Multiple sequence alignment - TraesCS5D01G265700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G265700 chr5D 100.000 3552 0 0 1 3552 370009023 370005472 0.000000e+00 6560
1 TraesCS5D01G265700 chr5D 83.834 433 61 7 1 428 99459928 99460356 1.540000e-108 403
2 TraesCS5D01G265700 chr5B 93.477 2560 138 10 1014 3552 439242572 439240021 0.000000e+00 3775
3 TraesCS5D01G265700 chr5B 88.783 419 41 5 36 453 439252757 439252344 3.160000e-140 508
4 TraesCS5D01G265700 chr5B 90.674 193 16 2 583 774 439252284 439252093 4.550000e-64 255
5 TraesCS5D01G265700 chr5B 83.173 208 18 5 757 962 439242762 439242570 1.310000e-39 174
6 TraesCS5D01G265700 chr5A 89.836 2873 192 54 731 3548 472436019 472433192 0.000000e+00 3596
7 TraesCS5D01G265700 chr7D 82.550 745 108 13 2828 3552 138286857 138286115 1.390000e-178 636
8 TraesCS5D01G265700 chr3D 80.754 743 123 12 2828 3552 355751996 355752736 2.390000e-156 562
9 TraesCS5D01G265700 chr3D 82.927 451 60 15 1 443 433616961 433616520 1.200000e-104 390
10 TraesCS5D01G265700 chr3D 83.141 433 65 7 1 428 560258845 560258416 4.300000e-104 388
11 TraesCS5D01G265700 chr3D 82.949 434 68 5 1 428 438564693 438565126 1.550000e-103 387
12 TraesCS5D01G265700 chr3D 83.255 424 63 7 34 453 98154785 98155204 2.000000e-102 383
13 TraesCS5D01G265700 chr3D 82.322 379 54 8 2828 3193 141656826 141657204 2.060000e-82 316
14 TraesCS5D01G265700 chr1D 80.714 700 112 15 2828 3507 419722175 419721479 1.130000e-144 523
15 TraesCS5D01G265700 chr1B 82.201 618 91 11 2828 3429 566830367 566829753 6.800000e-142 514
16 TraesCS5D01G265700 chr1B 83.565 432 62 8 1 427 311140089 311139662 2.570000e-106 396
17 TraesCS5D01G265700 chr3A 79.189 740 130 16 2828 3548 329495819 329496553 3.190000e-135 492
18 TraesCS5D01G265700 chr3A 79.646 452 84 7 3107 3552 575405284 575405733 5.720000e-83 318
19 TraesCS5D01G265700 chr4A 78.898 744 130 18 2828 3552 10219645 10220380 2.480000e-131 479
20 TraesCS5D01G265700 chr3B 82.299 548 80 9 2828 3361 344335889 344335345 3.230000e-125 459
21 TraesCS5D01G265700 chr2D 81.869 535 72 19 2899 3414 49355183 49354655 9.110000e-116 427
22 TraesCS5D01G265700 chr6D 83.406 458 61 11 1 453 354538396 354537949 9.180000e-111 411
23 TraesCS5D01G265700 chr7B 82.251 462 65 13 1 453 465787811 465788264 2.000000e-102 383
24 TraesCS5D01G265700 chr2B 76.966 534 86 23 2849 3361 749849804 749849287 1.630000e-68 270
25 TraesCS5D01G265700 chr7A 72.391 757 174 29 1160 1891 730764272 730765018 1.290000e-49 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G265700 chr5D 370005472 370009023 3551 True 6560.0 6560 100.0000 1 3552 1 chr5D.!!$R1 3551
1 TraesCS5D01G265700 chr5B 439240021 439242762 2741 True 1974.5 3775 88.3250 757 3552 2 chr5B.!!$R1 2795
2 TraesCS5D01G265700 chr5B 439252093 439252757 664 True 381.5 508 89.7285 36 774 2 chr5B.!!$R2 738
3 TraesCS5D01G265700 chr5A 472433192 472436019 2827 True 3596.0 3596 89.8360 731 3548 1 chr5A.!!$R1 2817
4 TraesCS5D01G265700 chr7D 138286115 138286857 742 True 636.0 636 82.5500 2828 3552 1 chr7D.!!$R1 724
5 TraesCS5D01G265700 chr3D 355751996 355752736 740 False 562.0 562 80.7540 2828 3552 1 chr3D.!!$F3 724
6 TraesCS5D01G265700 chr1D 419721479 419722175 696 True 523.0 523 80.7140 2828 3507 1 chr1D.!!$R1 679
7 TraesCS5D01G265700 chr1B 566829753 566830367 614 True 514.0 514 82.2010 2828 3429 1 chr1B.!!$R2 601
8 TraesCS5D01G265700 chr3A 329495819 329496553 734 False 492.0 492 79.1890 2828 3548 1 chr3A.!!$F1 720
9 TraesCS5D01G265700 chr4A 10219645 10220380 735 False 479.0 479 78.8980 2828 3552 1 chr4A.!!$F1 724
10 TraesCS5D01G265700 chr3B 344335345 344335889 544 True 459.0 459 82.2990 2828 3361 1 chr3B.!!$R1 533
11 TraesCS5D01G265700 chr2D 49354655 49355183 528 True 427.0 427 81.8690 2899 3414 1 chr2D.!!$R1 515
12 TraesCS5D01G265700 chr2B 749849287 749849804 517 True 270.0 270 76.9660 2849 3361 1 chr2B.!!$R1 512
13 TraesCS5D01G265700 chr7A 730764272 730765018 746 False 207.0 207 72.3910 1160 1891 1 chr7A.!!$F1 731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.177604 TCCGAGTACTCCTCCTCGTC 59.822 60.0 17.23 0.00 46.91 4.20 F
588 589 0.316204 ATAATACCTTCCGCGGTCCG 59.684 55.0 27.15 15.43 38.49 4.79 F
630 631 0.376152 GATGCCATGCACTTCACTCG 59.624 55.0 0.00 0.00 43.04 4.18 F
1816 1891 0.462047 GATCCAAGGCCGTCGTCATT 60.462 55.0 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1137 1176 1.372087 CTTCTGCTCCGAACCCATGC 61.372 60.000 0.0 0.0 0.0 4.06 R
2421 2496 0.543749 CCTCGCCTCAATTCCCTTCT 59.456 55.000 0.0 0.0 0.0 2.85 R
2428 2503 1.208293 GTCTTCTCCCTCGCCTCAATT 59.792 52.381 0.0 0.0 0.0 2.32 R
3317 3426 0.824109 TGATAACGCCCTCCTCAGTG 59.176 55.000 0.0 0.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.642154 TCTCATCCGAGTACTCCTCC 57.358 55.000 17.23 0.00 40.44 4.30
20 21 2.128535 TCTCATCCGAGTACTCCTCCT 58.871 52.381 17.23 0.00 40.44 3.69
21 22 2.105134 TCTCATCCGAGTACTCCTCCTC 59.895 54.545 17.23 0.00 40.44 3.71
23 24 0.838608 ATCCGAGTACTCCTCCTCGT 59.161 55.000 17.23 0.00 46.91 4.18
24 25 0.177604 TCCGAGTACTCCTCCTCGTC 59.822 60.000 17.23 0.00 46.91 4.20
25 26 1.152989 CCGAGTACTCCTCCTCGTCG 61.153 65.000 17.23 2.97 46.91 5.12
26 27 1.152989 CGAGTACTCCTCCTCGTCGG 61.153 65.000 17.23 0.00 44.14 4.79
27 28 0.177604 GAGTACTCCTCCTCGTCGGA 59.822 60.000 12.13 0.00 40.30 4.55
28 29 0.838608 AGTACTCCTCCTCGTCGGAT 59.161 55.000 0.00 0.00 42.12 4.18
29 30 0.945813 GTACTCCTCCTCGTCGGATG 59.054 60.000 0.00 0.00 42.12 3.51
30 31 0.835276 TACTCCTCCTCGTCGGATGA 59.165 55.000 0.00 0.00 42.12 2.92
31 32 2.326222 CTCCTCCTCGTCGGATGAG 58.674 63.158 18.34 18.34 44.61 2.90
32 33 1.791103 CTCCTCCTCGTCGGATGAGC 61.791 65.000 19.58 0.00 44.25 4.26
33 34 2.725008 CTCCTCGTCGGATGAGCC 59.275 66.667 19.58 0.00 42.12 4.70
61 62 5.238868 GGAGACTCAACATAGTGCTCGTATA 59.761 44.000 4.53 0.00 30.67 1.47
75 76 6.040504 AGTGCTCGTATATGTACTCCAAATCA 59.959 38.462 0.00 0.00 0.00 2.57
86 87 5.887598 TGTACTCCAAATCAGAATCCATTGG 59.112 40.000 0.00 0.00 41.47 3.16
127 128 4.799564 TTTTTAGCTCCGGCAATTCATT 57.200 36.364 0.00 0.00 41.70 2.57
138 139 4.050553 CGGCAATTCATTGAACAAGTGTT 58.949 39.130 0.15 0.00 40.14 3.32
141 142 4.211794 GCAATTCATTGAACAAGTGTTGGG 59.788 41.667 0.15 0.00 40.14 4.12
163 164 3.479489 CATGGTGAGTATGGCATAGCAA 58.521 45.455 7.61 0.00 0.00 3.91
175 176 1.338020 GCATAGCAAATGGTACCTGGC 59.662 52.381 14.36 11.09 0.00 4.85
215 216 0.784778 GTTGAACGGCGACAGAGAAG 59.215 55.000 16.62 0.00 0.00 2.85
219 220 0.667792 AACGGCGACAGAGAAGAAGC 60.668 55.000 16.62 0.00 0.00 3.86
223 224 1.153745 CGACAGAGAAGAAGCGGGG 60.154 63.158 0.00 0.00 0.00 5.73
253 254 1.081892 CTGGAATGCTGGAAGTGACG 58.918 55.000 0.00 0.00 35.30 4.35
258 259 3.265791 GAATGCTGGAAGTGACGAAGAT 58.734 45.455 0.00 0.00 35.30 2.40
261 262 1.728971 GCTGGAAGTGACGAAGATGTG 59.271 52.381 0.00 0.00 35.30 3.21
282 283 1.136329 AGTTCTGGCAGGGATGTGGT 61.136 55.000 15.73 0.00 0.00 4.16
283 284 0.962356 GTTCTGGCAGGGATGTGGTG 60.962 60.000 15.73 0.00 0.00 4.17
295 296 4.974721 GTGGTGTGGTGGCTGGGG 62.975 72.222 0.00 0.00 0.00 4.96
329 330 4.253685 CGGTGAAGGCAATAGAGAAAGAA 58.746 43.478 0.00 0.00 0.00 2.52
344 345 7.328404 AGAGAAAGAAGGAAGGAGAGAAAAT 57.672 36.000 0.00 0.00 0.00 1.82
346 347 6.846988 AGAAAGAAGGAAGGAGAGAAAATGT 58.153 36.000 0.00 0.00 0.00 2.71
353 354 3.990959 AGGAGAGAAAATGTGGAGGAC 57.009 47.619 0.00 0.00 0.00 3.85
354 355 2.234908 AGGAGAGAAAATGTGGAGGACG 59.765 50.000 0.00 0.00 0.00 4.79
381 382 1.605451 GGTCCGGGAAGGGTTTTGG 60.605 63.158 0.00 0.00 41.52 3.28
387 388 1.234820 GGAAGGGTTTTGGGTGGGT 59.765 57.895 0.00 0.00 0.00 4.51
389 390 1.152631 AAGGGTTTTGGGTGGGTCG 60.153 57.895 0.00 0.00 0.00 4.79
391 392 2.516909 GGTTTTGGGTGGGTCGGA 59.483 61.111 0.00 0.00 0.00 4.55
393 394 1.452801 GTTTTGGGTGGGTCGGAGA 59.547 57.895 0.00 0.00 0.00 3.71
396 397 1.131303 TTTGGGTGGGTCGGAGATGT 61.131 55.000 0.00 0.00 40.67 3.06
407 408 0.945813 CGGAGATGTCGGAGTCCTAC 59.054 60.000 7.77 7.30 0.00 3.18
410 411 2.484417 GGAGATGTCGGAGTCCTACGTA 60.484 54.545 8.48 0.00 38.28 3.57
415 416 2.093288 TGTCGGAGTCCTACGTATCTGT 60.093 50.000 7.77 0.00 38.28 3.41
430 431 1.633774 TCTGTTGTCCAGACTCCTCC 58.366 55.000 0.00 0.00 45.34 4.30
431 432 1.148027 TCTGTTGTCCAGACTCCTCCT 59.852 52.381 0.00 0.00 45.34 3.69
432 433 1.274728 CTGTTGTCCAGACTCCTCCTG 59.725 57.143 0.00 0.00 44.49 3.86
441 442 3.008485 CCAGACTCCTCCTGTAAAGCTTT 59.992 47.826 17.30 17.30 0.00 3.51
442 443 4.249661 CAGACTCCTCCTGTAAAGCTTTC 58.750 47.826 16.57 8.24 0.00 2.62
453 454 6.093495 TCCTGTAAAGCTTTCCATATTTGTCG 59.907 38.462 16.57 0.00 0.00 4.35
454 455 6.093495 CCTGTAAAGCTTTCCATATTTGTCGA 59.907 38.462 16.57 0.00 0.00 4.20
455 456 7.361713 CCTGTAAAGCTTTCCATATTTGTCGAA 60.362 37.037 16.57 0.00 0.00 3.71
456 457 7.877003 TGTAAAGCTTTCCATATTTGTCGAAA 58.123 30.769 16.57 0.00 0.00 3.46
457 458 8.353684 TGTAAAGCTTTCCATATTTGTCGAAAA 58.646 29.630 16.57 0.00 0.00 2.29
458 459 9.187455 GTAAAGCTTTCCATATTTGTCGAAAAA 57.813 29.630 16.57 2.60 0.00 1.94
475 476 2.841160 AAAAACACGTCTGGGCCGC 61.841 57.895 0.00 0.00 0.00 6.53
491 492 1.956297 CCGCCCCGTAAAATGATACA 58.044 50.000 0.00 0.00 0.00 2.29
492 493 2.500229 CCGCCCCGTAAAATGATACAT 58.500 47.619 0.00 0.00 0.00 2.29
498 499 5.070001 CCCCGTAAAATGATACATGACCAT 58.930 41.667 0.00 0.00 0.00 3.55
518 519 9.953697 TGACCATGTTAAACACATACTAAAAAC 57.046 29.630 0.00 0.00 45.06 2.43
519 520 9.401873 GACCATGTTAAACACATACTAAAAACC 57.598 33.333 0.00 0.00 45.06 3.27
520 521 8.915036 ACCATGTTAAACACATACTAAAAACCA 58.085 29.630 0.00 0.00 45.06 3.67
521 522 9.921637 CCATGTTAAACACATACTAAAAACCAT 57.078 29.630 0.00 0.00 45.06 3.55
529 530 8.276252 ACACATACTAAAAACCATACATGACC 57.724 34.615 0.00 0.00 0.00 4.02
530 531 7.885922 ACACATACTAAAAACCATACATGACCA 59.114 33.333 0.00 0.00 0.00 4.02
531 532 8.181573 CACATACTAAAAACCATACATGACCAC 58.818 37.037 0.00 0.00 0.00 4.16
532 533 5.873179 ACTAAAAACCATACATGACCACG 57.127 39.130 0.00 0.00 0.00 4.94
533 534 5.310451 ACTAAAAACCATACATGACCACGT 58.690 37.500 0.00 0.00 0.00 4.49
534 535 5.766174 ACTAAAAACCATACATGACCACGTT 59.234 36.000 0.00 0.00 0.00 3.99
535 536 4.497473 AAAACCATACATGACCACGTTG 57.503 40.909 0.00 0.00 0.00 4.10
536 537 3.410631 AACCATACATGACCACGTTGA 57.589 42.857 0.00 0.00 0.00 3.18
537 538 3.410631 ACCATACATGACCACGTTGAA 57.589 42.857 0.00 0.00 0.00 2.69
538 539 3.950397 ACCATACATGACCACGTTGAAT 58.050 40.909 0.00 0.00 0.00 2.57
539 540 5.092554 ACCATACATGACCACGTTGAATA 57.907 39.130 0.00 0.00 0.00 1.75
540 541 4.873827 ACCATACATGACCACGTTGAATAC 59.126 41.667 0.00 0.00 0.00 1.89
541 542 4.873259 CCATACATGACCACGTTGAATACA 59.127 41.667 0.00 0.00 0.00 2.29
542 543 5.527214 CCATACATGACCACGTTGAATACAT 59.473 40.000 0.00 0.00 0.00 2.29
546 547 2.997303 TGACCACGTTGAATACATTCCG 59.003 45.455 0.00 0.33 35.97 4.30
553 554 0.537653 TGAATACATTCCGCGGTCCA 59.462 50.000 27.15 11.18 35.97 4.02
554 555 1.217882 GAATACATTCCGCGGTCCAG 58.782 55.000 27.15 15.89 0.00 3.86
571 572 0.817654 CAGACAGCACAGTCCGGATA 59.182 55.000 7.81 0.00 39.34 2.59
572 573 1.204704 CAGACAGCACAGTCCGGATAA 59.795 52.381 7.81 0.00 39.34 1.75
576 577 2.102588 ACAGCACAGTCCGGATAATACC 59.897 50.000 7.81 0.00 0.00 2.73
577 578 2.365617 CAGCACAGTCCGGATAATACCT 59.634 50.000 7.81 0.00 0.00 3.08
578 579 3.039011 AGCACAGTCCGGATAATACCTT 58.961 45.455 7.81 0.00 0.00 3.50
579 580 3.069729 AGCACAGTCCGGATAATACCTTC 59.930 47.826 7.81 0.00 0.00 3.46
580 581 3.802675 GCACAGTCCGGATAATACCTTCC 60.803 52.174 7.81 0.00 0.00 3.46
586 587 2.075979 GGATAATACCTTCCGCGGTC 57.924 55.000 27.15 11.71 38.49 4.79
587 588 1.337541 GGATAATACCTTCCGCGGTCC 60.338 57.143 27.15 17.37 38.49 4.46
588 589 0.316204 ATAATACCTTCCGCGGTCCG 59.684 55.000 27.15 15.43 38.49 4.79
630 631 0.376152 GATGCCATGCACTTCACTCG 59.624 55.000 0.00 0.00 43.04 4.18
641 642 3.844943 GCACTTCACTCGTTTTTCTTCGG 60.845 47.826 0.00 0.00 0.00 4.30
642 643 3.308866 CACTTCACTCGTTTTTCTTCGGT 59.691 43.478 0.00 0.00 0.00 4.69
648 649 1.277440 GTTTTTCTTCGGTCGCGCA 59.723 52.632 8.75 0.00 0.00 6.09
661 662 3.267860 GCGCATGCGGAAGAGGAG 61.268 66.667 38.22 10.57 40.19 3.69
694 695 1.737838 CCACTTGCTCGCCAGAATAA 58.262 50.000 0.00 0.00 0.00 1.40
718 719 2.362077 GGCAACTTGACATGACTGGTTT 59.638 45.455 0.00 0.00 0.00 3.27
719 720 3.374745 GCAACTTGACATGACTGGTTTG 58.625 45.455 0.00 0.00 0.00 2.93
720 721 3.066621 GCAACTTGACATGACTGGTTTGA 59.933 43.478 0.00 0.00 0.00 2.69
721 722 4.790766 GCAACTTGACATGACTGGTTTGAG 60.791 45.833 0.00 0.00 0.00 3.02
723 724 3.879295 ACTTGACATGACTGGTTTGAGTG 59.121 43.478 0.00 0.00 0.00 3.51
733 734 6.931838 TGACTGGTTTGAGTGTAGTTATAGG 58.068 40.000 0.00 0.00 0.00 2.57
756 758 1.541310 TTGCCTAGTGGTCCGACAGG 61.541 60.000 0.00 0.00 39.46 4.00
759 761 1.682684 CTAGTGGTCCGACAGGCCT 60.683 63.158 0.00 0.00 37.47 5.19
766 768 1.014564 GTCCGACAGGCCTCGAAAAG 61.015 60.000 15.49 0.00 35.58 2.27
812 814 3.413522 GTGTGCTCCCACGTACTAC 57.586 57.895 0.00 0.00 45.04 2.73
813 815 0.599558 GTGTGCTCCCACGTACTACA 59.400 55.000 0.00 0.00 45.04 2.74
815 817 0.886563 GTGCTCCCACGTACTACAGT 59.113 55.000 0.00 0.00 31.34 3.55
816 818 2.086869 GTGCTCCCACGTACTACAGTA 58.913 52.381 0.00 0.00 31.34 2.74
817 819 2.086869 TGCTCCCACGTACTACAGTAC 58.913 52.381 9.11 9.11 45.47 2.73
818 820 1.403323 GCTCCCACGTACTACAGTACC 59.597 57.143 12.71 0.00 46.01 3.34
819 821 2.943199 GCTCCCACGTACTACAGTACCT 60.943 54.545 12.71 0.47 46.01 3.08
820 822 3.350833 CTCCCACGTACTACAGTACCTT 58.649 50.000 12.71 0.00 46.01 3.50
821 823 3.084039 TCCCACGTACTACAGTACCTTG 58.916 50.000 12.71 10.14 46.01 3.61
824 826 1.821136 ACGTACTACAGTACCTTGGGC 59.179 52.381 12.71 0.00 46.01 5.36
825 827 2.097825 CGTACTACAGTACCTTGGGCT 58.902 52.381 12.71 0.00 46.01 5.19
830 850 1.145571 ACAGTACCTTGGGCTTTGGA 58.854 50.000 0.00 0.00 0.00 3.53
846 866 1.519455 GGACGTTCCAGCAGATCGG 60.519 63.158 10.69 0.00 41.13 4.18
863 883 0.747255 CGGGTGGTCTCGAATCATCT 59.253 55.000 0.00 0.00 0.00 2.90
869 889 2.035632 GGTCTCGAATCATCTGGGTCT 58.964 52.381 0.00 0.00 0.00 3.85
870 890 2.432510 GGTCTCGAATCATCTGGGTCTT 59.567 50.000 0.00 0.00 0.00 3.01
871 891 3.452474 GTCTCGAATCATCTGGGTCTTG 58.548 50.000 0.00 0.00 0.00 3.02
872 892 3.099905 TCTCGAATCATCTGGGTCTTGT 58.900 45.455 0.00 0.00 0.00 3.16
873 893 3.118992 TCTCGAATCATCTGGGTCTTGTG 60.119 47.826 0.00 0.00 0.00 3.33
874 894 2.831526 TCGAATCATCTGGGTCTTGTGA 59.168 45.455 0.00 0.00 0.00 3.58
875 895 3.260632 TCGAATCATCTGGGTCTTGTGAA 59.739 43.478 0.00 0.00 0.00 3.18
909 929 1.066430 TCTTGTGAACGGCCTATGGAC 60.066 52.381 0.00 0.00 0.00 4.02
915 935 0.907704 AACGGCCTATGGACCTCACA 60.908 55.000 0.00 0.00 0.00 3.58
928 948 2.943345 CTCACAGGCGTTGTCGTGC 61.943 63.158 0.00 0.00 38.16 5.34
984 1011 0.539669 AGCTACCCCTGCAAAACCAC 60.540 55.000 0.00 0.00 0.00 4.16
986 1013 0.898326 CTACCCCTGCAAAACCACCC 60.898 60.000 0.00 0.00 0.00 4.61
987 1014 2.374781 TACCCCTGCAAAACCACCCC 62.375 60.000 0.00 0.00 0.00 4.95
989 1016 3.302344 CCTGCAAAACCACCCCGG 61.302 66.667 0.00 0.00 42.50 5.73
1010 1040 7.166167 CCCGGTAAAAGTATCCTTTATATGCT 58.834 38.462 0.00 0.00 40.01 3.79
1011 1041 7.333672 CCCGGTAAAAGTATCCTTTATATGCTC 59.666 40.741 0.00 0.00 40.01 4.26
1042 1072 1.005137 GTAGCTAGGAACGTCGTCGAG 60.005 57.143 9.47 0.00 40.62 4.04
1276 1315 2.359107 CACACCGAGCTGCACCAT 60.359 61.111 1.02 0.00 0.00 3.55
1816 1891 0.462047 GATCCAAGGCCGTCGTCATT 60.462 55.000 0.00 0.00 0.00 2.57
1849 1924 0.526662 ACATGGAGAAGGACGTCGTC 59.473 55.000 17.16 17.16 0.00 4.20
1885 1960 2.754658 CTCCCGCCCGTCTACACT 60.755 66.667 0.00 0.00 0.00 3.55
2135 2210 3.692406 GGGTTCTGCGGTCCGACT 61.692 66.667 17.49 0.00 0.00 4.18
2420 2495 1.460305 AGGGAGATGATGGTCGGGG 60.460 63.158 0.00 0.00 0.00 5.73
2421 2496 1.459539 GGGAGATGATGGTCGGGGA 60.460 63.158 0.00 0.00 0.00 4.81
2428 2503 1.382695 GATGGTCGGGGAGAAGGGA 60.383 63.158 0.00 0.00 0.00 4.20
2431 2506 0.549169 TGGTCGGGGAGAAGGGAATT 60.549 55.000 0.00 0.00 0.00 2.17
2665 2750 8.687292 TGAATGAGCTTCTAATAATCTGCAAT 57.313 30.769 0.00 0.00 34.75 3.56
2738 2823 8.810652 CTGAATAAGCTGATAAGGAAGTCTAC 57.189 38.462 0.00 0.00 0.00 2.59
2757 2842 1.922447 ACTGGCTAATGGGGTTGATCA 59.078 47.619 0.00 0.00 0.00 2.92
2845 2930 8.680039 ACTATACTTCGAGCAGTTATCTAGTT 57.320 34.615 0.00 0.00 0.00 2.24
2872 2957 3.126001 TCAACTTCCACGAGAGCAAAT 57.874 42.857 0.00 0.00 0.00 2.32
2879 2964 4.801330 TCCACGAGAGCAAATTCTTCTA 57.199 40.909 0.00 0.00 0.00 2.10
3302 3411 6.612247 AATAAGTGTGTGTCGACAAAATGA 57.388 33.333 21.95 1.82 32.49 2.57
3312 3421 6.367695 TGTGTCGACAAAATGACTATACAAGG 59.632 38.462 21.95 0.00 36.10 3.61
3317 3426 7.972277 TCGACAAAATGACTATACAAGGTACTC 59.028 37.037 0.00 0.00 38.49 2.59
3333 3445 0.251653 ACTCACTGAGGAGGGCGTTA 60.252 55.000 10.86 0.00 39.27 3.18
3334 3446 1.115467 CTCACTGAGGAGGGCGTTAT 58.885 55.000 0.00 0.00 0.00 1.89
3347 3459 5.589050 GGAGGGCGTTATCAAGAATTACTTT 59.411 40.000 0.00 0.00 36.61 2.66
3349 3461 5.944007 AGGGCGTTATCAAGAATTACTTTGT 59.056 36.000 0.00 0.00 36.61 2.83
3350 3462 6.433093 AGGGCGTTATCAAGAATTACTTTGTT 59.567 34.615 0.00 0.00 36.61 2.83
3434 3547 2.484287 AAAGGTCGCATGGGGTCCAG 62.484 60.000 20.22 0.00 36.75 3.86
3441 3554 1.886222 CGCATGGGGTCCAGAAAGAAA 60.886 52.381 0.89 0.00 36.75 2.52
3446 3559 5.482006 CATGGGGTCCAGAAAGAAATTTTC 58.518 41.667 0.66 0.66 36.75 2.29
3448 3563 3.901222 GGGGTCCAGAAAGAAATTTTCCA 59.099 43.478 5.52 0.00 0.00 3.53
3451 3567 5.279006 GGGTCCAGAAAGAAATTTTCCACTC 60.279 44.000 5.52 1.02 0.00 3.51
3511 3628 6.183360 GGTTTTGGCAATATACATGGCTAAGT 60.183 38.462 0.00 0.00 43.24 2.24
3548 3667 1.787155 GCAATACACACGGCTCTATCG 59.213 52.381 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.177604 TCCGACGAGGAGGAGTACTC 59.822 60.000 14.87 14.87 45.98 2.59
9 10 2.294890 TCCGACGAGGAGGAGTACT 58.705 57.895 0.00 0.00 45.98 2.73
25 26 2.065906 GAGTCTCCGACGGCTCATCC 62.066 65.000 9.66 0.00 37.67 3.51
26 27 1.357334 GAGTCTCCGACGGCTCATC 59.643 63.158 9.66 1.00 37.67 2.92
27 28 0.965866 TTGAGTCTCCGACGGCTCAT 60.966 55.000 19.27 2.86 37.74 2.90
28 29 1.602605 TTGAGTCTCCGACGGCTCA 60.603 57.895 15.97 15.97 37.67 4.26
29 30 1.153997 GTTGAGTCTCCGACGGCTC 60.154 63.158 9.66 10.93 37.67 4.70
30 31 1.251527 ATGTTGAGTCTCCGACGGCT 61.252 55.000 9.66 0.00 37.67 5.52
31 32 0.454600 TATGTTGAGTCTCCGACGGC 59.545 55.000 9.66 0.00 37.67 5.68
32 33 1.743958 ACTATGTTGAGTCTCCGACGG 59.256 52.381 7.84 7.84 37.67 4.79
33 34 2.786854 CACTATGTTGAGTCTCCGACG 58.213 52.381 0.00 0.00 37.67 5.12
34 35 2.164624 AGCACTATGTTGAGTCTCCGAC 59.835 50.000 0.00 0.00 0.00 4.79
35 36 2.423892 GAGCACTATGTTGAGTCTCCGA 59.576 50.000 0.00 0.00 0.00 4.55
36 37 2.792890 CGAGCACTATGTTGAGTCTCCG 60.793 54.545 0.00 0.00 0.00 4.63
37 38 2.164624 ACGAGCACTATGTTGAGTCTCC 59.835 50.000 0.00 0.00 0.00 3.71
38 39 3.495670 ACGAGCACTATGTTGAGTCTC 57.504 47.619 0.00 0.00 0.00 3.36
39 40 6.263392 ACATATACGAGCACTATGTTGAGTCT 59.737 38.462 0.00 0.00 33.42 3.24
48 49 7.520451 TTTGGAGTACATATACGAGCACTAT 57.480 36.000 0.00 0.00 36.33 2.12
61 62 6.548622 CCAATGGATTCTGATTTGGAGTACAT 59.451 38.462 0.00 0.00 39.33 2.29
75 76 5.492524 TCCCTTCTTTCTACCAATGGATTCT 59.507 40.000 6.16 0.00 0.00 2.40
110 111 2.682856 GTTCAATGAATTGCCGGAGCTA 59.317 45.455 5.05 0.00 40.80 3.32
116 117 3.641648 ACACTTGTTCAATGAATTGCCG 58.358 40.909 0.00 0.00 37.68 5.69
119 120 4.211794 GCCCAACACTTGTTCAATGAATTG 59.788 41.667 0.00 0.00 35.83 2.32
127 128 1.039068 CCATGCCCAACACTTGTTCA 58.961 50.000 0.00 0.00 35.83 3.18
138 139 1.227102 GCCATACTCACCATGCCCA 59.773 57.895 0.00 0.00 0.00 5.36
141 142 1.808945 GCTATGCCATACTCACCATGC 59.191 52.381 0.00 0.00 0.00 4.06
163 164 4.123545 GCCCCGCCAGGTACCATT 62.124 66.667 15.94 0.00 35.12 3.16
186 187 1.597461 CCGTTCAACCCCTCTCCTC 59.403 63.158 0.00 0.00 0.00 3.71
187 188 2.593956 GCCGTTCAACCCCTCTCCT 61.594 63.158 0.00 0.00 0.00 3.69
223 224 4.115199 ATTCCAGCCGGGCTCCAC 62.115 66.667 20.97 0.00 36.40 4.02
232 233 0.322816 TCACTTCCAGCATTCCAGCC 60.323 55.000 0.00 0.00 34.23 4.85
233 234 0.807496 GTCACTTCCAGCATTCCAGC 59.193 55.000 0.00 0.00 0.00 4.85
253 254 2.354259 CTGCCAGAACTCCACATCTTC 58.646 52.381 0.00 0.00 0.00 2.87
258 259 0.842030 ATCCCTGCCAGAACTCCACA 60.842 55.000 0.00 0.00 0.00 4.17
261 262 0.393537 CACATCCCTGCCAGAACTCC 60.394 60.000 0.00 0.00 0.00 3.85
282 283 2.858476 ATCACCCCAGCCACCACA 60.858 61.111 0.00 0.00 0.00 4.17
283 284 2.361610 CATCACCCCAGCCACCAC 60.362 66.667 0.00 0.00 0.00 4.16
295 296 3.950794 TTCACCGCCGCTCCATCAC 62.951 63.158 0.00 0.00 0.00 3.06
329 330 3.265479 CCTCCACATTTTCTCTCCTTCCT 59.735 47.826 0.00 0.00 0.00 3.36
354 355 3.540367 TTCCCGGACCCACGCTTTC 62.540 63.158 0.73 0.00 0.00 2.62
368 369 1.535444 CCCACCCAAAACCCTTCCC 60.535 63.158 0.00 0.00 0.00 3.97
369 370 0.830444 GACCCACCCAAAACCCTTCC 60.830 60.000 0.00 0.00 0.00 3.46
381 382 2.494918 CGACATCTCCGACCCACC 59.505 66.667 0.00 0.00 0.00 4.61
387 388 0.835276 TAGGACTCCGACATCTCCGA 59.165 55.000 0.00 0.00 0.00 4.55
389 390 0.945813 CGTAGGACTCCGACATCTCC 59.054 60.000 8.84 0.00 0.00 3.71
391 392 2.996249 TACGTAGGACTCCGACATCT 57.004 50.000 8.84 0.00 0.00 2.90
393 394 3.139850 CAGATACGTAGGACTCCGACAT 58.860 50.000 8.84 0.00 0.00 3.06
396 397 2.941064 CAACAGATACGTAGGACTCCGA 59.059 50.000 0.08 0.00 0.00 4.55
415 416 2.992847 TACAGGAGGAGTCTGGACAA 57.007 50.000 3.51 0.00 36.62 3.18
428 429 6.093495 CGACAAATATGGAAAGCTTTACAGGA 59.907 38.462 27.31 18.58 33.84 3.86
430 431 7.072177 TCGACAAATATGGAAAGCTTTACAG 57.928 36.000 27.31 16.44 33.84 2.74
431 432 7.441890 TTCGACAAATATGGAAAGCTTTACA 57.558 32.000 25.97 25.97 35.06 2.41
432 433 8.736751 TTTTCGACAAATATGGAAAGCTTTAC 57.263 30.769 14.93 14.93 30.88 2.01
457 458 2.841160 GCGGCCCAGACGTGTTTTT 61.841 57.895 0.00 0.00 35.91 1.94
458 459 3.284449 GCGGCCCAGACGTGTTTT 61.284 61.111 0.00 0.00 35.91 2.43
469 470 3.523668 CATTTTACGGGGCGGCCC 61.524 66.667 36.43 36.43 44.51 5.80
471 472 0.589708 GTATCATTTTACGGGGCGGC 59.410 55.000 0.00 0.00 0.00 6.53
473 474 3.059188 GTCATGTATCATTTTACGGGGCG 60.059 47.826 0.00 0.00 0.00 6.13
475 476 4.456535 TGGTCATGTATCATTTTACGGGG 58.543 43.478 0.00 0.00 0.00 5.73
505 506 8.181573 GTGGTCATGTATGGTTTTTAGTATGTG 58.818 37.037 0.00 0.00 0.00 3.21
507 508 7.065324 ACGTGGTCATGTATGGTTTTTAGTATG 59.935 37.037 0.00 0.00 0.00 2.39
509 510 6.465948 ACGTGGTCATGTATGGTTTTTAGTA 58.534 36.000 0.00 0.00 0.00 1.82
510 511 5.310451 ACGTGGTCATGTATGGTTTTTAGT 58.690 37.500 0.00 0.00 0.00 2.24
511 512 5.873179 ACGTGGTCATGTATGGTTTTTAG 57.127 39.130 0.00 0.00 0.00 1.85
512 513 5.763698 TCAACGTGGTCATGTATGGTTTTTA 59.236 36.000 0.00 0.00 0.00 1.52
513 514 4.580995 TCAACGTGGTCATGTATGGTTTTT 59.419 37.500 0.00 0.00 0.00 1.94
514 515 4.138290 TCAACGTGGTCATGTATGGTTTT 58.862 39.130 0.00 0.00 0.00 2.43
515 516 3.745799 TCAACGTGGTCATGTATGGTTT 58.254 40.909 0.00 0.00 0.00 3.27
516 517 3.410631 TCAACGTGGTCATGTATGGTT 57.589 42.857 0.00 0.00 0.00 3.67
517 518 3.410631 TTCAACGTGGTCATGTATGGT 57.589 42.857 0.00 0.00 0.00 3.55
518 519 4.873259 TGTATTCAACGTGGTCATGTATGG 59.127 41.667 0.00 0.00 0.00 2.74
519 520 6.603237 ATGTATTCAACGTGGTCATGTATG 57.397 37.500 0.00 0.00 0.00 2.39
520 521 6.260050 GGAATGTATTCAACGTGGTCATGTAT 59.740 38.462 6.90 0.00 38.53 2.29
521 522 5.583061 GGAATGTATTCAACGTGGTCATGTA 59.417 40.000 6.90 0.00 38.53 2.29
522 523 4.394920 GGAATGTATTCAACGTGGTCATGT 59.605 41.667 6.90 0.00 38.53 3.21
523 524 4.494035 CGGAATGTATTCAACGTGGTCATG 60.494 45.833 6.90 0.00 38.53 3.07
524 525 3.621268 CGGAATGTATTCAACGTGGTCAT 59.379 43.478 6.90 0.00 38.53 3.06
525 526 2.997303 CGGAATGTATTCAACGTGGTCA 59.003 45.455 6.90 0.00 38.53 4.02
526 527 2.222953 GCGGAATGTATTCAACGTGGTC 60.223 50.000 6.90 0.00 38.53 4.02
527 528 1.735571 GCGGAATGTATTCAACGTGGT 59.264 47.619 6.90 0.00 38.53 4.16
528 529 1.267334 CGCGGAATGTATTCAACGTGG 60.267 52.381 0.00 0.00 38.53 4.94
529 530 1.267334 CCGCGGAATGTATTCAACGTG 60.267 52.381 24.07 11.24 38.53 4.49
530 531 1.003851 CCGCGGAATGTATTCAACGT 58.996 50.000 24.07 0.00 38.53 3.99
531 532 1.003851 ACCGCGGAATGTATTCAACG 58.996 50.000 35.90 0.00 38.53 4.10
532 533 1.329599 GGACCGCGGAATGTATTCAAC 59.670 52.381 35.90 0.85 38.53 3.18
533 534 1.066071 TGGACCGCGGAATGTATTCAA 60.066 47.619 35.90 7.53 38.53 2.69
534 535 0.537653 TGGACCGCGGAATGTATTCA 59.462 50.000 35.90 10.70 38.53 2.57
535 536 1.202486 TCTGGACCGCGGAATGTATTC 60.202 52.381 35.90 17.16 36.08 1.75
536 537 0.828022 TCTGGACCGCGGAATGTATT 59.172 50.000 35.90 7.12 0.00 1.89
537 538 0.104304 GTCTGGACCGCGGAATGTAT 59.896 55.000 35.90 8.10 0.00 2.29
538 539 1.252215 TGTCTGGACCGCGGAATGTA 61.252 55.000 35.90 11.42 0.00 2.29
539 540 2.264794 GTCTGGACCGCGGAATGT 59.735 61.111 35.90 9.58 0.00 2.71
540 541 1.811266 CTGTCTGGACCGCGGAATG 60.811 63.158 35.90 18.24 0.00 2.67
541 542 2.579201 CTGTCTGGACCGCGGAAT 59.421 61.111 35.90 11.07 0.00 3.01
542 543 4.373116 GCTGTCTGGACCGCGGAA 62.373 66.667 35.90 16.06 32.23 4.30
546 547 2.740055 CTGTGCTGTCTGGACCGC 60.740 66.667 9.59 9.59 41.13 5.68
553 554 1.557099 TTATCCGGACTGTGCTGTCT 58.443 50.000 6.12 0.00 37.16 3.41
554 555 2.604046 ATTATCCGGACTGTGCTGTC 57.396 50.000 6.12 1.31 36.31 3.51
571 572 2.497770 CGGACCGCGGAAGGTATT 59.502 61.111 35.90 7.12 46.09 1.89
572 573 3.534056 CCGGACCGCGGAAGGTAT 61.534 66.667 35.90 8.10 46.09 2.73
576 577 4.925576 CGATCCGGACCGCGGAAG 62.926 72.222 35.90 21.35 39.14 3.46
593 594 2.662527 TCCAAAACCGTCGGCGAC 60.663 61.111 29.06 29.06 41.33 5.19
594 595 2.162338 ATCTCCAAAACCGTCGGCGA 62.162 55.000 12.93 4.99 41.33 5.54
595 596 1.740296 ATCTCCAAAACCGTCGGCG 60.740 57.895 12.28 0.29 37.95 6.46
596 597 1.794222 CATCTCCAAAACCGTCGGC 59.206 57.895 12.28 0.00 0.00 5.54
597 598 1.644786 GGCATCTCCAAAACCGTCGG 61.645 60.000 10.48 10.48 34.01 4.79
598 599 0.953471 TGGCATCTCCAAAACCGTCG 60.953 55.000 0.00 0.00 43.21 5.12
630 631 0.110373 ATGCGCGACCGAAGAAAAAC 60.110 50.000 12.10 0.00 36.29 2.43
648 649 1.115930 ATACCGCTCCTCTTCCGCAT 61.116 55.000 0.00 0.00 0.00 4.73
661 662 1.972660 AAGTGGCCAGGAGATACCGC 61.973 60.000 5.11 0.00 44.74 5.68
687 688 4.944962 TGTCAAGTTGCCGATTATTCTG 57.055 40.909 0.00 0.00 0.00 3.02
694 695 2.079158 CAGTCATGTCAAGTTGCCGAT 58.921 47.619 0.00 0.00 0.00 4.18
718 719 3.429822 GCAACCGCCTATAACTACACTCA 60.430 47.826 0.00 0.00 0.00 3.41
719 720 3.121544 GCAACCGCCTATAACTACACTC 58.878 50.000 0.00 0.00 0.00 3.51
720 721 3.175109 GCAACCGCCTATAACTACACT 57.825 47.619 0.00 0.00 0.00 3.55
733 734 2.436115 GGACCACTAGGCAACCGC 60.436 66.667 0.00 0.00 39.06 5.68
756 758 2.742589 CAACTACCTTCCTTTTCGAGGC 59.257 50.000 0.00 0.00 45.87 4.70
759 761 4.131596 CCAACAACTACCTTCCTTTTCGA 58.868 43.478 0.00 0.00 0.00 3.71
766 768 1.269723 GCAAGCCAACAACTACCTTCC 59.730 52.381 0.00 0.00 0.00 3.46
812 814 1.534729 GTCCAAAGCCCAAGGTACTG 58.465 55.000 0.00 0.00 40.86 2.74
815 817 0.475044 AACGTCCAAAGCCCAAGGTA 59.525 50.000 0.00 0.00 0.00 3.08
816 818 0.822121 GAACGTCCAAAGCCCAAGGT 60.822 55.000 0.00 0.00 0.00 3.50
817 819 1.524008 GGAACGTCCAAAGCCCAAGG 61.524 60.000 0.00 0.00 36.28 3.61
818 820 0.821711 TGGAACGTCCAAAGCCCAAG 60.822 55.000 4.51 0.00 45.00 3.61
819 821 1.227664 TGGAACGTCCAAAGCCCAA 59.772 52.632 4.51 0.00 45.00 4.12
820 822 2.919839 TGGAACGTCCAAAGCCCA 59.080 55.556 4.51 0.00 45.00 5.36
830 850 2.283529 ACCCGATCTGCTGGAACGT 61.284 57.895 8.43 0.00 38.32 3.99
846 866 1.202580 CCCAGATGATTCGAGACCACC 60.203 57.143 0.00 0.00 0.00 4.61
863 883 1.658994 GAACACGTTCACAAGACCCA 58.341 50.000 5.05 0.00 39.31 4.51
869 889 1.133407 CCGATCGAACACGTTCACAA 58.867 50.000 18.66 0.00 39.46 3.33
870 890 0.031043 ACCGATCGAACACGTTCACA 59.969 50.000 18.66 0.00 39.46 3.58
871 891 0.706729 GACCGATCGAACACGTTCAC 59.293 55.000 18.66 0.92 39.46 3.18
872 892 0.594602 AGACCGATCGAACACGTTCA 59.405 50.000 18.66 0.00 39.46 3.18
873 893 1.385743 CAAGACCGATCGAACACGTTC 59.614 52.381 18.66 0.00 36.29 3.95
874 894 1.269413 ACAAGACCGATCGAACACGTT 60.269 47.619 18.66 0.00 0.00 3.99
875 895 0.313043 ACAAGACCGATCGAACACGT 59.687 50.000 18.66 5.00 0.00 4.49
909 929 2.029073 ACGACAACGCCTGTGAGG 59.971 61.111 0.00 0.00 43.96 3.86
928 948 0.955919 GGGAGCGGAGACAAAAGTGG 60.956 60.000 0.00 0.00 0.00 4.00
1010 1040 2.319011 CTAGCTACCTTCGTGCGCGA 62.319 60.000 20.10 20.10 46.36 5.87
1011 1041 1.939785 CTAGCTACCTTCGTGCGCG 60.940 63.158 14.79 14.79 39.92 6.86
1042 1072 1.669779 GACTGATGTGCTGATGGCTTC 59.330 52.381 0.00 0.00 42.39 3.86
1137 1176 1.372087 CTTCTGCTCCGAACCCATGC 61.372 60.000 0.00 0.00 0.00 4.06
1138 1177 1.372087 GCTTCTGCTCCGAACCCATG 61.372 60.000 0.00 0.00 36.03 3.66
1712 1787 2.124695 GAAGGTCGGCATGTCCCC 60.125 66.667 0.00 0.00 0.00 4.81
1885 1960 2.363018 CTGGAGAGAGGGCCGACA 60.363 66.667 0.00 0.00 0.00 4.35
2302 2377 1.006571 GTTGGTCGTCTGCTCGGAA 60.007 57.895 0.00 0.00 0.00 4.30
2420 2495 1.474143 CCTCGCCTCAATTCCCTTCTC 60.474 57.143 0.00 0.00 0.00 2.87
2421 2496 0.543749 CCTCGCCTCAATTCCCTTCT 59.456 55.000 0.00 0.00 0.00 2.85
2428 2503 1.208293 GTCTTCTCCCTCGCCTCAATT 59.792 52.381 0.00 0.00 0.00 2.32
2431 2506 2.046864 CGTCTTCTCCCTCGCCTCA 61.047 63.158 0.00 0.00 0.00 3.86
2602 2679 4.770795 ACTGACTTGTGCTACTTCACTTT 58.229 39.130 0.00 0.00 37.81 2.66
2610 2687 3.849911 TCATGCTACTGACTTGTGCTAC 58.150 45.455 0.00 0.00 0.00 3.58
2665 2750 9.603921 AAAAATGAAGCTCAATTTCTCTTCAAA 57.396 25.926 13.64 0.00 45.20 2.69
2738 2823 2.092212 ACTGATCAACCCCATTAGCCAG 60.092 50.000 0.00 0.00 0.00 4.85
2788 2873 1.133730 TGGCACGGTAGGGTTTCTTTT 60.134 47.619 0.00 0.00 0.00 2.27
2845 2930 4.560128 CTCTCGTGGAAGTTGATCTTGAA 58.440 43.478 0.00 0.00 36.40 2.69
2872 2957 4.447138 TGGCCTTTCCAAAGTAGAAGAA 57.553 40.909 3.32 0.00 43.21 2.52
3032 3122 5.250200 TCGCTTACTAATTCAACAACCCAT 58.750 37.500 0.00 0.00 0.00 4.00
3292 3401 7.758076 TGAGTACCTTGTATAGTCATTTTGTCG 59.242 37.037 0.00 0.00 28.98 4.35
3302 3411 6.075949 TCCTCAGTGAGTACCTTGTATAGT 57.924 41.667 18.74 0.00 0.00 2.12
3312 3421 0.966370 ACGCCCTCCTCAGTGAGTAC 60.966 60.000 18.74 2.74 0.00 2.73
3317 3426 0.824109 TGATAACGCCCTCCTCAGTG 59.176 55.000 0.00 0.00 0.00 3.66
3422 3535 1.923356 TTTCTTTCTGGACCCCATGC 58.077 50.000 0.00 0.00 30.82 4.06
3434 3547 5.562890 CGTCCCTGAGTGGAAAATTTCTTTC 60.563 44.000 5.65 2.48 35.80 2.62
3441 3554 2.158667 ACAACGTCCCTGAGTGGAAAAT 60.159 45.455 0.00 0.00 35.80 1.82
3446 3559 0.966920 ACTACAACGTCCCTGAGTGG 59.033 55.000 0.00 0.00 0.00 4.00
3448 3563 2.444421 CCTACTACAACGTCCCTGAGT 58.556 52.381 0.00 0.00 0.00 3.41
3451 3567 0.892755 TGCCTACTACAACGTCCCTG 59.107 55.000 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.