503 5.381184 TTTTTGCTGGGCTATGTATCCTA 57.619 39.130 0.00 0.00 0.00 2.94
4038 8504 4.351874 TTTGCTGGGCTATGTATCCTAC 57.648 45.455 0.00 0.00 0.00 3.18
4039 8505 2.970987 TGCTGGGCTATGTATCCTACA 58.029 47.619 0.00 0.00 43.80 2.74
4041 8507 3.515502 TGCTGGGCTATGTATCCTACATC 59.484 47.826 3.18 0.00 45.83 3.06
4042 8508 3.515502 GCTGGGCTATGTATCCTACATCA 59.484 47.826 3.18 0.00 45.83 3.07
4043 8509 4.163078 GCTGGGCTATGTATCCTACATCAT 59.837 45.833 3.18 0.00 45.83 2.45
4044 8510 5.668471 CTGGGCTATGTATCCTACATCATG 58.332 45.833 3.18 0.00 45.83 3.07
4045 8511 4.471025 TGGGCTATGTATCCTACATCATGG 59.529 45.833 3.18 0.00 45.83 3.66
4046 8512 4.141620 GGGCTATGTATCCTACATCATGGG 60.142 50.000 3.18 0.00 45.83 4.00
4047 8513 4.446371 GCTATGTATCCTACATCATGGGC 58.554 47.826 3.18 0.32 45.83 5.36
4048 8514 4.684485 GCTATGTATCCTACATCATGGGCC 60.684 50.000 0.00 0.00 45.83 5.80
4049 8515 1.985159 TGTATCCTACATCATGGGCCC 59.015 52.381 17.59 17.59 32.89 5.80
4050 8516 2.269940 GTATCCTACATCATGGGCCCT 58.730 52.381 25.70 5.48 0.00 5.19
4051 8517 1.366319 ATCCTACATCATGGGCCCTC 58.634 55.000 25.70 0.00 0.00 4.30
4052 8518 0.268869 TCCTACATCATGGGCCCTCT 59.731 55.000 25.70 7.60 0.00 3.69
4053 8519 0.689623 CCTACATCATGGGCCCTCTC 59.310 60.000 25.70 0.00 0.00 3.20
4054 8520 0.689623 CTACATCATGGGCCCTCTCC 59.310 60.000 25.70 0.00 0.00 3.71
4055 8521 0.768221 TACATCATGGGCCCTCTCCC 60.768 60.000 25.70 0.00 46.73 4.30
4117 8583 4.195334 GCCGGCCCTGATGGTCAT 62.195 66.667 18.11 0.00 39.41 3.06
4118 8584 2.203252 CCGGCCCTGATGGTCATG 60.203 66.667 0.00 0.00 39.41 3.07
4119 8585 2.591753 CGGCCCTGATGGTCATGT 59.408 61.111 0.00 0.00 39.41 3.21
4120 8586 1.820906 CGGCCCTGATGGTCATGTG 60.821 63.158 0.00 0.00 39.41 3.21
4121 8587 1.609239 GGCCCTGATGGTCATGTGA 59.391 57.895 0.00 0.00 39.18 3.58
4122 8588 0.465097 GGCCCTGATGGTCATGTGAG 60.465 60.000 0.00 0.00 39.18 3.51
4123 8589 0.543277 GCCCTGATGGTCATGTGAGA 59.457 55.000 0.00 0.00 36.04 3.27
4124 8590 1.474677 GCCCTGATGGTCATGTGAGAG 60.475 57.143 0.00 0.00 36.04 3.20
4125 8591 2.113807 CCCTGATGGTCATGTGAGAGA 58.886 52.381 0.00 0.00 0.00 3.10
4126 8592 2.102757 CCCTGATGGTCATGTGAGAGAG 59.897 54.545 0.00 0.00 0.00 3.20
4127 8593 2.102757 CCTGATGGTCATGTGAGAGAGG 59.897 54.545 0.00 0.00 0.00 3.69
4128 8594 2.102757 CTGATGGTCATGTGAGAGAGGG 59.897 54.545 0.00 0.00 0.00 4.30
4129 8595 1.415659 GATGGTCATGTGAGAGAGGGG 59.584 57.143 0.00 0.00 0.00 4.79
4130 8596 0.413434 TGGTCATGTGAGAGAGGGGA 59.587 55.000 0.00 0.00 0.00 4.81
4131 8597 1.008815 TGGTCATGTGAGAGAGGGGAT 59.991 52.381 0.00 0.00 0.00 3.85
4132 8598 1.415659 GGTCATGTGAGAGAGGGGATG 59.584 57.143 0.00 0.00 0.00 3.51
4133 8599 1.415659 GTCATGTGAGAGAGGGGATGG 59.584 57.143 0.00 0.00 0.00 3.51
4134 8600 1.291939 TCATGTGAGAGAGGGGATGGA 59.708 52.381 0.00 0.00 0.00 3.41
4135 8601 1.693062 CATGTGAGAGAGGGGATGGAG 59.307 57.143 0.00 0.00 0.00 3.86
4136 8602 1.010795 TGTGAGAGAGGGGATGGAGA 58.989 55.000 0.00 0.00 0.00 3.71
4137 8603 1.063341 TGTGAGAGAGGGGATGGAGAG 60.063 57.143 0.00 0.00 0.00 3.20
4138 8604 1.216678 GTGAGAGAGGGGATGGAGAGA 59.783 57.143 0.00 0.00 0.00 3.10
4139 8605 1.498576 TGAGAGAGGGGATGGAGAGAG 59.501 57.143 0.00 0.00 0.00 3.20
4140 8606 1.780309 GAGAGAGGGGATGGAGAGAGA 59.220 57.143 0.00 0.00 0.00 3.10
4141 8607 1.782752 AGAGAGGGGATGGAGAGAGAG 59.217 57.143 0.00 0.00 0.00 3.20
4142 8608 0.859760 AGAGGGGATGGAGAGAGAGG 59.140 60.000 0.00 0.00 0.00 3.69
4143 8609 0.831711 GAGGGGATGGAGAGAGAGGC 60.832 65.000 0.00 0.00 0.00 4.70
4144 8610 1.235696 GGGGATGGAGAGAGAGGCT 59.764 63.158 0.00 0.00 0.00 4.58
4145 8611 0.485099 GGGGATGGAGAGAGAGGCTA 59.515 60.000 0.00 0.00 0.00 3.93
4146 8612 1.133009 GGGGATGGAGAGAGAGGCTAA 60.133 57.143 0.00 0.00 0.00 3.09
4147 8613 2.494439 GGGGATGGAGAGAGAGGCTAAT 60.494 54.545 0.00 0.00 0.00 1.73
4148 8614 3.247162 GGGATGGAGAGAGAGGCTAATT 58.753 50.000 0.00 0.00 0.00 1.40
4149 8615 3.650461 GGGATGGAGAGAGAGGCTAATTT 59.350 47.826 0.00 0.00 0.00 1.82
4150 8616 4.103943 GGGATGGAGAGAGAGGCTAATTTT 59.896 45.833 0.00 0.00 0.00 1.82
4151 8617 5.398467 GGGATGGAGAGAGAGGCTAATTTTT 60.398 44.000 0.00 0.00 0.00 1.94
4231 8697 7.820044 TTTTCAAAAATAATACACCATCGGC 57.180 32.000 0.00 0.00 0.00 5.54
4232 8698 5.508200 TCAAAAATAATACACCATCGGCC 57.492 39.130 0.00 0.00 0.00 6.13
4233 8699 4.339814 TCAAAAATAATACACCATCGGCCC 59.660 41.667 0.00 0.00 0.00 5.80
4234 8700 3.876309 AAATAATACACCATCGGCCCT 57.124 42.857 0.00 0.00 0.00 5.19
4235 8701 3.418684 AATAATACACCATCGGCCCTC 57.581 47.619 0.00 0.00 0.00 4.30
4236 8702 2.097110 TAATACACCATCGGCCCTCT 57.903 50.000 0.00 0.00 0.00 3.69
4237 8703 0.469917 AATACACCATCGGCCCTCTG 59.530 55.000 0.00 0.00 0.00 3.35
4238 8704 2.044806 ATACACCATCGGCCCTCTGC 62.045 60.000 0.00 0.00 40.16 4.26
4239 8705 3.790437 CACCATCGGCCCTCTGCT 61.790 66.667 0.00 0.00 40.92 4.24
4241 8707 4.559063 CCATCGGCCCTCTGCTGG 62.559 72.222 0.00 0.00 46.96 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.973229 AATTCAGAAATAAATGCAAGCACC 57.027 33.333 0.00 0.00 0.00 5.01
18 19 7.479352 TTGCTGGAAATCCTGAATAAATTCA 57.521 32.000 10.20 5.34 43.94 2.57
19 20 7.042254 GCATTGCTGGAAATCCTGAATAAATTC 60.042 37.037 10.20 0.00 37.15 2.17
20 21 6.764560 GCATTGCTGGAAATCCTGAATAAATT 59.235 34.615 10.20 0.00 37.15 1.82
21 22 6.126997 TGCATTGCTGGAAATCCTGAATAAAT 60.127 34.615 10.49 2.21 37.15 1.40
22 23 5.187381 TGCATTGCTGGAAATCCTGAATAAA 59.813 36.000 10.49 0.21 37.15 1.40
23 24 4.710865 TGCATTGCTGGAAATCCTGAATAA 59.289 37.500 10.49 3.00 37.15 1.40
24 25 4.098349 GTGCATTGCTGGAAATCCTGAATA 59.902 41.667 10.49 0.00 37.15 1.75
25 26 3.101437 TGCATTGCTGGAAATCCTGAAT 58.899 40.909 10.49 4.91 37.15 2.57
26 27 2.231964 GTGCATTGCTGGAAATCCTGAA 59.768 45.455 10.49 0.00 37.15 3.02
27 28 1.820519 GTGCATTGCTGGAAATCCTGA 59.179 47.619 10.49 0.00 37.15 3.86
28 29 1.546923 TGTGCATTGCTGGAAATCCTG 59.453 47.619 10.49 1.39 37.93 3.86
29 30 1.927487 TGTGCATTGCTGGAAATCCT 58.073 45.000 10.49 0.00 36.82 3.24
30 31 2.973694 ATGTGCATTGCTGGAAATCC 57.026 45.000 10.49 0.00 0.00 3.01
31 32 5.290158 CACTAAATGTGCATTGCTGGAAATC 59.710 40.000 10.49 0.00 40.06 2.17
32 33 5.172934 CACTAAATGTGCATTGCTGGAAAT 58.827 37.500 10.49 0.00 40.06 2.17
33 34 4.558178 CACTAAATGTGCATTGCTGGAAA 58.442 39.130 10.49 0.00 40.06 3.13
34 35 3.056678 CCACTAAATGTGCATTGCTGGAA 60.057 43.478 10.49 0.00 44.92 3.53
35 36 2.492881 CCACTAAATGTGCATTGCTGGA 59.507 45.455 10.49 0.00 44.92 3.86
36 37 2.417651 CCCACTAAATGTGCATTGCTGG 60.418 50.000 10.49 6.28 44.92 4.85
37 38 2.492881 TCCCACTAAATGTGCATTGCTG 59.507 45.455 10.49 0.00 44.92 4.41
38 39 2.756760 CTCCCACTAAATGTGCATTGCT 59.243 45.455 10.49 0.00 44.92 3.91
39 40 2.159198 CCTCCCACTAAATGTGCATTGC 60.159 50.000 0.46 0.46 44.92 3.56
40 41 3.355378 TCCTCCCACTAAATGTGCATTG 58.645 45.455 0.00 0.00 44.92 2.82
41 42 3.266772 TCTCCTCCCACTAAATGTGCATT 59.733 43.478 0.00 0.00 44.92 3.56
42 43 2.846206 TCTCCTCCCACTAAATGTGCAT 59.154 45.455 0.00 0.00 44.92 3.96
43 44 2.265367 TCTCCTCCCACTAAATGTGCA 58.735 47.619 0.00 0.00 44.92 4.57
44 45 3.118261 TCATCTCCTCCCACTAAATGTGC 60.118 47.826 0.00 0.00 44.92 4.57
45 46 4.760530 TCATCTCCTCCCACTAAATGTG 57.239 45.455 0.00 0.00 45.80 3.21
46 47 4.349342 GGATCATCTCCTCCCACTAAATGT 59.651 45.833 0.00 0.00 41.29 2.71
47 48 4.904241 GGATCATCTCCTCCCACTAAATG 58.096 47.826 0.00 0.00 41.29 2.32
55 56 1.528292 CGACGGGATCATCTCCTCCC 61.528 65.000 0.00 0.00 46.59 4.30
56 57 0.537600 TCGACGGGATCATCTCCTCC 60.538 60.000 0.00 0.00 44.28 4.30
57 58 0.594110 GTCGACGGGATCATCTCCTC 59.406 60.000 0.00 0.00 44.28 3.71
58 59 1.167155 CGTCGACGGGATCATCTCCT 61.167 60.000 29.70 0.00 44.28 3.69
59 60 1.164662 TCGTCGACGGGATCATCTCC 61.165 60.000 35.05 0.00 44.11 3.71
60 61 0.041135 GTCGTCGACGGGATCATCTC 60.041 60.000 35.05 12.17 40.29 2.75
61 62 2.023318 GTCGTCGACGGGATCATCT 58.977 57.895 35.05 0.00 40.29 2.90
62 63 4.610844 GTCGTCGACGGGATCATC 57.389 61.111 35.05 14.32 40.29 2.92
71 72 2.254651 AGGCACTTCGTCGTCGAC 59.745 61.111 15.51 15.51 46.03 4.20
83 84 5.938322 TCATCTTGAAATTTACGAAGGCAC 58.062 37.500 0.00 0.00 0.00 5.01
84 85 6.757897 ATCATCTTGAAATTTACGAAGGCA 57.242 33.333 0.00 0.00 0.00 4.75
85 86 7.324616 GCATATCATCTTGAAATTTACGAAGGC 59.675 37.037 0.00 0.00 0.00 4.35
86 87 7.805071 GGCATATCATCTTGAAATTTACGAAGG 59.195 37.037 0.00 0.00 0.00 3.46
87 88 7.531871 CGGCATATCATCTTGAAATTTACGAAG 59.468 37.037 0.00 0.00 0.00 3.79
88 89 7.351981 CGGCATATCATCTTGAAATTTACGAA 58.648 34.615 0.00 0.00 0.00 3.85
89 90 6.073276 CCGGCATATCATCTTGAAATTTACGA 60.073 38.462 0.00 0.00 0.00 3.43
90 91 6.079763 CCGGCATATCATCTTGAAATTTACG 58.920 40.000 0.00 0.00 0.00 3.18
91 92 5.858581 GCCGGCATATCATCTTGAAATTTAC 59.141 40.000 24.80 0.00 0.00 2.01
92 93 5.769662 AGCCGGCATATCATCTTGAAATTTA 59.230 36.000 31.54 0.00 0.00 1.40
93 94 4.586001 AGCCGGCATATCATCTTGAAATTT 59.414 37.500 31.54 0.00 0.00 1.82
94 95 4.147321 AGCCGGCATATCATCTTGAAATT 58.853 39.130 31.54 0.00 0.00 1.82
95 96 3.755378 GAGCCGGCATATCATCTTGAAAT 59.245 43.478 31.54 0.06 0.00 2.17
96 97 3.141398 GAGCCGGCATATCATCTTGAAA 58.859 45.455 31.54 0.00 0.00 2.69
97 98 2.104622 TGAGCCGGCATATCATCTTGAA 59.895 45.455 31.54 0.00 0.00 2.69
98 99 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
99 100 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
100 101 1.973515 TCTGAGCCGGCATATCATCTT 59.026 47.619 31.54 3.33 0.00 2.40
101 102 1.274728 GTCTGAGCCGGCATATCATCT 59.725 52.381 31.54 4.27 0.00 2.90
102 103 1.274728 AGTCTGAGCCGGCATATCATC 59.725 52.381 31.54 16.99 0.00 2.92
103 104 1.346062 AGTCTGAGCCGGCATATCAT 58.654 50.000 31.54 6.18 0.00 2.45
104 105 1.123077 AAGTCTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
105 106 2.139118 GAAAGTCTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
106 107 1.539065 CGAAAGTCTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
107 108 0.179111 CGAAAGTCTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
108 109 1.448540 CGAAAGTCTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
109 110 2.048222 CGAAAGTCTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
110 111 1.355066 CTTCGAAAGTCTGAGCCGGC 61.355 60.000 21.89 21.89 0.00 6.13
111 112 0.737715 CCTTCGAAAGTCTGAGCCGG 60.738 60.000 0.00 0.00 0.00 6.13
112 113 0.038159 ACCTTCGAAAGTCTGAGCCG 60.038 55.000 0.00 0.00 0.00 5.52
113 114 1.433534 CACCTTCGAAAGTCTGAGCC 58.566 55.000 0.00 0.00 0.00 4.70
114 115 0.793250 GCACCTTCGAAAGTCTGAGC 59.207 55.000 0.00 0.00 0.00 4.26
115 116 2.288457 TGAGCACCTTCGAAAGTCTGAG 60.288 50.000 0.00 0.00 0.00 3.35
116 117 1.686587 TGAGCACCTTCGAAAGTCTGA 59.313 47.619 0.00 0.00 0.00 3.27
117 118 2.154854 TGAGCACCTTCGAAAGTCTG 57.845 50.000 0.00 0.00 0.00 3.51
118 119 4.537135 TTATGAGCACCTTCGAAAGTCT 57.463 40.909 0.00 0.00 0.00 3.24
119 120 5.607119 TTTTATGAGCACCTTCGAAAGTC 57.393 39.130 0.00 0.00 0.00 3.01
120 121 6.575162 ATTTTTATGAGCACCTTCGAAAGT 57.425 33.333 0.00 0.00 0.00 2.66
121 122 7.189512 CCTATTTTTATGAGCACCTTCGAAAG 58.810 38.462 0.00 0.00 0.00 2.62
122 123 6.094881 CCCTATTTTTATGAGCACCTTCGAAA 59.905 38.462 0.00 0.00 0.00 3.46
123 124 5.588648 CCCTATTTTTATGAGCACCTTCGAA 59.411 40.000 0.00 0.00 0.00 3.71
124 125 5.123227 CCCTATTTTTATGAGCACCTTCGA 58.877 41.667 0.00 0.00 0.00 3.71
125 126 4.881850 ACCCTATTTTTATGAGCACCTTCG 59.118 41.667 0.00 0.00 0.00 3.79
126 127 5.652452 ACACCCTATTTTTATGAGCACCTTC 59.348 40.000 0.00 0.00 0.00 3.46
127 128 5.418840 CACACCCTATTTTTATGAGCACCTT 59.581 40.000 0.00 0.00 0.00 3.50
128 129 4.949856 CACACCCTATTTTTATGAGCACCT 59.050 41.667 0.00 0.00 0.00 4.00
129 130 4.440112 GCACACCCTATTTTTATGAGCACC 60.440 45.833 0.00 0.00 0.00 5.01
130 131 4.672409 GCACACCCTATTTTTATGAGCAC 58.328 43.478 0.00 0.00 0.00 4.40
131 132 3.376859 CGCACACCCTATTTTTATGAGCA 59.623 43.478 0.00 0.00 0.00 4.26
132 133 3.377172 ACGCACACCCTATTTTTATGAGC 59.623 43.478 0.00 0.00 0.00 4.26
133 134 4.394920 ACACGCACACCCTATTTTTATGAG 59.605 41.667 0.00 0.00 0.00 2.90
134 135 4.155099 CACACGCACACCCTATTTTTATGA 59.845 41.667 0.00 0.00 0.00 2.15
135 136 4.083003 ACACACGCACACCCTATTTTTATG 60.083 41.667 0.00 0.00 0.00 1.90
136 137 4.076394 ACACACGCACACCCTATTTTTAT 58.924 39.130 0.00 0.00 0.00 1.40
137 138 3.478509 ACACACGCACACCCTATTTTTA 58.521 40.909 0.00 0.00 0.00 1.52
138 139 2.303175 ACACACGCACACCCTATTTTT 58.697 42.857 0.00 0.00 0.00 1.94
139 140 1.975660 ACACACGCACACCCTATTTT 58.024 45.000 0.00 0.00 0.00 1.82
140 141 2.843401 TACACACGCACACCCTATTT 57.157 45.000 0.00 0.00 0.00 1.40
141 142 2.627945 CATACACACGCACACCCTATT 58.372 47.619 0.00 0.00 0.00 1.73
142 143 1.742411 GCATACACACGCACACCCTAT 60.742 52.381 0.00 0.00 0.00 2.57
143 144 0.390603 GCATACACACGCACACCCTA 60.391 55.000 0.00 0.00 0.00 3.53
144 145 1.671054 GCATACACACGCACACCCT 60.671 57.895 0.00 0.00 0.00 4.34
145 146 2.867472 GCATACACACGCACACCC 59.133 61.111 0.00 0.00 0.00 4.61
146 147 2.474266 CGCATACACACGCACACC 59.526 61.111 0.00 0.00 0.00 4.16
152 153 1.468895 TATACACGCGCATACACACG 58.531 50.000 5.73 0.00 0.00 4.49
153 154 3.047093 TCATATACACGCGCATACACAC 58.953 45.455 5.73 0.00 0.00 3.82
154 155 3.357166 TCATATACACGCGCATACACA 57.643 42.857 5.73 0.00 0.00 3.72
155 156 3.420035 CGTTCATATACACGCGCATACAC 60.420 47.826 5.73 0.00 0.00 2.90
156 157 2.722116 CGTTCATATACACGCGCATACA 59.278 45.455 5.73 0.00 0.00 2.29
157 158 3.333978 CGTTCATATACACGCGCATAC 57.666 47.619 5.73 0.00 0.00 2.39
164 165 3.925688 AAGCAAGCGTTCATATACACG 57.074 42.857 2.21 2.21 39.49 4.49
165 166 5.390613 ACAAAAGCAAGCGTTCATATACAC 58.609 37.500 0.00 0.00 0.00 2.90
166 167 5.621197 ACAAAAGCAAGCGTTCATATACA 57.379 34.783 0.00 0.00 0.00 2.29
167 168 6.682863 CAGTACAAAAGCAAGCGTTCATATAC 59.317 38.462 0.00 0.00 0.00 1.47
168 169 6.370442 ACAGTACAAAAGCAAGCGTTCATATA 59.630 34.615 0.00 0.00 0.00 0.86
169 170 5.181245 ACAGTACAAAAGCAAGCGTTCATAT 59.819 36.000 0.00 0.00 0.00 1.78
170 171 4.513692 ACAGTACAAAAGCAAGCGTTCATA 59.486 37.500 0.00 0.00 0.00 2.15
171 172 3.315191 ACAGTACAAAAGCAAGCGTTCAT 59.685 39.130 0.00 0.00 0.00 2.57
172 173 2.680841 ACAGTACAAAAGCAAGCGTTCA 59.319 40.909 0.00 0.00 0.00 3.18
173 174 3.334272 ACAGTACAAAAGCAAGCGTTC 57.666 42.857 0.00 0.00 0.00 3.95
174 175 4.886247 TTACAGTACAAAAGCAAGCGTT 57.114 36.364 0.00 0.00 0.00 4.84
175 176 4.573201 TCTTTACAGTACAAAAGCAAGCGT 59.427 37.500 0.00 0.00 33.61 5.07
176 177 5.090652 TCTTTACAGTACAAAAGCAAGCG 57.909 39.130 0.00 0.00 33.61 4.68
177 178 7.749539 TTTTCTTTACAGTACAAAAGCAAGC 57.250 32.000 0.00 0.00 33.61 4.01
178 179 9.353999 ACTTTTTCTTTACAGTACAAAAGCAAG 57.646 29.630 9.47 11.67 35.53 4.01
179 180 9.134734 CACTTTTTCTTTACAGTACAAAAGCAA 57.865 29.630 9.47 4.42 35.53 3.91
180 181 7.757624 CCACTTTTTCTTTACAGTACAAAAGCA 59.242 33.333 9.47 0.00 35.53 3.91
181 182 7.222031 CCCACTTTTTCTTTACAGTACAAAAGC 59.778 37.037 9.47 0.00 35.53 3.51
182 183 8.463607 TCCCACTTTTTCTTTACAGTACAAAAG 58.536 33.333 0.00 2.68 37.29 2.27
183 184 8.350852 TCCCACTTTTTCTTTACAGTACAAAA 57.649 30.769 0.00 0.00 0.00 2.44
184 185 7.941431 TCCCACTTTTTCTTTACAGTACAAA 57.059 32.000 0.00 0.00 0.00 2.83
185 186 7.830201 TCTTCCCACTTTTTCTTTACAGTACAA 59.170 33.333 0.00 0.00 0.00 2.41
186 187 7.340256 TCTTCCCACTTTTTCTTTACAGTACA 58.660 34.615 0.00 0.00 0.00 2.90
187 188 7.041303 CCTCTTCCCACTTTTTCTTTACAGTAC 60.041 40.741 0.00 0.00 0.00 2.73
188 189 6.996282 CCTCTTCCCACTTTTTCTTTACAGTA 59.004 38.462 0.00 0.00 0.00 2.74
189 190 5.828328 CCTCTTCCCACTTTTTCTTTACAGT 59.172 40.000 0.00 0.00 0.00 3.55
190 191 6.062095 TCCTCTTCCCACTTTTTCTTTACAG 58.938 40.000 0.00 0.00 0.00 2.74
191 192 6.008696 TCCTCTTCCCACTTTTTCTTTACA 57.991 37.500 0.00 0.00 0.00 2.41
192 193 6.238953 GGTTCCTCTTCCCACTTTTTCTTTAC 60.239 42.308 0.00 0.00 0.00 2.01
193 194 5.831525 GGTTCCTCTTCCCACTTTTTCTTTA 59.168 40.000 0.00 0.00 0.00 1.85
194 195 4.649674 GGTTCCTCTTCCCACTTTTTCTTT 59.350 41.667 0.00 0.00 0.00 2.52
195 196 4.215908 GGTTCCTCTTCCCACTTTTTCTT 58.784 43.478 0.00 0.00 0.00 2.52
196 197 3.436615 GGGTTCCTCTTCCCACTTTTTCT 60.437 47.826 0.00 0.00 42.95 2.52
197 198 2.891580 GGGTTCCTCTTCCCACTTTTTC 59.108 50.000 0.00 0.00 42.95 2.29
198 199 2.425829 GGGGTTCCTCTTCCCACTTTTT 60.426 50.000 2.64 0.00 45.06 1.94
199 200 1.147191 GGGGTTCCTCTTCCCACTTTT 59.853 52.381 2.64 0.00 45.06 2.27
200 201 0.778083 GGGGTTCCTCTTCCCACTTT 59.222 55.000 2.64 0.00 45.06 2.66
201 202 1.489560 CGGGGTTCCTCTTCCCACTT 61.490 60.000 2.64 0.00 45.06 3.16
202 203 1.918800 CGGGGTTCCTCTTCCCACT 60.919 63.158 2.64 0.00 45.06 4.00
203 204 2.222013 ACGGGGTTCCTCTTCCCAC 61.222 63.158 2.64 0.00 45.06 4.61
204 205 2.206036 ACGGGGTTCCTCTTCCCA 59.794 61.111 2.64 0.00 45.06 4.37
205 206 1.775934 AACACGGGGTTCCTCTTCCC 61.776 60.000 0.00 0.00 42.73 3.97
206 207 0.605589 CAACACGGGGTTCCTCTTCC 60.606 60.000 0.00 0.00 37.72 3.46
207 208 0.605589 CCAACACGGGGTTCCTCTTC 60.606 60.000 0.00 0.00 37.72 2.87
208 209 1.057851 TCCAACACGGGGTTCCTCTT 61.058 55.000 0.00 0.00 37.72 2.85
209 210 0.840722 ATCCAACACGGGGTTCCTCT 60.841 55.000 0.00 0.00 37.72 3.69
210 211 0.037734 AATCCAACACGGGGTTCCTC 59.962 55.000 0.00 0.00 37.72 3.71
211 212 0.251165 CAATCCAACACGGGGTTCCT 60.251 55.000 0.00 0.00 37.72 3.36
212 213 1.248101 CCAATCCAACACGGGGTTCC 61.248 60.000 0.00 0.00 37.72 3.62
213 214 0.538746 ACCAATCCAACACGGGGTTC 60.539 55.000 0.00 0.00 37.72 3.62
245 246 3.387397 GCAAGGGGTGATGTACGTATAC 58.613 50.000 0.00 0.00 0.00 1.47
246 247 2.366266 GGCAAGGGGTGATGTACGTATA 59.634 50.000 0.00 0.00 0.00 1.47
247 248 1.140252 GGCAAGGGGTGATGTACGTAT 59.860 52.381 0.00 0.00 0.00 3.06
255 256 0.257039 GTCAGATGGCAAGGGGTGAT 59.743 55.000 0.00 0.00 0.00 3.06
261 262 1.746615 CGGTGGTCAGATGGCAAGG 60.747 63.158 0.00 0.00 0.00 3.61
282 283 0.755686 GGGGATGATCGAGCAGAGTT 59.244 55.000 10.08 0.00 0.00 3.01
283 284 0.397675 TGGGGATGATCGAGCAGAGT 60.398 55.000 10.08 0.00 0.00 3.24
288 289 4.709840 CCATGGGGATGATCGAGC 57.290 61.111 2.85 0.00 35.59 5.03
335 351 4.363990 CAGCAGGACAGCGACGGT 62.364 66.667 0.00 0.00 40.15 4.83
339 355 3.233980 ACCACAGCAGGACAGCGA 61.234 61.111 0.00 0.00 40.15 4.93
342 358 2.111669 TGCACCACAGCAGGACAG 59.888 61.111 0.00 0.00 40.11 3.51
371 387 4.436998 GACGGCGTGGAGGGTCAG 62.437 72.222 21.19 0.00 0.00 3.51
423 439 1.966451 GTGGTGAACTCCTTGCCGG 60.966 63.158 0.00 0.00 0.00 6.13
487 503 2.032071 CCGGCGAAGGTCAGGTTT 59.968 61.111 9.30 0.00 0.00 3.27
610 1014 2.355363 CACAGGACGAACGGCGAA 60.355 61.111 16.62 0.00 44.57 4.70
960 1381 3.771160 GTGTCGATGGGGGCGAGT 61.771 66.667 0.00 0.00 38.59 4.18
1050 1471 2.032528 CTGCTCCCGTTCTTGGCA 59.967 61.111 0.00 0.00 0.00 4.92
1285 1709 4.592192 CCCGATGGCGAGCACGAT 62.592 66.667 8.01 0.00 42.66 3.73
1353 1780 2.967397 CTCAGGTCAACGGCGGTA 59.033 61.111 13.24 0.00 0.00 4.02
1422 1864 2.589798 TCTCGTCGAAGTTGTTGGTT 57.410 45.000 0.00 0.00 0.00 3.67
1564 2006 2.219325 CTCAGCTCGGCGAGGAAGTT 62.219 60.000 35.03 8.25 0.00 2.66
1642 2088 8.837737 AGATGAGAAATGATCTGGGATATGATT 58.162 33.333 0.00 0.00 38.96 2.57
1643 2089 8.395288 AGATGAGAAATGATCTGGGATATGAT 57.605 34.615 0.00 0.00 38.96 2.45
1645 2091 8.731605 CAAAGATGAGAAATGATCTGGGATATG 58.268 37.037 0.00 0.00 38.96 1.78
1646 2092 8.446394 ACAAAGATGAGAAATGATCTGGGATAT 58.554 33.333 0.00 0.00 38.96 1.63
1648 2094 6.670617 ACAAAGATGAGAAATGATCTGGGAT 58.329 36.000 0.00 0.00 38.96 3.85
1660 2106 5.593909 TCAGCAAGGAAAACAAAGATGAGAA 59.406 36.000 0.00 0.00 0.00 2.87
1668 2114 5.752955 GCAGTAATTCAGCAAGGAAAACAAA 59.247 36.000 0.00 0.00 0.00 2.83
1669 2115 5.068987 AGCAGTAATTCAGCAAGGAAAACAA 59.931 36.000 0.00 0.00 0.00 2.83
1670 2116 4.584325 AGCAGTAATTCAGCAAGGAAAACA 59.416 37.500 0.00 0.00 0.00 2.83
1671 2117 5.126396 AGCAGTAATTCAGCAAGGAAAAC 57.874 39.130 0.00 0.00 0.00 2.43
1672 2118 4.826733 TGAGCAGTAATTCAGCAAGGAAAA 59.173 37.500 0.00 0.00 0.00 2.29
1676 2122 4.978083 AATGAGCAGTAATTCAGCAAGG 57.022 40.909 0.00 0.00 0.00 3.61
1713 2212 6.598457 AGAAATGAACATTCTGATCTGGACAG 59.402 38.462 0.45 0.00 36.80 3.51
1727 3673 9.349713 TGACCAAACTAACTAAGAAATGAACAT 57.650 29.630 0.00 0.00 0.00 2.71
1791 3739 3.994392 AGAGGTACATGCAAAACACGTAG 59.006 43.478 0.00 0.00 25.11 3.51
1792 3740 3.743911 CAGAGGTACATGCAAAACACGTA 59.256 43.478 0.00 0.00 0.00 3.57
1793 3741 2.548057 CAGAGGTACATGCAAAACACGT 59.452 45.455 0.00 0.00 0.00 4.49
1794 3742 2.548057 ACAGAGGTACATGCAAAACACG 59.452 45.455 0.00 0.00 0.00 4.49
1795 3743 4.568152 AACAGAGGTACATGCAAAACAC 57.432 40.909 0.00 0.00 0.00 3.32
1809 3757 5.945784 TGGGTCATCTATTTTGAAACAGAGG 59.054 40.000 0.00 0.00 0.00 3.69
1870 3818 9.169592 CCCTCGGTTTTAAAATAGATGACTTAA 57.830 33.333 3.52 0.00 0.00 1.85
1871 3819 8.542080 TCCCTCGGTTTTAAAATAGATGACTTA 58.458 33.333 3.52 0.00 0.00 2.24
1872 3820 7.399634 TCCCTCGGTTTTAAAATAGATGACTT 58.600 34.615 3.52 0.00 0.00 3.01
1873 3821 6.954232 TCCCTCGGTTTTAAAATAGATGACT 58.046 36.000 3.52 0.00 0.00 3.41
1874 3822 6.822170 ACTCCCTCGGTTTTAAAATAGATGAC 59.178 38.462 3.52 0.00 0.00 3.06
1875 3823 6.954232 ACTCCCTCGGTTTTAAAATAGATGA 58.046 36.000 3.52 6.06 0.00 2.92
1876 3824 7.041984 GCTACTCCCTCGGTTTTAAAATAGATG 60.042 40.741 3.52 4.40 0.00 2.90
1877 3825 6.990939 GCTACTCCCTCGGTTTTAAAATAGAT 59.009 38.462 3.52 0.00 0.00 1.98
1878 3826 6.155737 AGCTACTCCCTCGGTTTTAAAATAGA 59.844 38.462 3.52 6.10 0.00 1.98
1879 3827 6.346896 AGCTACTCCCTCGGTTTTAAAATAG 58.653 40.000 3.52 1.90 0.00 1.73
1880 3828 6.303903 AGCTACTCCCTCGGTTTTAAAATA 57.696 37.500 3.52 0.00 0.00 1.40
1881 3829 5.175388 AGCTACTCCCTCGGTTTTAAAAT 57.825 39.130 3.52 0.00 0.00 1.82
1882 3830 4.628963 AGCTACTCCCTCGGTTTTAAAA 57.371 40.909 0.00 0.00 0.00 1.52
1883 3831 4.628963 AAGCTACTCCCTCGGTTTTAAA 57.371 40.909 0.00 0.00 0.00 1.52
1884 3832 4.628963 AAAGCTACTCCCTCGGTTTTAA 57.371 40.909 0.00 0.00 0.00 1.52
1885 3833 4.628963 AAAAGCTACTCCCTCGGTTTTA 57.371 40.909 0.00 0.00 36.81 1.52
1886 3834 3.503800 AAAAGCTACTCCCTCGGTTTT 57.496 42.857 0.00 0.00 34.62 2.43
1887 3835 4.224370 TGATAAAAGCTACTCCCTCGGTTT 59.776 41.667 0.00 0.00 0.00 3.27
1888 3836 3.773119 TGATAAAAGCTACTCCCTCGGTT 59.227 43.478 0.00 0.00 0.00 4.44
1889 3837 3.371965 TGATAAAAGCTACTCCCTCGGT 58.628 45.455 0.00 0.00 0.00 4.69
1890 3838 4.402056 TTGATAAAAGCTACTCCCTCGG 57.598 45.455 0.00 0.00 0.00 4.63
1891 3839 6.538742 TGATTTTGATAAAAGCTACTCCCTCG 59.461 38.462 4.28 0.00 37.64 4.63
1892 3840 7.770897 TCTGATTTTGATAAAAGCTACTCCCTC 59.229 37.037 4.28 0.00 37.64 4.30
1893 3841 7.633789 TCTGATTTTGATAAAAGCTACTCCCT 58.366 34.615 4.28 0.00 37.64 4.20
1894 3842 7.865706 TCTGATTTTGATAAAAGCTACTCCC 57.134 36.000 4.28 0.00 37.64 4.30
1895 3843 9.113838 TGATCTGATTTTGATAAAAGCTACTCC 57.886 33.333 4.28 0.00 37.64 3.85
1897 3845 9.678260 ACTGATCTGATTTTGATAAAAGCTACT 57.322 29.630 6.60 0.00 37.64 2.57
1900 3848 9.017509 TCAACTGATCTGATTTTGATAAAAGCT 57.982 29.630 6.60 0.00 37.64 3.74
1901 3849 9.630098 TTCAACTGATCTGATTTTGATAAAAGC 57.370 29.630 6.60 0.00 37.30 3.51
1906 3854 9.565090 CCCTATTCAACTGATCTGATTTTGATA 57.435 33.333 6.60 0.00 0.00 2.15
1907 3855 7.014038 GCCCTATTCAACTGATCTGATTTTGAT 59.986 37.037 6.60 0.97 0.00 2.57
1908 3856 6.319658 GCCCTATTCAACTGATCTGATTTTGA 59.680 38.462 6.60 3.62 0.00 2.69
1909 3857 6.095860 TGCCCTATTCAACTGATCTGATTTTG 59.904 38.462 6.60 1.28 0.00 2.44
1912 3860 5.378230 TGCCCTATTCAACTGATCTGATT 57.622 39.130 6.60 0.00 0.00 2.57
1924 3872 5.324409 AGTTTGACAGAAATGCCCTATTCA 58.676 37.500 0.00 0.00 0.00 2.57
2037 4016 1.471119 ACTCCTCCAATTGCATGCAG 58.529 50.000 21.50 9.50 0.00 4.41
2038 4017 1.546923 CAACTCCTCCAATTGCATGCA 59.453 47.619 18.46 18.46 0.00 3.96
2039 4018 1.738030 GCAACTCCTCCAATTGCATGC 60.738 52.381 11.82 11.82 46.37 4.06
2040 4019 2.288961 GCAACTCCTCCAATTGCATG 57.711 50.000 0.00 0.00 46.37 4.06
2056 4035 5.960113 ACCATATCGCTTTATTTTGTGCAA 58.040 33.333 0.00 0.00 0.00 4.08
2074 4053 2.793585 GCTCACGTTCGATTCGACCATA 60.794 50.000 8.55 0.00 34.89 2.74
2139 4887 7.767659 ACCCTACGGATATTTTACTCAGAAAAC 59.232 37.037 0.00 0.00 31.35 2.43
2169 4934 1.673009 GTGACCCATTTTCCGGCGA 60.673 57.895 9.30 0.00 0.00 5.54
2187 4992 6.480320 CGATTGGGAATTAGTTAAGTCAGAGG 59.520 42.308 2.33 0.00 32.39 3.69
2211 5021 2.974148 TGTGAACTGCTGCTGCCG 60.974 61.111 13.47 9.34 38.71 5.69
2222 5032 5.063186 GTGATGATGACTGATGAGTGTGAAC 59.937 44.000 0.00 0.00 30.16 3.18
2349 5345 1.151668 GTGTGATGACTGGTGAGTGC 58.848 55.000 0.00 0.00 30.16 4.40
2372 6747 7.961731 TTCTTTGAAGATCACATGGGAACAGC 61.962 42.308 0.00 0.00 38.31 4.40
2394 6769 9.740710 AGCTGTTAATTAATCTACCTTTGTTCT 57.259 29.630 0.31 0.00 0.00 3.01
2421 6796 2.095853 ACAAGCGCGTCCATTATTCTTG 59.904 45.455 8.43 11.61 36.48 3.02
2427 6802 1.231221 ACAAACAAGCGCGTCCATTA 58.769 45.000 8.43 0.00 0.00 1.90
2428 6803 0.383949 AACAAACAAGCGCGTCCATT 59.616 45.000 8.43 0.00 0.00 3.16
3265 7666 4.142902 GGGTCGTGATATTGTGAGTTTGTG 60.143 45.833 0.00 0.00 0.00 3.33
3266 7667 4.000988 GGGTCGTGATATTGTGAGTTTGT 58.999 43.478 0.00 0.00 0.00 2.83
3267 7668 3.062099 CGGGTCGTGATATTGTGAGTTTG 59.938 47.826 0.00 0.00 0.00 2.93
3268 7669 3.259064 CGGGTCGTGATATTGTGAGTTT 58.741 45.455 0.00 0.00 0.00 2.66
3269 7670 2.418197 CCGGGTCGTGATATTGTGAGTT 60.418 50.000 0.00 0.00 0.00 3.01
3270 7671 1.136305 CCGGGTCGTGATATTGTGAGT 59.864 52.381 0.00 0.00 0.00 3.41
3271 7672 1.852942 CCGGGTCGTGATATTGTGAG 58.147 55.000 0.00 0.00 0.00 3.51
3283 7684 3.446570 ACCTAACTCGCCGGGTCG 61.447 66.667 2.18 0.00 0.00 4.79
3284 7685 2.183555 CACCTAACTCGCCGGGTC 59.816 66.667 2.18 0.00 0.00 4.46
3361 7766 5.511545 GGTCTTAACACATAGGAGCCCATAG 60.512 48.000 0.00 0.00 33.36 2.23
3362 7767 4.347000 GGTCTTAACACATAGGAGCCCATA 59.653 45.833 0.00 0.00 33.36 2.74
3400 7814 2.924926 GGTTTATGTATCACGCACACGA 59.075 45.455 0.00 0.00 43.93 4.35
3556 8006 7.625395 GCACCGAAGTATTATTGTTGTCAATGA 60.625 37.037 4.06 0.00 43.17 2.57
3560 8010 5.242434 AGCACCGAAGTATTATTGTTGTCA 58.758 37.500 0.00 0.00 0.00 3.58
3619 8069 4.389890 TCTTGATTGTGCCATTAATGCC 57.610 40.909 10.11 0.00 0.00 4.40
3627 8078 4.281435 ACAATGTTGATCTTGATTGTGCCA 59.719 37.500 12.91 0.00 37.58 4.92
3680 8140 6.148315 TCAACTATGTTGCAAGACAGATTGAG 59.852 38.462 9.11 0.00 31.05 3.02
3737 8200 3.567585 GCCTCAGCTGAAAGAAGTTTCTT 59.432 43.478 18.85 1.35 42.39 2.52
3770 8233 0.969894 CGGACCCTCTCAACAGTTCT 59.030 55.000 0.00 0.00 0.00 3.01
3772 8235 1.645710 ATCGGACCCTCTCAACAGTT 58.354 50.000 0.00 0.00 0.00 3.16
3785 8248 4.792521 ATGTATCTCTTGCCTATCGGAC 57.207 45.455 0.00 0.00 0.00 4.79
3802 8265 9.797642 ATGAATGTAGATTGCTATCCAAATGTA 57.202 29.630 4.43 0.00 36.92 2.29
3825 8288 7.360353 CGCTTGAGATTCTTCAGTTTGTTATGA 60.360 37.037 0.00 0.00 0.00 2.15
3903 8369 8.379457 TCATCTGATGTTGATCTTGATGATTC 57.621 34.615 16.66 0.00 40.36 2.52
3948 8414 1.818060 CGGCTCTGCAGATAGCTAGAT 59.182 52.381 22.78 0.00 45.94 1.98
3949 8415 1.242989 CGGCTCTGCAGATAGCTAGA 58.757 55.000 22.78 0.00 45.94 2.43
3950 8416 0.243365 CCGGCTCTGCAGATAGCTAG 59.757 60.000 22.78 17.49 45.94 3.42
3951 8417 1.810606 GCCGGCTCTGCAGATAGCTA 61.811 60.000 22.15 0.00 45.94 3.32
3952 8418 3.136750 CCGGCTCTGCAGATAGCT 58.863 61.111 22.78 0.00 45.94 3.32
3953 8419 2.664518 GCCGGCTCTGCAGATAGC 60.665 66.667 22.15 17.89 45.96 2.97
3954 8420 2.030262 GGCCGGCTCTGCAGATAG 59.970 66.667 28.56 7.82 0.00 2.08
3955 8421 3.550431 GGGCCGGCTCTGCAGATA 61.550 66.667 28.56 0.00 0.00 1.98
3963 8429 4.209866 AATGGGATGGGCCGGCTC 62.210 66.667 28.56 25.91 37.63 4.70
3964 8430 4.209866 GAATGGGATGGGCCGGCT 62.210 66.667 28.56 6.33 37.63 5.52
3966 8432 2.588029 AAAGGAATGGGATGGGCCGG 62.588 60.000 0.00 0.00 37.63 6.13
3967 8433 0.687427 AAAAGGAATGGGATGGGCCG 60.687 55.000 0.00 0.00 37.63 6.13
3968 8434 1.123077 GAAAAGGAATGGGATGGGCC 58.877 55.000 0.00 0.00 0.00 5.80
3969 8435 2.034878 GAGAAAAGGAATGGGATGGGC 58.965 52.381 0.00 0.00 0.00 5.36
3970 8436 3.386932 TGAGAAAAGGAATGGGATGGG 57.613 47.619 0.00 0.00 0.00 4.00
3971 8437 4.284178 ACATGAGAAAAGGAATGGGATGG 58.716 43.478 0.00 0.00 0.00 3.51
3972 8438 8.696043 TTATACATGAGAAAAGGAATGGGATG 57.304 34.615 0.00 0.00 0.00 3.51
3973 8439 9.887862 AATTATACATGAGAAAAGGAATGGGAT 57.112 29.630 0.00 0.00 0.00 3.85
3974 8440 9.713684 AAATTATACATGAGAAAAGGAATGGGA 57.286 29.630 0.00 0.00 0.00 4.37
3975 8441 9.754382 CAAATTATACATGAGAAAAGGAATGGG 57.246 33.333 0.00 0.00 0.00 4.00
4015 8481 4.249638 AGGATACATAGCCCAGCAAAAA 57.750 40.909 0.00 0.00 41.41 1.94
4016 8482 3.951563 AGGATACATAGCCCAGCAAAA 57.048 42.857 0.00 0.00 41.41 2.44
4017 8483 4.351874 GTAGGATACATAGCCCAGCAAA 57.648 45.455 0.00 0.00 42.43 3.68
4030 8496 2.237392 GAGGGCCCATGATGTAGGATAC 59.763 54.545 27.56 0.00 43.42 2.24
4031 8497 2.114323 AGAGGGCCCATGATGTAGGATA 59.886 50.000 27.56 0.00 0.00 2.59
4032 8498 1.132267 AGAGGGCCCATGATGTAGGAT 60.132 52.381 27.56 0.00 0.00 3.24
4033 8499 0.268869 AGAGGGCCCATGATGTAGGA 59.731 55.000 27.56 0.00 0.00 2.94
4034 8500 0.689623 GAGAGGGCCCATGATGTAGG 59.310 60.000 27.56 0.00 0.00 3.18
4035 8501 0.689623 GGAGAGGGCCCATGATGTAG 59.310 60.000 27.56 0.00 0.00 2.74
4036 8502 2.854253 GGAGAGGGCCCATGATGTA 58.146 57.895 27.56 0.00 0.00 2.29
4037 8503 3.666122 GGAGAGGGCCCATGATGT 58.334 61.111 27.56 0.00 0.00 3.06
4100 8566 4.195334 ATGACCATCAGGGCCGGC 62.195 66.667 21.18 21.18 45.14 6.13
4101 8567 2.203252 CATGACCATCAGGGCCGG 60.203 66.667 0.00 0.00 45.14 6.13
4102 8568 1.820906 CACATGACCATCAGGGCCG 60.821 63.158 0.00 0.00 45.14 6.13
4103 8569 0.465097 CTCACATGACCATCAGGGCC 60.465 60.000 0.00 0.00 45.14 5.80
4104 8570 0.543277 TCTCACATGACCATCAGGGC 59.457 55.000 0.00 0.00 46.36 5.19
4105 8571 2.102757 CTCTCTCACATGACCATCAGGG 59.897 54.545 0.00 0.00 44.81 4.45
4106 8572 2.102757 CCTCTCTCACATGACCATCAGG 59.897 54.545 0.00 0.00 42.21 3.86
4107 8573 2.102757 CCCTCTCTCACATGACCATCAG 59.897 54.545 0.00 0.00 0.00 2.90
4108 8574 2.113807 CCCTCTCTCACATGACCATCA 58.886 52.381 0.00 0.00 0.00 3.07
4109 8575 1.415659 CCCCTCTCTCACATGACCATC 59.584 57.143 0.00 0.00 0.00 3.51
4110 8576 1.008815 TCCCCTCTCTCACATGACCAT 59.991 52.381 0.00 0.00 0.00 3.55
4111 8577 0.413434 TCCCCTCTCTCACATGACCA 59.587 55.000 0.00 0.00 0.00 4.02
4112 8578 1.415659 CATCCCCTCTCTCACATGACC 59.584 57.143 0.00 0.00 0.00 4.02
4113 8579 1.415659 CCATCCCCTCTCTCACATGAC 59.584 57.143 0.00 0.00 0.00 3.06
4114 8580 1.291939 TCCATCCCCTCTCTCACATGA 59.708 52.381 0.00 0.00 0.00 3.07
4115 8581 1.693062 CTCCATCCCCTCTCTCACATG 59.307 57.143 0.00 0.00 0.00 3.21
4116 8582 1.577729 TCTCCATCCCCTCTCTCACAT 59.422 52.381 0.00 0.00 0.00 3.21
4117 8583 1.010795 TCTCCATCCCCTCTCTCACA 58.989 55.000 0.00 0.00 0.00 3.58
4118 8584 1.216678 TCTCTCCATCCCCTCTCTCAC 59.783 57.143 0.00 0.00 0.00 3.51
4119 8585 1.498576 CTCTCTCCATCCCCTCTCTCA 59.501 57.143 0.00 0.00 0.00 3.27
4120 8586 1.780309 TCTCTCTCCATCCCCTCTCTC 59.220 57.143 0.00 0.00 0.00 3.20
4121 8587 1.782752 CTCTCTCTCCATCCCCTCTCT 59.217 57.143 0.00 0.00 0.00 3.10
4122 8588 1.203050 CCTCTCTCTCCATCCCCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
4123 8589 0.859760 CCTCTCTCTCCATCCCCTCT 59.140 60.000 0.00 0.00 0.00 3.69
4124 8590 0.831711 GCCTCTCTCTCCATCCCCTC 60.832 65.000 0.00 0.00 0.00 4.30
4125 8591 1.235696 GCCTCTCTCTCCATCCCCT 59.764 63.158 0.00 0.00 0.00 4.79
4126 8592 0.485099 TAGCCTCTCTCTCCATCCCC 59.515 60.000 0.00 0.00 0.00 4.81
4127 8593 2.390225 TTAGCCTCTCTCTCCATCCC 57.610 55.000 0.00 0.00 0.00 3.85
4128 8594 4.972751 AAATTAGCCTCTCTCTCCATCC 57.027 45.455 0.00 0.00 0.00 3.51
4205 8671 8.878769 GCCGATGGTGTATTATTTTTGAAAATT 58.121 29.630 6.98 0.00 39.24 1.82
4206 8672 7.494298 GGCCGATGGTGTATTATTTTTGAAAAT 59.506 33.333 6.88 6.88 41.24 1.82
4207 8673 6.814146 GGCCGATGGTGTATTATTTTTGAAAA 59.186 34.615 0.00 0.00 0.00 2.29
4208 8674 6.334202 GGCCGATGGTGTATTATTTTTGAAA 58.666 36.000 0.00 0.00 0.00 2.69
4209 8675 5.163499 GGGCCGATGGTGTATTATTTTTGAA 60.163 40.000 0.00 0.00 0.00 2.69
4210 8676 4.339814 GGGCCGATGGTGTATTATTTTTGA 59.660 41.667 0.00 0.00 0.00 2.69
4211 8677 4.340950 AGGGCCGATGGTGTATTATTTTTG 59.659 41.667 0.00 0.00 0.00 2.44
4212 8678 4.542697 AGGGCCGATGGTGTATTATTTTT 58.457 39.130 0.00 0.00 0.00 1.94
4213 8679 4.141251 AGAGGGCCGATGGTGTATTATTTT 60.141 41.667 0.00 0.00 0.00 1.82
4214 8680 3.394606 AGAGGGCCGATGGTGTATTATTT 59.605 43.478 0.00 0.00 0.00 1.40
4215 8681 2.979678 AGAGGGCCGATGGTGTATTATT 59.020 45.455 0.00 0.00 0.00 1.40
4216 8682 2.303022 CAGAGGGCCGATGGTGTATTAT 59.697 50.000 0.00 0.00 0.00 1.28
4217 8683 1.691976 CAGAGGGCCGATGGTGTATTA 59.308 52.381 0.00 0.00 0.00 0.98
4218 8684 0.469917 CAGAGGGCCGATGGTGTATT 59.530 55.000 0.00 0.00 0.00 1.89
4219 8685 2.044806 GCAGAGGGCCGATGGTGTAT 62.045 60.000 12.13 0.00 36.11 2.29
4220 8686 2.731571 GCAGAGGGCCGATGGTGTA 61.732 63.158 12.13 0.00 36.11 2.90
4221 8687 4.101448 GCAGAGGGCCGATGGTGT 62.101 66.667 12.13 0.00 36.11 4.16
4222 8688 3.790437 AGCAGAGGGCCGATGGTG 61.790 66.667 13.76 2.64 46.50 4.17
4223 8689 3.790437 CAGCAGAGGGCCGATGGT 61.790 66.667 9.52 9.52 46.50 3.55
4224 8690 4.559063 CCAGCAGAGGGCCGATGG 62.559 72.222 12.13 6.49 46.50 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.