Multiple sequence alignment - TraesCS5D01G263200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G263200 chr5D 100.000 3260 0 0 1 3260 369017169 369013910 0.000000e+00 6021.0
1 TraesCS5D01G263200 chr5D 91.042 1842 94 33 1456 3260 557815924 557817731 0.000000e+00 2422.0
2 TraesCS5D01G263200 chr5D 82.993 147 20 5 187 332 40431329 40431471 9.490000e-26 128.0
3 TraesCS5D01G263200 chr5D 86.842 114 13 2 220 332 261301796 261301684 3.410000e-25 126.0
4 TraesCS5D01G263200 chr4D 93.694 2886 113 22 436 3260 46605929 46608806 0.000000e+00 4257.0
5 TraesCS5D01G263200 chr4D 93.678 1835 78 16 428 2236 346267996 346266174 0.000000e+00 2712.0
6 TraesCS5D01G263200 chr4D 93.582 1823 81 14 438 2236 346232521 346230711 0.000000e+00 2686.0
7 TraesCS5D01G263200 chr4D 87.798 2057 132 66 1213 3216 440464693 440462703 0.000000e+00 2298.0
8 TraesCS5D01G263200 chr4D 94.701 1038 49 2 1515 2550 43370786 43371819 0.000000e+00 1607.0
9 TraesCS5D01G263200 chr4D 94.439 989 49 4 2232 3216 346226242 346225256 0.000000e+00 1517.0
10 TraesCS5D01G263200 chr4D 97.309 223 6 0 1 223 416710775 416710553 2.370000e-101 379.0
11 TraesCS5D01G263200 chr4D 92.233 206 13 3 1308 1512 43370614 43370817 4.120000e-74 289.0
12 TraesCS5D01G263200 chr4D 87.611 113 12 2 221 332 300564101 300564212 2.640000e-26 130.0
13 TraesCS5D01G263200 chr4D 94.366 71 4 0 3190 3260 346225252 346225182 3.440000e-20 110.0
14 TraesCS5D01G263200 chr2D 93.363 2260 94 16 438 2691 585733051 585730842 0.000000e+00 3291.0
15 TraesCS5D01G263200 chr2D 92.067 1248 75 17 1456 2692 103016806 103015572 0.000000e+00 1735.0
16 TraesCS5D01G263200 chr2D 89.788 1038 69 16 438 1470 103017838 103016833 0.000000e+00 1295.0
17 TraesCS5D01G263200 chr2D 86.053 674 43 23 2636 3260 585730829 585730158 0.000000e+00 676.0
18 TraesCS5D01G263200 chr2D 94.737 38 2 0 186 223 114726373 114726336 3.510000e-05 60.2
19 TraesCS5D01G263200 chr1D 91.889 1726 78 20 438 2148 422072812 422074490 0.000000e+00 2355.0
20 TraesCS5D01G263200 chr1D 92.208 154 11 1 2636 2789 422097215 422097367 1.970000e-52 217.0
21 TraesCS5D01G263200 chr1D 86.726 113 13 2 221 332 223035968 223036079 1.230000e-24 124.0
22 TraesCS5D01G263200 chr7D 87.818 2044 134 55 1213 3216 11642996 11644964 0.000000e+00 2289.0
23 TraesCS5D01G263200 chr7D 85.025 1182 95 27 438 1581 498405590 498406727 0.000000e+00 1127.0
24 TraesCS5D01G263200 chr7D 85.994 664 52 25 2636 3260 192455524 192454863 0.000000e+00 673.0
25 TraesCS5D01G263200 chr3B 88.352 1614 116 40 1698 3260 85165159 85163567 0.000000e+00 1873.0
26 TraesCS5D01G263200 chr3B 89.079 1346 108 19 1213 2556 813213627 813212319 0.000000e+00 1635.0
27 TraesCS5D01G263200 chr3B 90.036 823 48 20 866 1686 635270660 635271450 0.000000e+00 1035.0
28 TraesCS5D01G263200 chr3B 88.791 794 77 9 438 1222 85166156 85165366 0.000000e+00 963.0
29 TraesCS5D01G263200 chr3B 94.737 57 2 1 2672 2728 85164086 85164031 1.610000e-13 87.9
30 TraesCS5D01G263200 chr4B 87.823 1626 117 40 1698 3260 531106784 531108391 0.000000e+00 1831.0
31 TraesCS5D01G263200 chr4B 100.000 31 0 0 2737 2767 611645551 611645521 1.260000e-04 58.4
32 TraesCS5D01G263200 chr3D 95.208 1106 43 6 1456 2556 603109152 603108052 0.000000e+00 1740.0
33 TraesCS5D01G263200 chr3D 90.144 1319 73 28 1967 3260 550291138 550289852 0.000000e+00 1663.0
34 TraesCS5D01G263200 chr3D 89.001 1091 57 12 438 1524 603110169 603109138 0.000000e+00 1291.0
35 TraesCS5D01G263200 chr3D 89.257 996 59 16 484 1468 550303361 550302403 0.000000e+00 1203.0
36 TraesCS5D01G263200 chr3D 81.236 453 46 21 2843 3260 580650207 580649759 2.420000e-86 329.0
37 TraesCS5D01G263200 chr3D 93.636 110 7 0 221 330 347625269 347625378 7.240000e-37 165.0
38 TraesCS5D01G263200 chr7A 86.756 1495 112 42 1299 2732 110524583 110526052 0.000000e+00 1585.0
39 TraesCS5D01G263200 chr7A 75.000 164 31 7 64 222 717920942 717920784 2.100000e-07 67.6
40 TraesCS5D01G263200 chr2A 84.366 1727 126 64 1300 2982 14784493 14786119 0.000000e+00 1561.0
41 TraesCS5D01G263200 chr1B 85.976 1091 109 23 436 1516 229996891 229997947 0.000000e+00 1127.0
42 TraesCS5D01G263200 chr1B 81.250 208 27 11 18 219 480986192 480986393 1.210000e-34 158.0
43 TraesCS5D01G263200 chr3A 82.837 571 59 26 2670 3216 674546844 674546289 2.940000e-130 475.0
44 TraesCS5D01G263200 chr3A 86.697 436 39 7 2790 3216 64314827 64314402 1.770000e-127 466.0
45 TraesCS5D01G263200 chr6D 95.200 250 11 1 438 686 439666063 439665814 8.480000e-106 394.0
46 TraesCS5D01G263200 chr6D 86.726 113 13 2 221 332 285444841 285444730 1.230000e-24 124.0
47 TraesCS5D01G263200 chr6D 86.726 113 13 2 221 332 393594521 393594410 1.230000e-24 124.0
48 TraesCS5D01G263200 chr2B 85.333 150 21 1 9 158 16845285 16845433 1.570000e-33 154.0
49 TraesCS5D01G263200 chr6B 82.877 146 21 4 188 332 634285316 634285174 9.490000e-26 128.0
50 TraesCS5D01G263200 chr5A 84.615 130 16 4 204 332 377658507 377658381 3.410000e-25 126.0
51 TraesCS5D01G263200 chr5B 74.211 190 37 8 41 223 240330015 240330199 5.840000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G263200 chr5D 369013910 369017169 3259 True 6021.000000 6021 100.000000 1 3260 1 chr5D.!!$R2 3259
1 TraesCS5D01G263200 chr5D 557815924 557817731 1807 False 2422.000000 2422 91.042000 1456 3260 1 chr5D.!!$F2 1804
2 TraesCS5D01G263200 chr4D 46605929 46608806 2877 False 4257.000000 4257 93.694000 436 3260 1 chr4D.!!$F1 2824
3 TraesCS5D01G263200 chr4D 346266174 346267996 1822 True 2712.000000 2712 93.678000 428 2236 1 chr4D.!!$R2 1808
4 TraesCS5D01G263200 chr4D 346230711 346232521 1810 True 2686.000000 2686 93.582000 438 2236 1 chr4D.!!$R1 1798
5 TraesCS5D01G263200 chr4D 440462703 440464693 1990 True 2298.000000 2298 87.798000 1213 3216 1 chr4D.!!$R4 2003
6 TraesCS5D01G263200 chr4D 43370614 43371819 1205 False 948.000000 1607 93.467000 1308 2550 2 chr4D.!!$F3 1242
7 TraesCS5D01G263200 chr4D 346225182 346226242 1060 True 813.500000 1517 94.402500 2232 3260 2 chr4D.!!$R5 1028
8 TraesCS5D01G263200 chr2D 585730158 585733051 2893 True 1983.500000 3291 89.708000 438 3260 2 chr2D.!!$R3 2822
9 TraesCS5D01G263200 chr2D 103015572 103017838 2266 True 1515.000000 1735 90.927500 438 2692 2 chr2D.!!$R2 2254
10 TraesCS5D01G263200 chr1D 422072812 422074490 1678 False 2355.000000 2355 91.889000 438 2148 1 chr1D.!!$F2 1710
11 TraesCS5D01G263200 chr7D 11642996 11644964 1968 False 2289.000000 2289 87.818000 1213 3216 1 chr7D.!!$F1 2003
12 TraesCS5D01G263200 chr7D 498405590 498406727 1137 False 1127.000000 1127 85.025000 438 1581 1 chr7D.!!$F2 1143
13 TraesCS5D01G263200 chr7D 192454863 192455524 661 True 673.000000 673 85.994000 2636 3260 1 chr7D.!!$R1 624
14 TraesCS5D01G263200 chr3B 813212319 813213627 1308 True 1635.000000 1635 89.079000 1213 2556 1 chr3B.!!$R1 1343
15 TraesCS5D01G263200 chr3B 635270660 635271450 790 False 1035.000000 1035 90.036000 866 1686 1 chr3B.!!$F1 820
16 TraesCS5D01G263200 chr3B 85163567 85166156 2589 True 974.633333 1873 90.626667 438 3260 3 chr3B.!!$R2 2822
17 TraesCS5D01G263200 chr4B 531106784 531108391 1607 False 1831.000000 1831 87.823000 1698 3260 1 chr4B.!!$F1 1562
18 TraesCS5D01G263200 chr3D 550289852 550291138 1286 True 1663.000000 1663 90.144000 1967 3260 1 chr3D.!!$R1 1293
19 TraesCS5D01G263200 chr3D 603108052 603110169 2117 True 1515.500000 1740 92.104500 438 2556 2 chr3D.!!$R4 2118
20 TraesCS5D01G263200 chr3D 550302403 550303361 958 True 1203.000000 1203 89.257000 484 1468 1 chr3D.!!$R2 984
21 TraesCS5D01G263200 chr7A 110524583 110526052 1469 False 1585.000000 1585 86.756000 1299 2732 1 chr7A.!!$F1 1433
22 TraesCS5D01G263200 chr2A 14784493 14786119 1626 False 1561.000000 1561 84.366000 1300 2982 1 chr2A.!!$F1 1682
23 TraesCS5D01G263200 chr1B 229996891 229997947 1056 False 1127.000000 1127 85.976000 436 1516 1 chr1B.!!$F1 1080
24 TraesCS5D01G263200 chr3A 674546289 674546844 555 True 475.000000 475 82.837000 2670 3216 1 chr3A.!!$R2 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 88 0.034186 TCCCAGCAACCATGACCATC 60.034 55.0 0.0 0.0 0.0 3.51 F
245 246 0.035725 AACCTTACAGCCCGCCTTAC 60.036 55.0 0.0 0.0 0.0 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2050 2326 0.251474 TGCTCCTTGGCAAGCTTCAT 60.251 50.000 21.77 0.0 39.43 2.57 R
2268 2546 7.052248 GCCTACTAATTACTTTACCCACACAT 58.948 38.462 0.00 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.371910 AGCTCCTTACGTGAAAGCTC 57.628 50.000 10.12 0.00 38.96 4.09
20 21 1.896465 AGCTCCTTACGTGAAAGCTCT 59.104 47.619 10.12 0.00 38.96 4.09
21 22 3.090037 AGCTCCTTACGTGAAAGCTCTA 58.910 45.455 10.12 0.00 38.96 2.43
22 23 3.129638 AGCTCCTTACGTGAAAGCTCTAG 59.870 47.826 10.12 0.00 38.96 2.43
23 24 3.128938 GCTCCTTACGTGAAAGCTCTAGA 59.871 47.826 0.00 0.00 0.00 2.43
24 25 4.380655 GCTCCTTACGTGAAAGCTCTAGAA 60.381 45.833 0.00 0.00 0.00 2.10
25 26 5.710984 CTCCTTACGTGAAAGCTCTAGAAA 58.289 41.667 0.00 0.00 0.00 2.52
26 27 5.710984 TCCTTACGTGAAAGCTCTAGAAAG 58.289 41.667 0.00 0.00 0.00 2.62
27 28 5.475909 TCCTTACGTGAAAGCTCTAGAAAGA 59.524 40.000 0.00 0.00 0.00 2.52
28 29 6.153000 TCCTTACGTGAAAGCTCTAGAAAGAT 59.847 38.462 0.00 0.00 0.00 2.40
29 30 6.814146 CCTTACGTGAAAGCTCTAGAAAGATT 59.186 38.462 0.00 0.00 0.00 2.40
30 31 7.009723 CCTTACGTGAAAGCTCTAGAAAGATTC 59.990 40.741 0.00 0.00 0.00 2.52
31 32 6.031751 ACGTGAAAGCTCTAGAAAGATTCT 57.968 37.500 0.00 0.00 43.72 2.40
32 33 6.096695 ACGTGAAAGCTCTAGAAAGATTCTC 58.903 40.000 0.00 0.00 41.14 2.87
33 34 5.229052 CGTGAAAGCTCTAGAAAGATTCTCG 59.771 44.000 12.82 12.82 41.14 4.04
34 35 5.005299 GTGAAAGCTCTAGAAAGATTCTCGC 59.995 44.000 0.00 0.00 41.14 5.03
35 36 4.727507 AAGCTCTAGAAAGATTCTCGCA 57.272 40.909 0.00 0.00 41.14 5.10
36 37 4.727507 AGCTCTAGAAAGATTCTCGCAA 57.272 40.909 0.00 0.00 41.14 4.85
37 38 4.429108 AGCTCTAGAAAGATTCTCGCAAC 58.571 43.478 0.00 0.00 41.14 4.17
38 39 3.553917 GCTCTAGAAAGATTCTCGCAACC 59.446 47.826 0.00 0.00 41.14 3.77
39 40 4.679372 GCTCTAGAAAGATTCTCGCAACCT 60.679 45.833 0.00 0.00 41.14 3.50
40 41 5.000012 TCTAGAAAGATTCTCGCAACCTC 58.000 43.478 0.00 0.00 41.14 3.85
41 42 2.611518 AGAAAGATTCTCGCAACCTCG 58.388 47.619 0.00 0.00 34.07 4.63
42 43 2.028930 AGAAAGATTCTCGCAACCTCGT 60.029 45.455 0.00 0.00 34.07 4.18
43 44 2.457366 AAGATTCTCGCAACCTCGTT 57.543 45.000 0.00 0.00 0.00 3.85
44 45 2.457366 AGATTCTCGCAACCTCGTTT 57.543 45.000 0.00 0.00 0.00 3.60
45 46 2.767505 AGATTCTCGCAACCTCGTTTT 58.232 42.857 0.00 0.00 0.00 2.43
46 47 2.480419 AGATTCTCGCAACCTCGTTTTG 59.520 45.455 0.00 0.00 0.00 2.44
47 48 0.941542 TTCTCGCAACCTCGTTTTGG 59.058 50.000 0.00 0.00 0.00 3.28
48 49 1.082104 CTCGCAACCTCGTTTTGGC 60.082 57.895 0.00 0.00 0.00 4.52
49 50 2.426752 CGCAACCTCGTTTTGGCG 60.427 61.111 0.00 0.00 0.00 5.69
50 51 2.729491 GCAACCTCGTTTTGGCGC 60.729 61.111 0.00 0.00 0.00 6.53
51 52 2.050442 CAACCTCGTTTTGGCGCC 60.050 61.111 22.73 22.73 0.00 6.53
52 53 3.292159 AACCTCGTTTTGGCGCCC 61.292 61.111 26.77 7.25 0.00 6.13
53 54 4.572571 ACCTCGTTTTGGCGCCCA 62.573 61.111 26.77 11.12 0.00 5.36
54 55 3.737172 CCTCGTTTTGGCGCCCAG 61.737 66.667 26.77 10.69 33.81 4.45
68 69 4.473520 CCAGCGGTGGGAGCGAAT 62.474 66.667 26.09 0.00 42.41 3.34
69 70 2.892425 CAGCGGTGGGAGCGAATC 60.892 66.667 6.74 0.00 42.41 2.52
77 78 3.502572 GGAGCGAATCCCAGCAAC 58.497 61.111 0.00 0.00 43.01 4.17
78 79 2.115291 GGAGCGAATCCCAGCAACC 61.115 63.158 0.00 0.00 43.01 3.77
79 80 1.377202 GAGCGAATCCCAGCAACCA 60.377 57.895 0.00 0.00 35.48 3.67
80 81 0.749454 GAGCGAATCCCAGCAACCAT 60.749 55.000 0.00 0.00 35.48 3.55
81 82 1.033746 AGCGAATCCCAGCAACCATG 61.034 55.000 0.00 0.00 35.48 3.66
82 83 1.031571 GCGAATCCCAGCAACCATGA 61.032 55.000 0.00 0.00 0.00 3.07
83 84 0.734889 CGAATCCCAGCAACCATGAC 59.265 55.000 0.00 0.00 0.00 3.06
84 85 1.106285 GAATCCCAGCAACCATGACC 58.894 55.000 0.00 0.00 0.00 4.02
85 86 0.409092 AATCCCAGCAACCATGACCA 59.591 50.000 0.00 0.00 0.00 4.02
86 87 0.632835 ATCCCAGCAACCATGACCAT 59.367 50.000 0.00 0.00 0.00 3.55
87 88 0.034186 TCCCAGCAACCATGACCATC 60.034 55.000 0.00 0.00 0.00 3.51
88 89 1.378882 CCCAGCAACCATGACCATCG 61.379 60.000 0.00 0.00 0.00 3.84
89 90 1.378882 CCAGCAACCATGACCATCGG 61.379 60.000 0.00 0.00 0.00 4.18
90 91 0.392863 CAGCAACCATGACCATCGGA 60.393 55.000 0.00 0.00 0.00 4.55
91 92 0.548031 AGCAACCATGACCATCGGAT 59.452 50.000 0.00 0.00 0.00 4.18
92 93 0.947244 GCAACCATGACCATCGGATC 59.053 55.000 0.00 0.00 0.00 3.36
93 94 1.746861 GCAACCATGACCATCGGATCA 60.747 52.381 0.00 0.00 0.00 2.92
94 95 2.642427 CAACCATGACCATCGGATCAA 58.358 47.619 0.00 0.00 0.00 2.57
95 96 3.216800 CAACCATGACCATCGGATCAAT 58.783 45.455 0.00 0.00 0.00 2.57
96 97 4.388485 CAACCATGACCATCGGATCAATA 58.612 43.478 0.00 0.00 0.00 1.90
97 98 4.277515 ACCATGACCATCGGATCAATAG 57.722 45.455 0.00 0.00 0.00 1.73
98 99 3.903714 ACCATGACCATCGGATCAATAGA 59.096 43.478 0.00 0.00 0.00 1.98
99 100 4.020751 ACCATGACCATCGGATCAATAGAG 60.021 45.833 0.00 0.00 0.00 2.43
100 101 4.020751 CCATGACCATCGGATCAATAGAGT 60.021 45.833 0.00 0.00 0.00 3.24
101 102 5.512060 CCATGACCATCGGATCAATAGAGTT 60.512 44.000 0.00 0.00 0.00 3.01
102 103 5.201713 TGACCATCGGATCAATAGAGTTC 57.798 43.478 0.00 0.00 0.00 3.01
103 104 4.649218 TGACCATCGGATCAATAGAGTTCA 59.351 41.667 0.00 0.00 0.00 3.18
104 105 5.305386 TGACCATCGGATCAATAGAGTTCAT 59.695 40.000 0.00 0.00 0.00 2.57
105 106 5.788450 ACCATCGGATCAATAGAGTTCATC 58.212 41.667 0.00 0.00 0.00 2.92
106 107 5.305386 ACCATCGGATCAATAGAGTTCATCA 59.695 40.000 0.00 0.00 0.00 3.07
107 108 6.013898 ACCATCGGATCAATAGAGTTCATCAT 60.014 38.462 0.00 0.00 0.00 2.45
108 109 6.877855 CCATCGGATCAATAGAGTTCATCATT 59.122 38.462 0.00 0.00 0.00 2.57
109 110 7.148457 CCATCGGATCAATAGAGTTCATCATTG 60.148 40.741 0.00 0.00 32.35 2.82
110 111 7.054491 TCGGATCAATAGAGTTCATCATTGA 57.946 36.000 0.00 0.00 38.56 2.57
111 112 7.674120 TCGGATCAATAGAGTTCATCATTGAT 58.326 34.615 8.05 8.05 42.45 2.57
112 113 8.806146 TCGGATCAATAGAGTTCATCATTGATA 58.194 33.333 8.25 0.00 41.30 2.15
113 114 9.428097 CGGATCAATAGAGTTCATCATTGATAA 57.572 33.333 8.25 0.00 41.30 1.75
118 119 9.622004 CAATAGAGTTCATCATTGATAAATGGC 57.378 33.333 2.80 0.00 32.59 4.40
119 120 8.929260 ATAGAGTTCATCATTGATAAATGGCA 57.071 30.769 2.80 0.00 0.00 4.92
120 121 7.273320 AGAGTTCATCATTGATAAATGGCAG 57.727 36.000 2.80 0.00 0.00 4.85
121 122 5.839621 AGTTCATCATTGATAAATGGCAGC 58.160 37.500 2.80 0.00 0.00 5.25
122 123 4.492791 TCATCATTGATAAATGGCAGCG 57.507 40.909 2.80 0.00 0.00 5.18
123 124 4.136051 TCATCATTGATAAATGGCAGCGA 58.864 39.130 2.80 0.00 0.00 4.93
124 125 4.763279 TCATCATTGATAAATGGCAGCGAT 59.237 37.500 2.80 0.00 0.00 4.58
125 126 5.242171 TCATCATTGATAAATGGCAGCGATT 59.758 36.000 2.80 0.00 0.00 3.34
126 127 5.518848 TCATTGATAAATGGCAGCGATTT 57.481 34.783 18.18 18.18 0.00 2.17
127 128 6.631971 TCATTGATAAATGGCAGCGATTTA 57.368 33.333 20.89 20.89 31.01 1.40
128 129 6.437928 TCATTGATAAATGGCAGCGATTTAC 58.562 36.000 21.01 15.73 29.66 2.01
129 130 4.829064 TGATAAATGGCAGCGATTTACC 57.171 40.909 21.01 14.38 29.66 2.85
130 131 4.460263 TGATAAATGGCAGCGATTTACCT 58.540 39.130 21.01 9.54 29.66 3.08
131 132 4.515191 TGATAAATGGCAGCGATTTACCTC 59.485 41.667 21.01 16.56 29.66 3.85
132 133 1.299541 AATGGCAGCGATTTACCTCG 58.700 50.000 0.00 0.00 41.54 4.63
133 134 0.178068 ATGGCAGCGATTTACCTCGT 59.822 50.000 0.00 0.00 40.73 4.18
134 135 0.739462 TGGCAGCGATTTACCTCGTG 60.739 55.000 0.00 0.00 40.73 4.35
135 136 1.429148 GGCAGCGATTTACCTCGTGG 61.429 60.000 0.99 0.99 40.73 4.94
136 137 0.459585 GCAGCGATTTACCTCGTGGA 60.460 55.000 11.17 0.00 40.73 4.02
137 138 2.004583 CAGCGATTTACCTCGTGGAA 57.995 50.000 11.17 0.00 40.73 3.53
138 139 1.927174 CAGCGATTTACCTCGTGGAAG 59.073 52.381 11.17 0.00 40.73 3.46
139 140 1.822990 AGCGATTTACCTCGTGGAAGA 59.177 47.619 11.17 0.00 40.73 2.87
140 141 2.232941 AGCGATTTACCTCGTGGAAGAA 59.767 45.455 11.17 2.27 40.73 2.52
141 142 2.997986 GCGATTTACCTCGTGGAAGAAA 59.002 45.455 11.17 7.82 40.73 2.52
142 143 3.621715 GCGATTTACCTCGTGGAAGAAAT 59.378 43.478 11.17 11.92 40.73 2.17
143 144 4.260253 GCGATTTACCTCGTGGAAGAAATC 60.260 45.833 20.68 20.68 40.73 2.17
144 145 4.868171 CGATTTACCTCGTGGAAGAAATCA 59.132 41.667 25.07 4.69 38.63 2.57
145 146 5.350365 CGATTTACCTCGTGGAAGAAATCAA 59.650 40.000 25.07 3.05 38.63 2.57
146 147 5.934935 TTTACCTCGTGGAAGAAATCAAC 57.065 39.130 11.17 0.00 37.04 3.18
153 154 4.342352 GTGGAAGAAATCAACGGCTAAG 57.658 45.455 0.00 0.00 0.00 2.18
154 155 4.000988 GTGGAAGAAATCAACGGCTAAGA 58.999 43.478 0.00 0.00 0.00 2.10
155 156 4.454504 GTGGAAGAAATCAACGGCTAAGAA 59.545 41.667 0.00 0.00 0.00 2.52
156 157 5.048991 GTGGAAGAAATCAACGGCTAAGAAA 60.049 40.000 0.00 0.00 0.00 2.52
157 158 5.710099 TGGAAGAAATCAACGGCTAAGAAAT 59.290 36.000 0.00 0.00 0.00 2.17
158 159 6.208599 TGGAAGAAATCAACGGCTAAGAAATT 59.791 34.615 0.00 0.00 0.00 1.82
159 160 6.747739 GGAAGAAATCAACGGCTAAGAAATTC 59.252 38.462 0.00 0.00 0.00 2.17
160 161 7.362142 GGAAGAAATCAACGGCTAAGAAATTCT 60.362 37.037 0.00 0.00 0.00 2.40
161 162 7.078011 AGAAATCAACGGCTAAGAAATTCTC 57.922 36.000 0.00 0.00 0.00 2.87
162 163 5.470845 AATCAACGGCTAAGAAATTCTCG 57.529 39.130 0.00 0.00 0.00 4.04
163 164 3.921677 TCAACGGCTAAGAAATTCTCGT 58.078 40.909 0.00 0.00 0.00 4.18
164 165 3.678072 TCAACGGCTAAGAAATTCTCGTG 59.322 43.478 7.96 4.13 0.00 4.35
165 166 2.000447 ACGGCTAAGAAATTCTCGTGC 59.000 47.619 6.66 6.50 0.00 5.34
166 167 2.271800 CGGCTAAGAAATTCTCGTGCT 58.728 47.619 0.00 0.00 0.00 4.40
167 168 2.673368 CGGCTAAGAAATTCTCGTGCTT 59.327 45.455 0.00 0.00 0.00 3.91
168 169 3.242123 CGGCTAAGAAATTCTCGTGCTTC 60.242 47.826 0.00 0.00 0.00 3.86
169 170 3.684788 GGCTAAGAAATTCTCGTGCTTCA 59.315 43.478 0.00 0.00 0.00 3.02
170 171 4.436183 GGCTAAGAAATTCTCGTGCTTCAC 60.436 45.833 0.00 0.00 0.00 3.18
171 172 4.390297 GCTAAGAAATTCTCGTGCTTCACT 59.610 41.667 0.00 0.00 31.34 3.41
172 173 4.739046 AAGAAATTCTCGTGCTTCACTG 57.261 40.909 0.00 0.00 31.34 3.66
173 174 2.481952 AGAAATTCTCGTGCTTCACTGC 59.518 45.455 0.00 0.00 31.34 4.40
174 175 0.792640 AATTCTCGTGCTTCACTGCG 59.207 50.000 0.00 0.00 35.36 5.18
175 176 0.038251 ATTCTCGTGCTTCACTGCGA 60.038 50.000 0.00 0.00 35.36 5.10
176 177 3.456798 CTCGTGCTTCACTGCGAG 58.543 61.111 0.00 0.00 43.42 5.03
177 178 2.724708 CTCGTGCTTCACTGCGAGC 61.725 63.158 0.00 0.00 43.02 5.03
178 179 4.126390 CGTGCTTCACTGCGAGCG 62.126 66.667 0.00 0.00 35.36 5.03
179 180 3.782244 GTGCTTCACTGCGAGCGG 61.782 66.667 1.84 1.84 35.36 5.52
182 183 2.181777 CTTCACTGCGAGCGGCTA 59.818 61.111 0.60 0.00 44.05 3.93
183 184 1.227089 CTTCACTGCGAGCGGCTAT 60.227 57.895 0.60 0.00 44.05 2.97
184 185 1.211818 CTTCACTGCGAGCGGCTATC 61.212 60.000 0.60 0.00 44.05 2.08
185 186 2.629050 TTCACTGCGAGCGGCTATCC 62.629 60.000 0.60 0.00 44.05 2.59
186 187 3.147595 ACTGCGAGCGGCTATCCA 61.148 61.111 0.60 0.00 44.05 3.41
187 188 2.106938 CTGCGAGCGGCTATCCAA 59.893 61.111 0.60 0.00 44.05 3.53
188 189 1.521457 CTGCGAGCGGCTATCCAAA 60.521 57.895 0.60 0.00 44.05 3.28
189 190 1.493950 CTGCGAGCGGCTATCCAAAG 61.494 60.000 0.60 0.00 44.05 2.77
190 191 1.521681 GCGAGCGGCTATCCAAAGT 60.522 57.895 0.60 0.00 39.11 2.66
191 192 1.090052 GCGAGCGGCTATCCAAAGTT 61.090 55.000 0.60 0.00 39.11 2.66
192 193 1.369625 CGAGCGGCTATCCAAAGTTT 58.630 50.000 0.60 0.00 0.00 2.66
193 194 1.062587 CGAGCGGCTATCCAAAGTTTG 59.937 52.381 0.60 8.73 0.00 2.93
194 195 2.356135 GAGCGGCTATCCAAAGTTTGA 58.644 47.619 17.33 3.88 0.00 2.69
195 196 2.747446 GAGCGGCTATCCAAAGTTTGAA 59.253 45.455 17.33 0.00 0.00 2.69
196 197 3.153919 AGCGGCTATCCAAAGTTTGAAA 58.846 40.909 17.33 5.22 0.00 2.69
197 198 3.572255 AGCGGCTATCCAAAGTTTGAAAA 59.428 39.130 17.33 2.73 0.00 2.29
198 199 4.220602 AGCGGCTATCCAAAGTTTGAAAAT 59.779 37.500 17.33 9.62 0.00 1.82
199 200 4.929211 GCGGCTATCCAAAGTTTGAAAATT 59.071 37.500 17.33 0.00 0.00 1.82
200 201 5.163963 GCGGCTATCCAAAGTTTGAAAATTG 60.164 40.000 17.33 9.18 0.00 2.32
201 202 5.925969 CGGCTATCCAAAGTTTGAAAATTGT 59.074 36.000 17.33 0.00 0.00 2.71
202 203 6.423604 CGGCTATCCAAAGTTTGAAAATTGTT 59.576 34.615 17.33 0.00 0.00 2.83
203 204 7.569226 CGGCTATCCAAAGTTTGAAAATTGTTG 60.569 37.037 17.33 0.00 0.00 3.33
204 205 7.226523 GGCTATCCAAAGTTTGAAAATTGTTGT 59.773 33.333 17.33 0.00 0.00 3.32
205 206 9.255304 GCTATCCAAAGTTTGAAAATTGTTGTA 57.745 29.630 17.33 0.00 0.00 2.41
225 226 9.941325 TGTTGTACTATAGTAGTAGAGATAGCC 57.059 37.037 12.99 0.00 41.59 3.93
226 227 9.941325 GTTGTACTATAGTAGTAGAGATAGCCA 57.059 37.037 12.99 0.69 41.59 4.75
228 229 9.941325 TGTACTATAGTAGTAGAGATAGCCAAC 57.059 37.037 12.99 0.00 41.59 3.77
229 230 9.382275 GTACTATAGTAGTAGAGATAGCCAACC 57.618 40.741 12.99 0.00 41.59 3.77
230 231 8.222138 ACTATAGTAGTAGAGATAGCCAACCT 57.778 38.462 2.75 0.00 37.23 3.50
231 232 8.671409 ACTATAGTAGTAGAGATAGCCAACCTT 58.329 37.037 2.75 0.00 37.23 3.50
233 234 8.866970 ATAGTAGTAGAGATAGCCAACCTTAC 57.133 38.462 0.00 0.00 0.00 2.34
234 235 6.670617 AGTAGTAGAGATAGCCAACCTTACA 58.329 40.000 0.00 0.00 0.00 2.41
235 236 6.773685 AGTAGTAGAGATAGCCAACCTTACAG 59.226 42.308 0.00 0.00 0.00 2.74
236 237 3.828875 AGAGATAGCCAACCTTACAGC 57.171 47.619 0.00 0.00 0.00 4.40
237 238 2.436173 AGAGATAGCCAACCTTACAGCC 59.564 50.000 0.00 0.00 0.00 4.85
238 239 1.490910 AGATAGCCAACCTTACAGCCC 59.509 52.381 0.00 0.00 0.00 5.19
239 240 0.180406 ATAGCCAACCTTACAGCCCG 59.820 55.000 0.00 0.00 0.00 6.13
240 241 2.530958 TAGCCAACCTTACAGCCCGC 62.531 60.000 0.00 0.00 0.00 6.13
241 242 2.750237 CCAACCTTACAGCCCGCC 60.750 66.667 0.00 0.00 0.00 6.13
242 243 2.351276 CAACCTTACAGCCCGCCT 59.649 61.111 0.00 0.00 0.00 5.52
243 244 1.303317 CAACCTTACAGCCCGCCTT 60.303 57.895 0.00 0.00 0.00 4.35
244 245 0.035820 CAACCTTACAGCCCGCCTTA 60.036 55.000 0.00 0.00 0.00 2.69
245 246 0.035725 AACCTTACAGCCCGCCTTAC 60.036 55.000 0.00 0.00 0.00 2.34
246 247 0.908180 ACCTTACAGCCCGCCTTACT 60.908 55.000 0.00 0.00 0.00 2.24
247 248 1.117150 CCTTACAGCCCGCCTTACTA 58.883 55.000 0.00 0.00 0.00 1.82
248 249 1.692519 CCTTACAGCCCGCCTTACTAT 59.307 52.381 0.00 0.00 0.00 2.12
249 250 2.895404 CCTTACAGCCCGCCTTACTATA 59.105 50.000 0.00 0.00 0.00 1.31
250 251 3.514309 CCTTACAGCCCGCCTTACTATAT 59.486 47.826 0.00 0.00 0.00 0.86
251 252 4.495422 CTTACAGCCCGCCTTACTATATG 58.505 47.826 0.00 0.00 0.00 1.78
252 253 2.605257 ACAGCCCGCCTTACTATATGA 58.395 47.619 0.00 0.00 0.00 2.15
253 254 2.563179 ACAGCCCGCCTTACTATATGAG 59.437 50.000 0.00 0.00 0.00 2.90
254 255 2.563179 CAGCCCGCCTTACTATATGAGT 59.437 50.000 0.00 0.00 42.69 3.41
255 256 2.563179 AGCCCGCCTTACTATATGAGTG 59.437 50.000 0.00 0.00 39.39 3.51
256 257 2.561419 GCCCGCCTTACTATATGAGTGA 59.439 50.000 0.00 0.00 39.39 3.41
257 258 3.367498 GCCCGCCTTACTATATGAGTGAG 60.367 52.174 0.00 0.00 40.65 3.51
258 259 3.827302 CCCGCCTTACTATATGAGTGAGT 59.173 47.826 0.00 0.00 39.60 3.41
259 260 4.321304 CCCGCCTTACTATATGAGTGAGTG 60.321 50.000 0.00 0.00 39.60 3.51
260 261 4.278669 CCGCCTTACTATATGAGTGAGTGT 59.721 45.833 0.00 0.00 39.60 3.55
261 262 5.472478 CCGCCTTACTATATGAGTGAGTGTA 59.528 44.000 0.00 0.00 39.60 2.90
262 263 6.372185 CGCCTTACTATATGAGTGAGTGTAC 58.628 44.000 0.00 0.00 39.60 2.90
263 264 6.205076 CGCCTTACTATATGAGTGAGTGTACT 59.795 42.308 0.00 0.00 39.60 2.73
264 265 7.387122 CGCCTTACTATATGAGTGAGTGTACTA 59.613 40.741 0.00 0.00 39.60 1.82
265 266 8.723311 GCCTTACTATATGAGTGAGTGTACTAG 58.277 40.741 0.00 0.00 39.60 2.57
266 267 9.999660 CCTTACTATATGAGTGAGTGTACTAGA 57.000 37.037 0.00 0.00 39.60 2.43
270 271 9.496873 ACTATATGAGTGAGTGTACTAGATGAC 57.503 37.037 0.00 0.00 36.87 3.06
271 272 9.719355 CTATATGAGTGAGTGTACTAGATGACT 57.281 37.037 0.00 0.00 0.00 3.41
275 276 9.719355 ATGAGTGAGTGTACTAGATGACTATAG 57.281 37.037 0.00 0.00 0.00 1.31
276 277 8.925338 TGAGTGAGTGTACTAGATGACTATAGA 58.075 37.037 6.78 0.00 0.00 1.98
277 278 9.938280 GAGTGAGTGTACTAGATGACTATAGAT 57.062 37.037 6.78 0.00 0.00 1.98
278 279 9.719355 AGTGAGTGTACTAGATGACTATAGATG 57.281 37.037 6.78 0.00 0.00 2.90
279 280 9.713713 GTGAGTGTACTAGATGACTATAGATGA 57.286 37.037 6.78 0.00 0.00 2.92
280 281 9.713713 TGAGTGTACTAGATGACTATAGATGAC 57.286 37.037 6.78 0.00 0.00 3.06
281 282 9.713713 GAGTGTACTAGATGACTATAGATGACA 57.286 37.037 6.78 1.86 0.00 3.58
284 285 9.454859 TGTACTAGATGACTATAGATGACATGG 57.545 37.037 6.78 3.10 0.00 3.66
285 286 7.403312 ACTAGATGACTATAGATGACATGGC 57.597 40.000 6.78 0.00 0.00 4.40
286 287 6.950619 ACTAGATGACTATAGATGACATGGCA 59.049 38.462 2.18 2.18 0.00 4.92
287 288 6.870895 AGATGACTATAGATGACATGGCAT 57.129 37.500 15.73 15.73 0.00 4.40
288 289 6.876155 AGATGACTATAGATGACATGGCATC 58.124 40.000 30.85 30.85 43.88 3.91
299 300 5.604758 TGACATGGCATCTCTATATAGCC 57.395 43.478 0.00 4.08 45.41 3.93
305 306 4.630111 GGCATCTCTATATAGCCATCAGC 58.370 47.826 4.75 4.47 44.59 4.26
322 323 6.109359 CCATCAGCTGGCTATACTATTAACC 58.891 44.000 15.13 0.00 38.47 2.85
323 324 6.295859 CCATCAGCTGGCTATACTATTAACCA 60.296 42.308 15.13 0.00 38.47 3.67
324 325 6.935240 TCAGCTGGCTATACTATTAACCAT 57.065 37.500 15.13 0.00 0.00 3.55
325 326 6.701340 TCAGCTGGCTATACTATTAACCATG 58.299 40.000 15.13 0.00 0.00 3.66
326 327 5.352569 CAGCTGGCTATACTATTAACCATGC 59.647 44.000 5.57 0.00 0.00 4.06
327 328 5.249393 AGCTGGCTATACTATTAACCATGCT 59.751 40.000 0.00 0.00 31.38 3.79
328 329 5.582665 GCTGGCTATACTATTAACCATGCTC 59.417 44.000 0.00 0.00 0.00 4.26
329 330 6.575254 GCTGGCTATACTATTAACCATGCTCT 60.575 42.308 0.00 0.00 0.00 4.09
330 331 7.316393 TGGCTATACTATTAACCATGCTCTT 57.684 36.000 0.00 0.00 0.00 2.85
331 332 8.430573 TGGCTATACTATTAACCATGCTCTTA 57.569 34.615 0.00 0.00 0.00 2.10
332 333 8.311836 TGGCTATACTATTAACCATGCTCTTAC 58.688 37.037 0.00 0.00 0.00 2.34
333 334 8.532819 GGCTATACTATTAACCATGCTCTTACT 58.467 37.037 0.00 0.00 0.00 2.24
334 335 9.360093 GCTATACTATTAACCATGCTCTTACTG 57.640 37.037 0.00 0.00 0.00 2.74
343 344 9.764363 TTAACCATGCTCTTACTGATTATACTG 57.236 33.333 0.00 0.00 0.00 2.74
344 345 7.603180 ACCATGCTCTTACTGATTATACTGA 57.397 36.000 0.00 0.00 0.00 3.41
345 346 7.437748 ACCATGCTCTTACTGATTATACTGAC 58.562 38.462 0.00 0.00 0.00 3.51
346 347 7.288852 ACCATGCTCTTACTGATTATACTGACT 59.711 37.037 0.00 0.00 0.00 3.41
347 348 8.797438 CCATGCTCTTACTGATTATACTGACTA 58.203 37.037 0.00 0.00 0.00 2.59
366 367 8.956426 ACTGACTAATGAAAGAAAACTTGTTCA 58.044 29.630 0.00 0.00 34.68 3.18
367 368 9.226345 CTGACTAATGAAAGAAAACTTGTTCAC 57.774 33.333 0.00 0.00 33.09 3.18
368 369 7.908082 TGACTAATGAAAGAAAACTTGTTCACG 59.092 33.333 0.00 0.00 33.09 4.35
369 370 5.949233 AATGAAAGAAAACTTGTTCACGC 57.051 34.783 0.00 0.00 33.09 5.34
370 371 4.427096 TGAAAGAAAACTTGTTCACGCA 57.573 36.364 0.00 0.00 0.00 5.24
371 372 4.162812 TGAAAGAAAACTTGTTCACGCAC 58.837 39.130 0.00 0.00 0.00 5.34
372 373 2.452006 AGAAAACTTGTTCACGCACG 57.548 45.000 0.00 0.00 0.00 5.34
373 374 1.735571 AGAAAACTTGTTCACGCACGT 59.264 42.857 0.00 0.00 0.00 4.49
374 375 1.837747 GAAAACTTGTTCACGCACGTG 59.162 47.619 16.73 16.73 46.64 4.49
375 376 0.522495 AAACTTGTTCACGCACGTGC 60.522 50.000 30.42 30.42 45.04 5.34
400 401 3.858989 CGCACACACACACGCACA 61.859 61.111 0.00 0.00 0.00 4.57
401 402 2.277247 GCACACACACACGCACAC 60.277 61.111 0.00 0.00 0.00 3.82
402 403 3.033166 GCACACACACACGCACACA 62.033 57.895 0.00 0.00 0.00 3.72
403 404 1.225991 CACACACACACGCACACAC 60.226 57.895 0.00 0.00 0.00 3.82
404 405 2.021243 CACACACACGCACACACG 59.979 61.111 0.00 0.00 39.50 4.49
405 406 3.192230 ACACACACGCACACACGG 61.192 61.111 0.00 0.00 37.37 4.94
406 407 2.888051 CACACACGCACACACGGA 60.888 61.111 0.00 0.00 37.37 4.69
407 408 2.888534 ACACACGCACACACGGAC 60.889 61.111 0.00 0.00 37.37 4.79
408 409 3.983562 CACACGCACACACGGACG 61.984 66.667 0.00 0.00 37.37 4.79
428 429 3.858989 CGCGCACACACACACACA 61.859 61.111 8.75 0.00 0.00 3.72
429 430 2.277247 GCGCACACACACACACAC 60.277 61.111 0.30 0.00 0.00 3.82
430 431 2.021243 CGCACACACACACACACG 59.979 61.111 0.00 0.00 0.00 4.49
431 432 2.277247 GCACACACACACACACGC 60.277 61.111 0.00 0.00 0.00 5.34
432 433 3.033166 GCACACACACACACACGCA 62.033 57.895 0.00 0.00 0.00 5.24
433 434 1.225991 CACACACACACACACGCAC 60.226 57.895 0.00 0.00 0.00 5.34
434 435 1.669437 ACACACACACACACGCACA 60.669 52.632 0.00 0.00 0.00 4.57
514 518 4.759516 ACGATTTTGTGCGGAAAACTAT 57.240 36.364 0.00 0.00 0.00 2.12
563 568 1.542915 CTACCAAGTCTCGAAACCGGA 59.457 52.381 9.46 0.00 0.00 5.14
1061 1110 5.239525 GTGGTTCTTACACTGAATCTTTGCT 59.760 40.000 0.00 0.00 35.98 3.91
1173 1222 4.883585 CAGCAGGTATTAAATCTTGCAGGA 59.116 41.667 0.00 0.00 38.75 3.86
1318 1424 0.516001 GTGCAGAGATGTGTGCTGTG 59.484 55.000 13.32 0.00 43.47 3.66
1501 1728 9.755804 CAGAGTTACATGAATTTATCTCTGCTA 57.244 33.333 11.35 0.00 40.28 3.49
1741 2013 1.994885 CTGTGGGGTTGTGGAGTGGT 61.995 60.000 0.00 0.00 0.00 4.16
2268 2546 7.532571 CAATTATGAATGAGTGAAGTGCTTGA 58.467 34.615 0.00 0.00 0.00 3.02
2278 2556 2.105649 TGAAGTGCTTGATGTGTGGGTA 59.894 45.455 0.00 0.00 0.00 3.69
2391 2679 5.163163 CCTGAATCAAGATGGTATGAGGGAA 60.163 44.000 0.00 0.00 0.00 3.97
2427 2715 6.894339 ATGGTTTAAGAACTAGGTGGTTTG 57.106 37.500 0.00 0.00 36.03 2.93
2428 2716 5.134661 TGGTTTAAGAACTAGGTGGTTTGG 58.865 41.667 0.00 0.00 36.03 3.28
2577 2887 6.650427 AACTGACAGTAGTGACATAGTTGA 57.350 37.500 8.91 0.00 0.00 3.18
2796 3429 4.546570 GGTTTCAAACTGAACATAGTGCC 58.453 43.478 0.00 0.00 35.89 5.01
2848 3481 4.098960 ACTTACGAAAGTTCAGGACTGACA 59.901 41.667 0.67 0.00 43.60 3.58
2851 3484 3.621715 ACGAAAGTTCAGGACTGACAAAC 59.378 43.478 0.67 0.00 46.40 2.93
2852 3485 3.871594 CGAAAGTTCAGGACTGACAAACT 59.128 43.478 0.67 0.58 39.66 2.66
2853 3486 5.047847 CGAAAGTTCAGGACTGACAAACTA 58.952 41.667 0.67 0.00 39.66 2.24
2904 3540 3.055240 CAGCATCTCAGTCCTCCTTCTTT 60.055 47.826 0.00 0.00 0.00 2.52
2905 3541 3.197549 AGCATCTCAGTCCTCCTTCTTTC 59.802 47.826 0.00 0.00 0.00 2.62
2915 3551 3.007940 TCCTCCTTCTTTCGCATCTTCAA 59.992 43.478 0.00 0.00 0.00 2.69
3144 3793 3.432588 CAGGCTCGTCGTCGGAGT 61.433 66.667 1.55 0.00 37.69 3.85
3148 3797 1.060622 GCTCGTCGTCGGAGTGTAG 59.939 63.158 1.55 0.00 37.69 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.896465 AGAGCTTTCACGTAAGGAGCT 59.104 47.619 12.77 12.77 42.92 4.09
5 6 7.757624 AGAATCTTTCTAGAGCTTTCACGTAAG 59.242 37.037 0.00 0.00 38.49 2.34
6 7 7.603651 AGAATCTTTCTAGAGCTTTCACGTAA 58.396 34.615 0.00 0.00 38.49 3.18
7 8 7.159322 AGAATCTTTCTAGAGCTTTCACGTA 57.841 36.000 0.00 0.00 38.49 3.57
10 11 5.005299 GCGAGAATCTTTCTAGAGCTTTCAC 59.995 44.000 0.00 0.00 40.87 3.18
11 12 5.105752 GCGAGAATCTTTCTAGAGCTTTCA 58.894 41.667 0.00 0.00 40.87 2.69
12 13 5.105752 TGCGAGAATCTTTCTAGAGCTTTC 58.894 41.667 0.00 0.00 40.87 2.62
13 14 5.078411 TGCGAGAATCTTTCTAGAGCTTT 57.922 39.130 0.00 0.00 40.87 3.51
14 15 4.727507 TGCGAGAATCTTTCTAGAGCTT 57.272 40.909 0.00 0.00 40.87 3.74
15 16 4.429108 GTTGCGAGAATCTTTCTAGAGCT 58.571 43.478 0.00 0.00 40.87 4.09
16 17 3.553917 GGTTGCGAGAATCTTTCTAGAGC 59.446 47.826 0.00 4.02 40.87 4.09
17 18 5.004922 AGGTTGCGAGAATCTTTCTAGAG 57.995 43.478 0.00 0.00 40.87 2.43
18 19 4.438880 CGAGGTTGCGAGAATCTTTCTAGA 60.439 45.833 2.13 0.00 40.87 2.43
19 20 3.794028 CGAGGTTGCGAGAATCTTTCTAG 59.206 47.826 0.00 0.00 40.87 2.43
20 21 3.192844 ACGAGGTTGCGAGAATCTTTCTA 59.807 43.478 0.00 0.00 40.87 2.10
21 22 2.028930 ACGAGGTTGCGAGAATCTTTCT 60.029 45.455 0.00 0.00 44.21 2.52
22 23 2.338500 ACGAGGTTGCGAGAATCTTTC 58.662 47.619 0.00 0.00 34.83 2.62
23 24 2.457366 ACGAGGTTGCGAGAATCTTT 57.543 45.000 0.00 0.00 34.83 2.52
24 25 2.457366 AACGAGGTTGCGAGAATCTT 57.543 45.000 0.00 0.00 34.83 2.40
25 26 2.457366 AAACGAGGTTGCGAGAATCT 57.543 45.000 0.00 0.00 34.83 2.40
26 27 2.412847 CCAAAACGAGGTTGCGAGAATC 60.413 50.000 0.00 0.00 34.83 2.52
27 28 1.535462 CCAAAACGAGGTTGCGAGAAT 59.465 47.619 0.00 0.00 34.83 2.40
28 29 0.941542 CCAAAACGAGGTTGCGAGAA 59.058 50.000 0.00 0.00 34.83 2.87
29 30 1.503818 GCCAAAACGAGGTTGCGAGA 61.504 55.000 0.00 0.00 34.83 4.04
30 31 1.082104 GCCAAAACGAGGTTGCGAG 60.082 57.895 0.00 0.00 34.83 5.03
31 32 2.887889 CGCCAAAACGAGGTTGCGA 61.888 57.895 5.99 0.00 34.06 5.10
32 33 2.426752 CGCCAAAACGAGGTTGCG 60.427 61.111 0.00 0.00 34.06 4.85
33 34 2.729491 GCGCCAAAACGAGGTTGC 60.729 61.111 0.00 0.00 34.06 4.17
34 35 2.050442 GGCGCCAAAACGAGGTTG 60.050 61.111 24.80 0.00 34.06 3.77
35 36 3.292159 GGGCGCCAAAACGAGGTT 61.292 61.111 30.85 0.00 34.06 3.50
36 37 4.572571 TGGGCGCCAAAACGAGGT 62.573 61.111 30.85 0.00 34.06 3.85
37 38 3.737172 CTGGGCGCCAAAACGAGG 61.737 66.667 30.85 0.00 30.80 4.63
38 39 4.404654 GCTGGGCGCCAAAACGAG 62.405 66.667 30.85 13.97 30.80 4.18
51 52 4.473520 ATTCGCTCCCACCGCTGG 62.474 66.667 0.00 0.00 37.29 4.85
52 53 2.892425 GATTCGCTCCCACCGCTG 60.892 66.667 0.00 0.00 0.00 5.18
53 54 4.162690 GGATTCGCTCCCACCGCT 62.163 66.667 0.00 0.00 38.19 5.52
60 61 2.115291 GGTTGCTGGGATTCGCTCC 61.115 63.158 2.19 0.00 44.11 4.70
61 62 0.749454 ATGGTTGCTGGGATTCGCTC 60.749 55.000 2.19 0.00 0.00 5.03
62 63 1.033746 CATGGTTGCTGGGATTCGCT 61.034 55.000 2.19 0.00 0.00 4.93
63 64 1.031571 TCATGGTTGCTGGGATTCGC 61.032 55.000 0.00 0.00 0.00 4.70
64 65 0.734889 GTCATGGTTGCTGGGATTCG 59.265 55.000 0.00 0.00 0.00 3.34
65 66 1.106285 GGTCATGGTTGCTGGGATTC 58.894 55.000 0.00 0.00 0.00 2.52
66 67 0.409092 TGGTCATGGTTGCTGGGATT 59.591 50.000 0.00 0.00 0.00 3.01
67 68 0.632835 ATGGTCATGGTTGCTGGGAT 59.367 50.000 0.00 0.00 0.00 3.85
68 69 0.034186 GATGGTCATGGTTGCTGGGA 60.034 55.000 0.00 0.00 0.00 4.37
69 70 1.378882 CGATGGTCATGGTTGCTGGG 61.379 60.000 0.00 0.00 0.00 4.45
70 71 1.378882 CCGATGGTCATGGTTGCTGG 61.379 60.000 0.00 0.00 0.00 4.85
71 72 0.392863 TCCGATGGTCATGGTTGCTG 60.393 55.000 0.00 0.00 0.00 4.41
72 73 0.548031 ATCCGATGGTCATGGTTGCT 59.452 50.000 0.00 0.00 0.00 3.91
73 74 0.947244 GATCCGATGGTCATGGTTGC 59.053 55.000 0.00 0.00 0.00 4.17
74 75 2.330440 TGATCCGATGGTCATGGTTG 57.670 50.000 0.00 0.00 0.00 3.77
75 76 3.582998 ATTGATCCGATGGTCATGGTT 57.417 42.857 0.00 0.00 0.00 3.67
76 77 3.903714 TCTATTGATCCGATGGTCATGGT 59.096 43.478 0.00 0.00 0.00 3.55
77 78 4.020751 ACTCTATTGATCCGATGGTCATGG 60.021 45.833 0.00 0.00 0.00 3.66
78 79 5.144692 ACTCTATTGATCCGATGGTCATG 57.855 43.478 0.00 0.00 0.00 3.07
79 80 5.305386 TGAACTCTATTGATCCGATGGTCAT 59.695 40.000 0.00 0.00 0.00 3.06
80 81 4.649218 TGAACTCTATTGATCCGATGGTCA 59.351 41.667 0.00 0.00 0.00 4.02
81 82 5.201713 TGAACTCTATTGATCCGATGGTC 57.798 43.478 0.00 0.00 0.00 4.02
82 83 5.305386 TGATGAACTCTATTGATCCGATGGT 59.695 40.000 0.00 0.00 0.00 3.55
83 84 5.787380 TGATGAACTCTATTGATCCGATGG 58.213 41.667 0.00 0.00 0.00 3.51
84 85 7.601508 TCAATGATGAACTCTATTGATCCGATG 59.398 37.037 0.00 0.00 35.34 3.84
85 86 7.674120 TCAATGATGAACTCTATTGATCCGAT 58.326 34.615 0.00 0.00 35.34 4.18
86 87 7.054491 TCAATGATGAACTCTATTGATCCGA 57.946 36.000 0.00 0.00 35.34 4.55
87 88 7.902387 ATCAATGATGAACTCTATTGATCCG 57.098 36.000 0.00 0.00 43.17 4.18
92 93 9.622004 GCCATTTATCAATGATGAACTCTATTG 57.378 33.333 5.91 0.00 42.35 1.90
93 94 9.358406 TGCCATTTATCAATGATGAACTCTATT 57.642 29.630 5.91 0.00 42.35 1.73
94 95 8.929260 TGCCATTTATCAATGATGAACTCTAT 57.071 30.769 5.91 0.00 42.35 1.98
95 96 7.040892 GCTGCCATTTATCAATGATGAACTCTA 60.041 37.037 5.91 0.00 42.35 2.43
96 97 6.238953 GCTGCCATTTATCAATGATGAACTCT 60.239 38.462 5.91 0.00 42.35 3.24
97 98 5.919141 GCTGCCATTTATCAATGATGAACTC 59.081 40.000 5.91 0.00 42.35 3.01
98 99 5.506815 CGCTGCCATTTATCAATGATGAACT 60.507 40.000 5.91 0.00 42.35 3.01
99 100 4.678287 CGCTGCCATTTATCAATGATGAAC 59.322 41.667 5.91 0.00 42.35 3.18
100 101 4.579753 TCGCTGCCATTTATCAATGATGAA 59.420 37.500 5.91 4.31 42.35 2.57
101 102 4.136051 TCGCTGCCATTTATCAATGATGA 58.864 39.130 5.91 0.00 42.35 2.92
102 103 4.492791 TCGCTGCCATTTATCAATGATG 57.507 40.909 5.91 0.00 42.35 3.07
103 104 5.717078 AATCGCTGCCATTTATCAATGAT 57.283 34.783 0.00 0.00 42.35 2.45
104 105 5.518848 AAATCGCTGCCATTTATCAATGA 57.481 34.783 3.33 0.00 42.35 2.57
105 106 5.630680 GGTAAATCGCTGCCATTTATCAATG 59.369 40.000 15.24 0.00 39.79 2.82
106 107 5.536161 AGGTAAATCGCTGCCATTTATCAAT 59.464 36.000 20.12 3.31 31.63 2.57
107 108 4.887071 AGGTAAATCGCTGCCATTTATCAA 59.113 37.500 20.12 0.00 31.63 2.57
108 109 4.460263 AGGTAAATCGCTGCCATTTATCA 58.540 39.130 20.12 0.00 31.63 2.15
109 110 4.377431 CGAGGTAAATCGCTGCCATTTATC 60.377 45.833 14.03 13.55 35.66 1.75
110 111 3.498397 CGAGGTAAATCGCTGCCATTTAT 59.502 43.478 14.03 1.54 35.66 1.40
111 112 2.869801 CGAGGTAAATCGCTGCCATTTA 59.130 45.455 8.12 8.12 35.66 1.40
112 113 1.670811 CGAGGTAAATCGCTGCCATTT 59.329 47.619 10.01 10.01 35.66 2.32
113 114 1.299541 CGAGGTAAATCGCTGCCATT 58.700 50.000 0.00 0.00 35.66 3.16
114 115 0.178068 ACGAGGTAAATCGCTGCCAT 59.822 50.000 0.00 0.00 46.60 4.40
115 116 0.739462 CACGAGGTAAATCGCTGCCA 60.739 55.000 0.00 0.00 46.60 4.92
116 117 1.429148 CCACGAGGTAAATCGCTGCC 61.429 60.000 0.00 0.00 46.60 4.85
117 118 0.459585 TCCACGAGGTAAATCGCTGC 60.460 55.000 0.00 0.00 46.60 5.25
118 119 1.927174 CTTCCACGAGGTAAATCGCTG 59.073 52.381 0.00 0.00 46.60 5.18
119 120 1.822990 TCTTCCACGAGGTAAATCGCT 59.177 47.619 0.00 0.00 46.60 4.93
120 121 2.288961 TCTTCCACGAGGTAAATCGC 57.711 50.000 0.00 0.00 46.60 4.58
121 122 9.695884 CGTTGATTTCTTCCACGAGGTAAATCG 62.696 44.444 20.21 12.48 44.06 3.34
122 123 6.543736 GTTGATTTCTTCCACGAGGTAAATC 58.456 40.000 19.52 19.52 38.54 2.17
123 124 5.121768 CGTTGATTTCTTCCACGAGGTAAAT 59.878 40.000 0.00 4.35 44.06 1.40
124 125 4.449743 CGTTGATTTCTTCCACGAGGTAAA 59.550 41.667 0.00 0.00 44.06 2.01
125 126 3.991773 CGTTGATTTCTTCCACGAGGTAA 59.008 43.478 0.00 0.00 44.06 2.85
126 127 3.581755 CGTTGATTTCTTCCACGAGGTA 58.418 45.455 0.00 0.00 44.06 3.08
127 128 2.413837 CGTTGATTTCTTCCACGAGGT 58.586 47.619 0.00 0.00 44.06 3.85
128 129 1.732259 CCGTTGATTTCTTCCACGAGG 59.268 52.381 0.00 0.00 44.06 4.63
129 130 1.128692 GCCGTTGATTTCTTCCACGAG 59.871 52.381 0.00 0.00 44.06 4.18
130 131 1.153353 GCCGTTGATTTCTTCCACGA 58.847 50.000 0.00 0.00 44.06 4.35
131 132 1.156736 AGCCGTTGATTTCTTCCACG 58.843 50.000 0.00 0.00 41.75 4.94
132 133 4.000988 TCTTAGCCGTTGATTTCTTCCAC 58.999 43.478 0.00 0.00 0.00 4.02
133 134 4.280436 TCTTAGCCGTTGATTTCTTCCA 57.720 40.909 0.00 0.00 0.00 3.53
134 135 5.622770 TTTCTTAGCCGTTGATTTCTTCC 57.377 39.130 0.00 0.00 0.00 3.46
135 136 7.530863 AGAATTTCTTAGCCGTTGATTTCTTC 58.469 34.615 0.00 0.00 0.00 2.87
136 137 7.454260 AGAATTTCTTAGCCGTTGATTTCTT 57.546 32.000 0.00 0.00 0.00 2.52
137 138 6.183360 CGAGAATTTCTTAGCCGTTGATTTCT 60.183 38.462 0.00 0.00 0.00 2.52
138 139 5.960105 CGAGAATTTCTTAGCCGTTGATTTC 59.040 40.000 0.00 0.00 0.00 2.17
139 140 5.411669 ACGAGAATTTCTTAGCCGTTGATTT 59.588 36.000 0.00 0.00 0.00 2.17
140 141 4.935808 ACGAGAATTTCTTAGCCGTTGATT 59.064 37.500 0.00 0.00 0.00 2.57
141 142 4.330074 CACGAGAATTTCTTAGCCGTTGAT 59.670 41.667 7.82 0.00 0.00 2.57
142 143 3.678072 CACGAGAATTTCTTAGCCGTTGA 59.322 43.478 7.82 0.00 0.00 3.18
143 144 3.725010 GCACGAGAATTTCTTAGCCGTTG 60.725 47.826 7.82 6.06 0.00 4.10
144 145 2.415512 GCACGAGAATTTCTTAGCCGTT 59.584 45.455 7.82 0.00 0.00 4.44
145 146 2.000447 GCACGAGAATTTCTTAGCCGT 59.000 47.619 0.00 2.93 0.00 5.68
146 147 2.271800 AGCACGAGAATTTCTTAGCCG 58.728 47.619 0.00 2.30 0.00 5.52
147 148 3.684788 TGAAGCACGAGAATTTCTTAGCC 59.315 43.478 0.00 0.00 0.00 3.93
148 149 4.390297 AGTGAAGCACGAGAATTTCTTAGC 59.610 41.667 0.00 5.62 39.64 3.09
149 150 5.669848 GCAGTGAAGCACGAGAATTTCTTAG 60.670 44.000 0.00 1.28 39.64 2.18
150 151 4.152402 GCAGTGAAGCACGAGAATTTCTTA 59.848 41.667 0.00 0.00 39.64 2.10
151 152 3.058639 GCAGTGAAGCACGAGAATTTCTT 60.059 43.478 0.00 0.00 39.64 2.52
152 153 2.481952 GCAGTGAAGCACGAGAATTTCT 59.518 45.455 0.00 0.00 39.64 2.52
153 154 2.723010 CGCAGTGAAGCACGAGAATTTC 60.723 50.000 0.00 0.00 39.64 2.17
154 155 1.195448 CGCAGTGAAGCACGAGAATTT 59.805 47.619 0.00 0.00 39.64 1.82
155 156 0.792640 CGCAGTGAAGCACGAGAATT 59.207 50.000 0.00 0.00 39.64 2.17
156 157 0.038251 TCGCAGTGAAGCACGAGAAT 60.038 50.000 0.00 0.00 39.64 2.40
157 158 1.362355 TCGCAGTGAAGCACGAGAA 59.638 52.632 0.00 0.00 39.64 2.87
158 159 3.039134 TCGCAGTGAAGCACGAGA 58.961 55.556 0.00 0.00 39.64 4.04
159 160 3.456798 CTCGCAGTGAAGCACGAG 58.543 61.111 0.00 0.00 45.02 4.18
160 161 2.734723 GCTCGCAGTGAAGCACGA 60.735 61.111 11.78 2.00 39.64 4.35
161 162 4.126390 CGCTCGCAGTGAAGCACG 62.126 66.667 15.61 0.47 39.64 5.34
162 163 3.782244 CCGCTCGCAGTGAAGCAC 61.782 66.667 15.61 0.00 34.10 4.40
164 165 3.989698 TAGCCGCTCGCAGTGAAGC 62.990 63.158 0.00 7.65 41.38 3.86
165 166 1.211818 GATAGCCGCTCGCAGTGAAG 61.212 60.000 0.00 0.00 41.38 3.02
166 167 1.226974 GATAGCCGCTCGCAGTGAA 60.227 57.895 0.00 0.00 41.38 3.18
167 168 2.413351 GATAGCCGCTCGCAGTGA 59.587 61.111 0.00 0.00 41.38 3.41
168 169 2.659897 GGATAGCCGCTCGCAGTG 60.660 66.667 0.00 0.00 41.38 3.66
169 170 2.238847 TTTGGATAGCCGCTCGCAGT 62.239 55.000 0.00 0.00 41.38 4.40
170 171 1.493950 CTTTGGATAGCCGCTCGCAG 61.494 60.000 0.00 0.00 41.38 5.18
171 172 1.521457 CTTTGGATAGCCGCTCGCA 60.521 57.895 0.00 0.00 41.38 5.10
172 173 1.090052 AACTTTGGATAGCCGCTCGC 61.090 55.000 0.00 0.00 36.79 5.03
173 174 1.062587 CAAACTTTGGATAGCCGCTCG 59.937 52.381 0.00 0.00 36.79 5.03
174 175 2.356135 TCAAACTTTGGATAGCCGCTC 58.644 47.619 0.00 0.00 36.79 5.03
175 176 2.489938 TCAAACTTTGGATAGCCGCT 57.510 45.000 0.00 0.00 36.79 5.52
176 177 3.569250 TTTCAAACTTTGGATAGCCGC 57.431 42.857 1.62 0.00 36.79 6.53
177 178 5.925969 ACAATTTTCAAACTTTGGATAGCCG 59.074 36.000 1.62 0.00 36.79 5.52
178 179 7.226523 ACAACAATTTTCAAACTTTGGATAGCC 59.773 33.333 1.62 0.00 0.00 3.93
179 180 8.141835 ACAACAATTTTCAAACTTTGGATAGC 57.858 30.769 1.62 0.00 0.00 2.97
199 200 9.941325 GGCTATCTCTACTACTATAGTACAACA 57.059 37.037 8.59 0.00 40.14 3.33
200 201 9.941325 TGGCTATCTCTACTACTATAGTACAAC 57.059 37.037 8.59 0.00 40.14 3.32
202 203 9.941325 GTTGGCTATCTCTACTACTATAGTACA 57.059 37.037 8.59 0.00 40.14 2.90
203 204 9.382275 GGTTGGCTATCTCTACTACTATAGTAC 57.618 40.741 8.59 0.00 40.14 2.73
204 205 9.336462 AGGTTGGCTATCTCTACTACTATAGTA 57.664 37.037 12.05 12.05 40.14 1.82
205 206 8.222138 AGGTTGGCTATCTCTACTACTATAGT 57.778 38.462 10.87 10.87 42.68 2.12
207 208 9.956640 GTAAGGTTGGCTATCTCTACTACTATA 57.043 37.037 0.00 0.00 0.00 1.31
208 209 8.446394 TGTAAGGTTGGCTATCTCTACTACTAT 58.554 37.037 0.00 0.00 0.00 2.12
209 210 7.809238 TGTAAGGTTGGCTATCTCTACTACTA 58.191 38.462 0.00 0.00 0.00 1.82
210 211 6.670617 TGTAAGGTTGGCTATCTCTACTACT 58.329 40.000 0.00 0.00 0.00 2.57
211 212 6.515365 GCTGTAAGGTTGGCTATCTCTACTAC 60.515 46.154 0.00 0.00 0.00 2.73
212 213 5.535406 GCTGTAAGGTTGGCTATCTCTACTA 59.465 44.000 0.00 0.00 0.00 1.82
213 214 4.342665 GCTGTAAGGTTGGCTATCTCTACT 59.657 45.833 0.00 0.00 0.00 2.57
214 215 4.501743 GGCTGTAAGGTTGGCTATCTCTAC 60.502 50.000 0.00 0.00 0.00 2.59
215 216 3.641906 GGCTGTAAGGTTGGCTATCTCTA 59.358 47.826 0.00 0.00 0.00 2.43
216 217 2.436173 GGCTGTAAGGTTGGCTATCTCT 59.564 50.000 0.00 0.00 0.00 3.10
217 218 2.485657 GGGCTGTAAGGTTGGCTATCTC 60.486 54.545 0.00 0.00 0.00 2.75
218 219 1.490910 GGGCTGTAAGGTTGGCTATCT 59.509 52.381 0.00 0.00 0.00 1.98
219 220 1.810412 CGGGCTGTAAGGTTGGCTATC 60.810 57.143 0.00 0.00 0.00 2.08
220 221 0.180406 CGGGCTGTAAGGTTGGCTAT 59.820 55.000 0.00 0.00 0.00 2.97
221 222 1.600107 CGGGCTGTAAGGTTGGCTA 59.400 57.895 0.00 0.00 0.00 3.93
222 223 2.351276 CGGGCTGTAAGGTTGGCT 59.649 61.111 0.00 0.00 0.00 4.75
223 224 3.440415 GCGGGCTGTAAGGTTGGC 61.440 66.667 0.00 0.00 0.00 4.52
224 225 2.750237 GGCGGGCTGTAAGGTTGG 60.750 66.667 0.00 0.00 0.00 3.77
225 226 0.035820 TAAGGCGGGCTGTAAGGTTG 60.036 55.000 4.27 0.00 0.00 3.77
226 227 0.035725 GTAAGGCGGGCTGTAAGGTT 60.036 55.000 4.27 0.00 0.00 3.50
227 228 0.908180 AGTAAGGCGGGCTGTAAGGT 60.908 55.000 4.27 0.00 0.00 3.50
228 229 1.117150 TAGTAAGGCGGGCTGTAAGG 58.883 55.000 4.27 0.00 0.00 2.69
229 230 4.219944 TCATATAGTAAGGCGGGCTGTAAG 59.780 45.833 4.27 0.00 0.00 2.34
230 231 4.154176 TCATATAGTAAGGCGGGCTGTAA 58.846 43.478 4.27 0.00 0.00 2.41
231 232 3.762288 CTCATATAGTAAGGCGGGCTGTA 59.238 47.826 4.27 0.00 0.00 2.74
232 233 2.563179 CTCATATAGTAAGGCGGGCTGT 59.437 50.000 4.27 0.00 0.00 4.40
233 234 2.563179 ACTCATATAGTAAGGCGGGCTG 59.437 50.000 4.27 0.00 36.36 4.85
234 235 2.563179 CACTCATATAGTAAGGCGGGCT 59.437 50.000 0.00 0.00 35.76 5.19
235 236 2.561419 TCACTCATATAGTAAGGCGGGC 59.439 50.000 0.00 0.00 35.76 6.13
236 237 3.827302 ACTCACTCATATAGTAAGGCGGG 59.173 47.826 0.00 0.00 35.76 6.13
237 238 4.278669 ACACTCACTCATATAGTAAGGCGG 59.721 45.833 0.00 0.00 35.76 6.13
238 239 5.440234 ACACTCACTCATATAGTAAGGCG 57.560 43.478 0.00 0.00 35.76 5.52
239 240 7.513371 AGTACACTCACTCATATAGTAAGGC 57.487 40.000 0.00 0.00 35.76 4.35
240 241 9.999660 TCTAGTACACTCACTCATATAGTAAGG 57.000 37.037 0.00 0.00 35.76 2.69
244 245 9.496873 GTCATCTAGTACACTCACTCATATAGT 57.503 37.037 0.00 0.00 39.81 2.12
245 246 9.719355 AGTCATCTAGTACACTCACTCATATAG 57.281 37.037 0.00 0.00 0.00 1.31
249 250 9.719355 CTATAGTCATCTAGTACACTCACTCAT 57.281 37.037 0.00 0.00 0.00 2.90
250 251 8.925338 TCTATAGTCATCTAGTACACTCACTCA 58.075 37.037 0.00 0.00 0.00 3.41
251 252 9.938280 ATCTATAGTCATCTAGTACACTCACTC 57.062 37.037 0.00 0.00 0.00 3.51
252 253 9.719355 CATCTATAGTCATCTAGTACACTCACT 57.281 37.037 0.00 0.00 0.00 3.41
253 254 9.713713 TCATCTATAGTCATCTAGTACACTCAC 57.286 37.037 0.00 0.00 0.00 3.51
254 255 9.713713 GTCATCTATAGTCATCTAGTACACTCA 57.286 37.037 0.00 0.00 0.00 3.41
255 256 9.713713 TGTCATCTATAGTCATCTAGTACACTC 57.286 37.037 0.00 0.00 0.00 3.51
258 259 9.454859 CCATGTCATCTATAGTCATCTAGTACA 57.545 37.037 0.00 0.00 0.00 2.90
259 260 8.402472 GCCATGTCATCTATAGTCATCTAGTAC 58.598 40.741 0.00 0.00 0.00 2.73
260 261 8.109634 TGCCATGTCATCTATAGTCATCTAGTA 58.890 37.037 0.00 0.00 0.00 1.82
261 262 6.950619 TGCCATGTCATCTATAGTCATCTAGT 59.049 38.462 0.00 0.00 0.00 2.57
262 263 7.401955 TGCCATGTCATCTATAGTCATCTAG 57.598 40.000 0.00 0.00 0.00 2.43
263 264 7.968014 ATGCCATGTCATCTATAGTCATCTA 57.032 36.000 0.00 0.00 0.00 1.98
264 265 6.870895 ATGCCATGTCATCTATAGTCATCT 57.129 37.500 0.00 0.00 0.00 2.90
275 276 6.222389 GGCTATATAGAGATGCCATGTCATC 58.778 44.000 14.16 8.70 42.79 2.92
276 277 6.172136 GGCTATATAGAGATGCCATGTCAT 57.828 41.667 14.16 0.00 42.79 3.06
277 278 5.604758 GGCTATATAGAGATGCCATGTCA 57.395 43.478 14.16 0.00 42.79 3.58
283 284 4.630111 GCTGATGGCTATATAGAGATGCC 58.370 47.826 14.16 8.34 43.49 4.40
299 300 6.701340 TGGTTAATAGTATAGCCAGCTGATG 58.299 40.000 17.39 0.00 32.02 3.07
300 301 6.935240 TGGTTAATAGTATAGCCAGCTGAT 57.065 37.500 17.39 5.91 32.02 2.90
301 302 6.701340 CATGGTTAATAGTATAGCCAGCTGA 58.299 40.000 17.39 0.00 39.18 4.26
302 303 5.352569 GCATGGTTAATAGTATAGCCAGCTG 59.647 44.000 6.78 6.78 39.18 4.24
303 304 5.249393 AGCATGGTTAATAGTATAGCCAGCT 59.751 40.000 0.00 0.00 39.18 4.24
304 305 5.491982 AGCATGGTTAATAGTATAGCCAGC 58.508 41.667 0.00 8.73 39.18 4.85
305 306 6.940739 AGAGCATGGTTAATAGTATAGCCAG 58.059 40.000 0.00 2.11 39.18 4.85
306 307 6.935240 AGAGCATGGTTAATAGTATAGCCA 57.065 37.500 0.00 3.65 39.96 4.75
307 308 8.532819 AGTAAGAGCATGGTTAATAGTATAGCC 58.467 37.037 0.00 0.00 0.00 3.93
308 309 9.360093 CAGTAAGAGCATGGTTAATAGTATAGC 57.640 37.037 0.00 0.00 0.00 2.97
317 318 9.764363 CAGTATAATCAGTAAGAGCATGGTTAA 57.236 33.333 0.00 0.00 0.00 2.01
318 319 9.143155 TCAGTATAATCAGTAAGAGCATGGTTA 57.857 33.333 0.00 0.00 0.00 2.85
319 320 7.928706 GTCAGTATAATCAGTAAGAGCATGGTT 59.071 37.037 0.00 0.00 0.00 3.67
320 321 7.288852 AGTCAGTATAATCAGTAAGAGCATGGT 59.711 37.037 0.00 0.00 0.00 3.55
321 322 7.665690 AGTCAGTATAATCAGTAAGAGCATGG 58.334 38.462 0.00 0.00 0.00 3.66
340 341 8.956426 TGAACAAGTTTTCTTTCATTAGTCAGT 58.044 29.630 0.00 0.00 38.17 3.41
341 342 9.226345 GTGAACAAGTTTTCTTTCATTAGTCAG 57.774 33.333 0.00 0.00 38.17 3.51
342 343 7.908082 CGTGAACAAGTTTTCTTTCATTAGTCA 59.092 33.333 0.00 0.00 38.17 3.41
343 344 7.097006 GCGTGAACAAGTTTTCTTTCATTAGTC 60.097 37.037 0.00 0.00 38.17 2.59
344 345 6.691388 GCGTGAACAAGTTTTCTTTCATTAGT 59.309 34.615 0.00 0.00 38.17 2.24
345 346 6.690957 TGCGTGAACAAGTTTTCTTTCATTAG 59.309 34.615 0.00 0.00 38.17 1.73
346 347 6.470877 GTGCGTGAACAAGTTTTCTTTCATTA 59.529 34.615 0.00 0.00 38.17 1.90
347 348 5.288472 GTGCGTGAACAAGTTTTCTTTCATT 59.712 36.000 0.00 0.00 38.17 2.57
348 349 4.798387 GTGCGTGAACAAGTTTTCTTTCAT 59.202 37.500 0.00 0.00 38.17 2.57
349 350 4.162812 GTGCGTGAACAAGTTTTCTTTCA 58.837 39.130 0.00 0.00 38.17 2.69
350 351 3.237433 CGTGCGTGAACAAGTTTTCTTTC 59.763 43.478 0.00 0.00 38.17 2.62
351 352 3.168193 CGTGCGTGAACAAGTTTTCTTT 58.832 40.909 0.00 0.00 38.17 2.52
352 353 2.160813 ACGTGCGTGAACAAGTTTTCTT 59.839 40.909 0.00 0.00 41.31 2.52
353 354 1.735571 ACGTGCGTGAACAAGTTTTCT 59.264 42.857 0.00 0.00 0.00 2.52
354 355 2.168201 ACGTGCGTGAACAAGTTTTC 57.832 45.000 0.00 0.00 0.00 2.29
383 384 3.858989 TGTGCGTGTGTGTGTGCG 61.859 61.111 0.00 0.00 0.00 5.34
384 385 2.277247 GTGTGCGTGTGTGTGTGC 60.277 61.111 0.00 0.00 0.00 4.57
385 386 1.225991 GTGTGTGCGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
386 387 2.735677 CGTGTGTGCGTGTGTGTGT 61.736 57.895 0.00 0.00 0.00 3.72
387 388 2.021243 CGTGTGTGCGTGTGTGTG 59.979 61.111 0.00 0.00 0.00 3.82
388 389 3.192230 CCGTGTGTGCGTGTGTGT 61.192 61.111 0.00 0.00 0.00 3.72
389 390 2.888051 TCCGTGTGTGCGTGTGTG 60.888 61.111 0.00 0.00 0.00 3.82
390 391 2.888534 GTCCGTGTGTGCGTGTGT 60.889 61.111 0.00 0.00 0.00 3.72
391 392 3.983562 CGTCCGTGTGTGCGTGTG 61.984 66.667 0.00 0.00 0.00 3.82
411 412 3.858989 TGTGTGTGTGTGTGCGCG 61.859 61.111 0.00 0.00 0.00 6.86
412 413 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
413 414 2.021243 CGTGTGTGTGTGTGTGCG 59.979 61.111 0.00 0.00 0.00 5.34
414 415 2.277247 GCGTGTGTGTGTGTGTGC 60.277 61.111 0.00 0.00 0.00 4.57
415 416 1.225991 GTGCGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
416 417 1.669437 TGTGCGTGTGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
417 418 1.225991 GTGTGCGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
418 419 1.231296 TTGTGTGCGTGTGTGTGTGT 61.231 50.000 0.00 0.00 0.00 3.72
419 420 0.521034 CTTGTGTGCGTGTGTGTGTG 60.521 55.000 0.00 0.00 0.00 3.82
420 421 0.953471 ACTTGTGTGCGTGTGTGTGT 60.953 50.000 0.00 0.00 0.00 3.72
421 422 1.003108 TACTTGTGTGCGTGTGTGTG 58.997 50.000 0.00 0.00 0.00 3.82
422 423 1.948104 ATACTTGTGTGCGTGTGTGT 58.052 45.000 0.00 0.00 0.00 3.72
423 424 3.332761 AAATACTTGTGTGCGTGTGTG 57.667 42.857 0.00 0.00 0.00 3.82
424 425 4.260866 GGTTAAATACTTGTGTGCGTGTGT 60.261 41.667 0.00 0.00 0.00 3.72
425 426 4.215965 GGTTAAATACTTGTGTGCGTGTG 58.784 43.478 0.00 0.00 0.00 3.82
426 427 3.878103 TGGTTAAATACTTGTGTGCGTGT 59.122 39.130 0.00 0.00 0.00 4.49
427 428 4.475763 TGGTTAAATACTTGTGTGCGTG 57.524 40.909 0.00 0.00 0.00 5.34
428 429 5.502153 TTTGGTTAAATACTTGTGTGCGT 57.498 34.783 0.00 0.00 0.00 5.24
429 430 6.474102 AGTTTTTGGTTAAATACTTGTGTGCG 59.526 34.615 0.00 0.00 35.45 5.34
430 431 7.764695 AGTTTTTGGTTAAATACTTGTGTGC 57.235 32.000 0.00 0.00 35.45 4.57
431 432 9.240159 GGTAGTTTTTGGTTAAATACTTGTGTG 57.760 33.333 0.00 0.00 38.47 3.82
432 433 8.968969 TGGTAGTTTTTGGTTAAATACTTGTGT 58.031 29.630 0.00 0.00 38.47 3.72
433 434 9.240159 GTGGTAGTTTTTGGTTAAATACTTGTG 57.760 33.333 0.00 0.00 38.47 3.33
434 435 8.968969 TGTGGTAGTTTTTGGTTAAATACTTGT 58.031 29.630 0.00 0.00 38.47 3.16
514 518 3.670625 CCACGGATTAGGACAAAACTGA 58.329 45.455 0.00 0.00 0.00 3.41
576 582 2.069273 CTGGTCAGTTTCGTGCTTAGG 58.931 52.381 0.00 0.00 0.00 2.69
816 849 1.407437 GGCATCCTCAACTTCGACCAT 60.407 52.381 0.00 0.00 0.00 3.55
817 850 0.036388 GGCATCCTCAACTTCGACCA 60.036 55.000 0.00 0.00 0.00 4.02
821 854 1.303309 GGATGGCATCCTCAACTTCG 58.697 55.000 34.15 0.00 46.19 3.79
971 1006 7.181569 AGAAACTTGGAATCAAACCAAAAGA 57.818 32.000 0.00 0.00 45.05 2.52
1081 1130 2.160721 ACCATCTTCTTCGGCCTCTA 57.839 50.000 0.00 0.00 0.00 2.43
1173 1222 4.469657 TCTCCACCAGCAAAACAAGTAAT 58.530 39.130 0.00 0.00 0.00 1.89
1318 1424 6.401047 GCACTTTCAAGTTTCAGTTCAAAACC 60.401 38.462 0.00 0.00 37.08 3.27
1741 2013 1.139498 TCTGGCCAAGGACCATCCAA 61.139 55.000 7.01 0.00 39.61 3.53
1977 2253 8.571461 TCTTCTCATTTAGTTCATTGATTGCT 57.429 30.769 0.00 0.00 0.00 3.91
2050 2326 0.251474 TGCTCCTTGGCAAGCTTCAT 60.251 50.000 21.77 0.00 39.43 2.57
2268 2546 7.052248 GCCTACTAATTACTTTACCCACACAT 58.948 38.462 0.00 0.00 0.00 3.21
2391 2679 7.237055 AGTTCTTAAACCATAACAGTACCTCCT 59.763 37.037 0.00 0.00 35.92 3.69
2458 2746 7.255312 GCATGAGTACTCACTTAGCATAGTAGT 60.255 40.741 27.41 3.89 43.11 2.73
2512 2800 7.386059 TGCAGAGTAAAACAGACTCATCATAA 58.614 34.615 5.65 0.00 44.86 1.90
2796 3429 4.920376 AGTTCAAATGTTCAGTTTGGTCG 58.080 39.130 0.00 0.00 37.22 4.79
2932 3568 2.456119 CCGTGAAGATGACTGCGGC 61.456 63.158 0.00 0.00 33.11 6.53
3160 3809 0.954449 GTCCTCTGACGACGAGGTGA 60.954 60.000 18.77 5.07 46.49 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.