AutoCloner

Multiple sequence alignment - TraesCS5D01G263800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G263800	chr5D	100.000	2687	0	0	1	2687	369075752	369078438	0.000000e+00	4963.0
1	TraesCS5D01G263800	chr5D	92.154	1249	64	21	415	1646	369061736	369060505	0.000000e+00	1733.0
2	TraesCS5D01G263800	chr5D	97.063	749	19	3	1941	2687	520118906	520118159	0.000000e+00	1258.0
3	TraesCS5D01G263800	chr5D	78.683	319	45	12	40	346	369063520	369063213	9.820000e-45	191.0
4	TraesCS5D01G263800	chr5A	92.140	1603	79	13	376	1941	471464112	471462520	0.000000e+00	2218.0
5	TraesCS5D01G263800	chr5A	90.531	1394	82	21	291	1646	471511174	471512555	0.000000e+00	1797.0
6	TraesCS5D01G263800	chr5A	85.417	288	23	4	91	370	471479691	471479967	5.660000e-72	281.0
7	TraesCS5D01G263800	chr5A	93.182	44	2	1	1898	1941	26452647	26452605	2.230000e-06	63.9
8	TraesCS5D01G263800	chr5B	94.624	1395	47	7	267	1646	437571681	437573062	0.000000e+00	2135.0
9	TraesCS5D01G263800	chr5B	94.741	1236	58	3	415	1644	437807236	437808470	0.000000e+00	1916.0
10	TraesCS5D01G263800	chr5B	92.080	1250	71	19	415	1646	437538295	437537056	0.000000e+00	1735.0
11	TraesCS5D01G263800	chr5B	91.673	1249	71	19	415	1646	437305783	437304551	0.000000e+00	1700.0
12	TraesCS5D01G263800	chr5B	91.426	1248	80	19	415	1646	437368293	437367057	0.000000e+00	1687.0
13	TraesCS5D01G263800	chr5B	93.432	1081	64	3	571	1646	437601260	437602338	0.000000e+00	1596.0
14	TraesCS5D01G263800	chr5B	94.702	453	22	2	43	494	437595616	437596067	0.000000e+00	702.0
15	TraesCS5D01G263800	chr5B	97.059	102	3	0	182	283	437571565	437571666	3.560000e-39	172.0
16	TraesCS5D01G263800	chr5B	97.368	38	1	0	1904	1941	74439179	74439142	6.210000e-07	65.8
17	TraesCS5D01G263800	chr3D	97.204	751	15	6	1941	2687	540219628	540218880	0.000000e+00	1266.0
18	TraesCS5D01G263800	chr3D	96.933	750	17	5	1941	2687	487595235	487595981	0.000000e+00	1253.0
19	TraesCS5D01G263800	chr3D	96.804	751	17	6	1941	2687	213961519	213962266	0.000000e+00	1247.0
20	TraesCS5D01G263800	chr3D	96.662	749	21	4	1941	2687	248466084	248465338	0.000000e+00	1242.0
21	TraesCS5D01G263800	chr6D	97.200	750	15	5	1941	2687	438375152	438374406	0.000000e+00	1264.0
22	TraesCS5D01G263800	chr6D	96.671	751	20	4	1941	2687	438380714	438379965	0.000000e+00	1243.0
23	TraesCS5D01G263800	chr6D	96.662	749	21	4	1941	2687	245213265	245212519	0.000000e+00	1242.0
24	TraesCS5D01G263800	chr1D	96.933	750	18	5	1941	2687	9706468	9705721	0.000000e+00	1253.0
25	TraesCS5D01G263800	chr1D	92.500	40	2	1	1849	1887	200335523	200335562	3.740000e-04	56.5
26	TraesCS5D01G263800	chr1B	95.238	42	2	0	1900	1941	231661995	231661954	1.730000e-07	67.6
27	TraesCS5D01G263800	chr7D	95.122	41	2	0	1901	1941	580714197	580714237	6.210000e-07	65.8
28	TraesCS5D01G263800	chr6A	97.368	38	1	0	1904	1941	255196393	255196356	6.210000e-07	65.8
29	TraesCS5D01G263800	chr4D	95.122	41	2	0	1901	1941	7925030	7924990	6.210000e-07	65.8
30	TraesCS5D01G263800	chr2B	95.122	41	2	0	1901	1941	381502910	381502950	6.210000e-07	65.8
31	TraesCS5D01G263800	chr2A	97.368	38	1	0	1904	1941	654555219	654555256	6.210000e-07	65.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G263800	chr5D	369075752	369078438	2686	False	4963.0	4963	100.0000	1	2687	1	chr5D.!!$F1	2686
1	TraesCS5D01G263800	chr5D	520118159	520118906	747	True	1258.0	1258	97.0630	1941	2687	1	chr5D.!!$R1	746
2	TraesCS5D01G263800	chr5D	369060505	369063520	3015	True	962.0	1733	85.4185	40	1646	2	chr5D.!!$R2	1606
3	TraesCS5D01G263800	chr5A	471462520	471464112	1592	True	2218.0	2218	92.1400	376	1941	1	chr5A.!!$R2	1565
4	TraesCS5D01G263800	chr5A	471511174	471512555	1381	False	1797.0	1797	90.5310	291	1646	1	chr5A.!!$F2	1355
5	TraesCS5D01G263800	chr5B	437807236	437808470	1234	False	1916.0	1916	94.7410	415	1644	1	chr5B.!!$F3	1229
6	TraesCS5D01G263800	chr5B	437537056	437538295	1239	True	1735.0	1735	92.0800	415	1646	1	chr5B.!!$R4	1231
7	TraesCS5D01G263800	chr5B	437304551	437305783	1232	True	1700.0	1700	91.6730	415	1646	1	chr5B.!!$R2	1231
8	TraesCS5D01G263800	chr5B	437367057	437368293	1236	True	1687.0	1687	91.4260	415	1646	1	chr5B.!!$R3	1231
9	TraesCS5D01G263800	chr5B	437601260	437602338	1078	False	1596.0	1596	93.4320	571	1646	1	chr5B.!!$F2	1075
10	TraesCS5D01G263800	chr5B	437571565	437573062	1497	False	1153.5	2135	95.8415	182	1646	2	chr5B.!!$F4	1464
11	TraesCS5D01G263800	chr3D	540218880	540219628	748	True	1266.0	1266	97.2040	1941	2687	1	chr3D.!!$R2	746
12	TraesCS5D01G263800	chr3D	487595235	487595981	746	False	1253.0	1253	96.9330	1941	2687	1	chr3D.!!$F2	746
13	TraesCS5D01G263800	chr3D	213961519	213962266	747	False	1247.0	1247	96.8040	1941	2687	1	chr3D.!!$F1	746
14	TraesCS5D01G263800	chr3D	248465338	248466084	746	True	1242.0	1242	96.6620	1941	2687	1	chr3D.!!$R1	746
15	TraesCS5D01G263800	chr6D	438374406	438375152	746	True	1264.0	1264	97.2000	1941	2687	1	chr6D.!!$R2	746
16	TraesCS5D01G263800	chr6D	438379965	438380714	749	True	1243.0	1243	96.6710	1941	2687	1	chr6D.!!$R3	746
17	TraesCS5D01G263800	chr6D	245212519	245213265	746	True	1242.0	1242	96.6620	1941	2687	1	chr6D.!!$R1	746
18	TraesCS5D01G263800	chr1D	9705721	9706468	747	True	1253.0	1253	96.9330	1941	2687	1	chr1D.!!$R1	746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
37	38	0.252284	TTGTTTTGTGTGGTGGGGGT	60.252	50.0	0.0	0.0	0.0	4.95	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1777	3299	0.538287	GAGGAAGCCAGCCAACACTT	60.538	55.0	0.0	0.0	0.0	3.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	25	7.472334	AAGATGAATGGTAGCAGATTGTTTT	57.528	32.000	0.00	0.00	0.00	2.43
25	26	6.860080	AGATGAATGGTAGCAGATTGTTTTG	58.140	36.000	0.00	0.00	0.00	2.44
26	27	6.435277	AGATGAATGGTAGCAGATTGTTTTGT	59.565	34.615	0.00	0.00	0.00	2.83
27	28	5.771469	TGAATGGTAGCAGATTGTTTTGTG	58.229	37.500	0.00	0.00	0.00	3.33
28	29	5.301551	TGAATGGTAGCAGATTGTTTTGTGT	59.698	36.000	0.00	0.00	0.00	3.72
29	30	4.566545	TGGTAGCAGATTGTTTTGTGTG	57.433	40.909	0.00	0.00	0.00	3.82
30	31	3.317711	TGGTAGCAGATTGTTTTGTGTGG	59.682	43.478	0.00	0.00	0.00	4.17
31	32	3.317993	GGTAGCAGATTGTTTTGTGTGGT	59.682	43.478	0.00	0.00	0.00	4.16
32	33	3.441496	AGCAGATTGTTTTGTGTGGTG	57.559	42.857	0.00	0.00	0.00	4.17
33	34	2.101249	AGCAGATTGTTTTGTGTGGTGG	59.899	45.455	0.00	0.00	0.00	4.61
34	35	2.802774	GCAGATTGTTTTGTGTGGTGGG	60.803	50.000	0.00	0.00	0.00	4.61
35	36	2.038659	AGATTGTTTTGTGTGGTGGGG	58.961	47.619	0.00	0.00	0.00	4.96
36	37	1.069978	GATTGTTTTGTGTGGTGGGGG	59.930	52.381	0.00	0.00	0.00	5.40
37	38	0.252284	TTGTTTTGTGTGGTGGGGGT	60.252	50.000	0.00	0.00	0.00	4.95
38	39	0.252284	TGTTTTGTGTGGTGGGGGTT	60.252	50.000	0.00	0.00	0.00	4.11
47	48	0.831288	TGGTGGGGGTTGCAATTCTG	60.831	55.000	0.59	0.00	0.00	3.02
71	72	2.025898	TGCACGGATCCAACGTCTATA	58.974	47.619	13.41	0.00	43.58	1.31
73	74	2.662700	CACGGATCCAACGTCTATAGC	58.337	52.381	13.41	0.00	43.58	2.97
80	81	3.782046	TCCAACGTCTATAGCTGCTTTC	58.218	45.455	7.79	0.00	0.00	2.62
84	85	4.927978	ACGTCTATAGCTGCTTTCAGAT	57.072	40.909	7.79	0.00	42.95	2.90
87	88	5.068460	ACGTCTATAGCTGCTTTCAGATTCT	59.932	40.000	7.79	0.00	42.95	2.40
92	93	3.947868	AGCTGCTTTCAGATTCTTGCTA	58.052	40.909	0.00	0.00	42.95	3.49
94	95	3.438087	GCTGCTTTCAGATTCTTGCTACA	59.562	43.478	0.00	0.00	42.95	2.74
141	143	6.604735	ATCTGGTTTCATAGCGTTACATTC	57.395	37.500	0.00	0.00	0.00	2.67
142	144	4.565166	TCTGGTTTCATAGCGTTACATTCG	59.435	41.667	0.00	0.00	0.00	3.34
143	145	3.619483	TGGTTTCATAGCGTTACATTCGG	59.381	43.478	0.00	0.00	0.00	4.30
144	146	3.619929	GGTTTCATAGCGTTACATTCGGT	59.380	43.478	0.00	0.00	41.68	4.69
154	156	4.844522	GCGTTACATTCGGTTTTTCTTCTC	59.155	41.667	0.00	0.00	0.00	2.87
167	169	6.183360	GGTTTTTCTTCTCGTTCCAAAGTGTA	60.183	38.462	0.00	0.00	0.00	2.90
168	170	5.978934	TTTCTTCTCGTTCCAAAGTGTAC	57.021	39.130	0.00	0.00	0.00	2.90
173	175	6.866770	TCTTCTCGTTCCAAAGTGTACATTAG	59.133	38.462	0.00	0.00	0.00	1.73
216	218	5.681105	CGTGCATATTAAAACCGATCCAAAG	59.319	40.000	0.00	0.00	0.00	2.77
408	1835	1.404035	GTGACCGCAGTTCCTTTGTTT	59.596	47.619	0.00	0.00	0.00	2.83
461	1908	1.880894	CTCCCGTTACAGTCTCGCA	59.119	57.895	0.00	0.00	0.00	5.10
467	1914	1.784525	GTTACAGTCTCGCACAAGCT	58.215	50.000	0.00	0.00	39.10	3.74
505	1970	1.337823	CGTTGAATCCGAGGACCAGTT	60.338	52.381	0.00	0.00	0.00	3.16
507	1972	1.348064	TGAATCCGAGGACCAGTTGT	58.652	50.000	0.00	0.00	0.00	3.32
537	2002	1.078918	TGACGCTGAGCATCCCAAG	60.079	57.895	4.88	0.00	0.00	3.61
978	2500	2.492090	CTCTCGCTCGACCCCTTG	59.508	66.667	0.00	0.00	0.00	3.61
1191	2713	2.435586	GCAGACGGCATCAGCACT	60.436	61.111	0.00	0.00	44.61	4.40
1456	2978	1.685765	ACGATCTGGCCAGCCTACA	60.686	57.895	28.91	11.08	36.94	2.74
1461	2983	1.078143	CTGGCCAGCCTACAAGTCC	60.078	63.158	22.33	0.00	36.94	3.85
1653	3175	1.716826	GGTTCGCCAACGTCACCAAA	61.717	55.000	0.00	0.00	40.95	3.28
1669	3191	5.342259	GTCACCAAAGATTTGTATTGCGTTC	59.658	40.000	4.71	0.00	36.45	3.95
1688	3210	4.171005	GTTCATCACAAATGTGCATGAGG	58.829	43.478	18.81	0.00	45.25	3.86
1695	3217	5.942826	TCACAAATGTGCATGAGGTTGTATA	59.057	36.000	8.67	0.00	45.25	1.47
1703	3225	5.532406	GTGCATGAGGTTGTATATTGGTCAT	59.468	40.000	0.00	0.00	0.00	3.06
1756	3278	7.192913	TGCAAGAACATAAAACTACAACTGTG	58.807	34.615	0.00	0.00	0.00	3.66
1777	3299	3.577848	TGGGCGTCCTAAACACTACTAAA	59.422	43.478	7.97	0.00	0.00	1.85
1778	3300	4.040217	TGGGCGTCCTAAACACTACTAAAA	59.960	41.667	7.97	0.00	0.00	1.52
1790	3312	3.058224	CACTACTAAAAGTGTTGGCTGGC	60.058	47.826	0.00	0.00	41.63	4.85
1846	3368	0.679640	TGAACGATGGATTGGTGGCC	60.680	55.000	0.00	0.00	0.00	5.36
1847	3369	0.679640	GAACGATGGATTGGTGGCCA	60.680	55.000	0.00	0.00	38.78	5.36
1908	3431	4.506886	CCAGTCCTGGTCGAATATACTC	57.493	50.000	5.11	0.00	45.53	2.59
1910	3433	3.256136	CAGTCCTGGTCGAATATACTCCC	59.744	52.174	0.00	0.00	0.00	4.30
1930	3453	6.117975	TCCCTCCGTTTTTATTTACTCTGT	57.882	37.500	0.00	0.00	0.00	3.41
2022	3545	0.466124	ATCTAGCAACGAGGGGAAGC	59.534	55.000	0.00	0.00	0.00	3.86
2235	3758	1.192803	GGTTGGGGAAGACTCCGTCT	61.193	60.000	0.00	0.00	45.64	4.18
2305	3828	3.430862	GCTTCGCCAATCACCGCA	61.431	61.111	0.00	0.00	0.00	5.69
2421	3947	3.913107	GGCTGCTCCCCCATCTAT	58.087	61.111	0.00	0.00	0.00	1.98

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	7.039504	ACAAAACAATCTGCTACCATTCATCTT	60.040	33.333	0.00	0.00	0.00	2.40
1	2	6.435277	ACAAAACAATCTGCTACCATTCATCT	59.565	34.615	0.00	0.00	0.00	2.90
2	3	6.529125	CACAAAACAATCTGCTACCATTCATC	59.471	38.462	0.00	0.00	0.00	2.92
3	4	6.015180	ACACAAAACAATCTGCTACCATTCAT	60.015	34.615	0.00	0.00	0.00	2.57
4	5	5.301551	ACACAAAACAATCTGCTACCATTCA	59.698	36.000	0.00	0.00	0.00	2.57
5	6	5.630680	CACACAAAACAATCTGCTACCATTC	59.369	40.000	0.00	0.00	0.00	2.67
6	7	5.509501	CCACACAAAACAATCTGCTACCATT	60.510	40.000	0.00	0.00	0.00	3.16
7	8	4.022068	CCACACAAAACAATCTGCTACCAT	60.022	41.667	0.00	0.00	0.00	3.55
8	9	3.317711	CCACACAAAACAATCTGCTACCA	59.682	43.478	0.00	0.00	0.00	3.25
9	10	3.317993	ACCACACAAAACAATCTGCTACC	59.682	43.478	0.00	0.00	0.00	3.18
10	11	4.290155	CACCACACAAAACAATCTGCTAC	58.710	43.478	0.00	0.00	0.00	3.58
11	12	3.317711	CCACCACACAAAACAATCTGCTA	59.682	43.478	0.00	0.00	0.00	3.49
12	13	2.101249	CCACCACACAAAACAATCTGCT	59.899	45.455	0.00	0.00	0.00	4.24
13	14	2.472816	CCACCACACAAAACAATCTGC	58.527	47.619	0.00	0.00	0.00	4.26
14	15	2.224018	CCCCACCACACAAAACAATCTG	60.224	50.000	0.00	0.00	0.00	2.90
15	16	2.038659	CCCCACCACACAAAACAATCT	58.961	47.619	0.00	0.00	0.00	2.40
16	17	1.069978	CCCCCACCACACAAAACAATC	59.930	52.381	0.00	0.00	0.00	2.67
17	18	1.127343	CCCCCACCACACAAAACAAT	58.873	50.000	0.00	0.00	0.00	2.71
18	19	0.252284	ACCCCCACCACACAAAACAA	60.252	50.000	0.00	0.00	0.00	2.83
19	20	0.252284	AACCCCCACCACACAAAACA	60.252	50.000	0.00	0.00	0.00	2.83
20	21	0.176910	CAACCCCCACCACACAAAAC	59.823	55.000	0.00	0.00	0.00	2.43
21	22	1.617947	GCAACCCCCACCACACAAAA	61.618	55.000	0.00	0.00	0.00	2.44
22	23	2.060980	GCAACCCCCACCACACAAA	61.061	57.895	0.00	0.00	0.00	2.83
23	24	2.443016	GCAACCCCCACCACACAA	60.443	61.111	0.00	0.00	0.00	3.33
24	25	2.595954	ATTGCAACCCCCACCACACA	62.596	55.000	0.00	0.00	0.00	3.72
25	26	1.406860	AATTGCAACCCCCACCACAC	61.407	55.000	0.00	0.00	0.00	3.82
26	27	1.074926	AATTGCAACCCCCACCACA	60.075	52.632	0.00	0.00	0.00	4.17
27	28	0.831711	AGAATTGCAACCCCCACCAC	60.832	55.000	0.00	0.00	0.00	4.16
28	29	0.831288	CAGAATTGCAACCCCCACCA	60.831	55.000	0.00	0.00	0.00	4.17
29	30	1.974543	CAGAATTGCAACCCCCACC	59.025	57.895	0.00	0.00	0.00	4.61
50	51	0.108992	TAGACGTTGGATCCGTGCAC	60.109	55.000	6.82	6.82	38.92	4.57
63	64	4.927978	ATCTGAAAGCAGCTATAGACGT	57.072	40.909	3.21	0.00	42.01	4.34
65	66	6.292811	GCAAGAATCTGAAAGCAGCTATAGAC	60.293	42.308	3.21	0.00	42.01	2.59
71	72	2.792878	AGCAAGAATCTGAAAGCAGCT	58.207	42.857	0.00	0.00	42.01	4.24
73	74	5.814764	ATGTAGCAAGAATCTGAAAGCAG	57.185	39.130	0.00	0.00	43.67	4.24
118	120	5.234329	CGAATGTAACGCTATGAAACCAGAT	59.766	40.000	0.00	0.00	0.00	2.90
121	123	3.619483	CCGAATGTAACGCTATGAAACCA	59.381	43.478	0.00	0.00	0.00	3.67
122	124	3.619929	ACCGAATGTAACGCTATGAAACC	59.380	43.478	0.00	0.00	0.00	3.27
129	131	5.697633	AGAAGAAAAACCGAATGTAACGCTA	59.302	36.000	0.00	0.00	0.00	4.26
141	143	3.955771	TTGGAACGAGAAGAAAAACCG	57.044	42.857	0.00	0.00	0.00	4.44
142	144	5.034797	CACTTTGGAACGAGAAGAAAAACC	58.965	41.667	0.00	0.00	0.00	3.27
143	145	5.637809	ACACTTTGGAACGAGAAGAAAAAC	58.362	37.500	0.00	0.00	0.00	2.43
144	146	5.890424	ACACTTTGGAACGAGAAGAAAAA	57.110	34.783	0.00	0.00	0.00	1.94
154	156	5.694910	AGACACTAATGTACACTTTGGAACG	59.305	40.000	0.00	0.00	39.95	3.95
167	169	9.989869	CGATAATATACGATGAGACACTAATGT	57.010	33.333	0.00	0.00	43.71	2.71
168	170	9.989869	ACGATAATATACGATGAGACACTAATG	57.010	33.333	0.00	0.00	0.00	1.90
173	175	6.084277	TGCACGATAATATACGATGAGACAC	58.916	40.000	0.00	0.00	0.00	3.67
315	348	7.119992	TGGTTGCTTTAAGATTCACGCTAATTA	59.880	33.333	0.00	0.00	0.00	1.40
505	1970	2.354656	GTCAGCGAGACGTGCACA	60.355	61.111	18.64	0.00	37.53	4.57
537	2002	3.000727	GTGGCGGTGGTATATATTGAGC	58.999	50.000	0.00	0.00	0.00	4.26
984	2506	2.507102	ATCACGACGGCGAGCTTG	60.507	61.111	22.49	4.73	41.64	4.01
991	2513	3.188786	GCACTCCATCACGACGGC	61.189	66.667	0.00	0.00	0.00	5.68
1623	3145	2.746277	GCGAACCATGGTCGCCTT	60.746	61.111	33.20	16.11	45.77	4.35
1647	3169	5.218885	TGAACGCAATACAAATCTTTGGTG	58.781	37.500	7.51	3.97	42.34	4.17
1653	3175	5.878332	TGTGATGAACGCAATACAAATCT	57.122	34.783	0.00	0.00	35.99	2.40
1688	3210	6.316140	TGCTCTTCACATGACCAATATACAAC	59.684	38.462	0.00	0.00	0.00	3.32
1716	3238	5.049474	TGTTCTTGCAACAAGCTATACACTG	60.049	40.000	0.00	0.00	45.94	3.66
1717	3239	5.063204	TGTTCTTGCAACAAGCTATACACT	58.937	37.500	0.00	0.00	45.94	3.55
1756	3278	3.874392	TTAGTAGTGTTTAGGACGCCC	57.126	47.619	0.00	0.00	39.64	6.13
1777	3299	0.538287	GAGGAAGCCAGCCAACACTT	60.538	55.000	0.00	0.00	0.00	3.16
1778	3300	1.073897	GAGGAAGCCAGCCAACACT	59.926	57.895	0.00	0.00	0.00	3.55
1846	3368	1.136252	GCAGTCACGCTGTAACATGTG	60.136	52.381	0.00	0.00	46.64	3.21
1847	3369	1.148310	GCAGTCACGCTGTAACATGT	58.852	50.000	0.00	0.00	46.64	3.21
1896	3419	4.581077	AAACGGAGGGAGTATATTCGAC	57.419	45.455	0.00	0.00	0.00	4.20
1908	3431	6.875195	TGTACAGAGTAAATAAAAACGGAGGG	59.125	38.462	0.00	0.00	0.00	4.30
1930	3453	5.726980	ACGTTACCCAACACTCTAATGTA	57.273	39.130	0.00	0.00	34.05	2.29
2022	3545	1.964223	AGGGTATGTAGATGCACTCCG	59.036	52.381	0.00	0.00	0.00	4.63
2235	3758	3.049674	GCCGTTGTGCTGCTGCTA	61.050	61.111	17.00	3.17	40.48	3.49
2298	3821	1.587043	CTCCTCGTCTCTTGCGGTGA	61.587	60.000	0.00	0.00	0.00	4.02
2305	3828	0.257616	CCTCTCCCTCCTCGTCTCTT	59.742	60.000	0.00	0.00	0.00	2.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.